BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038542
         (475 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/478 (77%), Positives = 426/478 (89%), Gaps = 3/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           MLE    PNKFTYPFVLKACAGIG+LNLGKSVHG+V+KF FGD+++VQNTLVHMY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 59  -EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
            EGGIE  RKVFDEM + DSVSWSAMIGGY R+G S+DAI+LFR+MQI GVCPDEITMV+
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VLSACT LGALE+GKWVES++EK+ V ++V L NALIDMFAKCGDVDKA  LFRSM  R 
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           IVSWTSVI GLAMHGRG+EAVA+FEEM+ +GV PDDV F+GLLSACSH GLVDKG+ YFD
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFD 240

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           SM+ DF I+PKIEHYGCMVDMLCR+G VKEA +F+Q+MPI+ NP++WRTLI+AC A GEL
Sbjct: 241 SMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGEL 300

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           KL E IT++LI NEPMHESNYVLLS+IYAK+  WEKKT+IRE MD +GMKKIPGST+IEL
Sbjct: 301 KLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIEL 360

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           DNEIYEFV GDKSH QSKEIYEM+DEMG++MK+AGY+PTT+EVLLDI++EDKED LN+HS
Sbjct: 361 DNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHS 420

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAFALL TPPGT IRIVKNLRVC+DCHSA+KFISKIYNREIVVRDR+RFHHFK+
Sbjct: 421 EKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKN 478


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/476 (75%), Positives = 417/476 (87%), Gaps = 1/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-E 59
           ML YGV+PNKFT+PFVLK CAGIG L LGK VHG V+KF F +D+HV NTL+HMY    E
Sbjct: 116 MLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGE 175

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            G E   KVFD+  + D+V+WSAMI G+ RLG S+ A+DLFR+MQ+ GVCPDEITMV+VL
Sbjct: 176 DGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVL 235

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC DLGALE+GKWVES++EK+ + +SV LCNALIDMFAKCG+VDKA+KLFR M+ RTIV
Sbjct: 236 SACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIV 295

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTSVIAGLAMHGRGL+AV+LF+EM+E G+ PDDVAF+G+LSACSH GLVDKGR YF SM
Sbjct: 296 SWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM 355

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +F I+PK+EHYGCMVD+LCR G VKEA EF+QKMP E N IIWRT+I+AC A GELKL
Sbjct: 356 ERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKL 415

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            ESI+K LI +EPMHESNYVLLS+IYAKL +WEKKTK+RE+MD RGMKK+PGST+IE++N
Sbjct: 416 GESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNN 475

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           E+YEFV GDKSH Q KEIYEM+DEMGR++KKAGYVPTTS+VLLDI+EEDKEDAL +HSEK
Sbjct: 476 EMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEK 535

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAFALL TPPGT IRIVKNLRVC DCHSATKFISK+YNREIVVRDR+RFHHFK+
Sbjct: 536 LAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKN 591



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 76  DSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           D+  ++ +I  Y++   S +++   +R M   GV P++ T   VL  C  +G+L +GK V
Sbjct: 88  DAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCV 147

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGD--VDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
              + K      V + N LI M+   G+   + A K+F        V+W+++IAG    G
Sbjct: 148 HGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLG 207

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--EYFDSMKNDFGIIPK-I 249
               AV LF EM   GV PD++  V +LSAC+  G ++ G+  E +   KN    IPK +
Sbjct: 208 CSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKN----IPKSV 263

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKLAESITKRLI 308
           E    ++DM  + G V +A +  ++M  ++  I+ W ++I+     G    A S+   ++
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLFRQM--DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMV 321

Query: 309 GN 310
            N
Sbjct: 322 EN 323


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/475 (73%), Positives = 412/475 (86%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PNKFTYPFVLKACAG+  LNLG++VHG+V+KF F  DIHVQNT+VHMY  C G
Sbjct: 123 MLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAG 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           GI   RKVFDEM + DSV+WSAMIGGYAR+G ST+A+ LFR+MQ++ VCPDEITMV++LS
Sbjct: 183 GINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLS 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACTDLGALE+GKW+E++IE+  +++ V + NALIDMFAKCGD+ KALKLFR+MN +TIVS
Sbjct: 243 ACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVS 302

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTSVI G+AMHGRG EA  LFEEM  +GV PDDVAF+GLLSACSH GLV++GREYF SM 
Sbjct: 303 WTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMM 362

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + ++PKIEHYGCMVDM CR+G VKEA EF++ MPIE NP+I RTL+SAC   GE KL 
Sbjct: 363 KKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLG 422

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E ITK L+ +EP+HESNYVLLS+IYAK L WEKKTKIREVM+ +GMKK+PGST+IE+DNE
Sbjct: 423 EKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNE 482

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IYEFV GDKSH Q KEIYEM+DEMGR+MKK+GY P+TSEVLLDINEEDKED+LN+HSEKL
Sbjct: 483 IYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKL 542

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL+TPPGTPIRIVKNLRVC+DCHSA+KFISKIY+REI++RDR+RFHHFK 
Sbjct: 543 AIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKS 597


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/475 (72%), Positives = 416/475 (87%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML YG+SPNK+ +PFVLKACAG+ DLNLGK+VHG+++KF F DDI VQNT+VHMY  C G
Sbjct: 100 MLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSG 159

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+E  RK+FDEM + D V+W+AMIGGYARLG S  A+ LFR+MQI+GVCPD++TMV+VLS
Sbjct: 160 GMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLS 219

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACTDLGALE+GKW+ES+IEK+ V ++V L NAL+DMFAKCGDVDKAL LFR+M+ RTIVS
Sbjct: 220 ACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVS 279

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTSVI GLAMHGRGLEAV+LFEEM  +G+ P+D+AF+GLLSACSH GLV++GR+YF  M 
Sbjct: 280 WTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMT 339

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI+PKIEHYGCMVD+L R+G V EA EF+++MPIE NPIIWRTLISAC   GELKL 
Sbjct: 340 RQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLG 399

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           ESI+K+LI NEPMHESNYVLLS+IY K+L WEKK+KIR  M K+G++K+PGST+IELDNE
Sbjct: 400 ESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNE 459

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+EF+ GD+SH+Q  EI +M++EMGR+MK+AGY PTT+EV LDI+EEDKEDAL++HSEKL
Sbjct: 460 IHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKL 519

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFALL TPPG+PIRI KNLRVC DCHSA+KFISKIYNREIV+RDR RFHHF+D
Sbjct: 520 AIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRD 574



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 9/284 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+AC  +  L     +H  ++K  F ++  V         + +        VF     R
Sbjct: 13  ILQACNTLPKL---AQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69

Query: 76  --DSVSWSAMIGGYARLGLST-DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
             D+  +S +I  YA    S  +AI  +  M   G+ P++     VL AC  L  L +GK
Sbjct: 70  VYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGK 129

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
            V   + K   +  + + N ++ M+  C G ++ A KLF  M     V+WT++I G A  
Sbjct: 130 AVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARL 189

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G+   AV LF +M  AGV PDDV  V +LSAC+  G ++ G+ + +S      ++  +E 
Sbjct: 190 GQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGK-WIESYIEKERVLKTVEL 248

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +VDM  + G V +A    + M  +   + W ++I      G
Sbjct: 249 SNALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMHG 291


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/479 (72%), Positives = 412/479 (86%), Gaps = 4/479 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  + VSPNKFT+PFVLKACAG+  L LG +VH +++KF F +D HV+NTLVHMY  C  
Sbjct: 218 MRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQ 277

Query: 59  --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
               G    +KVFDE   +DSV+WSAMIGGYAR G S  A+ LFR+MQ++GVCPDEITMV
Sbjct: 278 DGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMV 337

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +VLSAC DLGALE+GKW+ES+IE++ + RSV LCNALIDMFAKCGDVD+A+K+FR M  R
Sbjct: 338 SVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR 397

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           TIVSWTS+I GLAMHGRGLEAV +F+EM+E GV PDDVAF+G+LSACSH GLVDKG  YF
Sbjct: 398 TIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYF 457

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           ++M+N F I+PKIEHYGCMVDML R+GRV EA EF++ MP+E N +IWR++++AC ARGE
Sbjct: 458 NTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGE 517

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           LKL ES+ K LI  EP HESNYVLLS+IYAKLLRWEKKTK+RE+MD +GM+KIPGST+IE
Sbjct: 518 LKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIE 577

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++NEIYEFV GDKSH Q KEIYEM++EMGR++K+AGYVPTTS+VLLDI+EEDKEDAL +H
Sbjct: 578 MNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRH 637

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLAIAFALL TPPGTPIRIVKNLRVC DCHSATKFISK+YNREIVVRDR+RFHHFK+
Sbjct: 638 SEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKN 696



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 10/227 (4%)

Query: 76  DSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           D+  ++ +I  +A+   S   A+  +  M+   V P++ T   VL AC  +  LE+G  V
Sbjct: 190 DAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAV 249

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKC------GDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            + + K        + N L+ M+  C      G V  A K+F     +  V+W+++I G 
Sbjct: 250 HASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGY 308

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A  G    AV LF EM   GV PD++  V +LSAC+  G ++ G+ + +S      I+  
Sbjct: 309 ARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGK-WLESYIERKNIMRS 367

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +E    ++DM  + G V  A +  ++M +    + W ++I      G
Sbjct: 368 VELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMIVGLAMHG 413


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/478 (60%), Positives = 375/478 (78%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   V PNKFT+PF+LKACA + G  ++G   H A LKF F  D +V NTL+HMY SC 
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 175

Query: 60  GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           GG  LG  R VFD M +  +V+WSAMIGGY R GLS+DA+DLFR+MQ +GV  DE+T++ 
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIG 235

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL+A TDLGALE+ +WV  F+E++ + +SV LCNALID  AKCGDVD A+ +F  M  R+
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWTSVI  LAM GRG EAV +FEEM  AGVPPDDVAF+G+L+ACSH G+VD+G  YFD
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +MK ++GI PKIEHYGCMVDM  R+G V+ A EF++ MPI+ NP+IWR+L+SAC A G L
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +L ESIT+ L+   P HE+NY++LS+++A   RW++K++IR  M KRG+KK+PG +++EL
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D E++EF+ GD+SH Q K+IY M++EM R++++ G++  TSEVLLD++EEDKE AL  HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAFALL+TPPGT +R+VKNLRVC+DCH+A K IS++Y REIVVRDR RFH FKD
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKD 593


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 288/478 (60%), Positives = 375/478 (78%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   V PNKFT+PF+LKACA + G  ++G   H A LKF F  D +V NTL+HMY SC 
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 175

Query: 60  GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           GG  LG  R VFD M +  +V+WSAMIGGY R GLS+DA++LFR+MQ +GV  DE+T++ 
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIG 235

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL+A TDLGALE+ +WV  F+E++ + +SV LCNALID  AKCGDVD A+ +F  M  R+
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWTSVI  LAM GRG EAV +FEEM  AGVPPDDVAF+G+L+ACSH G+VD+G  YFD
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +MK ++GI PKIEHYGCMVDM  R+G V+ A EF++ MPI+ NP+IWR+L+SAC A G L
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +L ESIT+ L+   P HE+NY++LS+++A   RW++K++IR  M KRG+KK+PG +++EL
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D E++EF+ GD+SH Q K+IY M++EM R++++ G++  TSEVLLD++EEDKE AL  HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAFALL+TPPGT +R+VKNLRVC+DCH+A K IS++Y REIVVRDR RFH FKD
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKD 593


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/478 (60%), Positives = 372/478 (77%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   V+PNKFT+PF+LK+CA + G  ++G   H A LKF F  D +V NTL+HMY SC 
Sbjct: 126 MLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY-SCF 184

Query: 60  GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           G   LG  R VF+ M    +V+WSAMIGGY R GLS+DA+ LFR MQ+SGV PDE+T++ 
Sbjct: 185 GAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIG 244

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL+A  DLGALE+ +WV  F+E++ + +SV LCNALID  AKCGDVD A+ +F  M  RT
Sbjct: 245 VLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERT 304

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWTSVI  LAM GRG EAV +FEEM   GV PDDVAF+G+L+ACSH G+VD+GR YFD
Sbjct: 305 VVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFD 364

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           SMK ++GI PKIEHYGCMVDM  R+G V++  EF++ MP++ NPIIWRTL++AC A G L
Sbjct: 365 SMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRL 424

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +L ESIT+ L+   P HE+NYV+LS++YA   RW++K++IR  M KRG+KK+PG +L+EL
Sbjct: 425 ELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVEL 484

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D E++EF+ GD+SH Q KEIY M++EM R++++ G++  TSEVLLD++EEDKE AL  HS
Sbjct: 485 DGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHS 544

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS++YNREIVVRDR RFH FKD
Sbjct: 545 EKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKD 602


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/477 (61%), Positives = 371/477 (77%), Gaps = 5/477 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PNKFT+PF+LKACA      +G   H A LKF F  D +V NTL+HMY SC G
Sbjct: 137 MLRSATLPNKFTFPFLLKACAAFP--GVGVQAHAAALKFGFTTDQYVSNTLIHMY-SCFG 193

Query: 61  GIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           G  LG  R VFD M++  +V+WSAMIGGY R GLS+DA+ LFR+MQ SGV PDE+TM+ V
Sbjct: 194 GEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGV 253

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L+A  DLGALE+ +WV  F+EK+ + +SV LCNALID  AKCGD+D A+ +F+ M  RTI
Sbjct: 254 LAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTI 313

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWTSVI  LAM GRG EAVA+FEEM  AGV PDDVAF+G+L+ACSH G+VD+G  YF+S
Sbjct: 314 VSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFES 373

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  +GI PKIEHYGCMVDM  R+G V+ A EF+ KMP++ NPIIWRTL++AC A G L+
Sbjct: 374 MRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLE 433

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E+IT+ L+   P HE+NYV+LS++YA   RW++K++IR  M KRG+KK+PG +L+ELD
Sbjct: 434 LGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELD 493

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            E++EF+ GD+SH Q KEIY M++EM R++++AG++  TSEVLLD++EEDKE AL  HSE
Sbjct: 494 GEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSE 553

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS +YNREI+VRDR RFH FK+
Sbjct: 554 KLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKN 610


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 293/478 (61%), Positives = 368/478 (76%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   V PNKFT+PF+LKACA + G   +G   H A LKF F  D +V NTL+HMY SC 
Sbjct: 122 MLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 180

Query: 60  GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           GG  LG  R VFD M +   V+WSAMIGGY R GLS+DA+ LFR+MQ SGV PDE+T++ 
Sbjct: 181 GGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIG 240

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL+A  DLGALE+ +WV  F+E++ + +SV LCNALID  AKCGDVD A+ +F+ M  RT
Sbjct: 241 VLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERT 300

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWTSVI  LAM GRG EAVA+FE M  AGV PDDV F+G+L+ACSH G+VD+G  YFD
Sbjct: 301 VVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFD 360

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           SMK ++GI PKIEHYGCMVDM  R+G V+ A EFI  MP++ NPIIWRTL++AC A G L
Sbjct: 361 SMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRL 420

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +L ESIT+ L+   P HE+NYV+LS++YA   RW++K++IR  M KRG+KK+PG +L+EL
Sbjct: 421 ELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVEL 480

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D E++EF+ GD+SH Q KEIY M++EM R++K  G++  TSEVLLD++EEDKE AL  HS
Sbjct: 481 DGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHS 540

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS +YNREI+VRDR RFH FK+
Sbjct: 541 EKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKN 598


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/470 (51%), Positives = 334/470 (71%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  TYPF+LKA A + D+  G+ VH   ++  F   + VQNTLVHMY +C G  E  
Sbjct: 136 IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC-GHAESA 194

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+F+ M+ER+ V+W+++I GYA  G   +A+ LFR+M + GV PD  TMV++LSAC +L
Sbjct: 195 HKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAEL 254

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL +G+    ++ K  ++ ++   NAL+D++AKCG + +A K+F  M  +++VSWTS+I
Sbjct: 255 GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLI 314

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            GLA++G G EA+ LF+E+   G+ P ++ FVG+L ACSHCG+VD+G +YF  MK ++GI
Sbjct: 315 VGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGI 374

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +PKIEHYGCMVD+L R+G VK+AHEFIQ MP++ N ++WRTL+ AC   G L L E    
Sbjct: 375 VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARA 434

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L+  EP H  +YVLLS++YA   RW    K+R  M + G+KK PG +L+EL N ++EFV
Sbjct: 435 QLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFV 494

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH Q++EIY  L E+ + +K  GYVP  S VL DI EE+KE AL+ HSEK+AIAF 
Sbjct: 495 MGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFM 554

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L+ T  G PIR+VKNLRVC DCH A K ISK+++REIVVRDR RFHHFKD
Sbjct: 555 LINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKD 604



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 2/243 (0%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++F ++   +  +W+ MI GYA       A++L+RQM +S + PD  T   +L A   
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  +  G+ V S   +      V + N L+ M+A CG  + A KLF  M  R +V+W SV
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G A++GR  EA+ LF EM   GV PD    V LLSAC+  G +  GR     M    G
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK-VG 271

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           +   +     ++D+  + G +++AH+   +M  E + + W +LI      G  K A  + 
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNGFGKEALELF 330

Query: 305 KRL 307
           K L
Sbjct: 331 KEL 333



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ FT   +L ACA +G L LG+  H  ++K     ++H  N L+ +Y  C G I  
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKC-GSIRQ 294

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVFDEM E+  VSW+++I G A  G   +A++LF++++  G+ P EIT V VL AC+ 
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWT 182
            G ++ G  + +   E+  +   +     ++D+  + G V +A +  ++M  +   V W 
Sbjct: 355 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 414

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 415 TLLGACTIHG 424



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           +  + + C  +  A ++F  +    I +W ++I G A     + A+ L+ +M  + + PD
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 213 DVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
              +  LL A +    V +G +    +++N F  +  ++    +V M    G  + AH+ 
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQ--NTLVHMYAACGHAESAHKL 197

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKR--LIGNEP 312
            + M  E N + W ++I+     G    A ++ +   L G EP
Sbjct: 198 FELMA-ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 239


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/469 (50%), Positives = 334/469 (71%), Gaps = 1/469 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  TYPF+LKA +   ++  G+++H   ++  F   + VQN+L+H+Y +C G  E  
Sbjct: 114 VEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC-GDTESA 172

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVF+ M ERD V+W++MI G+A  G   +A+ LFR+M + GV PD  T+V++LSA  +L
Sbjct: 173 YKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAEL 232

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GALE+G+ V  ++ K  ++++  + N+L+D++AKCG + +A ++F  M+ R  VSWTS+I
Sbjct: 233 GALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLI 292

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            GLA++G G EA+ LF+EM   G+ P ++ FVG+L ACSHCG++D+G EYF  MK + GI
Sbjct: 293 VGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGI 352

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           IP+IEHYGCMVD+L R+G VK+A+E+IQ MP++ N +IWRTL+ AC   G L L E    
Sbjct: 353 IPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARS 412

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            L+  EP H  +YVLLS++YA   RW     IR  M K G+KK PG +L+EL N +YEF 
Sbjct: 413 HLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFT 472

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH QS+++Y +L+++   +K  GYVP T+ VL DI EE+KE AL+ HSEK+AIAF 
Sbjct: 473 MGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFM 532

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LL TPPGTPIR++KNLRVC DCH A K I+KIY+REIV+RDR RFHHF+
Sbjct: 533 LLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFR 581



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ FT   +L A A +G L LG+ VH  +LK     + HV N+L+ +Y  C G I  
Sbjct: 214 GVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKC-GAIRE 272

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            ++VF EMSER++VSW+++I G A  G   +A++LF++M+  G+ P EIT V VL AC+ 
Sbjct: 273 AQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWT 182
            G L+ G ++     E+  +   +     ++D+ ++ G V +A +  ++M  +   V W 
Sbjct: 333 CGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWR 392

Query: 183 SVIAGLAMHGR-GLEAVA 199
           +++    +HG  GL  +A
Sbjct: 393 TLLGACTIHGHLGLGEIA 410



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           L+    S    +     VF  +   +  +W+ +I GYA     + A   +RQM +S V P
Sbjct: 57  LIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEP 116

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T   +L A +    +  G+ + S   +      V + N+L+ ++A CGD + A K+F
Sbjct: 117 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVF 176

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  R +V+W S+I G A++GR  EA+ LF EM   GV PD    V LLSA +  G ++
Sbjct: 177 ELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALE 236

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            GR     +    G+         ++D+  + G ++EA     +M  E N + W +LI  
Sbjct: 237 LGRRVHVYLLK-VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLIVG 294

Query: 291 CCARG 295
               G
Sbjct: 295 LAVNG 299


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/475 (50%), Positives = 337/475 (70%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE  +  ++ T   VL AC  + DL LG+ ++  V +     +  +  +LV MY  C G
Sbjct: 216 MLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKC-G 274

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R++FD+M  RD V+WSAMI GY++     +A+DLF +MQ + + P+EITMV++LS
Sbjct: 275 QVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILS 334

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGALE GKWV  FI+K+ +  +V L  AL+D +AKCG V+ ++++F  M  + ++S
Sbjct: 335 SCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLS 394

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +I GLA +G+G +A+  F  MLE  V P+DV F+G+LSACSH GLVD+GR+ F SM 
Sbjct: 395 WTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMS 454

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DFGI P+IEHYGCMVD+L R+G ++EA +FI+ MPI+ N +IWRTL+++C     +++ 
Sbjct: 455 RDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIG 514

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+LI  EP H  +Y+LLS+IYA + RWE   K+R  M ++G+KK PG +LIELD  
Sbjct: 515 EESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGV 574

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+EF   D  H QS+EIY  +++M +++K AGYVP T+E  LD  E+DKE +++ HSEKL
Sbjct: 575 IHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKL 634

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+K+PPGT IRI KNLRVC DCH+ATK +SK++NREIVVRDR RFHHFK+
Sbjct: 635 AIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKE 689



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V P++FT+P +LK C+ +  L+ G+ +H  ++K  FG    V+NTL+HMY +C G
Sbjct: 115 MHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANC-G 173

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E+ R+VFDEMSER+  +W++M  GY + G   + + LF +M    +  DE+T+V+VL+
Sbjct: 174 EVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLT 233

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L  LE+G+W+  ++E++ +  +  L  +L+DM+AKCG VD A +LF  M+ R +V+
Sbjct: 234 ACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVA 293

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--EYFDS 238
           W+++I+G +   R  EA+ LF EM +A + P+++  V +LS+C+  G ++ G+   +F  
Sbjct: 294 WSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIK 353

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            K    +   +     ++D   + G V+ + E   KMP++ N + W  LI    + G+ K
Sbjct: 354 KKR---MKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQGK 409

Query: 299 LA 300
            A
Sbjct: 410 KA 411



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 49/324 (15%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-EGGIELGRKVFDEMS 73
            +L+ C  I DLN    +H  ++K +      V   L+          ++    +F ++ 
Sbjct: 29  LILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQID 85

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           E DS +++ MI G+       +AI LF++M  + V PDE T   +L  C+ L AL  G+ 
Sbjct: 86  EPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQ 145

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           + + I K        + N LI M+A CG+V+ A ++F  M+ R + +W S+ AG    G 
Sbjct: 146 IHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGN 205

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSAC------------------------------ 223
             E V LF EMLE  +  D+V  V +L+AC                              
Sbjct: 206 WEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITS 265

Query: 224 -----SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA----HEFIQK 274
                + CG VD  R  FD M         +  +  M+    ++ R +EA    HE +QK
Sbjct: 266 LVDMYAKCGQVDTARRLFDQMDRR-----DVVAWSAMISGYSQASRCREALDLFHE-MQK 319

Query: 275 MPIEANPIIWRTLISACCARGELK 298
             I+ N I   +++S+C   G L+
Sbjct: 320 ANIDPNEITMVSILSSCAVLGALE 343


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/505 (49%), Positives = 342/505 (67%), Gaps = 36/505 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P++FT+P + K+C   G L  GK +H    K  F  D ++QNTL++MY +C G
Sbjct: 69  MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNC-G 124

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR------------------- 101
            +   RKVFD+M  +  VSW+ MIG YA+  L  +AI LFR                   
Sbjct: 125 CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHV 184

Query: 102 -------------QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
                        +MQ+SGV  D++TM ++L ACT LGALE+GKW+  +IEK+ +   V 
Sbjct: 185 EDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVA 244

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L  AL+DM+AKCG ++ A+++F+ M  + +++WT++I GLAM G+GL+A+ LF EM  + 
Sbjct: 245 LGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSE 304

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD + FVG+L+ACSH GLV++G  YF+SM N +GI P IEHYGCMVDML R+GR+ EA
Sbjct: 305 VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEA 364

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
            + IQ MP+  +  +   L+SAC   G L +AE   ++LI  +P +   YVLLS+IY+ +
Sbjct: 365 EDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSM 424

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             WE   K+RE+M +R +KK PG + IE+   ++EFV GD SH QS EIYE LD+M R++
Sbjct: 425 KNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRL 484

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K AGYVP  SEVL D++E++KE+ L+ HSEKLAIAF LL T PGTPIR+VKNLRVC+DCH
Sbjct: 485 KSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCH 544

Query: 449 SATKFISKIYNREIVVRDRHRFHHF 473
           SA KFIS++YNREI+VRDR+RFHHF
Sbjct: 545 SAMKFISEVYNREIIVRDRNRFHHF 569



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 39/270 (14%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R VF+++    + + +++I GY    L   AI  ++ M + G+ PD  T  ++ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            +C   G L  GK +     K        + N L++M++ CG +  A K+F  M  +++V
Sbjct: 86  KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 180 SWTSVIAGLAMHGRGLEAV--------------------------------ALFEEMLEA 207
           SW ++I   A      EA+                                +LF EM  +
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           GV  D V    LL AC+H G ++ G+     ++ +  I   +     +VDM  + G ++ 
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIES 261

Query: 268 AHEFIQKMPIEANPIIWRTLIS--ACCARG 295
           A    Q+MP E + + W  LI   A C +G
Sbjct: 262 AMRVFQEMP-EKDVMTWTALIVGLAMCGQG 290



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 42/185 (22%)

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           F++    ++ V  C AL D     G +  A  +F  +   T  +  S+I G        +
Sbjct: 7   FVDPFSASKIVAFC-ALHD----SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQ 61

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSAC--------------------------------S 224
           A+  ++ M+  G+ PD   F  L  +C                                S
Sbjct: 62  AILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYS 121

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           +CG +   R+ FD M N       +  +  M+    +     EA +  ++M I +N   W
Sbjct: 122 NCGCLVSARKVFDKMVNK-----SVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCW 176

Query: 285 RTLIS 289
             +I+
Sbjct: 177 NIMIN 181


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/504 (46%), Positives = 339/504 (67%), Gaps = 32/504 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E+ +SP+ +T  FVLKAC+ + D+  GK VHG V K     ++ +QN +VH+Y  C G I
Sbjct: 106 EFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALC-GEI 164

Query: 63  ELGRKVFDEMSERDSV-------------------------------SWSAMIGGYARLG 91
            + RKVFD+M +RD +                               SW++MIGGYA+ G
Sbjct: 165 GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
            S +AIDLF +M+ +G+ P+E+T+V VL AC D+G L +G+ +  F  +    +++ +CN
Sbjct: 225 KSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCN 284

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
            LIDM+ KCG ++ A ++F +M  RT+VSW+++IAGLA HGR  +A+ALF +M+  GV P
Sbjct: 285 TLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP 344

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V F+G+L ACSH G+V+KGR+YF SM  D+GI+P+IEHYGCMVD+  R+G ++EAHEF
Sbjct: 345 NAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEF 404

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I  MPI  N ++W  L+  C     +KLAE  T+ L   +P+++  YV+LS+IYA+  RW
Sbjct: 405 IMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRW 464

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E   ++R++M  RG+KK PG + I ++  +Y FV GD +H Q++EI++  +++ ++MK  
Sbjct: 465 EDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLK 524

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP TS VLLD+ E+ KE  L +HSEKLA+ F L+KT PGT IRI+KNLRVC DCH+A 
Sbjct: 525 GYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAAL 584

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           K IS +  REIVVRDR+RFH FK+
Sbjct: 585 KIISVVSTREIVVRDRNRFHCFKN 608



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 9/196 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ PN+ T   VL ACA +G+L LG+ +H    +  +  +I V NTL+ MY  C G
Sbjct: 236 MEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC-G 294

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++FD M ER  VSWSAMI G A  G + DA+ LF +M  +GV P+ +T + +L 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+ +G +E G K+  S      +   +     ++D+F++ G + +A +   +M    NG
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414

Query: 176 RTIVSWTSVIAGLAMH 191
              V W +++ G  +H
Sbjct: 415 ---VVWGALLGGCKVH 427



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +F  +   +   W+  +  +A      DAI LF +++   + PD  T   VL AC+ 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC------------------------ 160
           L  +  GK V  ++EK  +  ++ L N ++ ++A C                        
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 161 -------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                  GD + A KLF  M  R + SWTS+I G A  G+  EA+ LF EM +AG+ P++
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V  V +L AC+  G +  GR   D   N  G    I     ++DM  + G +++A     
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFD 304

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
            M  E   + W  +I+   A G  + A ++  ++I  
Sbjct: 305 NME-ERTVVSWSAMIAGLAAHGRAEDALALFNKMINT 340


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/471 (48%), Positives = 331/471 (70%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+  T+PF+ KA A + D++LG+ +H  V++  F     VQN+LVHMY S  G +  
Sbjct: 131 SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMY-SVLGSLXS 189

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+ MS RD V+W+++I G+A  G+  +A+ L+R+M   GV PD  TMV++LSAC +
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL +G+ V  ++ K  + ++    NAL+D+++KCG+   A K+F  M  R++VSWTS+
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA++G G EA+ LF E+   G+ P ++ FVG+L ACSHCG++D+G  YF  MK ++G
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P+IEH+GCMVD+LCR+G+V +A+++I+ MP+  N +IWRTL+ AC   G L+L E   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             +   E  H  ++VLLS++YA   RW     +R++M  +G+KK PG +L+EL N +YEF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GD+SH QS+E Y ML ++ + +K  GYVP T  VL DI EE+KE AL+ H+EK+AIAF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TPPGTPIRI+KNLRVC DCH A K ISK++ REI+VRDR RFHHFKD
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKD 600



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 15  FVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNT-----LVHMYGSCEGGIELGRKV 68
           F+L+ C  +  L    +S    +  F     +  QN      L+    S    +    ++
Sbjct: 32  FILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQI 91

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGA 127
           F+++   +  +W+ MI G+A     + A++LF QM   S + PD  T   +  A   L  
Sbjct: 92  FNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMD 151

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + +G+ + S + +   +    + N+L+ M++  G +  A ++F  M+ R  V+W SVI G
Sbjct: 152 VSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVING 211

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A++G   EA+ L+ EM   GV PD    V LLSAC   G +  G      M    G++ 
Sbjct: 212 FALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK-VGLVQ 270

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                  ++D+  + G  ++A +   +M  E + + W +LI      G
Sbjct: 271 NQHASNALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVNG 317


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/471 (49%), Positives = 331/471 (70%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+  T+PF+ KA A + D++LG+ +H  V++  F     VQN+LVHMY S  G  E 
Sbjct: 131 SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMY-SVFGFAES 189

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+ MS RD V+W+++I G+A  G+  +A+ L+R+M   GV PD  TMV++LSAC +
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL +G+ V  ++ K  + ++    NAL+D+++KCG+   A K+F  M  R++VSWTS+
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA++G G EA+ LF E+   G+ P ++ FVG+L ACSHCG++D+G  YF  MK ++G
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P+IEH+GCMVD+LCR+G+V +A+++I+ MP+  N +IWRTL+ AC   G L+L E   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             +   E  H  ++VLLS++YA   RW     +R++M  +G+KK PG +L+EL N +YEF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GD+SH QS+E Y ML ++ + +K  GYVP T  VL DI EE+KE AL+ H+EK+AIAF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TPPGTPIRI+KNLRVC DCH A K ISK++ REI+VRDR RFHHFKD
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKD 600



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 15  FVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNT-----LVHMYGSCEGGIELGRKV 68
           F+L+ C  +  L    +S    +  F     +  QN      L+    S    +    ++
Sbjct: 32  FILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQI 91

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGA 127
           F+++   +  +W+ MI G+A     + A++LF QM   S + PD  T   +  A   L  
Sbjct: 92  FNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMD 151

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + +G+ + S + +   +    + N+L+ M++  G  + A ++F  M+ R  V+W SVI G
Sbjct: 152 VSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVING 211

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A++G   EA+ L+ EM   GV PD    V LLSAC   G +  G      M    G++ 
Sbjct: 212 FALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK-VGLVQ 270

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                  ++D+  + G  ++A +   +M  E + + W +LI      G
Sbjct: 271 NQHASNALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVGLAVNG 317


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/470 (49%), Positives = 327/470 (69%), Gaps = 4/470 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  TYP +L+ACA +  L  G+ +H    K      + V+N+LVH+YG+C G  E   +
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGAC-GLFESAHR 178

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VFDE+   ER+ VSW++++ G+A  G   + + +FR+M      PD  T+V+VL+AC ++
Sbjct: 179 VFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEI 238

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           G L +G+ V  F+ K  +  +    NALID++AKCG VD A K+F  M  GRT+VSWTS+
Sbjct: 239 GVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSL 298

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA++G G++A+ LF  M    + P ++  VG+L ACSHCGLVD G  YFD MK ++G
Sbjct: 299 IVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYG 358

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH GCMVD+L R+GRV+EAH +I  MP+E N ++WRTL+ AC    +L++ E+  
Sbjct: 359 ITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAW 418

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            RL+  +P H  +YVLLS++YA + RW     +R+ M   G++K PG +L+EL N +YEF
Sbjct: 419 ARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEF 478

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GD+SH ++ +IYEML ++  ++++ GY+P TS VL DI +E+KE ALN HSE+LAIAF
Sbjct: 479 VMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAF 538

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           ALLK+ PGTPIRIVKNLRVC DCH A K ISK+Y+REI+VRDR RFHHFK
Sbjct: 539 ALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFK 588



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE   +P+ FT   VL ACA IG L LG+ VH  V K     + H  N L+ +Y  C G
Sbjct: 216 MLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKC-G 274

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G++  RK+F EM   R  VSW+++I G A  G   DA+ LF  M+   + P EITMV VL
Sbjct: 275 GVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVL 334

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
            AC+  G ++ G ++ +    +  +   +     ++D+  + G V++A     +M     
Sbjct: 335 YACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPN 394

Query: 178 IVSWTSVIAGLAMH 191
            V W +++   AMH
Sbjct: 395 AVVWRTLLGACAMH 408


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/504 (46%), Positives = 337/504 (66%), Gaps = 30/504 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M + GVSPN  T   +L AC+ + DL  GK ++  +       ++ ++N L+ M+ +C  
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGE 258

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I+L RK FD++ ERD VSW+AMI GY R+
Sbjct: 259 MDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRM 318

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A+ LFR+MQ+S V PDE TMV++L+AC  LGALE+G+WV+++I+K  +     + 
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVG 378

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM+ KCG+V KA K+F+ M+ +   +WT++I GLA++G G EA+A+F  M+EA + 
Sbjct: 379 NALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASIT 438

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD++ ++G+L AC+H G+V+KG+ +F SM    GI P + HYGCMVD+L R+GR++EAHE
Sbjct: 439 PDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHE 498

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I  MP++ N I+W +L+ AC     ++LAE   K+++  EP + + YVLL +IYA   R
Sbjct: 499 VIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKR 558

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE   ++R++M +RG+KK PG +L+EL+  +YEFV GD+SH QSKEIY  L+ M + + K
Sbjct: 559 WENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIK 618

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY P TSEV LD+ EEDKE AL +HSEKLAIA+AL+ + PG  IRIVKNLR+C DCH  
Sbjct: 619 AGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHM 678

Query: 451 TKFISKIYNREIVVRDRHRFHHFK 474
            K +S+ YNRE++VRD+ RFHHF+
Sbjct: 679 AKLVSEAYNRELIVRDKTRFHHFR 702



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 173/344 (50%), Gaps = 44/344 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P++FT+PF+LK       L  GK +    +K  F  ++ VQ   +HM+  C  
Sbjct: 98  MLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRL 157

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L RKVFD     + V+W+ M+ GY R+     +  LF +M+  GV P+ +T+V +LS
Sbjct: 158 -VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLS 216

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L  LE GK +  +I   +V R++ L N LIDMFA CG++D+A  +F +M  R ++S
Sbjct: 217 ACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVIS 276

Query: 181 WTSVIAGLAMHG-------------------------------RGLEAVALFEEMLEAGV 209
           WTS++ G A  G                               R +EA+ALF EM  + V
Sbjct: 277 WTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV 336

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFD--SMKNDFGIIPKIEHYGCMVDMLCRSGR 264
            PD+   V +L+AC+H G ++ G   + Y D  S+KND  +         ++DM  + G 
Sbjct: 337 KPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFV------GNALIDMYFKCGN 390

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           V +A +  ++M    +   W  +I      G  + A ++   +I
Sbjct: 391 VGKAKKVFKEMH-HKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 8/287 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-IELGRKVFDEMSE 74
           +L+ C  +  L   K +H   +K     D   Q  ++    + E G +   R+VFD + +
Sbjct: 13  LLEKCKSMYQL---KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQ 69

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
                W+ MI GY+R+    + + ++  M  S + PD  T   +L   T   AL+ GK +
Sbjct: 70  PTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVL 129

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            +   K   + ++ +  A I MF+ C  VD A K+F   +   +V+W  +++G     + 
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQF 189

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYG 253
            ++  LF EM + GV P+ V  V +LSACS    ++ G+  +  +    GI+ + +    
Sbjct: 190 KKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING--GIVERNLILEN 247

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++DM    G + EA      M    + I W ++++     G++ LA
Sbjct: 248 VLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLA 293


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/504 (46%), Positives = 331/504 (65%), Gaps = 30/504 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M +  V P   T   VL AC+ + DL  GK VH  V   +   ++ ++N ++ MY  C  
Sbjct: 210 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 269

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I++ R  FD+M E+D VSW+AMI GY R 
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++LFR MQ + V PDE TMV+VL+AC  LGALE+G+W+ ++I++  +   + + 
Sbjct: 330 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 389

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM+ KCGDVDKA  +FR M+ R   +WT++I GLA++G G +A+ +F  ML+A + 
Sbjct: 390 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 449

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD++ ++G+LSAC+H GLVDKGR+YF  M +  GI P I HYGC+VD+L R+GR+KEA+E
Sbjct: 450 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 509

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MPI+AN I+W  L++ C    E  +AE + K+++  EP + + YVLL +IYA   R
Sbjct: 510 VIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKR 569

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R++M  +G+KK PG +LIE++  ++EFV GD+SH Q+K I   LD+M + +K 
Sbjct: 570 WNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKL 629

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY P  SEV LDI EEDKE+++ +HSEKLAIAF L+ +PPG  IRI KNLR+C DCH+ 
Sbjct: 630 AGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNM 689

Query: 451 TKFISKIYNREIVVRDRHRFHHFK 474
            K +SK+YNRE++VRDR RFHHFK
Sbjct: 690 AKLVSKVYNREVIVRDRTRFHHFK 713



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 44/331 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV P+++T+PF+ K       L  G+ +HG VLK     ++ V   LV MY  C G
Sbjct: 109 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC-G 167

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD   + D ++W+ +I  Y ++G   ++  LF  M+   V P  +T+V VLS
Sbjct: 168 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLS 227

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L  L  GK V S+++   V  ++ L NA+IDM+A CG++D AL +FRSMN R I+S
Sbjct: 228 ACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS 287

Query: 181 WTSVIAGLAMHG-------------------------------RGLEAVALFEEMLEAGV 209
           WT++++G    G                               R  EA+ LF  M    V
Sbjct: 288 WTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 347

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFD--SMKNDFGIIPKIEHYGCMVDMLCRSGR 264
            PD+   V +L+AC+H G ++ G   R Y D   +KND  +         ++DM  + G 
Sbjct: 348 KPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV------RNALIDMYFKCGD 401

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           V +A    ++M  + +   W  +I      G
Sbjct: 402 VDKAESIFREMS-QRDKFTWTAMIVGLAVNG 431



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 14/311 (4%)

Query: 12  TYPFV--LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKV 68
           T+P +  L+ C  +  L   + VH   +K     +  +QN ++    + E G  +  R++
Sbjct: 18  THPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRL 74

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDE+ E +   W+ MI GY+RL      + L+ +M   GV PD  T   +    T   AL
Sbjct: 75  FDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIAL 134

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E G+ +   + K  +  +V +  AL+ M+  CG +D A  +F       +++W  +I+  
Sbjct: 135 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY 194

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G+  E+  LF  M +  V P  V  V +LSACS    +  G++    +KN   +   
Sbjct: 195 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESN 253

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +     M+DM    G +  A    + M    + I W T++S     GE+ +A +   +  
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDK-- 310

Query: 309 GNEPMHESNYV 319
               M E +YV
Sbjct: 311 ----MPEKDYV 317


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/480 (49%), Positives = 330/480 (68%), Gaps = 6/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV  + +TYPFVL ACA +G + LG+  H  VLK  FG D+ V N L+  Y +C G
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNC-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
                  VFDE + RD V+W+ MI  +   GLS  A DL  +M ++  + PDE+TMV+++
Sbjct: 161 SFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLV 220

Query: 120 SACTDLGALEVGKWVESF---IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            AC  LG LE GK++ S+   ++K  +N  + L  AL+DM+AKCG +D AL++FR M  R
Sbjct: 221 PACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 280

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W ++I GLAMHG G +A++LF++M    + PDDV F+ LL ACSH GLVD+G   F
Sbjct: 281 NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF 340

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +MKN F I P++EHYGC+VD+LCR+ +V +A  FI+ MPI+AN ++W TL+ AC + G 
Sbjct: 341 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 400

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
             LAE I +R+I  EP     YV+LS++YA + +W+   K+R+ M  +G++K PG + IE
Sbjct: 401 FDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 460

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNK 415
           L+  I++FV GD+SH Q+++IY M++EM R++    G+VP T+ VL DI EE+KE +L  
Sbjct: 461 LNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFL 520

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIA  L+ TP G+PIRIVKNLRVCNDCHS  K  SK+YNREIV RDR RFHHFK+
Sbjct: 521 HSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKE 580



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 5/270 (1%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K  H  +L+     +    + L+     S  G +   RK+F +M   D    + MI GYA
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           R     +A+ L+  M   GV  D  T   VL+AC  LGA+++G+     + K      + 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           + NALI  +  CG    A  +F     R +V+W  +I      G   +A  L +EM +  
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGR--EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
            + PD+V  V L+ AC+  G +++G+    +    + F I   +     +VDM  + G +
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSI 267

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARG 295
             A +  ++M +  N   W  LI      G
Sbjct: 268 DLALQVFRRMRVR-NVFTWNALIGGLAMHG 296


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/504 (46%), Positives = 331/504 (65%), Gaps = 30/504 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M +  V P   T   VL AC+ + DL  GK VH  V   +   ++ ++N ++ MY  C  
Sbjct: 231 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 290

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I++ R  FD+M E+D VSW+AMI GY R 
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++LFR MQ + V PDE TMV+VL+AC  LGALE+G+W+ ++I++  +   + + 
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 410

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM+ KCGDVDKA  +FR M+ R   +WT++I GLA++G G +A+ +F  ML+A + 
Sbjct: 411 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 470

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD++ ++G+LSAC+H GLVDKGR+YF  M +  GI P I HYGC+VD+L R+GR+KEA+E
Sbjct: 471 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 530

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MPI+AN I+W  L++ C    E  +AE + K+++  EP + + YVLL +IYA   R
Sbjct: 531 VIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKR 590

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R++M  +G+KK PG +LIE++  ++EFV GD+SH Q+K I   LD+M + +K 
Sbjct: 591 WNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKL 650

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY P  SEV LDI EEDKE+++ +HSEKLAIAF L+ +PPG  IRI KNLR+C DCH+ 
Sbjct: 651 AGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNM 710

Query: 451 TKFISKIYNREIVVRDRHRFHHFK 474
            K +SK+YNRE++VRDR RFHHFK
Sbjct: 711 AKLVSKVYNREVIVRDRTRFHHFK 734



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 44/331 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV P+++T+PF+ K       L  G+ +HG VLK     ++ V   LV MY  C G
Sbjct: 130 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC-G 188

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD   + D ++W+ +I  Y ++G   ++  LF  M+   V P  +T+V VLS
Sbjct: 189 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLS 248

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L  L  GK V S+++   V  ++ L NA+IDM+A CG++D AL +FRSMN R I+S
Sbjct: 249 ACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS 308

Query: 181 WTSVIAGLAMHG-------------------------------RGLEAVALFEEMLEAGV 209
           WT++++G    G                               R  EA+ LF  M    V
Sbjct: 309 WTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 368

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFD--SMKNDFGIIPKIEHYGCMVDMLCRSGR 264
            PD+   V +L+AC+H G ++ G   R Y D   +KND  +         ++DM  + G 
Sbjct: 369 KPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV------RNALIDMYFKCGD 422

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           V +A    ++M  + +   W  +I      G
Sbjct: 423 VDKAESIFREMS-QRDKFTWTAMIVGLAVNG 452



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 14/311 (4%)

Query: 12  TYPFV--LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKV 68
           T+P +  L+ C  +  L   + VH   +K     +  +QN ++    + E G  +  R++
Sbjct: 39  THPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRL 95

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDE+ E +   W+ MI GY+RL      + L+ +M   GV PD  T   +    T   AL
Sbjct: 96  FDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIAL 155

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E G+ +   + K  +  +V +  AL+ M+  CG +D A  +F       +++W  +I+  
Sbjct: 156 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY 215

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G+  E+  LF  M +  V P  V  V +LSACS    +  G++    +KN   +   
Sbjct: 216 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESN 274

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +     M+DM    G +  A    + M    + I W T++S     GE+ +A +   +  
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDK-- 331

Query: 309 GNEPMHESNYV 319
               M E +YV
Sbjct: 332 ----MPEKDYV 338


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/471 (48%), Positives = 331/471 (70%), Gaps = 2/471 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  TYPF++KA   + D+ LG+++H  V++  FG  I+VQN+L+H+Y +C G +   
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVFD+M E+D V+W+++I G+A  G   +A+ L+ +M   G+ PD  T+V++LSAC  +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL +GK V  ++ K  + R++   N L+D++A+CG V++A  LF  M  +  VSWTS+I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 186 AGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            GLA++G G EA+ LF+ M    G+ P ++ FVG+L ACSHCG+V +G EYF  M+ ++ 
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+ AC   G+  LAE   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +++  EP H  +YVLLS++YA   RW    KIR+ M + G+KK+PG +L+E+ N ++EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH QS  IY  L EM  +++  GYVP  S V +D+ EE+KE+A+  HSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TP  +PI +VKNLRVC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 4/264 (1%)

Query: 65  GRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSAC 122
             KVF ++ +  +V  W+ +I GYA +G S  A  L+R+M++SG+  PD  T   ++ A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           T +  + +G+ + S + +      + + N+L+ ++A CGDV  A K+F  M  + +V+W 
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           SVI G A +G+  EA+AL+ EM   G+ PD    V LLSAC+  G +  G+     M   
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+   +     ++D+  R GRV+EA     +M ++ N + W +LI      G  K A  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEAIE 309

Query: 303 ITKRLIGNEPMHESNYVLLSHIYA 326
           + K +   E +       +  +YA
Sbjct: 310 LFKYMESTEGLLPCEITFVGILYA 333



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L ACA IG L LGK VH  ++K     ++H  N L+ +Y  C G +E 
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-GRVEE 275

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACT 123
            + +FDEM +++SVSW+++I G A  G   +AI+LF+ M+ + G+ P EIT V +L AC+
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSW 181
             G ++ G ++     E+  +   +     ++D+ A+ G V KA +  +SM  +  +V W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395

Query: 182 TSVIAGLAMHG 192
            +++    +HG
Sbjct: 396 RTLLGACTVHG 406


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/478 (48%), Positives = 327/478 (68%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCE 59
           M+   V P++ T   VL ACA  G + LG+ +H  V     FG  + + N  + +Y  C 
Sbjct: 206 MMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKC- 264

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E+   +F+ +S +D VSW+ +IGGY  + L  +A+ LF++M  SG  P+++TM++VL
Sbjct: 265 GDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 324

Query: 120 SACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC  LGA+++G+W+  +I+K++  V     L  +LIDM+AKCGD++ A ++F SM  ++
Sbjct: 325 PACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKS 384

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           + SW ++I G AMHGR   A  LF  M + G+ PDD+  VGLLSACSH GL+D GR  F 
Sbjct: 385 LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           S+  D+ I PK+EHYGCM+D+L  +G  KEA E I  MP+E + +IW +L+ AC   G L
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNL 504

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +LAES  ++L+  EP +  +YVLLS+IYA   RWE   +IREV++ +GMKK+PG + IE+
Sbjct: 505 ELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEI 564

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D+ ++EF+ GDK H QS+EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HS
Sbjct: 565 DSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 624

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAF L+ T PGT + +VKNLRVC +CH ATK ISKIY REIV RDR RFHHF+D
Sbjct: 625 EKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRD 682



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 173/348 (49%), Gaps = 39/348 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G  PN +T+PF+LK+CA       G+ +H  V+K     D +   +L+ MY     
Sbjct: 74  MVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGR 133

Query: 57  -----------------SC---------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                            SC          G +   RKVFD ++ERD VSW+AMI GY   
Sbjct: 134 LEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVEN 193

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGL 149
               +A++LF++M  + V PDE T+V+VLSAC   G++E+G+ + + ++       S+ +
Sbjct: 194 CGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKI 253

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NA I +++KCGDV+ A  LF  ++ + +VSW ++I G        EA+ LF+EML +G 
Sbjct: 254 VNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE 313

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            P+DV  + +L AC+H G +D GR    Y D  K   G+         ++DM  + G ++
Sbjct: 314 SPNDVTMLSVLPACAHLGAIDIGRWIHVYID--KRLKGVTNGSALRTSLIDMYAKCGDIE 371

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
            AH+    M +  +   W  +I      G    A  +  R+  N  EP
Sbjct: 372 AAHQVFNSM-MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 32/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+   E + + W+ M+ G A        ++++ +M   G  P+  T   +L 
Sbjct: 32  GLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLK 91

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C      E G+ + + + K           +LI M+A+ G ++ A K+F   + R +VS
Sbjct: 92  SCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVS 151

Query: 181 WTSVIAGLAMHG--------------RGL-----------------EAVALFEEMLEAGV 209
            T++I G A  G              R +                 EA+ LF+EM+   V
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V +LSAC+  G ++ GRE    + +  G    ++     + +  + G V+ A 
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIAS 271

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + + W TLI
Sbjct: 272 GLFEGLSCK-DVVSWNTLI 289



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           A+ +F +     ++ W +++ GLA     +  + ++  M+  G  P+   F  LL +C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
               ++GR+    +      + +  H   ++ M  R+GR+++A +       + + +   
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTS-LISMYARNGRLEDARKVFDXSS-QRDVVSCT 153

Query: 286 TLISACCARGELKLAESI 303
            LI+   +RG+++ A  +
Sbjct: 154 ALITGYASRGDVRSARKV 171


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/475 (49%), Positives = 326/475 (68%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+ ++ T   V+ AC  IGD  LGK V G V +     +  +   L+ MY  C G
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKC-G 270

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R++FD M  RD V+WSAMI GY +     +A+ LF +MQ++ V P+++TMV+VLS
Sbjct: 271 EIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLS 330

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S++ ++ ++ +  L  AL+D +AKCG +D A++ F SM  +   +
Sbjct: 331 ACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWT 390

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G+A +GRG EA+ LF  M EAG+ P DV F+G+L ACSH  LV++GR +FDSM 
Sbjct: 391 WTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMA 450

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P++EHYGCMVD+L R+G V EA++FI+ MPIE N +IWR L+S+C     + + 
Sbjct: 451 RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K++I   P H  +YVLLS+IYA   +W+    +R+ M  RG++K PG +LIELD  
Sbjct: 511 EEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGV 570

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF   D  H + +EIY+ ++EM  ++K AGYVP T++V L++ E +KE +++ HSEKL
Sbjct: 571 VFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKL 630

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+K  PG  IR+ KNLRVC DCHSATK ISK+Y+REIVVRDR+ FHHFKD
Sbjct: 631 AIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKD 685



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 167/306 (54%), Gaps = 5/306 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++ T    LK+C+ +  L++G+ V    +K     D  V ++L+HMY SC G +   R V
Sbjct: 119 DQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASC-GDVAAARLV 177

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD   E   V W+A++  Y + G   + +++F+ M   GV  DE+T+V+V++AC  +G  
Sbjct: 178 FDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDA 237

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           ++GKWV   ++++ + R+  L  AL+DM+AKCG++ KA +LF  M  R +V+W+++I+G 
Sbjct: 238 KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGY 297

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
               +  EA+ LF EM  A V P+DV  V +LSAC+  G ++ G+     ++     +  
Sbjct: 298 TQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTT 357

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--ACCARGELKLAESITKR 306
           I     +VD   + G + +A E  + MP++ N   W  LI   A   RG   L    + R
Sbjct: 358 ILGTA-LVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALELFSSMR 415

Query: 307 LIGNEP 312
             G EP
Sbjct: 416 EAGIEP 421


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/475 (48%), Positives = 328/475 (69%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+ ++ T   V+ AC  IGD  LGK V   V +     + ++   L+ MY  C G
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKC-G 269

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R++FD M  RD V+WSAMI GY +     +A+ LF +MQ++ V P+++TMV+VLS
Sbjct: 270 ELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLS 329

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S+I ++ ++ ++ L  AL+D +AKCG +D A++ F SM  +   +
Sbjct: 330 ACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWT 389

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G+A +GRG EA+ LF  M +A + P DV F+G+L ACSH  LV++GR +FDSM 
Sbjct: 390 WTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMT 449

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P+ EHYGC+VD+L R+G + EA++FI+ MPIE N +IWR L+S+C     +++ 
Sbjct: 450 QDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIG 509

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+++   P H  +Y+LLS+IYA + +W+    IR+ M  RG++K PG +LIELD  
Sbjct: 510 EEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGV 569

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           + EF   D  H Q KEIY+ ++EM  ++K AGY+P T++V L+++E +KE +++ HSEKL
Sbjct: 570 VVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKL 629

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+K  PG  IR+ KNLRVC DCHSATK ISK+YNREIVVRDR+RFHHFKD
Sbjct: 630 AIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKD 684



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 170/310 (54%), Gaps = 13/310 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P++ T    LK+C+ +  L++G+ +    +K     D  V ++L+HMY SC   +   
Sbjct: 115 VCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRD-VAAA 173

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +FD + E   V W+A+I  Y + G   + +++F+ M   GV  DEIT+V+V++AC  +
Sbjct: 174 QLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRI 233

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G  ++GKWV  +++++ + R+  L  ALIDM+AKCG++ KA +LF  M  R +V+W+++I
Sbjct: 234 GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMI 293

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKND 242
           +G     +  EA+ALF EM  A V P+DV  V +LSAC+  G ++ G+    Y    +  
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLS 353

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE----LK 298
             II        +VD   + G + +A E  + MP++ N   W  LI      G     L+
Sbjct: 354 LTIILGT----ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALE 408

Query: 299 LAESITKRLI 308
           L  S+ K  I
Sbjct: 409 LFSSMRKASI 418



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G   DA+ LF +M  ++ VCPD+ T+   L +C+ +  L+VG+ ++++  K+ +     +
Sbjct: 97  GHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFV 156

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            ++LI M+A C DV  A  LF ++    +V W ++I     +G  +E V +F+ MLE GV
Sbjct: 157 LSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGV 216

Query: 210 PPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             D++  V +++AC   G    G+   EY D    + G++        ++DM  + G + 
Sbjct: 217 AFDEITLVSVVTACGRIGDAKLGKWVAEYVD----EKGLVRNRNLMTALIDMYAKCGELG 272

Query: 267 EAHEFIQKMPIEANPIIWRTLIS 289
           +A      M    + + W  +IS
Sbjct: 273 KARRLFDGMQ-SRDVVAWSAMIS 294


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/480 (49%), Positives = 325/480 (67%), Gaps = 7/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  VSPN+ T   VL AC  +  L LGK +   V    FG ++ + N LV MY  C G
Sbjct: 250 MQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKC-G 308

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   RK+FD M ++D + W+ MIGGY  L L  +A+ LF  M    V P+++T + VL 
Sbjct: 309 EIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLP 368

Query: 121 ACTDLGALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           AC  LGAL++GKWV ++I+K +     VN +V L  ++I M+AKCG V+ A ++FRSM  
Sbjct: 369 ACASLGALDLGKWVHAYIDKNLKGTGNVN-NVSLWTSIIVMYAKCGCVEVAEQVFRSMGS 427

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R++ SW ++I+GLAM+G    A+ LFEEM+  G  PDD+ FVG+LSAC+  G V+ G  Y
Sbjct: 428 RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRY 487

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F SM  D+GI PK++HYGCM+D+L RSG+  EA   +  M +E +  IW +L++AC   G
Sbjct: 488 FSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
           +++  E + +RL   EP +   YVLLS+IYA   RW+   KIR  ++ +GMKK+PG T I
Sbjct: 548 QVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSI 607

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E+D  ++EF+ GDK H QS+ I+ MLDE+ R +++ G+VP TSEVL D++EE KE AL +
Sbjct: 608 EIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQ 667

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAF L+ T PG+ IRIVKNLRVC +CHSATK ISKI+NREI+ RDR+RFHHFKD
Sbjct: 668 HSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKD 727



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 173/347 (49%), Gaps = 36/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML  G+ PN  T+P + K+CA     +  K +H   LK       HV  +L+HMY     
Sbjct: 118 MLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGE 177

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       EG ++  R++FDE+  +D VSW+AMI GY + 
Sbjct: 178 LRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQS 237

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A+  F +MQ + V P++ TMV+VLSAC  L +LE+GKW+ S++  +   +++ L 
Sbjct: 238 GRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLV 297

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NAL+DM++KCG++  A KLF  M  + ++ W ++I G        EA+ LFE ML   V 
Sbjct: 298 NALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVT 357

Query: 211 PDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV F+ +L AC+  G +D G+    Y D      G +  +  +  ++ M  + G V+ 
Sbjct: 358 PNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEV 417

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEP 312
           A +  + M    +   W  +IS     G  + A  + + +I  G +P
Sbjct: 418 AEQVFRSMG-SRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQP 463



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 39/311 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           +L  C  I  L   K +H  ++K    + +  Q+ L+     S    +     +F  +  
Sbjct: 31  LLAKCPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHH 87

Query: 75  R--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           +  +   W+ +I  ++     T ++ LF QM  SG+ P+  T  ++  +C    A    K
Sbjct: 88  QPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAK 147

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGD------------------------------ 162
            + +   K  ++    +  +LI M+++ G+                              
Sbjct: 148 QLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEG 207

Query: 163 -VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            VD A +LF  +  + +VSW ++IAG    GR  EA+A F  M EA V P+    V +LS
Sbjct: 208 HVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
           AC H   ++ G+ +  S   D G    ++    +VDM  + G +  A +    M  + + 
Sbjct: 268 ACGHLRSLELGK-WIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDV 325

Query: 282 IIWRTLISACC 292
           I+W T+I   C
Sbjct: 326 ILWNTMIGGYC 336


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/469 (50%), Positives = 326/469 (69%), Gaps = 1/469 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V PN+ T   VL ACA   DL   K VH  + +   G    + + L+ +Y  C G   L
Sbjct: 233 SVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKC-GCYPL 291

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +F++M E++   W+ MI G+       +A+ LF +MQ+SGV  D++TM ++L ACT 
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGALE+GKW+  +IEK+ +   V L  AL+DM+AKCG ++ A+++F+ M  + +++WT++
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 411

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLAM G+GL+A+ LF EM  + V PD + FVG+L+ACSH GLV++G  YF+SM N +G
Sbjct: 412 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 471

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P IEHYGCMVDML R+GR+ EA + IQ MP+  +  +   L+SAC   G L +AE   
Sbjct: 472 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAA 531

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           ++LI  +P +   YVLLS+IY+ +  WE   K+RE+M +R +KK PG + IE+   ++EF
Sbjct: 532 QQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEF 591

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GD SH QS EIYE LD+M R++K AGYVP  SEVL D++E++KE+ L+ HSEKLAIAF
Sbjct: 592 VKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAF 651

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            LL T PGTPIR+VKNLRVC+DCHSA KFIS++YNREI+VRDR+RFHHF
Sbjct: 652 GLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHF 700



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 163/297 (54%), Gaps = 8/297 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P++FT+P + K+C   G L  GK +H    K  F  D ++QNTL++MY +C G
Sbjct: 131 MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNC-G 186

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD+M  +  VSW+ MIG YA+  L  +AI LFR+M+I+ V P+EIT+V VL+
Sbjct: 187 CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLT 246

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC     LE  K V  +I++  +     L +AL+D++ KCG    A  LF  M  + +  
Sbjct: 247 ACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFC 306

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I G        EA++LF EM  +GV  D V    LL AC+H G ++ G+     ++
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 366

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--ACCARG 295
            +  I   +     +VDM  + G ++ A    Q+MP E + + W  LI   A C +G
Sbjct: 367 KE-KIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQG 421



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 15/277 (5%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           L+ C  +  L   K +H  +L+   F D       +        G +   R VF+++   
Sbjct: 47  LEKCTTMSQL---KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            + + +++I GY    L   AI  ++ M + G+ PD  T  ++  +C   G L  GK + 
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLH 160

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
               K        + N L++M++ CG +  A K+F  M  +++VSW ++I   A      
Sbjct: 161 CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPH 220

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHY 252
           EA+ LF  M  A V P+++  V +L+AC+    ++  ++   Y D     F  +      
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT---- 276

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             ++D+ C+ G    A +   KMP E N   W  +I+
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMIN 312


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/471 (48%), Positives = 331/471 (70%), Gaps = 2/471 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  TYPF+LKA   + D+ LG+++H  V++  FG  I+VQN+L+H+Y +C G +   
Sbjct: 117 VEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVFD+M E+D V+W+++I G+A  G   +A+ L+ +M + G+ PD  T+V++LSAC  +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKI 235

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL +GK    ++ K  + R++   N L+D++A+CG V++A  LF  M  +  VSWTS+I
Sbjct: 236 GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 186 AGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            GLA++G G EA+ LF+ M  + G+ P ++ FVG+L ACSHCG+V +G EYF  M  ++ 
Sbjct: 296 VGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYK 355

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH+GCMVD+L R+G+VK+A+E+I KMP++ N +IWRTL+ AC   G+  LAE   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELAR 415

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +++  EP H  +YVLLS++YA   RW    KIR+ M + G++K+PG +L+E+ N ++EF
Sbjct: 416 MKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEF 475

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH Q+  IY  L EM  +++  GYVP  S V +D+ EE+KE+AL  HSEK+AIAF
Sbjct: 476 LMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAF 535

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TP   PIR+VKNL+VC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 536 MLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 136/264 (51%), Gaps = 4/264 (1%)

Query: 65  GRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSAC 122
             KVF ++ +  +V  W+ +I GYA +G S  A+ L+R+M+ SG V PD  T   +L A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +  + +G+ + S + +      + + N+L+ ++A CGDV  A K+F  M  + +V+W 
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           SVI G A +G+  EA+AL+ EM   G+ PD    V LLSAC+  G +  G+ +   M   
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK- 250

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+   +     ++D+  R GRV+EA     +M ++ N + W +LI      G  K A  
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGLGKEAIE 309

Query: 303 ITKRLIGNEPMHESNYVLLSHIYA 326
           + K +   E +       +  +YA
Sbjct: 310 LFKNMESKEGLLPCEITFVGILYA 333



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 107/191 (56%), Gaps = 4/191 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L ACA IG L LGK  H  ++K     ++H  N L+ +Y  C G +E 
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARC-GRVEE 275

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACT 123
            + +FDEM +++SVSW+++I G A  GL  +AI+LF+ M+   G+ P EIT V +L AC+
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACS 335

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSW 181
             G ++ G ++     E+  +   +     ++D+ A+ G V KA +    M  +  +V W
Sbjct: 336 HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIW 395

Query: 182 TSVIAGLAMHG 192
            +++    +HG
Sbjct: 396 RTLLGACTVHG 406


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/477 (48%), Positives = 330/477 (69%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V PNK T   VL AC       LGK +   V    FG ++ + N L+ MY  C G
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC-G 312

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             ++ R++FD + E+D +SW+ MIGGY+ L L  +A+ LF  M  S V P+++T + +L 
Sbjct: 313 ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILH 372

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC  LGAL++GKWV ++I+K + N S   L  +LIDM+AKCG ++ A ++FRSM+ R + 
Sbjct: 373 ACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLA 432

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           SW ++++G AMHG    A+ALF EM+  G+  PDD+ FVG+LSAC+  GLVD G +YF S
Sbjct: 433 SWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRS 492

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+GI PK++HYGCM+D+L R+ + +EA   ++ M +E +  IW +L+SAC A G ++
Sbjct: 493 MIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVE 552

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
             E + +RL   EP +   +VLLS+IYA   RW+   +IR  ++ +GMKK+PG T IE+D
Sbjct: 553 FGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEID 612

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +++EF+ GDK H +   IY+ML+E+ + +++ G+VP TSEVL D++EE KE AL++HSE
Sbjct: 613 GDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSE 672

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAI+F L+KT PGT IRIVKNLRVC +CHSATK ISKI+NREI+ RDR+RFHHFKD
Sbjct: 673 KLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 729



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 170/338 (50%), Gaps = 31/338 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML YGV PN  T+PF+ K+C      + GK +H   LK     + HV  +++HMY S   
Sbjct: 122 MLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGE 181

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G ++  R++FDE+  +D VSW+AMI GY + 
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +AI  F +MQ + V P++ TMV VLSAC    + E+GKW+ S++       ++ L 
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM+ KCG+ D A +LF  +  + ++SW ++I G +      EA+ALFE ML + V 
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+DV F+G+L AC+  G +D G+     +  +         +  ++DM  + G ++ A  
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
             + M    N   W  ++S     G  + A ++   ++
Sbjct: 422 VFRSMH-SRNLASWNAMLSGFAMHGHAERALALFSEMV 458



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 40/311 (12%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDE 71
           Y  +L+ C  I   N  K +H  ++K    + + VQ+ L+H    S  G +     +F+E
Sbjct: 31  YLNLLEKCKNI---NTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87

Query: 72  MSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
             +    +   W+++I GY+       ++ LF +M   GV P+  T   +  +CT   A 
Sbjct: 88  NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-------------------------- 162
             GK + +   K  ++ +  +  ++I M+A  G+                          
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 163 -----VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                +D A +LF  +  + +VSW ++I+G    GR  EA+  F EM EA V P+    V
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            +LSAC H    + G+ +  S   D G    ++    ++DM C+ G    A E    +  
Sbjct: 268 VVLSACGHTRSGELGK-WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE- 325

Query: 278 EANPIIWRTLI 288
           E + I W T+I
Sbjct: 326 EKDVISWNTMI 336


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/481 (48%), Positives = 324/481 (67%), Gaps = 7/481 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ----FGDDIHVQNTLVHMYG 56
           M+   V P++ T   V+ ACA  G + LG+ VH  V        F   + + N L+ +Y 
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYS 246

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            C G +E    +F+ +S +D VSW+ +IGGY    L  +A+ LF++M  SG CP+++T++
Sbjct: 247 KC-GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLL 305

Query: 117 TVLSACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +VL AC  LGA+++G+W+  +I+K++  V     L  +LIDM+AKCGD++ A ++F SM 
Sbjct: 306 SVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R++ SW ++I G AMHGR   A  LF  M    V PDD+ FVGLLSACSH GL+D GR+
Sbjct: 366 YRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F SM  D+ + PK+EHYGCM+D+L  SG  KEA E I  MP+E + +IW +L+ AC   
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKH 485

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G L+LAES  ++LI  EP +  +YVLLS+IYA   RWE   ++R V++ +GMKK+PG + 
Sbjct: 486 GNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSS 545

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE+D+ ++EF+ GDK H + +EIY ML+EM  ++++AG+ P TSEVL ++ EE KE AL 
Sbjct: 546 IEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALR 605

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REIV RDR RFHHF+
Sbjct: 606 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFR 665

Query: 475 D 475
           D
Sbjct: 666 D 666



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 42/351 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G  PN +++PF+LK+CA       G+ +H  VLK   G D +V  +L+ MY     
Sbjct: 55  MVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGG 114

Query: 57  -----------------SC---------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                            SC          G     RKVFDE++ERD VSW+AMI GY   
Sbjct: 115 LEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN 174

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK----WVESFIEKQMVNRS 146
           G   +A++LF++M  + V PDE T+V+V+SAC   G++E+G+    WV+   +    + S
Sbjct: 175 GRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSS 234

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + NALID+++KCGDV+ A  LF  ++ + +VSW ++I G        EA+ LF+EML 
Sbjct: 235 LKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLR 294

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           +G  P+DV  + +L AC+H G +D GR    Y D  K   G+  +      ++DM  + G
Sbjct: 295 SGECPNDVTLLSVLPACAHLGAIDIGRWIHVYID--KKLKGVTNETSLRTSLIDMYAKCG 352

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
            ++ AH+    M +  +   W  +I      G    A  +  R+ GN  EP
Sbjct: 353 DIEAAHQVFNSM-LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 35/262 (13%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M+ G+A       A++++ +M   G  P+  +   +L 
Sbjct: 13  GLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72

Query: 121 ACTDLGALEVGKWVESFIEK--------------QMVNRSVGL----------------- 149
           +C    A E G+ + + + K               M  R+ GL                 
Sbjct: 73  SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           C ALI  +A  GD   A K+F  +  R +VSW ++I G   +GR  EA+ LF+EM+   V
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            PD+   V ++SAC+  G ++ GR+   + D   +D G    ++    ++D+  + G V+
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 267 EAHEFIQKMPIEANPIIWRTLI 288
            A    + +  + + + W TLI
Sbjct: 253 TAFGLFEGLSCK-DVVSWNTLI 273


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/521 (44%), Positives = 333/521 (63%), Gaps = 47/521 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           MLE  V P+ +TYPF+ K       L LG+ +H  V+K+    ++   N L++MY  C  
Sbjct: 105 MLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGL 164

Query: 59  ---------------------------------------------EGGIELGRKVFDEMS 73
                                                         G ++  RK F +M 
Sbjct: 165 IDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMP 224

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           ERD VSW+AMI GY RL    +A+ LFR+MQ S + PDE TMV+VL+AC  LGALE+G+W
Sbjct: 225 ERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEW 284

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           + ++I+K  V     + NALIDM+ KCG+V+ AL +F ++  R   +WT+++ GLA++G 
Sbjct: 285 IRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
           G EA+ +F +ML+A V PD+V +VG+LSAC+H G+VD+G+++F SM    GI P I HYG
Sbjct: 345 GEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYG 404

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           CMVD+L ++G +KEAHE I+ MP++ N I+W  L+ AC    + ++AE   ++++  EP 
Sbjct: 405 CMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPN 464

Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
           + + YVL  +IYA   +W+K  ++R+VM  RG+KK PG +LIE++  ++EFV GD+SH Q
Sbjct: 465 NGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQ 524

Query: 374 SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT 433
           +KEIY  L++M   +K AGY P TSEV LDI EEDKE+A+ +HSEKLAIAF L+ + PG 
Sbjct: 525 TKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGV 584

Query: 434 PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            IRIVKNLR+C DCH   K +SK+Y+RE++VRDR RFHHF+
Sbjct: 585 TIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFR 625



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 61/320 (19%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H   +K     +  +QN ++    S E G +   R++FD + E    SW+ M  GY+
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           R+      + L+ +M    V PD  T   +    T   AL++G+ +   + K  ++ +V 
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 149 LCNALIDMFAKC------------------------------------------------ 160
             NALI+M++ C                                                
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G VD A K F  M  R  VSWT++I G        EA+ LF EM  + + PD+   V +L
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 221 SACSHCGLVDKG---REYFD--SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           +AC+  G ++ G   R Y D   +KND  +         ++DM  + G V+ A      +
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFV------GNALIDMYFKCGNVEMALSIFNTL 324

Query: 276 PIEANPIIWRTLISACCARG 295
           P + +   W  ++      G
Sbjct: 325 P-QRDKFTWTAMVVGLAING 343


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/499 (46%), Positives = 329/499 (65%), Gaps = 30/499 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------ 59
           V P+  T   VL AC+ + DLN+GK VH  V   +      ++N L+ MY +C       
Sbjct: 216 VLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTAL 275

Query: 60  ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                                   G + L R  FD+M ERD VSW+AMI GY ++    +
Sbjct: 276 GIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKE 335

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
            + LFR+MQ + + PDE TMV++L+AC  LGALE+G+W++++I+K  +     + NALID
Sbjct: 336 VLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALID 395

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+  CG+V+KA+++F +M  R  +SWT+VI GLA++G G EA+ +F +ML+A + PD+V 
Sbjct: 396 MYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVT 455

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            +G+L AC+H G+VDKG+++F  M    GI P + HYGCMVD+L R+G +KEAHE I+ M
Sbjct: 456 CIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNM 515

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ N I+W +L+ AC    + ++AE   ++++  EP + + YVLL +IYA   RWEK  
Sbjct: 516 PVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLH 575

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
           ++R++M  RG+KK PG +LIE++  ++EFV GD+ H QSKEIY  LDEM   +K AGY P
Sbjct: 576 EVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSP 635

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            TSEV LDI EE+KE A+ +HSEKLAIAF L+ + PG  IRIVKNLR+C DCH   K +S
Sbjct: 636 DTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVS 695

Query: 456 KIYNREIVVRDRHRFHHFK 474
           K+YNRE++VRDR RFHHF+
Sbjct: 696 KVYNREVIVRDRTRFHHFR 714



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 171/331 (51%), Gaps = 44/331 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV P+++TYPF+LK       +  G+ +H  ++K  F  ++ VQN L+H+Y S  G
Sbjct: 110 MLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLY-SLSG 168

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + R VFD  S+ D V+W+ MI GY R     +++ LF +M+   V P  IT+V+VLS
Sbjct: 169 EVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLS 228

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L  L VGK V  +++   +     L NALIDM+A CGD+D AL +F +M  R ++S
Sbjct: 229 ACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVIS 288

Query: 181 WTSVIAGLAMHGR-GL------------------------------EAVALFEEMLEAGV 209
           WT+++ G    G+ GL                              E ++LF EM  A +
Sbjct: 289 WTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANI 348

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHY--GCMVDMLCRSGR 264
            PD+   V +L+AC+H G ++ G   + Y D  KN+     KI+ +    ++DM    G 
Sbjct: 349 KPDEFTMVSILTACAHLGALELGEWIKAYID--KNEI----KIDSFVGNALIDMYFNCGN 402

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           V++A      MP   + I W  +I      G
Sbjct: 403 VEKAIRIFNAMP-HRDKISWTAVIFGLAING 432



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 2/248 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  R VFD M   +   W+ MI GY+R+G    A+ ++ +M   GV PDE T   +L
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
              T   A++ G+ +   I K   + +V + NALI +++  G+V  A  +F   +   +V
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W  +I+G     +  E++ LF+EM    V P  +  V +LSACS    ++ G+     +
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K D  I P       ++DM    G +  A      M    + I W  +++     G++ L
Sbjct: 247 K-DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMK-SRDVISWTAIVTGFTNLGQVGL 304

Query: 300 AESITKRL 307
           A +   ++
Sbjct: 305 ARNYFDKM 312


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/470 (49%), Positives = 324/470 (68%), Gaps = 4/470 (0%)

Query: 8    PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
            P+  TYP +++ACA +  L  G+ +H    K  F   + VQN+LVH+YG+C G  E   K
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC-GLFESAHK 860

Query: 68   VFDEMSER--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            VFDEM  R  + VSW++M+  +A  G   + + +F +M      PD  T+V+VL+AC + 
Sbjct: 861  VFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEF 920

Query: 126  GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
            GAL +G+ V  ++EK  +  +  + NALID++AKCG V+ A ++F  M  GRT+VSWTS+
Sbjct: 921  GALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 980

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I GLA +G G EA+ LF  M    + P ++  VG+L ACSHCGLVD G  YFD MK D+G
Sbjct: 981  IVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYG 1040

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P+IEH GCMVD+L R+GRV+EA+++I  MP+E N ++WRTL+ +C    +L+L +   
Sbjct: 1041 ISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAW 1100

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +RL+  +P H  +YVLLS++YA +  W     +R+ M K  ++K PG +L+EL N +YEF
Sbjct: 1101 ERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEF 1160

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
            V GD+SH +S++IYEML E+  ++++ GY+P TS VL DI EE+KE ALN HSE+LAIAF
Sbjct: 1161 VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAF 1220

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            ALLK+ PG PIRI+KNLR+C DCH A   ISK+Y+REI+VRDR RFHHF+
Sbjct: 1221 ALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQ 1270



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML    +P+ FT   VL ACA  G L LG+ VH  V K    ++ HV N L+ +Y  C G
Sbjct: 898  MLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC-G 956

Query: 61   GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +   R++F+EM   R  VSW+++I G A  G   +A++LF  M+   + P EITMV VL
Sbjct: 957  SVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVL 1016

Query: 120  SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
             AC+  G ++ G ++ +   E   ++  +     ++D+  + G V++A     +M     
Sbjct: 1017 YACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPN 1076

Query: 178  IVSWTSVIAGLAMHGR 193
             V W +++   AMH +
Sbjct: 1077 AVVWRTLLGSCAMHKK 1092


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/475 (48%), Positives = 315/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  + PN+ T   ++  C   G L LGK +H  +L+  F   + +   LV MYG C  
Sbjct: 289 MQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD 348

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD    RD + W+AM+  YA+      A +LF QM+ SGV P ++T+V++LS
Sbjct: 349 -IRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C   GAL++GKWV S+I+K+ V     L  AL+DM+AKCGD++ A +LF     R I  
Sbjct: 408 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 467

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G AMHG G EA+ +F EM   GV P+D+ F+GLL ACSH GLV +G++ F+ M 
Sbjct: 468 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 527

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + FG++P+IEHYGCMVD+L R+G + EAHE I+ MPI+ N I+W  L++AC      +L 
Sbjct: 528 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 587

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L+  EP +    VL+S+IYA   RW     +R+ M   GMKK PG ++IE++  
Sbjct: 588 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 647

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GD+SH Q + I EML EM RK+ +AGYVP TS VLL+I+EE+KE AL  HSEKL
Sbjct: 648 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 707

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T P TPIRIVKNLRVCNDCH+ATK +SKIY R I+VRDR+RFHHF++
Sbjct: 708 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFRE 762



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 147/284 (51%), Gaps = 7/284 (2%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
            F  P VLKAC  +    LGK +HG VLK     D+ V N L+ MYG C   +E  R VF
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC-ACVEYARLVF 152

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D+M ERD VSWS MI   +R      A++L R+M    V P E+ MV++++   D   + 
Sbjct: 153 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 212

Query: 130 VGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +GK + +++ +   N  +G+    AL+DM+AKCG +  A +LF  +  +T+VSWT++IAG
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGII 246
                R  E   LF  M E  + P+++  + L+  C   G +  G++     ++N F + 
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV- 331

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             +     +VDM  +   ++ A           + +IW  ++SA
Sbjct: 332 -SLALATALVDMYGKCSDIRNARALFDSTQ-NRDVMIWTAMLSA 373



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 153/296 (51%), Gaps = 13/296 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT--LVHMYGSCEGGIE 63
           V P++     ++   A   ++ +GK++H  V++    + + V  T  L+ MY  C G + 
Sbjct: 191 VRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC-GHLG 249

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           L R++F+ ++++  VSW+AMI G  R     +   LF +MQ   + P+EITM++++  C 
Sbjct: 250 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECG 309

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
             GAL++GK + ++I +   + S+ L  AL+DM+ KC D+  A  LF S   R ++ WT+
Sbjct: 310 FTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTA 369

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMK 240
           +++  A      +A  LF++M  +GV P  V  V LLS C+  G +D G+    Y D  +
Sbjct: 370 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 429

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHE-FIQKMPIEANPIIWRTLISACCARG 295
            +   I        +VDM  + G +  A   FI+   I  +  +W  +I+     G
Sbjct: 430 VEVDCILNT----ALVDMYAKCGDINAAGRLFIE--AISRDICMWNAIITGFAMHG 479



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +VL AC  +   ++GK +  F+ K+ ++R V + NAL+ M+ +C  V+ A  +F  M  R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--- 233
            +VSW+++I  L+ +     A+ L  EM    V P +VA V +++  +    +  G+   
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 234 EYFDSMKNDFGIIPKIEHYG-----CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            Y     N+       EH G      ++DM  + G +  A +    +  +   + W  +I
Sbjct: 219 AYVIRNSNN-------EHMGVPTTTALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMI 270

Query: 289 SACCARGELKLAESITKRL 307
           + C     L+    +  R+
Sbjct: 271 AGCIRSNRLEEGTKLFIRM 289


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/472 (47%), Positives = 328/472 (69%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P++ T   ++ ACA +G+L  GK +H    +    +++ V N ++ MY  C+  IE 
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDD-IES 64

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            ++VF+ + E+D +SW++M+ G A+ G   +++ LFR+MQ+  + PDEIT+V VLSAC  
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            GAL+ GK++   I+K  +N  + L  AL+DM+AKCG +D AL++FR M  R + +W ++
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM 184

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLAMHG G +A++LF++M    + PDDV F+ LL ACSH GLVD+G   F +MKN F 
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 244

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P++EHYGC+VD+LCR+ +V +A  FI+ MPI+AN ++W TL+ AC + G   LAE I 
Sbjct: 245 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIX 304

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           +R+I  EP     YV+LS++YA + +W+   K+R+ M  +G++K PG + IEL+  I++F
Sbjct: 305 RRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 364

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           V GD+SH Q+++IY M++EM R++    G+VP T+ VL DI EE+KE +L  HSEKLAIA
Sbjct: 365 VAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIA 424

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             L+ TP G+PIRIVKNLRVCNDCHS  K  SK+YNREIV RDR RFHHFK+
Sbjct: 425 LGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKE 476


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/475 (46%), Positives = 326/475 (68%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+SPN +T+ FVLKAC  +  L  G+ +H  ++K     +  + N L+ +Y +C G
Sbjct: 98  MFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAAC-G 156

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    +FDEM E DS SWS M+ GYA+ G + +A+ LFR+MQ   V  D  T+ +V+ 
Sbjct: 157 CMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVG 216

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C DLGAL++GKWV S+++K+ V   V L  AL+ M++KCG +D ALK+F+ M  R + +
Sbjct: 217 VCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTA 276

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IAG A+HG G +A+ LF+ M  +   P+ V F  +LSACSH GLV+KG + F++M 
Sbjct: 277 WSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMW 336

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ I P+I+HYGCMVD+ CR+G V  AH+FIQ MPIE N ++WRTL+ AC   G   L 
Sbjct: 337 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLG 396

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I+++++  +P    NYVL+S++YA L RW    ++R +M  +  KK  G + IE++  
Sbjct: 397 EHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFM 456

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F+ GD+SH + ++IY ML +M RK+K+ G+V +T +VL DI+EE+KE AL  HSE+L
Sbjct: 457 VHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERL 516

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ LL TP G+PIRIVKNLRVC DCH   K IS++YNREI+VRDR RFHHF++
Sbjct: 517 AIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRE 571



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 6/281 (2%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSER 75
           +K C  +GDL   K++   +++     D  + + L+     +  G +    ++F      
Sbjct: 14  IKRCTRVGDL---KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP 70

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +   W+ +I GY+       AI L+R M + G+ P+  T   VL AC  L  L  G+ + 
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           S I K  ++    L N LI ++A CG +D A  +F  M      SW+++++G A +G+ +
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAV 190

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA+ LF EM    V  D      ++  C   G +D G+ +  S  +  G+   +     +
Sbjct: 191 EALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGK-WVHSYMDKEGVKIDVVLGTAL 249

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           V M  + G +  A +  Q M  E +   W T+I+     G 
Sbjct: 250 VGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGH 289


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/470 (49%), Positives = 324/470 (68%), Gaps = 4/470 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  TYP +++ACA +  L  G+ +H    K  F   + VQN+LVH+YG+C G  E   K
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGAC-GLFESAHK 172

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VFDEM    R+ VSW++M+  +A  G   + + +F +M      PD  T+V+VL+AC + 
Sbjct: 173 VFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEF 232

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           GAL +G+ V  ++EK  +  +  + NALID++AKCG V+ A ++F  M  GRT+VSWTS+
Sbjct: 233 GALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 292

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA +G G EA+ LF  M    + P ++  VG+L ACSHCGLVD G  YFD MK D+G
Sbjct: 293 IVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYG 352

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH GCMVD+L R+GRV+EA+++I  MP+E N ++WRTL+ +C    +L+L +   
Sbjct: 353 ISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAW 412

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           +RL+  +P H  +YVLLS++YA +  W     +R+ M K  ++K PG +L+EL N +YEF
Sbjct: 413 ERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEF 472

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GD+SH +S++IYEML E+  ++++ GY+P TS VL DI EE+KE ALN HSE+LAIAF
Sbjct: 473 VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAF 532

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           ALLK+ PG PIRI+KNLR+C DCH A   ISK+Y+REI+VRDR RFHHF+
Sbjct: 533 ALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQ 582



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML    +P+ FT   VL ACA  G L LG+ VH  V K    ++ HV N L+ +Y  C G
Sbjct: 210 MLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC-G 268

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +   R++F+EM   R  VSW+++I G A  G   +A++LF  M+   + P EITMV VL
Sbjct: 269 SVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVL 328

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
            AC+  G ++ G ++ +   E   ++  +     ++D+  + G V++A     +M     
Sbjct: 329 YACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPN 388

Query: 178 IVSWTSVIAGLAMHGR 193
            V W +++   AMH +
Sbjct: 389 AVVWRTLLGSCAMHKK 404


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/475 (48%), Positives = 323/475 (68%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V PN+ T   VL ACA   DL + K +H  + +  FG  + +   L+ +Y  C G
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC-G 236

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L R +FD+  E++  SW+ MI G+       +A+ LFR+MQ  G+  D++TM ++L 
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT LGALE+GKW+ ++I+KQ ++  V L  AL+DM+AKCG ++ A+++F  M  + +++
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMT 356

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I GLAM G+   A+  F+EM   GV PD + FVG+L+ACSH G VD+G  +F+SM 
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +GI P IEHYG +VD+L R+GR+ EA E I+ MP+  +  +   L+ AC   G L+ A
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L+  +P H   YVLLS+IY    +WE+  + RE+M +RGM+K PG + IE+   
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGV 536

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EFV GD SH QS EI EML++M  K+K AGYVP  SEVL D+ EE+KE  L+ HSEKL
Sbjct: 537 VHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKL 596

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T  GTPIR+VKNLR+C+DCHSATK ISK+YNREI+VRDR+RFHHFKD
Sbjct: 597 AIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKD 651



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P+++T+P + K+C    +   GK +H    K  F  D + QNTL++MY +C G
Sbjct: 79  MMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNC-G 134

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVL 119
            +   RKVFD+M ++  VSW+ MIG +A+     +A+ LF R M+   V P+E+T+V VL
Sbjct: 135 CLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVL 194

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +AC     L + K +  +I++    R V L   L+D++ KCG V  A  LF     + + 
Sbjct: 195 TACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLF 254

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYF 236
           SW  +I G        EA+ LF EM   G+  D V    LL AC+H G ++ G+    Y 
Sbjct: 255 SWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYI 314

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI--SACCAR 294
              + D  +         +VDM  + G ++ A +   +MP E + + W  LI   A C +
Sbjct: 315 KKQRIDVDVALGT----ALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALILGLAMCGQ 369

Query: 295 GELKL 299
            E  L
Sbjct: 370 AENAL 374


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/452 (50%), Positives = 319/452 (70%), Gaps = 1/452 (0%)

Query: 18  KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDS 77
           +A A + D+  G+ VH   ++  F   + VQNTLVHMY +C G  E   K+F+ M+ER+ 
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC-GHAESAHKLFELMAERNL 61

Query: 78  VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137
           V+W+++I GYA  G   +A+ LFR+M + GV PD  TMV++LSAC +LGAL +G+    +
Sbjct: 62  VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 121

Query: 138 IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
           + K  ++ ++   NAL+D++AKCG + +A K+F  M  +++VSWTS+I GLA++G G EA
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 181

Query: 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257
           + LF+E+   G+ P ++ FVG+L ACSHCG+VD+G +YF  MK ++GI+PKIEHYGCMVD
Sbjct: 182 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 241

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317
           +L R+G VK+AHEFIQ MP++ N ++WRTL+ AC   G L L E    +L+  EP H  +
Sbjct: 242 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 301

Query: 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEI 377
           YVLLS++YA   RW    K+R  M + G+KK PG +L+EL N ++EFV GD+SH Q++EI
Sbjct: 302 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 361

Query: 378 YEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRI 437
           Y  L E+ + +K  GYVP  S VL DI EE+KE AL+ HSEK+AIAF L+ T  G PIR+
Sbjct: 362 YVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRV 421

Query: 438 VKNLRVCNDCHSATKFISKIYNREIVVRDRHR 469
           VKNLRVC DCH A K ISK+++REIVVRDR R
Sbjct: 422 VKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ FT   +L ACA +G L LG+  H  ++K     ++H  N L+ +Y  C G I  
Sbjct: 91  GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKC-GSIRQ 149

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVFDEM E+  VSW+++I G A  G   +A++LF++++  G+ P EIT V VL AC+ 
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWT 182
            G ++ G  + +   E+  +   +     ++D+  + G V +A +  ++M  +   V W 
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 269

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 270 TLLGACTIHG 279


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/476 (47%), Positives = 327/476 (68%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V+PN+ T   VL ACA  G L LG  V   +     G ++ + N L+ MY  C G
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC-G 313

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R +F+ + E+D +SW+ MIGGY+ +    +A+ LFR+MQ S V P+++T V++L 
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373

Query: 121 ACTDLGALEVGKWVESFIEKQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC  LGAL++GKW+ ++I+K+ +   +  L  +LIDM+AKCG+++ A ++F  M  +++ 
Sbjct: 374 ACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLG 433

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+GLAMHG    A+ LF +M + G  PDD+ FVG+LSACSH GLV+ GR+ F SM
Sbjct: 434 SWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM 493

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ I PK++HYGCM+D+L R+G   EA   ++ M ++ +  IW +L+ AC   G ++L
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVEL 553

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K L   EP +   YVLLS+IYA   RW+   +IR  ++ +GMKK+PG + IE+D+
Sbjct: 554 GEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDS 613

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EF+ GDK H QS++IY+MLDE+ + ++KAG+VP TSEVL D++EE KE +L+ HSEK
Sbjct: 614 VVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEK 673

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ T P T IRIVKNLRVC +CHSA K ISKI+NREI+ RDR+RFHHFKD
Sbjct: 674 LAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKD 729



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 183/337 (54%), Gaps = 31/337 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  GV PN +T+PF+LK+CA +G    GK +HG VLK     D  V  +L++MY     
Sbjct: 123 MLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGE 182

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G ++  R++F+E+  RD+VSW+AMI GYA+ 
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A+  F++M+ + V P+E TMVTVLSAC   G+LE+G WV S+IE   +  ++ L 
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM++KCGD+DKA  LF  +  + I+SW  +I G +      EA+ALF +M ++ V 
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+DV FV +L AC++ G +D G+     +   F  +     +  ++DM  + G ++ A +
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
               M  ++    W  +IS     G   +A  + +++
Sbjct: 423 VFAGMKPKSLG-SWNAMISGLAMHGHANMALELFRQM 458



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 37/324 (11%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           +L  C    +L   K +H  ++K    +     + L+     S  G +     +F+ + +
Sbjct: 38  LLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            +   W+ MI G +       AID + +M + GV P+  T   +L +C  +GA + GK +
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGD-------------------------------V 163
              + K  +     +  +LI+M+A+ G+                               +
Sbjct: 155 HGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCL 214

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D A +LF  +  R  VSW ++IAG A  GR  EA+A F+EM  A V P++   V +LSAC
Sbjct: 215 DDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSAC 274

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +  G ++ G  +  S   D G+   +     ++DM  + G + +A +  + +  E + I 
Sbjct: 275 AQSGSLELGN-WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIIS 332

Query: 284 WRTLISACCARGELKLAESITKRL 307
           W  +I         K A ++ +++
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKM 356


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/475 (47%), Positives = 320/475 (67%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE     ++ T   V  AC  +GD NLG+ +     +       ++   LV MY  C G
Sbjct: 263 MLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKC-G 321

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R++FD M  RD V+WSAMI GY +     +A+ +F +MQ + V P+++TMV+VLS
Sbjct: 322 ELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLS 381

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S+I ++ +  +V L  AL+D +AKCG +  A+K F SM  R   +
Sbjct: 382 ACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWT 441

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G+A +GR  EA+ LF  MLEA + P DV F+G+L ACSH  LV++GR +F SM 
Sbjct: 442 WTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMT 501

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P+IEHYGCMVD+L R+G + EA++FI+ MPIE N ++WR L+SAC     +++ 
Sbjct: 502 QDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIG 561

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+++  +P H  NY+LLS+ YA + +W+    +R+ M ++G++KIPG +LIEL+  
Sbjct: 562 EEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGT 621

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+EF   D  H Q  EIYE + EM   +K  GY+P T++  LD++E +K+ +++ HSEKL
Sbjct: 622 IFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKL 681

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+K+ PG  IR+ KNLRVC DCHSATK ISK+YNREI+VRDR+RFHHFKD
Sbjct: 682 AIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKD 736



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 166/297 (55%), Gaps = 5/297 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            VSP++ T    +K+C+ + DL++G+ V     K  F  D  V N+L+HMY SC G +  
Sbjct: 166 AVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASC-GDVVA 224

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F  +  +  ++W+AMI GY + G   + +++F+ M       DE+T+++V +AC  
Sbjct: 225 AHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGR 284

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG   +G+W+  + E++ + RS  L  AL+DM+AKCG++DKA +LF  M+ R +V+W+++
Sbjct: 285 LGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAM 344

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+G     R  EA+A+F EM    V P+DV  V +LSAC+  G ++ G+     ++    
Sbjct: 345 ISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-- 402

Query: 245 IIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +P     G  +VD   + G +K+A +  + MP+  N   W  LI    + G  + A
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKGMASNGRSREA 458



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKW 133
           R + S++ +I  + R G   DA+ LF +M   + V PD+ T+   + +C+ +  L VG+ 
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192

Query: 134 VESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           V+++  K+  MV++ V   N+LI M+A CGDV  A  LF ++  + +++W ++IAG   +
Sbjct: 193 VQAYAFKRGFMVDQFV--LNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G   E V +F+ MLE   P D+V  + + +AC   G  + G ++      + G++     
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNL 309

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
              +VDM  + G + +A     +M    + + W  +IS        + A +I   + G E
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMH-SRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE 368


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/472 (47%), Positives = 328/472 (69%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P++ T   ++ ACA +G+L  GK +H    +    +++ V N ++ MY  C+  IE 
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDD-IES 266

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            ++VF+ + E+D +SW++M+ G A+ G   +A+ LF++MQ++ +  DEIT+V VLSAC  
Sbjct: 267 AQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQ 326

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            GAL+ GK++   I+K  +N  + L  AL+DM+AKCG +D AL++FR M  R + +W ++
Sbjct: 327 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAL 386

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLAMHG G +A++LF++M    + PDDV F+ LL ACSH GLVD+G   F +MKN F 
Sbjct: 387 IGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 446

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P++EHYGC+VD+LCR+ +V +A  FI+ MPI+AN ++W TL+ AC + G   LAE I 
Sbjct: 447 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIG 506

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           +R+I  EP     YV+LS++YA + +W+   K+R+ M  +G++K PG + IEL+  I++F
Sbjct: 507 RRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 566

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           V GD+SH Q+++IY M++EM R++    G+VP T+ VL DI EE+KE +L  HSEKLAIA
Sbjct: 567 VAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIA 626

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             L+ TP G+PIRIVKNLRVCNDCHS  K  SK+YNREIV RDR RFHHFK+
Sbjct: 627 LGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKE 678



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 174/296 (58%), Gaps = 4/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV  + +TYPFVL ACA +G + LG+  H  VLK  FG D+ V N L+  Y +C G
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNC-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
                  VFDE + RD V+W+ MI  +   GLS  A DL  +M ++  + PDE+TMV+++
Sbjct: 161 SFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLV 220

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  LG LE GK++ S+ ++  ++ ++ + NA++DM+ KC D++ A ++F  +  + ++
Sbjct: 221 PACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVL 280

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+++GLA  G   EA+ALF++M    +  D++  VG+LSAC+  G +D+G+ Y   +
Sbjct: 281 SWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGK-YIHLL 339

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            + F I   +     +VDM  + G +  A +  ++M +  N   W  LI      G
Sbjct: 340 IDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHG 394



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 4/284 (1%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K  H  +L+     +    + L+     S  G +   RK+F +M   D    + MI GYA
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           R     +A+ L+  M   GV  D  T   VL+AC  LGA+++G+     + K      + 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           + NALI  +  CG    A  +F     R +V+W  +I      G   +A  L +EM +  
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            + PD+V  V L+ AC+  G +++G+ +  S   + G+   +     ++DM C+   ++ 
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGK-FLHSYSKELGLDENLRVNNAILDMYCKCDDIES 266

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           A E   ++  E + + W +++S     G  + A ++ +++  N+
Sbjct: 267 AQEVFNRIR-EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK 309


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/476 (46%), Positives = 337/476 (70%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G+ P+ +T+P +LKACA    L  G+ +H   +K    ++++V  TL++MY +C  
Sbjct: 112 ILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTAC-N 170

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD++ E   V+++AMI GYAR     +A+ LFR++Q   + P ++TM++VLS
Sbjct: 171 EMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLS 230

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGAL++GKW+  +++K   NR V +  ALIDM+AKCG +D A+ +F +M  R   +
Sbjct: 231 SCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQA 290

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I   A+HG GL+AV+LF+EM +AG  PD++ F+GLL ACSH GLV++G EYF  M+
Sbjct: 291 WSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMR 350

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +G+IP I+HYGCMVD+L R+GR++EA+EFI  +PI   PI+WRTL+SAC + G ++L 
Sbjct: 351 DKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELG 410

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +++   +  H  +Y++LS++ A+  RWE    +R++M++RG+ KIPG + +E++N 
Sbjct: 411 KRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNV 470

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD  H  S ++++ LDE+ +++K  GYVP TS V   D+ +E+KE  L  HSEK
Sbjct: 471 VHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEK 530

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI F LL TPPGT IR+VKNLRVC DCHSA K IS I++R+I++RD  RFHHFKD
Sbjct: 531 LAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKD 586



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 12/312 (3%)

Query: 7   SPNKFTYPF-VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--YGSCEGGIE 63
           S +  T+P  +L  C  + +L   K +    +K     D+ V    ++          ++
Sbjct: 16  SNSNTTHPLSLLPKCTSLREL---KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQ 72

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
               +FD++ + D V ++ M  GYAR      A  LF Q+  SG+ PD+ T  ++L AC 
Sbjct: 73  HAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACA 132

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
              ALE G+ +     K  ++ +V +C  LI+M+  C ++D A ++F  +    +V++ +
Sbjct: 133 SCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNA 192

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KND 242
           +I G A   R  EA++LF E+    + P DV  + +LS+C+  G +D G+   + + KN 
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNG 252

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           F    K++    ++DM  + G + +A    + M +  +   W  +I A    G    A S
Sbjct: 253 FNRFVKVD--TALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHGHGLKAVS 309

Query: 303 ITK--RLIGNEP 312
           + K  R  G EP
Sbjct: 310 LFKEMRKAGTEP 321


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/470 (49%), Positives = 321/470 (68%), Gaps = 4/470 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  TYP +L+AC  +  L  G+S+H    K      + V+N+LVH YG+C G  E   +
Sbjct: 118 PDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGAC-GLFESAHR 176

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VFDE+   ER+ VSW++++ G+A  G   + + +FR+   + + PD  T+V+VL+AC ++
Sbjct: 177 VFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEI 236

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           GAL +G+ V  F  K  +  +  + NALID++AKCG V+ A K+F  M   RT+VSWTS+
Sbjct: 237 GALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSL 296

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA +G G +A+ LF  M    + P D+  VG+L ACSHCGLVD G  YF+ M++ +G
Sbjct: 297 IVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYG 356

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P IEH GCMVD+L R+GRV+EAH +I  MP+E N ++WRTL+ AC    +L+L E+  
Sbjct: 357 IAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAW 416

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            RL+  +P H  +YVLLS++YA + RW     +R+ M   G++K PG +L+EL N +YEF
Sbjct: 417 ARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEF 476

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GD+SH +S +IY+ L E+  +++  GYVP TS VL DI EE+KE ALN HSE+LAIAF
Sbjct: 477 VMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAF 536

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           ALLK+ PG+PIRIVKNLR+C DCH   K ISK+Y+REI+VRDR RFHHFK
Sbjct: 537 ALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFK 586



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           LE  + P+ FT   VL ACA IG L LG+ VH    K     + HV N L+ +Y  C GG
Sbjct: 215 LEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKC-GG 273

Query: 62  IELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           +E   KVF+EM   R  VSW+++I G A  G   DA++LF  M+   + P +ITMV VL 
Sbjct: 274 VEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLY 333

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC+  G ++ G ++     +K  +   +     ++D+  + G V++A     +M      
Sbjct: 334 ACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNA 393

Query: 179 VSWTSVIAGLAMH 191
           V W +++   AMH
Sbjct: 394 VVWRTLLGACAMH 406


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/475 (47%), Positives = 325/475 (68%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V PN+ T   VL ACA    L+LG S+   +       ++ + N L+ MY  C G
Sbjct: 252 MRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC-G 310

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R++FD+M ERD +SW+ MIGGY  +    +A+ LFR+M  SGV P EIT +++L 
Sbjct: 311 DLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILP 370

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGA+++GKW+ ++I K   + S  L  +LID++AKCG++  A ++F  M  +++ S
Sbjct: 371 SCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS 430

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GLAMHG+  +A  LF +M   G+ P+++ FVG+LSAC H GLVD G+++F SM 
Sbjct: 431 WNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMV 490

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I PK +HYGCM+D+L R+G  +EA   +Q M ++ +  IW +L+ AC   G ++L 
Sbjct: 491 QDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELG 550

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +RL   EP +   YVLLS+IYA   +W+   +IR  ++ RGMKK+PG T IE+DN 
Sbjct: 551 ELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNV 610

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GDK H QS++IY ML+E+  ++K  G+V  TSEVL D++EE KE AL+ HSEKL
Sbjct: 611 VHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKL 670

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T PGTPIRI+KNLRVC +CHSATK ISKI+NREI+ RDR+RFHHFKD
Sbjct: 671 AIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKD 725



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 187/376 (49%), Gaps = 73/376 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  GV PN +T+PF+LK+CA +   + GK +H  VLK  F  D+ +  +L++MY     
Sbjct: 120 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 179

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G ++  R++FDEM  +D VSW+AMI GYA++
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G S +A+ LF  M+ + V P+E T+V+VLSAC    AL++G  + S+IE + +  ++ L 
Sbjct: 240 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 299

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM++KCGD+  A +LF  M  R ++SW  +I G        EA+ALF EML +GV 
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359

Query: 211 PDDVAFVGLLSACSHCGLVDKG-----------------------------------REY 235
           P ++ F+ +L +C+H G +D G                                   R+ 
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACC 292
           FD MK     I  +  +  M+  L   G+  +A E   KM    IE N I +  ++SAC 
Sbjct: 420 FDGMK-----IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 474

Query: 293 ARGELKLAESITKRLI 308
             G + L +     ++
Sbjct: 475 HAGLVDLGQQFFSSMV 490



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 36/317 (11%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H  ++K    + +   + L+     S  G I     +F+ + E +   W++MI G +
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
                  A+  F +M  SGV P+  T   +L +C  L +   GK + + + K      V 
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH----------------- 191
           +  +LI+M+A+ G+++ A  +F   N R  +S+T++IAG A+                  
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 192 --------------GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
                         GR  EA+ LFE+M +A VPP++   V +LSAC+    +D G     
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS-MR 284

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           S   D G+   ++    ++DM  + G ++ A E    M +E + I W  +I         
Sbjct: 285 SWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNVMIGGYTHMCSY 343

Query: 298 KLAESITKRLI--GNEP 312
           K A ++ + ++  G EP
Sbjct: 344 KEALALFREMLASGVEP 360



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA--KCGDVDKALKLFRSM 173
           + +LS C    ++   K + + I K  ++ ++   + LI+  A  + GD+  A+ LF S+
Sbjct: 33  LKLLSKCQ---SIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
               +  W S+I GL+M      A+  F  M+ +GV P+   F  LL +C+      +G+
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGK 149

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
           +    +    G +  +  +  +++M  +SG +  A 
Sbjct: 150 QIHAHVLK-LGFVSDVFIHTSLINMYAQSGEMNNAQ 184


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/473 (46%), Positives = 324/473 (68%), Gaps = 1/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  T+P VLK+ A +    LGK++H  +++  F  +++V   LV+MYG+C  
Sbjct: 133 MWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTC-S 191

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFDE+ +R+ VSW+A+I GY    +    ID+FR+MQI+G  P E+TMV VL 
Sbjct: 192 SVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLL 251

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL  G+W++ +I+   +  +V +  ALIDM+AKCG VD+A K+F++M  + + +
Sbjct: 252 ACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYT 311

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G AM+GRG  A+  F  M+     PD+V F+G+L AC H GLV++GR YF SMK
Sbjct: 312 WNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMK 371

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +FG+ P+IEHYGCMVD+L R+G + EA + IQ M ++ +PIIWR L+ AC   G ++L 
Sbjct: 372 EEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLG 431

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L+  EP +  NYVLL+++YA+  RW+K  ++RE+MD R ++K+PG + IE+DN 
Sbjct: 432 EFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNV 491

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +YEFV  +      +E+Y++L +M +K+K AGYV  T     DI EE+KE +L  HSEKL
Sbjct: 492 VYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKL 551

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AF LLK+P G  +RIVKNLR+C DCH   K +SK+Y R+I VRDR+RFHHF
Sbjct: 552 ALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHF 604



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           DS   ++MI  Y        ++ ++ QM  +G+ PD  T  TVL +   L   E+GK + 
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             I +     +V +  AL++M+  C  V  A ++F  +  R IVSW ++I G   +    
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHY 252
           + + +F EM  AG  P +V  VG+L AC+H G +++GR   +Y D  +    +       
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGT--- 282

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
             ++DM  + G V EA +  + M ++ N   W  LIS     G  + A     R+I
Sbjct: 283 -ALIDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMI 336


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/465 (47%), Positives = 325/465 (69%), Gaps = 2/465 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  TYPF++KA   + D+ LG+++H  V++  FG  I+VQN+L+H+Y +C G +   
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVFD+M E+D V+W+++I G+A  G   +A+ L+ +M   G+ PD  T+V++LSAC  +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL +GK V  ++ K  + R++   N L+D++A+CG V++A  LF  M  +  VSWTS+I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 186 AGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            GLA++G G EA+ LF+ M    G+ P ++ FVG+L ACSHCG+V +G EYF  M+ ++ 
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+ AC   G+  LAE   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +++  EP H  +YVLLS++YA   RW    KIR+ M + G+KK+PG +L+E+ N ++EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH QS  IY  L EM  +++  GYVP  S V +D+ EE+KE+A+  HSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHR 469
            L+ TP  +PI +VKNLRVC DCH A K +SK+YNREIVVRDR R
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 4/267 (1%)

Query: 62  IELGRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
           +    KVF ++ +  +V  W+ +I GYA +G S  A  L+R+M++SG V PD  T   ++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A T +  + +G+ + S + +      + + N+L+ ++A CGDV  A K+F  M  + +V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W SVI G A +G+  EA+AL+ EM   G+ PD    V LLSAC+  G +  G+     M
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     ++D+  R GRV+EA     +M ++ N + W +LI      G  K 
Sbjct: 249 IK-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKE 306

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYA 326
           A  + K +   E +       +  +YA
Sbjct: 307 AIELFKYMESTEGLLPCEITFVGILYA 333



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 4/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ FT   +L ACA IG L LGK VH  ++K     ++H  N L+ +Y  C G
Sbjct: 213 MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-G 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVL 119
            +E  + +FDEM +++SVSW+++I G A  G   +AI+LF+ M+ + G+ P EIT V +L
Sbjct: 272 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 331

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
            AC+  G ++ G ++     E+  +   +     ++D+ A+ G V KA +  +SM  +  
Sbjct: 332 YACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPN 391

Query: 178 IVSWTSVIAGLAMHG 192
           +V W +++    +HG
Sbjct: 392 VVIWRTLLGACTVHG 406


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/467 (48%), Positives = 323/467 (69%), Gaps = 2/467 (0%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +PN FT  FVLKAC+ +  L  G+ VH  VLK  FG    V+  LV+ Y  CE  I L  
Sbjct: 158 NPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCED-IVLAS 216

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFDE+++R+ V+WS MI GYAR+GL  +A+ LFR MQ +GV PDE+TMV+V+SAC   G
Sbjct: 217 KVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASG 276

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL+ GKWV ++I KQ++   + L  AL++M+AKCG +++A ++F +M  +   +W+S+I 
Sbjct: 277 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 336

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLA++G   +A+  F  M EA V P+ V F+G+LSAC+H GLV +GR Y+ SM  +FGI+
Sbjct: 337 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIV 395

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E YGCMVD+LCR+  V++A   ++ MPI  NP+IWRTL+  C     L  +E + +R
Sbjct: 396 PSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQR 455

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NY+LLS++YA + +WEK +++R+ M   G+K +PG + IE+D  ++EFV 
Sbjct: 456 LLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVM 515

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH ++ E+ E+L ++ +++   G+ P  S+VL ++ +E+KE+AL +HSE+LAIA+ L
Sbjct: 516 GDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGL 575

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LKT     IRIVKNLRVC DCH  TK IS  Y REI+VRDR RFH F
Sbjct: 576 LKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKF 622



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGL-STDAIDLFRQMQISGVC-PDEITMVT 117
           G I+  RK+F ++   +  SW++MI G ++    S + + LFR+M   G   P+  TM  
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL AC+ + ALE G+ V + + K     S  +  AL++ +AKC D+  A K+F  +  R 
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+W+++I+G A  G   EA+ LF +M +AGV PD+V  V ++SAC+  G +D G+ +  
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGK-WVH 285

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  N   I   +E    +V+M  + G ++ A E    MP++ +   W ++I
Sbjct: 286 AYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMI 335



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 2/188 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P++ T   V+ ACA  G L+ GK VH  + K     D+ +   LV+MY  C G
Sbjct: 253 MQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC-G 311

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  ++VFD M  +D+ +WS+MI G A  GL+ DA++ F +M+ + V P+ +T + VLS
Sbjct: 312 CIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLS 371

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC   G +  G+   S + +  +  S+ L   ++D+  +   V+ A  L  +M      V
Sbjct: 372 ACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPV 431

Query: 180 SWTSVIAG 187
            W +++ G
Sbjct: 432 IWRTLLVG 439



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 41/241 (17%)

Query: 146 SVGLCNAL-IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM-HGRGLEAVALFEE 203
           S GLC  +     +  GD+D A KLF  +    I SW S+I G +       E V LF +
Sbjct: 91  SFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRK 150

Query: 204 MLEAGVP-PDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIE----------- 250
           M+  G P P+      +L ACS    +++G++ + + +K+ FG  P +E           
Sbjct: 151 MVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCE 210

Query: 251 ------------------HYGCMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLIS 289
                              +  M+    R G V EA      +QK  +  + +   ++IS
Sbjct: 211 DIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVIS 270

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVL---LSHIYAKLLRWEKKTKIREVMDKRGM 346
           AC A G L   + +   +  N+ + E++  L   L ++YAK    E+  ++ + M  +  
Sbjct: 271 ACAASGALDTGKWVHAYI--NKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 328

Query: 347 K 347
           K
Sbjct: 329 K 329


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/506 (44%), Positives = 336/506 (66%), Gaps = 32/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  + V P+ FT  FVLKAC  + D+  GK++HG   K  FG ++ +QN ++++YG C G
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC-G 59

Query: 61  GIELGRKVFDEMSERDSV-------------------------------SWSAMIGGYAR 89
            +     +F++M +RD+V                               SW++MI G+ +
Sbjct: 60  EMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQ 119

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +AIDLF +++   V P+E+T+V+VL+AC DLG L++G+ V  +  K    R+V +
Sbjct: 120 CGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHV 179

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           CN LIDM+ KCG ++ A ++F  M  RT+VSW+++IAGLAMHG+  EA+ LF EM++ GV
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV 239

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F+GLL ACSH GL+D+GR +F SM  D+G+IP+IEHYGC+VD+  R+G ++EAH
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAH 299

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFI  MPI+ N ++W  L+  C     + LAE   K L   +P+++  YV++S+IYA+  
Sbjct: 300 EFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAE 359

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RWE   ++R++M  RG+KK  G + I ++  ++EFV GD++H Q+++I ++ D++  KMK
Sbjct: 360 RWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMK 419

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           + GY P TS VLLD+ E++KE  L +HSEKLA+ F L+ TP GTPIRI+KNLRVC DCH+
Sbjct: 420 RRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHA 479

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K IS I +REI+VRDR+RFH F+D
Sbjct: 480 ALKIISGIVSREIIVRDRNRFHCFRD 505


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/477 (48%), Positives = 327/477 (68%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ TY  VL ACA  G + LG+ VH  V    F  ++ + N L+ +Y  C G
Sbjct: 187 MMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKC-G 245

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  +S +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM++VL 
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLP 305

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F SM  +++
Sbjct: 306 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 365

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   +  LF  M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 366 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 425

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ + PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 426 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 485

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAES  + LI  EP + S+Y+LLS+IYA   RWE   +IR +++ + MKK+PG + IE+D
Sbjct: 486 LAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EFV GDK H Q++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 546 SVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 605

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK +SKIY REIV RDR RFHHF+D
Sbjct: 606 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRD 662



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 181/347 (52%), Gaps = 38/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK  F  D++V  +L+ MY     
Sbjct: 55  MVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWR 114

Query: 56  -------------------------GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G I   +K+FDE+  +D VSW+AMI GYA  
Sbjct: 115 LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF +M    V PDE T VTVLSAC   G++E+G+ V S+++    + ++ + 
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV 234

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+V+ A  LF+ ++ + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 235 NALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 294

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 295 PNDVTMLSVLPACAHLGAIDIGRWIHVYID--KRLKGVTNASSLRTSLIDMYAKCGDIEA 352

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
           AH+    M +  +   W  +I      G    +  +  R+  IG EP
Sbjct: 353 AHQVFNSM-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEP 398



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ MI G+A       ++ L+  M   G+ P+  T   +L 
Sbjct: 13  GLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72

Query: 121 ACTDLGALEVGKWVE----------------SFIEKQMVN---------------RSVGL 149
           +C        G+ +                 S I   + N               R V  
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI  +A  GD+  A KLF  +  + +VSW ++I+G A  G   EA+ LFEEM++  V
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+  +V +LSAC+H G ++ GR+   S  +D G    ++    ++D+  + G V+ A 
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 270 EFIQKMPIEANPIIWRTLI 288
              Q +  + + I W TLI
Sbjct: 252 GLFQGLSYK-DVISWNTLI 269


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/467 (48%), Positives = 323/467 (69%), Gaps = 2/467 (0%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +PN FT  FVLKAC+ +  L  G+ VH  VLK  FG    V+  LV+ Y  CE  I L  
Sbjct: 89  NPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCED-IVLAS 147

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFDE+++R+ V+WS MI GYAR+GL  +A+ LFR MQ +GV PDE+TMV+V+SAC   G
Sbjct: 148 KVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASG 207

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL+ GKWV ++I KQ++   + L  AL++M+AKCG +++A ++F +M  +   +W+S+I 
Sbjct: 208 ALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIV 267

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLA++G   +A+  F  M EA V P+ V F+G+LSAC+H GLV +GR Y+ SM  +FGI+
Sbjct: 268 GLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIV 326

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E YGCMVD+LCR+  V++A   ++ MPI  NP+IWRTL+  C     L  +E + +R
Sbjct: 327 PSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQR 386

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NY+LLS++YA + +WEK +++R+ M   G+K +PG + IE+D  ++EFV 
Sbjct: 387 LLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVM 446

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH ++ E+ E+L ++ +++   G+ P  S+VL ++ +E+KE+AL +HSE+LAIA+ L
Sbjct: 447 GDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGL 506

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LKT     IRIVKNLRVC DCH  TK IS  Y REI+VRDR RFH F
Sbjct: 507 LKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKF 553



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGL-STDAIDLFRQMQISGVC-PDEITMVT 117
           G I+  RK+F ++   +  SW++MI G ++    S + + LFR+M   G   P+  TM  
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL AC+ + ALE G+ V + + K     S  +  AL++ +AKC D+  A K+F  +  R 
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+W+++I+G A  G   EA+ LF +M +AGV PD+V  V ++SAC+  G +D G+ +  
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGK-WVH 216

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  N   I   +E    +V+M  + G ++ A E    MP++ +   W ++I
Sbjct: 217 AYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMI 266



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 2/188 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P++ T   V+ ACA  G L+ GK VH  + K     D+ +   LV+MY  C G
Sbjct: 184 MQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC-G 242

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  ++VFD M  +D+ +WS+MI G A  GL+ DA++ F +M+ + V P+ +T + VLS
Sbjct: 243 CIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLS 302

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC   G +  G+   S + +  +  S+ L   ++D+  +   V+ A  L  +M      V
Sbjct: 303 ACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPV 362

Query: 180 SWTSVIAG 187
            W +++ G
Sbjct: 363 IWRTLLVG 370



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 41/241 (17%)

Query: 146 SVGLCNAL-IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM-HGRGLEAVALFEE 203
           S GLC  +     +  GD+D A KLF  +    I SW S+I G +       E V LF +
Sbjct: 22  SFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRK 81

Query: 204 MLEAGVP-PDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIE----------- 250
           M+  G P P+      +L ACS    +++G++ + + +K+ FG  P +E           
Sbjct: 82  MVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCE 141

Query: 251 ------------------HYGCMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLIS 289
                              +  M+    R G V EA      +QK  +  + +   ++IS
Sbjct: 142 DIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVIS 201

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVL---LSHIYAKLLRWEKKTKIREVMDKRGM 346
           AC A G L   + +   +  N+ + E++  L   L ++YAK    E+  ++ + M  +  
Sbjct: 202 ACAASGALDTGKWVHAYI--NKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 259

Query: 347 K 347
           K
Sbjct: 260 K 260


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/473 (47%), Positives = 319/473 (67%), Gaps = 4/473 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           V+PN  T   VL ACA  G  L LG  V   +     G +I + N L+ MY  C G +E 
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC-GDLEE 314

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+++ +++ VSW+ MIGGY  +    +A+ LFR+M  S + P+++T +++L AC +
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 125 LGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           LGAL++GKWV ++++K M  +  +V L  +LIDM+AKCGD+  A ++F  MN +++ +W 
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+G AMHG    A+ LF  M   G  PDD+ FVG+L+AC H GL+  GR YF SM  D
Sbjct: 435 AMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQD 494

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + + PK+ HYGCM+D+  R+G   EA   ++ M ++ +  IW +L+ AC     ++LAES
Sbjct: 495 YKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAES 554

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + K L   EP + S YVLLS+IYA   RWE   KIR  ++   MKK+PG + IE+D+ ++
Sbjct: 555 VAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVH 614

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
           EF+ GDK H QS EIY+MLDE+  +++KAG+VP TSEVL D++EE KE  L+ HSEKLAI
Sbjct: 615 EFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAI 674

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF L+ T PGT IRI+KNLRVC +CHSATK ISKI+NREI+ RDR+RFHHFKD
Sbjct: 675 AFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKD 727



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 174/345 (50%), Gaps = 45/345 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G  PN++T+P + K+C  I   + GK VH  VLK     +  V  +L++MY     
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     + +G ++  R++FDE+  RD VSW+AMI GYA+ 
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGL 149
           G   +A+  F +M+ + V P+  TM++VLSAC   G +L++G WV S+IE + +  ++ L
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            N LIDM+ KCGD+++A  LF  +  + +VSW  +I G        EA+ LF  M+++ +
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358

Query: 210 PPDDVAFVGLLSACSHCGLVDKGR---EYFD----SMKNDFGIIPKIEHYGCMVDMLCRS 262
            P+DV F+ +L AC++ G +D G+    Y D    SMKN   +      +  ++DM  + 
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVAL------WTSLIDMYAKC 412

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           G +  A      M  ++    W  +IS     G    A  +  R+
Sbjct: 413 GDLAVAKRIFDCMNTKS-LATWNAMISGFAMHGHTDTALGLFSRM 456



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--QFGDDIHVQNTLVHMYGSC 58
           M++  + PN  T+  +L ACA +G L+LGK VH  V K      + + +  +L+ MY  C
Sbjct: 353 MMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKC 412

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G + + +++FD M+ +   +W+AMI G+A  G +  A+ LF +M   G  PD+IT V V
Sbjct: 413 -GDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGV 471

Query: 119 LSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           L+AC   G L +G ++  S I+   V+  +     +ID+F + G  D+A  L ++M  + 
Sbjct: 472 LTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKP 531

Query: 178 IVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
             + W S++    +H R   A ++ + + E  + P++ +   LLS
Sbjct: 532 DGAIWCSLLGACRIHRRIELAESVAKHLFE--LEPENPSAYVLLS 574



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 134/311 (43%), Gaps = 33/311 (10%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H  ++K    +     + L+     S  G +     +F  +   + V W+ MI G +
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
                  A++ +  M  SG  P+E T  ++  +CT +     GK V + + K  +  +  
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAF 164

Query: 149 LCNALIDMFAKCGDV-------------------------------DKALKLFRSMNGRT 177
           +  +LI+M+A+ G++                               D+A +LF  +  R 
Sbjct: 165 VHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRD 224

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSW ++I+G A  GR  EA+A FEEM  A V P+    + +LSAC+  G   +   +  
Sbjct: 225 VVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVR 284

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           S   D G+   I     ++DM  + G ++EA    +K+  + N + W  +I         
Sbjct: 285 SWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNVMIGGYTHMSCY 343

Query: 298 KLAESITKRLI 308
           K A  + +R++
Sbjct: 344 KEALGLFRRMM 354


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/503 (44%), Positives = 328/503 (65%), Gaps = 30/503 (5%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC---- 58
           +Y V P+ FT   VL+AC  + DL+ G+ +HG V K  F  ++++QN +VH+Y SC    
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 59  --------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                     +G  E    +F  M ER+  SW++MI GY + G 
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           + +AI LF +M+ +GV  +E+T+V VL+AC DLGAL++G  +  +  +    R+V + N 
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT 300

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LIDM+ KCG +++A K+F  M  RT+VSW+++I GLAMHGR  EA+ LF +M + G+ P+
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V F+GLL ACSH GL+ +GR +F SM  D+GIIP+IEHYGCMVD+L R+G + EAHEFI
Sbjct: 361 GVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFI 420

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP++ N ++W  L+ AC     +++AE   K L+  +P+++  YV+LS+IYA+  RWE
Sbjct: 421 LNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWE 480

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              ++R+ M  R +KK PG + I +D  ++EFV G++SH  +++I++  +E+  +M+  G
Sbjct: 481 DTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKG 540

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS VLLDI E +K   +++HSEKLA+ F L+ TP  TPIRI+KNLR+C DCHSA K
Sbjct: 541 YVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFK 600

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
            IS I NREIVVRDR+RFH F D
Sbjct: 601 LISAIVNREIVVRDRNRFHCFND 623



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N+ T   VL ACA +G L+LG  +H    +  F  ++ + NTL+ MY  C G
Sbjct: 251 MEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC-G 309

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVF+EM ER  VSWSAMIGG A  G + +A+ LF  M   G+ P+ +T + +L 
Sbjct: 310 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 369

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+ +G +  G ++  S      +   +     ++D+ ++ G + +A +   +M    NG
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
              V W +++    +H     A    + +LE   P +D  +V L +  +  G
Sbjct: 430 ---VVWGALLGACRVHKNVEMAEEAIKHLLELD-PLNDGYYVVLSNIYAEAG 477



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 42/320 (13%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD--EMSERDSVSWSAMIGGY 87
           + VH  ++K      I +  T V +  +        +++F   E  + ++  W++ +   
Sbjct: 45  RQVHAQIIKTNAPLSI-LPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKAL 103

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           A      DAI LF +++   VCPD  T  +VL AC +L  L  G+ +   +EK     ++
Sbjct: 104 AEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNL 163

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIV---------------------------- 179
            L N ++ ++A CG++ +A  LF  M  R +V                            
Sbjct: 164 YLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPER 223

Query: 180 ---SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
              SWTS+IAG    G+  EA+ LF +M EAGV  ++V  V +L+AC+  G +D G    
Sbjct: 224 NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   N  G    +     ++DM  + G ++EA +  ++M  E   + W  +I      G 
Sbjct: 284 E-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGR 341

Query: 297 ----LKLAESITKRLIGNEP 312
               L+L   +++  +G EP
Sbjct: 342 AEEALRLFSDMSQ--VGIEP 359


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/501 (45%), Positives = 327/501 (65%), Gaps = 30/501 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SC 58
            +SP+ +T+ F+++ CA +     G  VHGAV+K  F  D HVQ  LV MY       SC
Sbjct: 107 NLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSC 166

Query: 59  E------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                    G I+  RK+FDEM ERD V+W+AMI GYA+ G S 
Sbjct: 167 HNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSR 226

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+D+F  MQ+ GV  +E++MV VLSACT L  L+ G+WV +++E+  V  +V L  AL+
Sbjct: 227 EALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALV 286

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+AKCG+VD+A+++F  M  R + +W+S I GLAM+G G E++ LF +M   GV P+ +
Sbjct: 287 DMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGI 346

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F+ +L  CS  GLV++GR++FDSM+N +GI P++EHYG MVDM  R+GR+KEA  FI  
Sbjct: 347 TFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINS 406

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP+  +   W  L+ AC      +L E   ++++  E  ++  YVLLS+IYA    WE  
Sbjct: 407 MPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESV 466

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
           + +R+ M  +G+KK+PG ++IE+D E++EF+ GDKSH +  EI   L+E+ + ++ +GYV
Sbjct: 467 SSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYV 526

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
             T+ VL DI EE+KEDAL+KHSEK+AIAF L+      PIR+V NLR+C DCH+  K I
Sbjct: 527 ANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMI 586

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SKI+NREI+VRDR+RFHHFKD
Sbjct: 587 SKIFNREIIVRDRNRFHHFKD 607


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/477 (46%), Positives = 325/477 (68%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  + P++ T   V+ ACA  G + LG+ VH  +    FG ++ + N+L+ +Y  C G
Sbjct: 257 MMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKC-G 315

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +  +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 316 ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++     +  L  +LIDM+AKCGD++ A ++F S+  +++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   A  +F  M + G+ PDD+ FVGLLSACS  G++D GR  F +
Sbjct: 436 SSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRT 495

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ I PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC  RG ++
Sbjct: 496 MTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVE 555

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +   YVLLS+IYA   RW +  KIR +++ +GMKK+PG + IE+D
Sbjct: 556 LGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 615

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   ++KAG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSE 675

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 676 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK  +  D+ V  +L+ +Y   G 
Sbjct: 125 MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGR 184

Query: 58  CE---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
            E                           G IE  +K+FDE+  +D VSW+AMI GYA  
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF++M  + + PDE TMVTV+SAC   G++E+G+ V S+I+      ++ + 
Sbjct: 245 GNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 304

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N+L+D+++KCG+++ A  LF  +  + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 305 NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER 364

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D           +     ++DM  + G ++ 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLR--TSLIDMYAKCGDIEA 422

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
           AH+    + +  +   W  +I      G    A  I  R+  IG EP
Sbjct: 423 AHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEP 468



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 83  GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLK 142

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    A + G+ +   + K   +  + +  +LI ++ + G ++ A K+F     R +VS
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVS 202

Query: 181 WTSV-------------------------------IAGLAMHGRGLEAVALFEEMLEAGV 209
           +T++                               I+G A  G   EA+ LF+EM++  +
Sbjct: 203 YTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNI 262

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+  G ++ GR+   S  +D G    ++    ++D+  + G ++ A 
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + + +  + I W TLI
Sbjct: 322 GLFEGL-LYKDVISWNTLI 339


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/475 (46%), Positives = 315/475 (66%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M + G+ PN+ TY  +L AC+    L+ G+ +H  V++     D HV NTLV+MY  C G
Sbjct: 538  MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMC-G 596

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             ++  R+VFD M++RD V+++AMIGGYA   L  +A+ LF ++Q  G+ PD++T + +L+
Sbjct: 597  SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 656

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC + G+LE  K + S + K        L NAL+  +AKCG    AL +F  M  R ++S
Sbjct: 657  ACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVIS 716

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I G A HGRG + + LFE M   G+ PD V FV LLSACSH GL+++GR YF SM 
Sbjct: 717  WNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 776

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             DFGI P IEHYGCMVD+L R+G++ E    I+ MP +AN  IW  L+ AC   G + +A
Sbjct: 777  RDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E   +  +  +P + + YV LSH+YA    W+   K+R++M++RG+ K PG + IE+ ++
Sbjct: 837  ERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDK 896

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ FV  D+SH +S++IY  LD++   MK  GYVP T  V+ D++E +KE+A+  HSE+L
Sbjct: 897  LHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERL 956

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIA+ L+ T PGTPIRI KNLRVC DCH+ATKFI+KI +REIV RD +RFHHFKD
Sbjct: 957  AIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKD 1011



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 163/295 (55%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PNK TY  +L AC     L+ G+ +H  V+K  F  DI VQN L+ MY  C G
Sbjct: 437 MQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARC-G 495

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R +F++M  +D +SW+AMIGG A+ GL  +A+ +F+ MQ +G+ P+ +T  ++L+
Sbjct: 496 SIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILN 555

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   AL+ G+ +   + +  +     + N L++M++ CG V  A ++F  M  R IV+
Sbjct: 556 ACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVA 615

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++I G A H  G EA+ LF+ + E G+ PD V ++ +L+AC++ G ++  +E    + 
Sbjct: 616 YNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVL 675

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            D G +        +V    + G   +A     KM ++ N I W  +I  C   G
Sbjct: 676 KD-GYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHG 728



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 167/307 (54%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV PN+ TY  VL A +G   L  GK+VH  +L      D+ V   LV MY  C G
Sbjct: 336 MQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKC-G 394

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R+VF+++  RD ++W+ MIGG A  G   +A +++ QMQ  G+ P++IT V +L+
Sbjct: 395 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +  AL  G+ + S + K      + + NALI M+A+CG +  A  LF  M  + I+S
Sbjct: 455 ACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS 514

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I GLA  G G EA+A+F++M +AG+ P+ V +  +L+ACS    +D GR     + 
Sbjct: 515 WTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI 574

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G+         +V+M    G VK+A +   +M  + + + +  +I    A    K A
Sbjct: 575 -EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGKEA 632

Query: 301 ESITKRL 307
             +  RL
Sbjct: 633 LKLFDRL 639



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 154/295 (52%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++G++  + T   +L +C     L  G+ +H   +K +   D++V N +++MY  C G
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKC-G 293

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R+VFD+M  +  VSW+ +IGGYA  G S  A ++F++MQ  GV P+ IT + VL+
Sbjct: 294 SIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLN 353

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A +   AL+ GK V S I        + +  AL+ M+AKCG      ++F  +  R +++
Sbjct: 354 AFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 413

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GLA  G   EA  ++ +M   G+ P+ + +V LL+AC +   +  GRE    + 
Sbjct: 414 WNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVV 473

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            D G +  I     ++ M  R G +K+A     KM +  + I W  +I      G
Sbjct: 474 KD-GFMFDISVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSG 526



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 173/347 (49%), Gaps = 8/347 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           + + G   N   Y  +LK C  + DL  G+ VH  +++     D +  N L++MY  C G
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQC-G 190

Query: 61  GIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            IE  R+V++++  +ER   SW+AM+ GY + G   +A+ L R+MQ  G+     T + +
Sbjct: 191 SIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRL 250

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LS+C    ALE G+ +     K  +   V + N +++M+AKCG + +A ++F  M  +++
Sbjct: 251 LSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSV 310

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWT +I G A  G    A  +F++M + GV P+ + ++ +L+A S    +  G+     
Sbjct: 311 VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSH 370

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + N  G    +     +V M  + G  K+  +  +K+ +  + I W T+I      G  +
Sbjct: 371 ILNA-GHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWE 428

Query: 299 LAESITKRLIGNEPM-HESNYVLLSH--IYAKLLRWEKKTKIREVMD 342
            A  I  ++     M ++  YV+L +  +    L W ++   R V D
Sbjct: 429 EASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD 475



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+D+ + +Q  G   +    + +L  C ++  L  G+ V   I +          NALI+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 156 MFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           M+ +CG +++A +++  +N   RT+ SW +++ G   +G   EA+ L  EM + G+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
              + LLS+C     ++ GRE + ++MK    ++  +    C+++M  + G + EA E  
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKAR--LLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            KM  ++  + W  +I      G  ++A  I +++
Sbjct: 303 DKMETKS-VVSWTIIIGGYADCGHSEIAFEIFQKM 336


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 329/475 (69%), Gaps = 2/475 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L Y + P+ +T+P +LKAC        GK +H   +K    ++ +V  TL++MY  C   
Sbjct: 119 LNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGC-ND 177

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  ++VFDE+ E   VS++A+I GYAR     +A+ LFRQ+Q   + P+++T+++VLS+
Sbjct: 178 VDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSS 237

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  LGAL++GKW+  +++K  +++ V +  ALIDM+AKCG +D A+ +F SM+ R   +W
Sbjct: 238 CALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAW 297

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I   AMHG+G + +++FEEM  A V PD++ F+GLL ACSH GLVD+G  YF SM  
Sbjct: 298 SAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSE 357

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            +GIIP I+HYGCMVD+L R+G + EA++FI ++PI+  PI+WRTL+S+C + G L+LA+
Sbjct: 358 VYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAK 417

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            +  +++  +  H  +YV+LS++ A+  +WE    +R++M  +G  KIPG + IE+DN +
Sbjct: 418 QVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVV 477

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEKL 420
           +EF  GD  H+ S  ++  LDE+ +++K  GYVP TS V+  D+ +E+KE  L  HSEKL
Sbjct: 478 HEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKL 537

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL TPPGT IR+VKNLRVC DCHSA K IS + +REI++RD  RFHHFKD
Sbjct: 538 AISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKD 592



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 5/288 (1%)

Query: 12  TYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVH--MYGSCEGGIELGRKV 68
           TYP  L +C      L   K +    +K    +D+ +   L++          ++   ++
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+ + + D V +++M  GY+R      AI LF +     + PD+ T  ++L AC    A 
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAF 143

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           + GK +     K  +N +  +C  LI+M+A C DVD A ++F  +    +VS+ ++I G 
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGY 203

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A   R  EA++LF ++    + P+DV  + +LS+C+  G +D G+   + +K + G+   
Sbjct: 204 ARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN-GLDKY 262

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           ++    ++DM  + G +  A    + M +  +   W  +I A    G+
Sbjct: 263 VKVNTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAMHGQ 309


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/501 (44%), Positives = 329/501 (65%), Gaps = 30/501 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE-- 59
           G+ P+  T+PF++K+C  +  +++G   HG ++K  F  D++VQN+LVHMY   G  E  
Sbjct: 114 GLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173

Query: 60  -------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                    G +E  RK+FD+M E++ V+WS MI GYA+     
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
            A++LF+ +Q  GV  +E  MV+V+S+C  LGALE+G+    ++ K  +  ++ L  AL+
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALV 293

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+A+CG +DKA+ +F  +  R  +SWT++IAGLAMHG    ++  F  M+EAG+ P D+
Sbjct: 294 DMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDI 353

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F  +LSACSH GLV++G + F+SMK D  + P++EHYGCMVD+L R+G+++EA  F+ K
Sbjct: 354 TFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLK 413

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP++ N  +W  L+ AC      ++ E + K LI   P H   YVLLS+IYA    WEK 
Sbjct: 414 MPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKV 473

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
           T++R++M  +G+KK PG +LIELD  +++F  GD SH +  +I  M +E+  +++ AGY 
Sbjct: 474 TEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYR 533

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
             T++ L DI+EE+KE AL++HSEKLAIAF ++++  GTPIRIVKNLRVC DCH+ATK I
Sbjct: 534 GNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLI 593

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK++ RE++VRDR+RFHHF+ 
Sbjct: 594 SKVFGRELIVRDRNRFHHFRQ 614



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 39/315 (12%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDE 71
           F L+ C+   DL   K +H  +++     D+   + L+        G   I+   ++F +
Sbjct: 22  FSLETCS---DLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQ 78

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +   +   ++AMI G++       A   + Q Q  G+ PD +T   ++ +CT L  + +G
Sbjct: 79  IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMG 138

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS-------- 183
                 I K    + V + N+L+ M+A  GD + A  +F+ M    +VSWTS        
Sbjct: 139 SQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKC 198

Query: 184 -----------------------VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
                                  +I+G A +    +AV LF+ +   GV  ++   V ++
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVI 258

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           S+C+H G ++ G    D +  + G+   +     +VDM  R G + +A    + +P E +
Sbjct: 259 SSCAHLGALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-ERD 316

Query: 281 PIIWRTLISACCARG 295
            + W  LI+     G
Sbjct: 317 TLSWTALIAGLAMHG 331


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/454 (48%), Positives = 320/454 (70%), Gaps = 2/454 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           + D+ LG+++H  V++  FG  I+VQN+L+H+Y +C G +    KVFD+M E+D V+W++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASAYKVFDKMPEKDLVAWNS 59

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           +I G+A  G   +A+ L+ +M   G+ PD  T+V++LSAC  +GAL +GK V  ++ K  
Sbjct: 60  VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 119

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           + R++   N L+D++A+CG V++A  LF  M  +  VSWTS+I GLA++G G EA+ LF+
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 179

Query: 203 EMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            M    G+ P ++ FVG+L ACSHCG+V +G EYF  M+ ++ I P+IEH+GCMVD+L R
Sbjct: 180 YMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 239

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           +G+VK+A+E+I+ MP++ N +IWRTL+ AC   G+  LAE    +++  EP H  +YVLL
Sbjct: 240 AGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLL 299

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S++YA   RW    KIR+ M + G+KK+PG +L+E+ N ++EF+ GDKSH QS  IY  L
Sbjct: 300 SNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL 359

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
            EM  +++  GYVP  S V +D+ EE+KE+A+  HSEK+AIAF L+ TP  +PI +VKNL
Sbjct: 360 KEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNL 419

Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           RVC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 420 RVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 453



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L ACA IG L LGK VH  ++K     ++H  N L+ +Y  C G +E 
Sbjct: 84  GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-GRVEE 142

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACT 123
            + +FDEM +++SVSW+++I G A  G   +AI+LF+ M+ + G+ P EIT V +L AC+
Sbjct: 143 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSW 181
             G ++ G ++     E+  +   +     ++D+ A+ G V KA +  +SM  +  +V W
Sbjct: 203 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 262

Query: 182 TSVIAGLAMHG 192
            +++    +HG
Sbjct: 263 RTLLGACTVHG 273


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/477 (47%), Positives = 328/477 (68%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   VL ACA    + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 189 MMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC-G 247

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +S +D VSW+ +IGGY  + L  +A+ LF++M  SG  P+++T+V++L 
Sbjct: 248 QVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILP 307

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F SM  +++
Sbjct: 308 ACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 367

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR      LF  M + G+ PDD+ FVGLLSACSH G +D GR  F S
Sbjct: 368 SSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKS 427

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ I PK+EHYGCM+D+L  SG  KEA E I+ MP+E + +IW +L+ AC   G L+
Sbjct: 428 MTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLE 487

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAES  + L+  EP +  +YVLLS+IYA    W++  K+R +++ +GMKK+PG + IE+D
Sbjct: 488 LAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEID 547

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           +E++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 548 SEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 607

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK +SKIY REI+ RDR RFHHF+D
Sbjct: 608 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRD 664



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 183/374 (48%), Gaps = 69/374 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK  +  D++V  +L+ MY     
Sbjct: 57  MISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGR 116

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G I   +++FDE+  +D VSW+AMI GYA  
Sbjct: 117 LEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAET 176

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF++M  + V PDE TMVTVLSAC    ++E+G+ V S+I+      ++ + 
Sbjct: 177 GSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIV 236

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG V+ A  LF  ++ + +VSW ++I G        EA+ LF+EML +G  
Sbjct: 237 NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  V +L AC+H G +D GR    Y D    D    P +     ++DM  + G ++ 
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEA 354

Query: 268 AHEFIQKM----------------------------------PIEANPIIWRTLISACCA 293
           AH+    M                                   IE + I +  L+SAC  
Sbjct: 355 AHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSH 414

Query: 294 RGELKLAESITKRL 307
            G+L L   I K +
Sbjct: 415 SGKLDLGRHIFKSM 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G      VF  + E + + W+ M+ GYA       A+ L+  M   G+ P+  T   +L 
Sbjct: 15  GFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLK 74

Query: 121 ACTDLGALEVGKWVESFIEK-------------------------------QMVNRSVGL 149
           +C    A E G+ +   + K                               +  +R V  
Sbjct: 75  SCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVS 134

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI  +A  G++  A ++F  +  + +VSW ++I+G A  G   EA+ LF+EM++  V
Sbjct: 135 YTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNV 194

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V +LSAC+    V+ GR+   S  +D G    ++    ++D+  + G+V+ A 
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + + W TLI
Sbjct: 254 GLFEGLSCK-DVVSWNTLI 271


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/479 (47%), Positives = 325/479 (67%), Gaps = 9/479 (1%)

Query: 1   MLEYGVSP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+  G++P N FT+PF+L +CA +  L  G  VH  ++K  F  D+ V+N L+H+Y S  
Sbjct: 25  MIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLY-SVF 83

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L R +FDE   RD VS++ MI GYA +     A+ LF +MQ S    DE+T+V VL
Sbjct: 84  GNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVL 139

Query: 120 SACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--NGR 176
           SAC  LGA ++GK +   +IE  + N++  L  A++DM+AKCG +D AL++FR +  N +
Sbjct: 140 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 199

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           T   + S+IAGLA HG G  A+ +F E++  G+ PD+V FVG+L AC H GL+++G++ F
Sbjct: 200 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLF 259

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +SM N +GI P++EHYGCMVD+L R G ++EA++ +QKMP EAN +IWR L+SAC   G 
Sbjct: 260 ESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 319

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           +K+ E   ++L+  E  H + YVLLS+I A   +WE+  ++R+VM+  G++K PG + IE
Sbjct: 320 VKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 379

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           L   I+ FV  DKSH Q KEI  ML +M  ++K AGYVP T++V+ DI+EE+KE  ++ H
Sbjct: 380 LGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYH 439

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLA+AF L+   P   IRIVKNLR+C DCH A K +S+IY REI VRD  RFHHF++
Sbjct: 440 SEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRN 498



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFI 138
           W+ MI GY+R     +AI L+  M   G+  P+  T   +L++C  L +LE G  V S I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K      + + NALI +++  G+++ A  LF     R +VS+ ++I G A   +   A+
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
            LF EM  +    D+V  V +LSAC+  G  D G+  +     +            ++DM
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 259 LCRSGRVKEAHEFIQKMPIEANP-IIWRTLISACCARGELKLAESITKRLI 308
             + G +  A E  +++        ++ ++I+     G  + A ++ + LI
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI 228


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/477 (47%), Positives = 325/477 (68%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   VL ACA  G + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKC-G 284

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  +S +D +SW+ +IGGY  + L  +A+ LF+ M  SG  P+++TM+++LS
Sbjct: 285 ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS 344

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F SM  R++
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   A  +F  M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ ++PK+EHYGCM+D+   SG  KEA + I  M +E + +IW +L+ AC   G ++
Sbjct: 465 MTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVE 524

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +  K R +++ +GMKK+PG + IE+D
Sbjct: 525 LGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 585 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 644

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 645 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 38/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLKF F  D+++  +L+ MY   G 
Sbjct: 94  MVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGR 153

Query: 58  CE---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
            E                           G IE   K+FDE+  +D VSW+A I GYA  
Sbjct: 154 LEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAET 213

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF++M  + V PDE TMVTVLSAC   G++E+G+ V S+I       ++ + 
Sbjct: 214 GNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIV 273

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+++ A  LF+ ++ + ++SW ++I G        EA+ LF++ML +G  
Sbjct: 274 NALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK 333

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +LSAC+H G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 334 PNDVTMLSILSACAHLGAIDIGRWIHVYID--KRLKGVTNASSLRTSLIDMYAKCGDIEA 391

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
           A +    M +  +   W  +I      G    A  I  R+  N  EP
Sbjct: 392 AQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEP 437



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VFD + E   + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 52  GLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLK 111

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    A + G+ +   + K   +  + +  +LI M+ + G ++ A K+    + R +VS
Sbjct: 112 SCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVS 171

Query: 181 WTSVIAGLAMH-------------------------------GRGLEAVALFEEMLEAGV 209
           +T++I G A                                 G   EA+ LF++M++  V
Sbjct: 172 YTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNV 231

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V +LSAC+  G ++ GR+   S  ND G    ++    ++D+  + G ++ A 
Sbjct: 232 RPDESTMVTVLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 270 EFIQKMPIEANPIIWRTLI 288
              Q +    + I W TLI
Sbjct: 291 GLFQGLS-NKDVISWNTLI 308


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/477 (47%), Positives = 324/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   VL ACA    + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 226 MMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC-G 284

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +S +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+E+TM+++L 
Sbjct: 285 EVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILP 344

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V+    L  +LIDM+AKCGD++ A ++F SM  R++
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   A  +F  M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 405 SSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ I PK+EHYGCM+D+L  SG  KEA E I  M ++ + +IW +L+ AC   G ++
Sbjct: 465 MTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVE 524

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +  K R +++ +GMKK+PG + IE+D
Sbjct: 525 LGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 585 SVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 644

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF D
Sbjct: 645 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXD 701



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 180/377 (47%), Gaps = 75/377 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
           M+  G+ PN +T+PF+LKACA       G+ +HG VLK     D++V  +L+ MY     
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153

Query: 56  -------------------------GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G I   +K+FDE+  +D VSW+A+I GYA  
Sbjct: 154 XEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF++M  + V PDE TMVTVLSAC    ++E+G+ V S+I+      ++ + 
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID++ KCG+V+ A  LF  ++ + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 211 PDDVAFVGLLSACSHCGLVDKGR------------------------------------- 233
           P++V  + +L AC+H G +D GR                                     
Sbjct: 334 PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQ 393

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISA 290
           + FDSM N       +  +  M+      GR   A +   +M    IE + I +  L+SA
Sbjct: 394 QVFDSMLNR-----SLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448

Query: 291 CCARGELKLAESITKRL 307
           C   G L L   I + +
Sbjct: 449 CSHSGMLDLGRHIFRSM 465



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VFD + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 52  GLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLK 111

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    A   G+ +   + K   +  + +  +LI M+ K G  + A K+F   + R +VS
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS 171

Query: 181 WTSVIAGLAMH-------------------------------GRGLEAVALFEEMLEAGV 209
           +T++I G A +                               G   EA+ LF+EM++  V
Sbjct: 172 YTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV 231

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V +LSAC+    ++ GR+   S  +D G    ++    ++D+  + G V+ A 
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS 290

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + I W TLI
Sbjct: 291 GLFEGLSYK-DVISWNTLI 308


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/475 (48%), Positives = 315/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE  ++P+ FT   VL AC  +GDLN G+ +H  +++     ++ V  +LV MY  C G
Sbjct: 204 LLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKC-G 262

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M E+D VSW AMI GYA  GL  +AIDLF QMQ   V PD  T+V VLS
Sbjct: 263 NMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLS 322

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+WV   +++     +  L  ALID++AKCG + +A ++F+ M  +  V 
Sbjct: 323 ACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV 382

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+GLAM+G    +  LF ++ + G+ PD   F+GLL  C+H GLVD+GR YF+SM 
Sbjct: 383 WNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMY 442

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             F + P IEHYGCMVD+L R+G + EAH+ I+ MP+EAN I+W  L+ AC    + +LA
Sbjct: 443 RFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLA 502

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+LI  EP +  NYVLLS+IY+  L+W++  K+R  M+++ ++K PG + IE+D  
Sbjct: 503 ELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGI 562

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GDK H  S++IY  LDE+ +KMK AGYVPTT  VL DI EE+KE  L  HSEKL
Sbjct: 563 VHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKL 622

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+   P   IR+VKNLRVC DCH A K IS I  REI VRD +RFH F++
Sbjct: 623 AIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFRE 677



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 180/302 (59%), Gaps = 7/302 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN FT+PFVLKACA + DL LG  +H  V+K  F  D+ V+ +LV +Y  C G
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC-G 161

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVFD++ +++ VSW+A+I GY  +G   +AID+FR++    + PD  T+V VLS
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS 221

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT LG L  G+W+   I +  + R+V +  +L+DM+AKCG+++KA  +F  M  + IVS
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS 281

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           W ++I G A++G   EA+ LF +M    V PD    VG+LSAC+  G ++ G E+   + 
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLV 340

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            +N+F   P +     ++D+  + G +  A E  + M  E + ++W  +IS     G +K
Sbjct: 341 DRNEFLYNPVLGT--ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVK 397

Query: 299 LA 300
           ++
Sbjct: 398 IS 399



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +F ++ + +   W+ MI G        DAI+ +  M+  G  P+  T   VL AC  L
Sbjct: 66  RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L++G  + + + K   +  V +  +L+ ++AKCG ++ A K+F  +  + +VSWT++I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G    G+  EA+ +F  +LE  + PD    V +LSAC+  G ++ G E+      + G+
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EWIHKCIMEMGM 244

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +  +     +VDM  + G +++A      MP E + + W  +I      G
Sbjct: 245 VRNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNG 293


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/474 (47%), Positives = 324/474 (68%), Gaps = 5/474 (1%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           +GV P+  T+PF+L++ A    L+LG+SVH  +L+F    D  VQ +L+ MY S  G ++
Sbjct: 58  HGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSS-SGLVD 116

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC---PDEITMVTVLS 120
           + R +F  M ER+ +SWS MI GY R G   +A+ LFR+MQ+ GV    P+E TM  VL+
Sbjct: 117 MARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLA 176

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC  LGALE GKW  ++I+K  +   V L  ALIDM+AKCG V+KA  +F ++   + ++
Sbjct: 177 ACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVM 236

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W+++I+GLAMHG   E V LF +M+  GV P+ V F+ +  AC H GLV +G++Y   M
Sbjct: 237 AWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRM 296

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ IIP I+HYGCMVD+  R+GR+KEA   ++ MP+E + ++W  L+S     G+++ 
Sbjct: 297 TEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIET 356

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+LI  EP +   YVLLS++YAK  RWE    +R++M+  G+KK+PG +LIE+  
Sbjct: 357 CELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGG 416

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EF  GD SH ++++I+ ML+E+  ++K  GYV  T EVLLD++EE KE AL+ HSEK
Sbjct: 417 VLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEK 476

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LA+A+  LKT PGTPIRIVKNLR+C DCH A K ISK+++REI+VRD +RFHHF
Sbjct: 477 LALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHF 530


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/500 (45%), Positives = 321/500 (64%), Gaps = 31/500 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSC------ 58
           VSPN  T   +L AC+ + DL  GK ++   +K    + ++ ++N L+ M+ SC      
Sbjct: 235 VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAA 294

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                      I+L RK FD+M ERD VSW+AMI GY R+    
Sbjct: 295 RGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFK 354

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           + + LFR MQ+S V PDE TMV++L+AC  LGALE+G+W +++I+K  +     + NALI
Sbjct: 355 EVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALI 414

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+ KCG+V+KA K+F  M  +   +WT++I GLA +G G EA+ +F  MLEA V PD++
Sbjct: 415 DMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEI 474

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            ++G++ AC+H GLV KG+ +F +M    GI P + HYGCMVD+L R+G +KEA E I  
Sbjct: 475 TYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMN 534

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP++ N I+W +L+ AC     ++LAE     ++  EP + + YVLL +IYA   +W+  
Sbjct: 535 MPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNL 594

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
             +R++M +RG+KKIPG +L+E++  +YEFV GDKSH QSKEIY  L+ M + +  AGY 
Sbjct: 595 HNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYS 654

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P TSEV LD+ EEDKE AL  HSEKLAIA+AL+ +  G  IRIVKNLR+C DCH     +
Sbjct: 655 PDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVV 714

Query: 455 SKIYNREIVVRDRHRFHHFK 474
           SK+YNRE++VRD+ RFHHF+
Sbjct: 715 SKVYNRELIVRDKTRFHHFR 734



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 161/335 (48%), Gaps = 48/335 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSV-HGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML + + P+ FT+PF+LK       L  GK + + AV+      ++ VQ   +H++  C 
Sbjct: 126 MLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLC- 184

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVT 117
           G +   RK+FD     + V+W+ ++ GY R     ++  LF +M+    C  P+ +T+V 
Sbjct: 185 GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVL 244

Query: 118 VLSACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +LSAC+ L  L  GK +   +I++ +V  ++ L NALIDMFA CG++D A  +F  M  R
Sbjct: 245 MLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR 304

Query: 177 TIVSWTSVIAGLA-------------------------------MHGRGLEAVALFEEML 205
            ++SWTS++ G A                                  R  E + LF +M 
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ 364

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKG---REYFD--SMKNDFGIIPKIEHYGCMVDMLC 260
            + V PD+   V +L+AC+H G ++ G   + Y D   +KND  I         ++DM  
Sbjct: 365 MSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFI------GNALIDMYF 418

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + G V++A +   +M  + +   W  +I      G
Sbjct: 419 KCGNVEKAKKIFNEMQ-KKDKFTWTAMIVGLANNG 452



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 147/338 (43%), Gaps = 14/338 (4%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+ C  + ++N    +H   +K     + + +   ++       G +   RKVFDE+ +
Sbjct: 41  LLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK-W 133
                W+ MI GY+R+  S   + L++ M +  + PD  T   +L   T   AL+ GK  
Sbjct: 98  PSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVL 157

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   +    ++ ++ +    I +F+ CG V+ A K+F   +G  +V+W  V++G     R
Sbjct: 158 LNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKR 217

Query: 194 GLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
             E+  LF EM +    V P+ V  V +LSACS    +  G+  ++    +  + P +  
Sbjct: 218 YEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLIL 277

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
              ++DM    G +  A     +M    + I W ++++       + LA          +
Sbjct: 278 ENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYF------D 330

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKI 349
            M E +YV  + +    LR  +  ++  +     M  +
Sbjct: 331 QMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV 368


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/512 (46%), Positives = 318/512 (62%), Gaps = 37/512 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M + G+SP+ FT+PF+LKACA + D  LG  +HG V+K     D  V  +LV +YG C  
Sbjct: 99  MRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGF 158

Query: 59  -----------------------EGGIELGR------------KVFDEMSERDSVSWSAM 83
                                   G I +G+             VFD M E+D VSWS+M
Sbjct: 159 IDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSM 218

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           I GYA  GL  +A+DLF +M   G  PD   MV VL AC  LGALE+G W  + +++   
Sbjct: 219 IQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEF 278

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             +  L  ALIDM+AKCG +D A ++FR M  + IV W + I+GLAM G    A  LF +
Sbjct: 279 LGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQ 338

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           M ++G+ PD   FVGLL AC+H GLVD+GR+YF+SM+  F + P+IEHYGCMVD+L R+G
Sbjct: 339 MEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAG 398

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            + EAH+ ++ MP+EAN I+W  L+  C    + +L E + K+LI  EP +  NYVLLS+
Sbjct: 399 FLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSN 458

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           IY+   +WE   KIR +M +RG+KK+PG + IE+D  ++EF+ GD SH  S++IY  L E
Sbjct: 459 IYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGE 518

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           + + +K +GYVPTT  VL DI EE+KE  +  HSEKLAIAF L+ T P   IR+VKNLRV
Sbjct: 519 LVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRV 578

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH A K IS+   REI+VRD +RFH F D
Sbjct: 579 CGDCHEAIKHISRFTGREIIVRDNNRFHCFND 610



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 43/318 (13%)

Query: 22  GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS 81
           G   L   K VH A+L+    +D ++ N ++  +    G      ++F +  E +   ++
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLR-FSFNFGNTNYSHRIFHQTKEPNIFLFN 77

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
            MI G        ++I+++  M+  G+ PD  T   +L AC  L   ++G  +   + K 
Sbjct: 78  TMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKA 137

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALK--------------------------------- 168
                  +  +L+ ++ KCG +D A K                                 
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMF 197

Query: 169 -----LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
                +F  M  + IVSW+S+I G A +G   EA+ LF +ML  G  PD  A VG+L AC
Sbjct: 198 RRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCAC 257

Query: 224 SHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           +  G ++ G    + M +N+F   P +     ++DM  + GR+  A E  + M  + + +
Sbjct: 258 ARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSAWEVFRGMR-KKDIV 314

Query: 283 IWRTLISACCARGELKLA 300
           +W   IS     G +K A
Sbjct: 315 VWNAAISGLAMSGHVKAA 332


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/475 (45%), Positives = 325/475 (68%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE  +  +  T   VL AC  + +L +G+ +   ++      +  +  +L+ MY  C G
Sbjct: 213 ILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKC-G 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RK+FDEM +RD V+WSAMI GYA+     +A++LF +MQ   V P+E+TMV+VL 
Sbjct: 272 QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLY 331

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGA E GKWV  +I+K+ +  +V L   LID +AKCG +D+++++F+ M+ + + +
Sbjct: 332 SCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFT 391

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I GLA +G G  A+  F  MLE  V P+DV F+G+LSACSH  LVD+GR  F+SM+
Sbjct: 392 WTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMR 451

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF I P+IEHYGCMVD+L R+G ++EA++FI  MP   N ++WRTL+++C A   +++A
Sbjct: 452 RDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMA 511

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + +   EP H  +Y+LLS+ YA + R E   ++R ++ ++ +KKIPG +LIELD  
Sbjct: 512 EKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGV 571

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF   D  H  SKEI++ LD+M +++K+ GYVP T +  L+  EE KE +++ HSEKL
Sbjct: 572 VHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKL 631

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L++T P T IRI KNLR+C DCH+ATKFIS+++ R I+VRDR+RFHHFKD
Sbjct: 632 AIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKD 686



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 173/314 (55%), Gaps = 9/314 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V  +KFT+  VLKAC+ +  L  G+ VH  +LK  F  +  V+NTL+ MY +C G
Sbjct: 112 MHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANC-G 170

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I + R VFD M ER  V+W++M+ GY + GL  + + LFR++    +  D++TM++VL 
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLM 230

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L  LE+G+ +  +I  + + R+  L  +LIDM+AKCG VD A KLF  M+ R +V+
Sbjct: 231 ACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVA 290

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFD 237
           W+++I+G A   R  EA+ LF EM +  V P++V  V +L +C+  G  + G+    Y  
Sbjct: 291 WSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIK 350

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
             K    +    +    ++D   + G +  + E  ++M  + N   W  LI      GE 
Sbjct: 351 KKKMKLTVTLGTQ----LIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEG 405

Query: 298 KLAESITKRLIGNE 311
           K+A      ++ N+
Sbjct: 406 KMALEFFSSMLEND 419



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 13/338 (3%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
            +L+ C    DL   + VH  +LK +   D I  +  L          I+    +F+ + 
Sbjct: 26  LILQQCKTPKDL---QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHID 82

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           + +S +++ MI G A      +A+ LF++M    V  D+ T  +VL AC+ + AL  G+ 
Sbjct: 83  KPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQ 142

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           V + I K     +  + N LI M+A CG +  A  +F  M  R+IV+W S+++G   +G 
Sbjct: 143 VHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGL 202

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIE 250
             E V LF ++LE  +  DDV  + +L AC     ++ G    EY  S     G+     
Sbjct: 203 WDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSK----GLRRNNT 258

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-G 309
               ++DM  + G+V  A +   +M  + + + W  +IS        K A ++   +  G
Sbjct: 259 LTTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISGYAQADRCKEALNLFHEMQKG 317

Query: 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           N   +E   V + +  A L  +E    +   + K+ MK
Sbjct: 318 NVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK 355


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/506 (45%), Positives = 321/506 (63%), Gaps = 32/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+FT   V+KACA I  L  GK  H  ++K  F  D+ VQ  LVHMY  C G
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARC-G 59

Query: 61  GIELGRKVFD-------------------------------EMSERDSVSWSAMIGGYAR 89
            +E    VFD                               EMSERD VSW+A+I GYA+
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +++++F QM+ +G+  D   M +VLSAC DL ALE+G+   +++ +      + +
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            +AL+DM+AK G ++ A ++F  M  R  VSW S+I G A HGRG +AV LFE+ML+AG+
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P++++FVG+LSACSH GLV++GR YF+ M  ++GI+P + HY CM+D+L R+G + EA 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
            FI  MP+E +  +W  L+ AC   G  +LA+ I + L+G E      YVLLS+IYA   
Sbjct: 300 NFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +W+   K+R++M  RG+ K PG + IE+   ++ FV G+ SH Q KEI+E L+ + RKMK
Sbjct: 360 QWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AGYVP  + VL D+ +++KE +L+ HSEKLAIAF ++ T PGT IR+ KNLRVC DCH+
Sbjct: 420 AAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHT 479

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             KFIS  + R+IVVRD +RFHHFKD
Sbjct: 480 VIKFISLNFTRKIVVRDANRFHHFKD 505


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/476 (46%), Positives = 322/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV  + FTYP + KACA +  +  G  +HG + K     D+ VQN+L++MYG C G
Sbjct: 76  MLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKC-G 134

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            IEL   VF+ M  RD  SWSA+I  +A LG+ ++ + +F +M   G C P+E  +V+VL
Sbjct: 135 KIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVL 194

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LGAL++G+     + + +   +V +  +LIDM+ KCG ++K L LF+ M  +  +
Sbjct: 195 SACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQL 254

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S++ +I GLAMHGRG+EA+ +F +MLE G+ PDDV ++G+LSAC+H GLVD+G + F+ M
Sbjct: 255 SYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRM 314

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K + GI P I+HYGC+V ++ R+G + +A E I+ MPI+ N ++WR L+SAC     L++
Sbjct: 315 KLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEI 374

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K L      +  +YV+LS++YA+  RWE   KIR  M ++G  + PG +L++++ 
Sbjct: 375 GEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVER 434

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +IY+FV  D SH Q K +YEM+ +M  ++K  GY P TS+VL D++EE+K   L  HS+K
Sbjct: 435 KIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQK 494

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AFAL+ T  G PIRI +NLR+CNDCH+ TK IS IY REI VRDR+RFHHFKD
Sbjct: 495 LAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKD 550



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 136/270 (50%), Gaps = 11/270 (4%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K VH  VLK++  +     N +     S  G ++    +F ++ +  +  ++ MI GY  
Sbjct: 5   KQVHAQVLKWE--NSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVN 62

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           +    +A+ L+ +M   GV  D  T   +  AC  L ++E G  +  +I K+ +   + +
Sbjct: 63  VMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFV 122

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-LEAG 208
            N+LI+M+ KCG ++ +  +F  M+ R + SW+++IA  A  G   E +++F EM  E  
Sbjct: 123 QNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGS 182

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKN--DFGIIPKIEHYGCMVDMLCRSGRV 265
             P++   V +LSAC+H G +D GR  +   ++N  +  +I +      ++DM  + G +
Sbjct: 183 CRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTS----LIDMYVKCGCI 238

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARG 295
           ++     Q+M ++ N + +  +I+     G
Sbjct: 239 EKGLSLFQRM-VKKNQLSYSVMITGLAMHG 267


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/476 (48%), Positives = 314/476 (65%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ F+   VL AC   GDL  G+ +   + +     ++ V   LV  YG C G
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKC-G 258

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M E++ VSWS+MI GYA  GL  +A+DLF +M   G+ PD   MV VL 
Sbjct: 259 NMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLC 318

Query: 121 ACTDLGALEVGKWVESFIE-KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +C  LGALE+G W  + I   + ++ SV L  ALIDM+AKCG +D+A ++FR M  +  V
Sbjct: 319 SCARLGALELGDWASNLINGNEFLDNSV-LGTALIDMYAKCGRMDRAWEVFRGMRKKDRV 377

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W + I+GLAM G   +A+ LF +M ++G+ PD   FVGLL AC+H GLV++GR YF+SM
Sbjct: 378 VWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSM 437

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  F + P+IEHYGCMVD+L R+G + EAH+ I+ MP+EAN I+W  L+  C    + +L
Sbjct: 438 ECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQL 497

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E + K+LI  EP H  NYVLLS+IYA   +WE+  KIR +M +RG+KKIPG + IE+D 
Sbjct: 498 VEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDG 557

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GD SH  S++IY  L E+ + +K AGYVPTT  VL DI EE+KE  +  HSEK
Sbjct: 558 VVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEK 617

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF L+ T P   I +VKNLRVC DCH A K IS+I  REI+VRD +RFH F D
Sbjct: 618 LAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTD 673



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 176/300 (58%), Gaps = 3/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+SP+ FT+PFVLKACA + D  LG  +H  V+K     D  V+ +L+++Y  C G
Sbjct: 99  MRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKC-G 157

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   KVFD++ +++  SW+A I GY  +G   +AID+FR++   G+ PD  ++V VLS
Sbjct: 158 FIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLS 217

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G L  G+W++ +I +  + R+V +  AL+D + KCG++++A  +F  M  + IVS
Sbjct: 218 ACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVS 277

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+S+I G A +G   EA+ LF +ML  G+ PD  A VG+L +C+  G ++ G ++  ++ 
Sbjct: 278 WSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLI 336

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N    +        ++DM  + GR+  A E  + M  + + ++W   IS     G +K A
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISGLAMSGHVKDA 395



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 4/292 (1%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H A+L+    +D ++ N ++  +    G      ++ D+  E +   ++ MI G   
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLR-FSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVL 85

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                ++I+++  M+  G+ PD  T   VL AC  +   E+G  + S + K        +
Sbjct: 86  NDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFV 145

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             +LI+++ KCG +D A K+F  +  +   SWT+ I+G    G+  EA+ +F  +LE G+
Sbjct: 146 KISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGL 205

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD  + V +LSAC   G +  G E+ D    + G++  +     +VD   + G ++ A 
Sbjct: 206 RPDSFSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVATALVDFYGKCGNMERAR 264

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
                M +E N + W ++I    + G  K A  +  +++ NE +    Y ++
Sbjct: 265 SVFDGM-LEKNIVSWSSMIQGYASNGLPKEALDLFFKML-NEGLKPDCYAMV 314


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/476 (47%), Positives = 315/476 (66%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   VSPNKFTYP +++AC     +  GK +H  VLKF FG D    N L+HMY + + 
Sbjct: 85  MLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 144

Query: 61  GIELGRKVFDEMSERD--SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E  R+VFD M +RD  SVSW+AMI  Y +     +A  LF +M++  V  D+    ++
Sbjct: 145 -LEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 203

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSACT LGALE GKW+  +IEK  +     L   +IDM+ KCG ++KA ++F  +  + I
Sbjct: 204 LSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGI 263

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW  +I GLAMHG+G  A+ LF+EM    V PD + FV +LSAC+H GLV++G+ YF  
Sbjct: 264 SSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQY 323

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M    G+ P +EH+GCMVD+L R+G ++EA + I +MP+  +  +   L+ AC   G  +
Sbjct: 324 MTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 383

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E I K++I  EP +   YVLL+++YA   RWE   K+R++M+ RG+KK PG ++IE +
Sbjct: 384 LGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESE 443

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + + EF+ G ++H Q+KEIY  LDE+   ++  GYVP T  VL DI+EE+KE+ L  HSE
Sbjct: 444 SGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSE 503

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLAIAF LLKT PG  +RI KNLR+C DCH A+K ISK+Y+REI++RDR+RFHHF+
Sbjct: 504 KLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFR 559



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GY R  L+ + I ++ +M    V P++ T   ++ AC    A+E GK + + + K     
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
                N LI M+     +++A ++F +M    R  VSW ++IA      R  EA ALF+ 
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           M    V  D      +LSAC+  G +++G+ +        GI    +    ++DM C+ G
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGK-WIHGYIEKSGIELDSKLATTVIDMYCKCG 246

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +++A E   ++P +     W  +I      G+ + A  + K +
Sbjct: 247 CLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAAIELFKEM 289


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/500 (45%), Positives = 321/500 (64%), Gaps = 30/500 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------ 59
           V P+  T+P +LKAC+ I  L LG+++H  V K  +  ++ V N LV MY SC       
Sbjct: 132 VFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAG 191

Query: 60  ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                                   G  +  R++F+ M +RD VSWS MI GY +     +
Sbjct: 192 LVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKE 251

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
            + LF+ M    + P+E  +V  LSAC  LGA+E G+W+E ++E++ V  +V L  ALID
Sbjct: 252 GLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALID 311

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M++KCG V++AL++F  M  + +++W+++I GLA++G+G +A+ LF +M   GV P++V 
Sbjct: 312 MYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVT 371

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+G+L+ACSH  LVD+G  +F SM + +G+ P   H+ CMVD+  R+G + +A   I+ M
Sbjct: 372 FIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSM 431

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P + N  IW  L++AC   G+ +L E + KRL+  +P H   YVLLS+IYA   RW++  
Sbjct: 432 PFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVA 491

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
           ++R +M +R + K PG + I+L + I+EFV GD SH Q + IY  L EM +++K AGY P
Sbjct: 492 ELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKP 551

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            T +VLLD++EE+KE AL  HSEKLAIAF L+KT PGT IRI KNLRVC DCHSATK IS
Sbjct: 552 DTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLIS 611

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           KIYNREI+VRDR RFHHF+D
Sbjct: 612 KIYNREIIVRDRCRFHHFRD 631



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 44/332 (13%)

Query: 13  YPFV--LKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           YP +  L +C  + DL     +H   +    F D+      L     S  G I   R +F
Sbjct: 36  YPILRHLSSCKTLKDLT---QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLF 92

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGAL 128
             + + D    + +I  YA      DA+  + +M  S V  PD  T   +L AC+++ +L
Sbjct: 93  YRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSL 152

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD------------------------ 164
            +G+ + S + K   +  V + N L+ M+A CG ++                        
Sbjct: 153 RLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGY 212

Query: 165 -------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                   A ++F +M  R +VSW+ +I G     R  E + LF++M+   + P++   V
Sbjct: 213 LKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLV 272

Query: 218 GLLSACSHCGLVDKGR--EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
             LSAC+H G +++G+  E +   KN   +   +     ++DM  + G V+ A E   KM
Sbjct: 273 NALSACAHLGAMEQGQWIERYMERKN---VRLTVRLGTALIDMYSKCGSVERALEVFHKM 329

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRL 307
             E N + W  +I+     G+ K A ++  ++
Sbjct: 330 K-EKNVLAWSAMINGLAINGQGKDALNLFSQM 360



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + PN+      L ACA +G +  G+ +   + +      + +   L+ MY  C G
Sbjct: 259 MMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKC-G 317

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VF +M E++ ++WSAMI G A  G   DA++LF QM++ GV P+E+T + +L+
Sbjct: 318 SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILN 377

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+    ++ G  +  S      +  +      ++D++ + G +D+A  + +SM  +   
Sbjct: 378 ACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNS 437

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           + W +++    +HG       + + +LE   P     +V L +  + CG  D+  E    
Sbjct: 438 AIWGALLNACRIHGDTELGEQVGKRLLELD-PNHGGRYVLLSNIYAACGRWDRVAELRRM 496

Query: 239 MK 240
           M+
Sbjct: 497 MR 498


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/500 (44%), Positives = 323/500 (64%), Gaps = 31/500 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SCE 59
           +SP+ +T+ F+++ CA       G +VHGA++K  F  D HV++ L+ MY       SC 
Sbjct: 107 MSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCH 165

Query: 60  ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                                   G I   R +FD M +RD VSW+AMI GYA+ G S +
Sbjct: 166 RVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSRE 225

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A++LF+ MQ+ GV  +E++M++V++ACT LGAL+ GKW  ++IEK  +  +V L  AL+D
Sbjct: 226 ALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVD 285

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ KCG+VD+ALK+F  MN + + +W++ I GLAM+G G + + LF  M   G+ P+++ 
Sbjct: 286 MYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEIT 345

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+ +L  CS  G VD+GR +FDSMK D GI P++EHYGCMVD+  R+GR++EA  FI  M
Sbjct: 346 FISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTM 405

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ +   W  L++AC     ++L E  +++LI  E  +   YV LS+IYA    W++ +
Sbjct: 406 PLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVS 465

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
            +R+ M   G+ K+PG +++E++ E++EF  GDKSH     I  M  E+ +++K AGYV 
Sbjct: 466 NVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVA 525

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
           +T+ VL DI EE+KEDAL KHSEK+AIAF L     G PIRIVKNLR+C DCH  +K IS
Sbjct: 526 STNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMIS 585

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           KI+ REI+VRDR+RFHHFKD
Sbjct: 586 KIFEREIIVRDRNRFHHFKD 605



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+ +   V+ AC  +G L+ GK  H  + K +    +++   LV MY  C G ++ 
Sbjct: 237 GVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKC-GNVDR 295

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF EM+E++  +WS  IGG A  G     ++LF  M+  G+ P+EIT ++VL  C+ 
Sbjct: 296 ALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSV 355

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           +G ++ G+   +S      +   +     ++D++ + G +++AL    +M
Sbjct: 356 VGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTM 405


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/477 (47%), Positives = 324/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA    + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 211 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC-G 269

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +S +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 270 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 329

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+E+G+W+  +I K++  V  +     +LIDM+AKCGD++ A ++F S+  R++
Sbjct: 330 ACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSL 389

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   A  +F  M +  + PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 390 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRS 449

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK D+ I PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 450 MKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 509

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +  KIR +++ +GMKK+PG + IE+D
Sbjct: 510 LGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 569

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 570 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 629

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 630 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 686



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 177/343 (51%), Gaps = 34/343 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK  +  D++V  +L+ MY    G
Sbjct: 79  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQ-NG 137

Query: 61  GIELGRKVFDEMSERDSVS-------------------------------WSAMIGGYAR 89
            +E  RKVFD+ S RD VS                               W+AMI GYA 
Sbjct: 138 RLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAE 197

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G + +A++LF++M  + V PDE TMV+V+SAC    ++E+G+ V S+I+      ++ +
Sbjct: 198 TGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKI 257

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NALID++ KCG+V+ A  LF  ++ + ++SW ++I G        EA+ LF+EML +G 
Sbjct: 258 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 317

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKIEHYGCMVDMLCRSGRVKEA 268
            P+DV  + +L AC+H G ++ GR     +     G+     H   ++DM  + G ++ A
Sbjct: 318 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
            +    + +  +   W  +I      G    A  I  R+  NE
Sbjct: 378 QQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 419



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 37  GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLK 96

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    A   G+ +   + K   +  + +  +LI M+ + G ++ A K+F   + R +VS
Sbjct: 97  SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 156

Query: 181 WTSVIAGLAMH-------------------------------GRGLEAVALFEEMLEAGV 209
           +T++I G A                                 G   EA+ LF+EM++  V
Sbjct: 157 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 216

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+    ++ GR+   S  +D G    ++    ++D+  + G V+ A 
Sbjct: 217 RPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAC 275

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + I W TLI
Sbjct: 276 GLFEGLSYK-DVISWNTLI 293


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/500 (44%), Positives = 325/500 (65%), Gaps = 30/500 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-------- 56
           G+ P+  TYPF++KAC   G L++G   HG +++  F  D++VQN+LV MY         
Sbjct: 108 GLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSA 167

Query: 57  -------SC---------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                  SC                G +   RK+FD+M E++ V+WS MI GYA+     
Sbjct: 168 SYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFD 227

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
            AI+L+  +Q  GV  +E  MV+V+++C  LGALE+G+    +I +  +  ++ L  AL+
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALV 287

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+A+CG +DKA+ +F  + GR  +SWT++IAG AMHG   +A+  F  M +AG+ P ++
Sbjct: 288 DMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F  +LSACSH GLV++G E F+SMK D+ I P++EHYGCMVD+L R+G++ EA +F+ +
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNE 407

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP++ N  IW  L+ AC      ++AE   K LI  +P H   YVLLS+IYA+  +WE  
Sbjct: 408 MPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENV 467

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
             IR++M +RG+ K PG TL E+D ++++F  GDK+H + ++I  M +E+  K++ AGY 
Sbjct: 468 ENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYT 527

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
               + L DI+EE+KE  +++HSEKLAIA+A+++T    PIRIVKNLRVC DCH+ATK I
Sbjct: 528 GNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLI 587

Query: 455 SKIYNREIVVRDRHRFHHFK 474
           SK+Y RE++VRDR+RFHHFK
Sbjct: 588 SKVYERELIVRDRNRFHHFK 607



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 136/310 (43%), Gaps = 37/310 (11%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L++C  +  L   K +H  +++     D+   + L+ +    +  ++   +VF ++   +
Sbjct: 22  LESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISI-SINKNLLDYAAQVFYQIQNPN 77

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
              +++ I G++       +   + Q + +G+ PD +T   ++ ACT  G+L++G     
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHG 137

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            I +   +  V + N+L+ M++  GD+  A  +FR ++   +VSWTS++AG    G    
Sbjct: 138 QIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTS 197

Query: 197 AVALFEEMLEA-------------------------------GVPPDDVAFVGLLSACSH 225
           A  LF++M E                                GV  ++   V ++++C+H
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAH 257

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            G ++ G    D +  +   +  I     +VDM  R G + +A     ++P   + + W 
Sbjct: 258 LGALELGERAHDYILRNKMTVNLILG-TALVDMYARCGSIDKAIWVFDQLP-GRDALSWT 315

Query: 286 TLISACCARG 295
           TLI+     G
Sbjct: 316 TLIAGFAMHG 325


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/475 (46%), Positives = 310/475 (65%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV PN+ TY  +L AC+    L  G+ +H  V++     D HV NTLV+MY  C G
Sbjct: 420 MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMC-G 478

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD M +RD V+++AMIGGYA   L  +A+ LF ++Q  G+ PD++T + +L+
Sbjct: 479 SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 538

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC + G+LE  + + + + K        + NAL+  +AKCG    A  +F  M  R ++S
Sbjct: 539 ACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVIS 598

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G A HGRG +A+ LFE M   GV PD V FV LLSACSH GL+++GR YF SM 
Sbjct: 599 WNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 658

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF IIP IEHYGCMVD+L R+G++ EA   I+ MP +AN  IW  L+ AC   G + +A
Sbjct: 659 QDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVA 718

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +  +  +  +   YV LSH+YA    W+   K+R++M++RG+ K PG + I++ ++
Sbjct: 719 ERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDK 778

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D+SH QS++IY  LD +   MK  GYVP T  V+ D++E +KE+A+  HSE+L
Sbjct: 779 LHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERL 838

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TPPGT I I KNLRVC DCH+ATKFISKI +REI+ RD +RFHHFKD
Sbjct: 839 AIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKD 893



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 166/307 (54%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PNK TY  +L AC     L+ GK +H  V K  F  DI VQN L+ MY  C G
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRC-G 377

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R VFD+M  +D +SW+AMIGG A+ G   +A+ ++++MQ +GV P+ +T  ++L+
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   ALE G+ +   + +  +     + N L++M++ CG V  A ++F  M  R IV+
Sbjct: 438 ACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVA 497

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++I G A H  G EA+ LF+ + E G+ PD V ++ +L+AC++ G ++  RE   ++ 
Sbjct: 498 YNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE-IHTLV 556

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G          +V    + G   +A    +KM  + N I W  +I      G  + A
Sbjct: 557 RKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQHGRGQDA 615

Query: 301 ESITKRL 307
             + +R+
Sbjct: 616 LQLFERM 622



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV PN+ TY  VL A +    L  GK+VH  +L      D  V   LV MY  C G
Sbjct: 218 MEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC-G 276

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R+VF+++  RD ++W+ MIGG A  G   +A +++ QMQ  GV P++IT V +L+
Sbjct: 277 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +  AL  GK + S + K      +G+ NALI M+++CG +  A  +F  M  + ++S
Sbjct: 337 ACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVIS 396

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I GLA  G G EA+ +++EM +AGV P+ V +  +L+ACS    ++ GR     + 
Sbjct: 397 WTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV 456

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G+         +V+M    G VK+A +   +M I+ + + +  +I    A    K A
Sbjct: 457 -EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEA 514

Query: 301 ESITKRL 307
             +  RL
Sbjct: 515 LKLFDRL 521



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++G++P++ T    L +C   G L  G+ +H   ++     D+ V N +++MY  C G
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKC-G 175

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R+VFD+M ++  VSW+  IGGYA  G S  A ++F++M+  GV P+ IT ++VL+
Sbjct: 176 SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLN 235

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A +   AL+ GK V S I          +  AL+ M+AKCG      ++F  +  R +++
Sbjct: 236 AFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 295

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GLA  G   EA  ++ +M   GV P+ + +V LL+AC +   +  G+E   S  
Sbjct: 296 WNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE-IHSRV 354

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              G    I     ++ M  R G +K+A     KM +  + I W  +I      G
Sbjct: 355 AKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSG 408



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 175/343 (51%), Gaps = 8/343 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           + + G   N   Y  +LK C  + DL  G+ VH  +++ +   D +  N L++MY  C G
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQC-G 72

Query: 61  GIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            IE  R+V+ ++S  ER   SW+AM+ GY + G    A+ L RQMQ  G+ PD  T+++ 
Sbjct: 73  SIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSF 132

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LS+C   GALE G+ +     +  +   V + N +++M+AKCG +++A ++F  M  +++
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWT  I G A  GR   A  +F++M + GV P+ + ++ +L+A S    +  G+     
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + N  G          +V M  + G  K+  +  +K+ +  + I W T+I      G  +
Sbjct: 253 ILNA-GHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGYWE 310

Query: 299 LAESITKRLIGNEPM-HESNYVLLSH--IYAKLLRWEKKTKIR 338
            A  +  ++     M ++  YV+L +  + +  L W K+   R
Sbjct: 311 EASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSR 353



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 151/328 (46%), Gaps = 28/328 (8%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+D+ + +Q  G   +    + +L  C ++  L  G+ V   I +          NALI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 156 MFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           M+ +CG +++A ++++ ++   RT+ SW +++ G   +G   +A+ L  +M + G+ PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
              +  LS+C   G ++ GRE +F +M+   G++  ++   C+++M  + G ++EA E  
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRL-----IGNEPMHESNYVLLSHIYAK 327
            KM  + + + W   I      G  + A  I +++     + N   + S  VL +     
Sbjct: 185 DKME-KKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYIS--VLNAFSSPA 241

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML------ 381
            L+W K    R +          G+ L+++  +     CG  S+   ++++E L      
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAK-----CG--SYKDCRQVFEKLVNRDLI 294

Query: 382 --DEMGRKMKKAGYVPTTSEVLLDINEE 407
             + M   + + GY    SEV   +  E
Sbjct: 295 AWNTMIGGLAEGGYWEEASEVYNQMQRE 322


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/476 (45%), Positives = 321/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V P+ FTYP VLKACA +  +  G  +HG V K    DD++VQN+L++MYG C  
Sbjct: 123 MLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRD 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            IE+   +F  M ++   SWSA+I  +A L +  + + LF  M   G    +E  +V VL
Sbjct: 183 -IEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVL 241

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LGA  +G+     + K +   +V +  +L+DM+ KCG + K L LF++M  +  +
Sbjct: 242 SACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQL 301

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S++ +I+GL +HG G +A+ +F EM+E G+ PDDV +V +LSACSH GLVD+G + FD M
Sbjct: 302 SYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKM 361

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K ++ I P ++HYGCMVD+  R+G ++EA + +Q MPI+AN ++WR+L+SAC     LKL
Sbjct: 362 KFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKL 421

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + L      + S+Y++LS++YA+  +WE   KIR  M  RG+ + PG +L+E+ +
Sbjct: 422 GEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKS 481

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++Y+FV  DKS+ +S  IY+M+ +M  +++  GY+P TS+V+LD++EE+K + L  HS+K
Sbjct: 482 KVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQK 541

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAFAL+ T  G+ IRI++NLR+CNDCHS TK +S IY REI VRDR+RFHHFKD
Sbjct: 542 LAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKD 597



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           Y  ++K C  + +    K VH  +LKF  F D     + L     S    ++    +F +
Sbjct: 35  YLCLVKKCKSLEEF---KQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQ 91

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           + E  +  ++ MI GY       +AI L+  M    V PD  T   VL AC  L  ++ G
Sbjct: 92  LDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEG 151

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             +   + K  +   V + N+LI+M+ KC D++ +  +FR M  +++ SW+++IA  A  
Sbjct: 152 MQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASL 211

Query: 192 GRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
               E +ALFE+M   G    ++   V +LSAC+H G    GR    S+  +   +  + 
Sbjct: 212 AMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITEL-NVA 270

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-- 308
               ++DM  + G +++     Q M    N + +  +IS     G  + A  I   ++  
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLFQNMT-RKNQLSYSVIISGLGLHGYGRQALQIFSEMVEE 329

Query: 309 GNEP 312
           G EP
Sbjct: 330 GLEP 333


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/510 (45%), Positives = 327/510 (64%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +GV P+  T+PF+L++ A    L+LG+SVH  +L+F    D  VQ +L+ MY SC G
Sbjct: 55  MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSC-G 113

Query: 61  GIELGRKVFDE-------------------------------MSERDSVSWSAMIGGYAR 89
            +   R+VFDE                               M ER+ +SWS MI GY R
Sbjct: 114 NLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVR 173

Query: 90  LGLSTDAIDLFRQMQISGVC---PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
            G   +A+ LFR+MQ+ GV    P+E TM  VL+AC  LGALE GKW  ++I+K  +   
Sbjct: 174 CGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVD 233

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           V L  ALIDM+AKCG V+KA  +F ++   + +++W+++I+GLAMHG   E V LF +M+
Sbjct: 234 VVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI 293

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             GV P+ V F+ +  AC H GLV +G++Y   M  D+ IIP I+HYGCMVD+  R+GR+
Sbjct: 294 NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRI 353

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
           KEA   ++ MP+E + ++W  L+S     G+++  E   K+LI  EP +   YVLLS++Y
Sbjct: 354 KEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVY 413

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           AK  RWE    +R++M+  G+KK+PG +LIE+   ++EF  GD SH ++++I+ ML+E+ 
Sbjct: 414 AKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 473

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            ++K  GYV  T EVLLD++EE KE AL+ HSEKLA+A+  LKT PGTPIRIVKNLR+C 
Sbjct: 474 ERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICR 533

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH A K ISK+++REI+VRD +RFHHF  
Sbjct: 534 DCHVAIKMISKVFDREIIVRDCNRFHHFTQ 563


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/477 (46%), Positives = 323/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA  G + LG+ VH  +     G ++ + N L+ +Y  C G
Sbjct: 226 MMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKC-G 284

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  +S +D +SW+ MIGGY  L L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 285 EVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILP 344

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA++ G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F SM+ RT+
Sbjct: 345 ACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTL 404

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +  ++I G AMHGR   A  +F  M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 405 SACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRS 464

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  ++ I PK+EHYGCM+D+L   G  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 465 MTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVE 524

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  ++LI  EP +  +YVLLS+IYA   RW +   IR +++ +GMKK+PG + IE+D
Sbjct: 525 LGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE K+ AL  HSE
Sbjct: 585 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSE 644

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 645 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 190/377 (50%), Gaps = 69/377 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
           M+  G+ PN +T+PF+LK+CA +     G+ +HG VLK  +  D++V  +L+ MY     
Sbjct: 94  MISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGR 153

Query: 56  ---------GSCE----------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                    GS                  G IE  +K+FDE+  +D VSW+A+I GYA  
Sbjct: 154 WKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADT 213

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G + +A+DLF++M  + V PDE TMVTV+SAC   G++++G+ V S+I+   +  ++ + 
Sbjct: 214 GNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIV 273

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+V+ A  LF+ ++ + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 274 NALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGEN 333

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+  G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 334 PNDVTMLSILPACAQLGAIDFGRWIHVYID--KRIKGVTNASSLRTSLIDMYAKCGDIEA 391

Query: 268 AHEFIQKM----------------------------------PIEANPIIWRTLISACCA 293
           AH+    M                                   IE + I +  L+SAC  
Sbjct: 392 AHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 451

Query: 294 RGELKLAESITKRLIGN 310
            G L L   I + +  N
Sbjct: 452 SGMLDLGRRIFRSMTQN 468



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       AI L+  M   G+ P+  T   +L 
Sbjct: 52  GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLK 111

Query: 121 ACTDLGA-----------LEVGKWVESFIEKQMVN--------------------RSVGL 149
           +C  L             L++G  ++ ++   +++                    R V  
Sbjct: 112 SCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVS 171

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI  +A  G ++ A K+F  +  + +VSW ++I+G A  G   EA+ LF+EM++  V
Sbjct: 172 YTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNV 231

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+  G +  GR+   S  +D G+   ++    ++D+  + G V+ A 
Sbjct: 232 KPDESTMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETAC 290

Query: 270 EFIQKMPIEANPIIWRTLI 288
              Q +    + I W T+I
Sbjct: 291 GLFQGLS-NKDVISWNTMI 308


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/477 (45%), Positives = 321/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ A A  G + LG+ VH  +    FG ++ + N L+  Y  C G
Sbjct: 186 MMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC-G 244

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  +S +D +SW+ +IGGY  L L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 245 EMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILH 304

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM++KCGD++ A ++F SM  +++
Sbjct: 305 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSL 364

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +W ++I G AMHGR   A  +F  M +  + PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 365 PAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRS 424

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M +++ I PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 425 MTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVE 484

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E   + L   EP +  +YVLLS+IYA   RW +  +IR +++ +GMKK+PG + IE+D
Sbjct: 485 LGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEID 544

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 545 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSE 604

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T P T + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 605 KLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 661



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 176/344 (51%), Gaps = 36/344 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M+  G+ PN +T+PF+LK+CA +     G  +HG VLK  +  D++V  +L+ MY   E 
Sbjct: 54  MISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNER 113

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G IE  R +FDE+  +D VSW+AMI GY   
Sbjct: 114 LEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVET 173

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF++M  + V PDE TMVTV+SA    G++E+G+ V S+I       ++ + 
Sbjct: 174 GNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIV 233

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID ++KCG+++ A  LF  ++ + ++SW  +I G        EA+ LF+EML +G  
Sbjct: 234 NALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES 293

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 294 PNDVTMLSILHACAHLGAIDIGRWIHVYID--KRLKGVTNASSLRTSLIDMYSKCGDIEA 351

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           AH+    M  ++ P  W  +I      G    A  I  R+  NE
Sbjct: 352 AHQVFNSMLHKSLP-AWNAMIFGFAMHGRANAAFDIFSRMRKNE 394



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 32/239 (13%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 12  GLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLK 71

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  L A + G  +   + K      + +  +LI M+ +   ++ A K+F   + R +VS
Sbjct: 72  SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVS 131

Query: 181 WTSVIAGLAMHG-----RGL--------------------------EAVALFEEMLEAGV 209
           +T+++ G A  G     R +                          EA+ LF+EM++  V
Sbjct: 132 YTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNV 191

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            PD+   V ++SA +  G ++ GR+   S   D G    ++    ++D   + G ++ A
Sbjct: 192 RPDESTMVTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/471 (46%), Positives = 317/471 (67%), Gaps = 5/471 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GVSP+ FT+PFVLKACA    L  G  +H  + K  F  D++VQN L+H YG C G ++ 
Sbjct: 82  GVSPDHFTFPFVLKACA---RLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCC-GFLDF 137

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACT 123
             KVF+EM ERD VSWS+MI  +A+ G   +A+ LF++MQ+ G V PDE+ +++V+SA +
Sbjct: 138 ALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAIS 197

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LG LE+GKW+  FI +  +  +V L  AL+DMF++CG +++++++F  M  R +++WT+
Sbjct: 198 ILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTA 257

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I GLA+HGR  EA+ +F EM   G  PD V F G+L ACSH GLV +G   F+S++N++
Sbjct: 258 LINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+ P  EHYGCMVD+L R+G + EA +F+  MPI  N IIWRTL+ AC     ++LAE +
Sbjct: 318 GMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKV 377

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            +++   +  H+ +YVLLS++Y  + RW +K  +R  M ++ + K PG +LI +++ I+E
Sbjct: 378 KEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHE 437

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV GD +H Q + I E L  M   +K  GY P  S VL DI EE+KE  L  HSEKLA+A
Sbjct: 438 FVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVA 497

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           FALL       IR++KNLR+C+DCH   K+ S ++ REI++RDR+RFHHF 
Sbjct: 498 FALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFS 548



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 151/312 (48%), Gaps = 19/312 (6%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           ++  L+    S    +   R +FD ++  D+ +++ +I  +A    S        +M ++
Sbjct: 23  LRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMAMA 81

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           GV PD  T   VL AC     L+ G  + S + K   +  V + N LI  +  CG +D A
Sbjct: 82  GVSPDHFTFPFVLKAC---ARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA 138

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH 225
           LK+F  M  R +VSW+S+IA  A +G G EA+ALF+ M   G V PD+V  + ++SA S 
Sbjct: 139 LKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISI 198

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            G ++ G+ +     +  G+   +     +VDM  R G ++E+     +M  E N + W 
Sbjct: 199 LGDLELGK-WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWT 256

Query: 286 TLISACCARGELKLAESI----TKRLIGNEPMHES-NYVLLSHIYAKLLR--WEKKTKIR 338
            LI+     G  + AE++      R  G +P H +   VL++  +  L+   W     IR
Sbjct: 257 ALINGLAVHG--RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR 314

Query: 339 EVMDKRGMKKIP 350
              ++ GM+ +P
Sbjct: 315 ---NEYGMEPLP 323


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G  SP+K T+PFVLKACA I   + GK VH  ++K  FG D++V N L+H+YGSC 
Sbjct: 198 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 256

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L RKVFDEM ER  VSW++MI    R G    A+ LFR+MQ S   PD  TM +VL
Sbjct: 257 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 315

Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  LG+L +G W  +F+ ++    V   V + N+LI+M+ KCG +  A ++F+ M  R
Sbjct: 316 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 375

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + SW ++I G A HGR  EA+  F+ M++    V P+ V FVGLL AC+H G V+KGR+
Sbjct: 376 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 435

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  D+ I P +EHYGC+VD++ R+G + EA + +  MP++ + +IWR+L+ ACC +
Sbjct: 436 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 495

Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           G  ++L+E I + +IG +  +ES+       YVLLS +YA   RW     +R++M + G+
Sbjct: 496 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 555

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
           +K PG + IE++   +EF  GD SH Q+K+IY+ L  +  +++  GY+P  S+  L+D  
Sbjct: 556 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 615

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           N+  KE +L  HSE+LAIAF L+  PP TPIRI KNLRVCNDCH  TK ISK++N EI+V
Sbjct: 616 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 675

Query: 465 RDRHRFHHFKD 475
           RDR RFHHFKD
Sbjct: 676 RDRVRFHHFKD 686



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 50/228 (21%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFR 171
           + ++   C+D+  L   K + +F  +        ++ L   ++ + +   DV+ A ++F 
Sbjct: 108 IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 164

Query: 172 SMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH---- 225
           S+   +   W ++I   A    R  EA  L+ +MLE G   PD   F  +L AC++    
Sbjct: 165 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 224

Query: 226 -------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
                                          CG +D  R+ FD M         +  +  
Sbjct: 225 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 279

Query: 255 MVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300
           M+D L R G    A +  ++M    E +    ++++SAC   G L L 
Sbjct: 280 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLG 327


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/467 (47%), Positives = 325/467 (69%), Gaps = 3/467 (0%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +PN FT  FVLKAC+ I  L  GK +H  +L+  F    +VQ++LV+ Y  CE  I + R
Sbjct: 89  NPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEE-ITIAR 147

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFDE++ER+ V WSAM+ GYARLG+  +A+ +FR+MQ+ G+ PDE+++V VLSAC  +G
Sbjct: 148 KVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVG 207

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL++GKWV ++I+K+M++  + L  ALI+M+AKCG ++KA ++F  M  +   +W+S+I 
Sbjct: 208 ALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIV 267

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLA+HG   +A+ +F  M EA   P+ V F+G+LSAC+H GLV  G+ Y+ SM  + GI 
Sbjct: 268 GLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIE 326

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +EHYGCMVD+LCR G + EA++F   +P   +P+IWRTL+ A      L+ AE +  +
Sbjct: 327 PSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGK 385

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP    NY++L+++YA + + EK + +R++M + G+K +PG T IE+D  ++ FV 
Sbjct: 386 LLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVT 445

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH +++EI + L ++  K+  +GY P  S VL  +N+E+KE+ L +HSE+LAIA+ L
Sbjct: 446 GDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGL 505

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           +KT     IRIVKNLRVC DCH  TK ISKIY+REI+VRDR RFH F
Sbjct: 506 MKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKF 552



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P++ +   VL ACA +G L++GK VH  + K     D+ +   L++MY  C G IE 
Sbjct: 188 GIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKC-GCIEK 246

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++FDEM  +DS +WS+MI G A  GL+ DA+++F +M+ +   P+ +T + +LSAC  
Sbjct: 247 AREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAH 306

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G +  GK   S + +  +  S+     ++D+  + G +D+A      +     V W ++
Sbjct: 307 GGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTL 366

Query: 185 IAG 187
           +  
Sbjct: 367 LVA 369



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAG-LAMHGRGLEAVALFEEMLEAGVP-PDDVAFVG 218
           G+ D A K+F  +    I ++ SVI G L       E + LF++M+  G P P+      
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 219 LLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           +L ACS    +++G++ +   +++ F   P ++    +V+   +   +  A +   ++  
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQ--SSLVNFYSKCEEITIARKVFDEI-T 154

Query: 278 EANPIIWRTLISACCARGELKLAESITK--RLIGNEP 312
           E N + W  ++S     G +  A  + +  +++G EP
Sbjct: 155 ERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEP 191


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G  SP+K T+PFVLKACA I   + GK VH  ++K  FG D++V N L+H+YGSC 
Sbjct: 118 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 176

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L RKVFDEM ER  VSW++MI    R G    A+ LFR+MQ S   PD  TM +VL
Sbjct: 177 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 235

Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  LG+L +G W  +F+ ++    V   V + N+LI+M+ KCG +  A ++F+ M  R
Sbjct: 236 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 295

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + SW ++I G A HGR  EA+  F+ M++    V P+ V FVGLL AC+H G V+KGR+
Sbjct: 296 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 355

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  D+ I P +EHYGC+VD++ R+G + EA + +  MP++ + +IWR+L+ ACC +
Sbjct: 356 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 415

Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           G  ++L+E I + +IG +  +ES+       YVLLS +YA   RW     +R++M + G+
Sbjct: 416 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 475

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
           +K PG + IE++   +EF  GD SH Q+K+IY+ L  +  +++  GY+P  S+  L+D  
Sbjct: 476 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 535

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           N+  KE +L  HSE+LAIAF L+  PP TPIRI KNLRVCNDCH  TK ISK++N EI+V
Sbjct: 536 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 595

Query: 465 RDRHRFHHFKD 475
           RDR RFHHFKD
Sbjct: 596 RDRVRFHHFKD 606



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 88/227 (38%), Gaps = 50/227 (22%)

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFRS 172
            TVL  C+D+  L   K + +F  +        ++ L   ++ + +   DV+ A ++F S
Sbjct: 29  ATVLQTCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDS 85

Query: 173 MNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH----- 225
           +   +   W ++I   A    R  EA  L+ +MLE G   PD   F  +L AC++     
Sbjct: 86  IENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 145

Query: 226 ------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
                                         CG +D  R+ FD M         +  +  M
Sbjct: 146 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNSM 200

Query: 256 VDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300
           +D L R G    A +  ++M    E +    ++++SAC   G L L 
Sbjct: 201 IDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLG 247


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/477 (46%), Positives = 323/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA    + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 226 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC-G 284

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +S +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 285 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 344

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+E+G+W+  +I K++  V  +     +LIDM+AKCGD++ A ++F S+  R++
Sbjct: 345 ACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSL 404

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   A  +F  M +  + PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK D+ I PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC     ++
Sbjct: 465 MKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVE 524

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +  KIR +++ +GMKK+PG + IE+D
Sbjct: 525 LGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 585 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 644

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 645 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 177/343 (51%), Gaps = 34/343 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK  +  D++V  +L+ MY    G
Sbjct: 94  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQ-NG 152

Query: 61  GIELGRKVFDEMSERDSVS-------------------------------WSAMIGGYAR 89
            +E  RKVFD+ S RD VS                               W+AMI GYA 
Sbjct: 153 RLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAE 212

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G + +A++LF++M  + V PDE TMV+V+SAC    ++E+G+ V S+I+      ++ +
Sbjct: 213 TGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKI 272

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NALID++ KCG+V+ A  LF  ++ + ++SW ++I G        EA+ LF+EML +G 
Sbjct: 273 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKIEHYGCMVDMLCRSGRVKEA 268
            P+DV  + +L AC+H G ++ GR     +     G+     H   ++DM  + G ++ A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
            +    + +  +   W  +I      G    A  I  R+  NE
Sbjct: 393 QQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 434



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 52  GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLK 111

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    A   G+ +   + K   +  + +  +LI M+ + G ++ A K+F   + R +VS
Sbjct: 112 SCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 171

Query: 181 WTSVIAGLAMH-------------------------------GRGLEAVALFEEMLEAGV 209
           +T++I G A                                 G   EA+ LF+EM++  V
Sbjct: 172 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 231

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+    ++ GR+   S  +D G    ++    ++D+  + G V+ A 
Sbjct: 232 RPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAC 290

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + I W TLI
Sbjct: 291 GLFEGLSYK-DVISWNTLI 308


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/473 (46%), Positives = 317/473 (67%), Gaps = 5/473 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+    P+   Y  +L     +G++NL   +   + +     D+   NT++H + S  G
Sbjct: 162 ILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPE----RDLVSWNTMIHGHASL-G 216

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +K+FD   ERD +SWS+MI  YA+   S +A+ LF +MQ++ V PD++TMV+VLS
Sbjct: 217 DVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLS 276

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC D+GAL +GK +   IE+  +   + L  +L+DM+AKCGD+D +L++F  MN R + +
Sbjct: 277 ACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFA 336

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G  A+  F +M+   + P+DV F+G+LSACSH GLVD+G  YF SM 
Sbjct: 337 WSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMS 396

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + + PKIEHYGC+VD+L R+GR++EA E I+ MP   + I+WR L+ AC     +++A
Sbjct: 397 KVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIA 456

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E  T  L+  EP  + NYVLLS+IY++   W+K   +R +M    ++K+PGS+ IE+DN 
Sbjct: 457 EEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNA 516

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EFV GD+SH +SK+I  ML E+  ++K  GY P T+ VL D +E++KE+AL  HSEKL
Sbjct: 517 VHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKL 576

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           AIAF LL T PG+ IRIVKNLRVC+DCH A K IS+ Y R I+VRDR+RFHHF
Sbjct: 577 AIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHF 629



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 128/341 (37%), Gaps = 69/341 (20%)

Query: 26  LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL--GRKVFDEMSERDSVSWSAM 83
           LN    +H  ++K     +  V   L+    +C    +L   R VFDE+   D+  W+ M
Sbjct: 16  LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           I  Y       +++ LF QM+     P D  ++  V+ AC  L     G+ + + + K  
Sbjct: 76  IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIG 135

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALK-------------------------------LFR 171
           +   + +  ALI+M+AK GD++ A                                 LF 
Sbjct: 136 LGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFD 195

Query: 172 SMNGRTIVSWTSVIAGLAMHG-------------------------------RGLEAVAL 200
            M  R +VSW ++I G A  G                               +  EA+ L
Sbjct: 196 RMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRL 255

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDML 259
           F EM  A V PD V  V +LSAC   G +  G+   + + +N   I  K+     +VDM 
Sbjct: 256 FHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLG--TSLVDMY 313

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G +  +      M    +   W  +I      G  +LA
Sbjct: 314 AKCGDIDNSLRVFNGMN-NRDVFAWSAMIMGLANHGFGELA 353


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/477 (45%), Positives = 316/477 (66%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P+K ++  +L++CA  G+  LG++ H  ++K  F  D+ +Q  L+  Y    G
Sbjct: 21  MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAK-HG 79

Query: 61  GIELGRKVFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E  R +FD M+ER+S  V+W+ MI  Y + G    AI +F+QMQ   V P E+TMV++
Sbjct: 80  YVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSL 139

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSAC  LGAL++G+W+  +I  + +   V L NALIDM+ KCG ++ A+ +F  ++ + I
Sbjct: 140 LSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNI 199

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             W S+I GL M+GRG EA+A F  M + G+ PD V FVG+LS CSH GL+  G+ YF  
Sbjct: 200 FCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSE 259

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M   +G+ P +EHYGCMVD+L R+G +KEA E I+ MP++ N ++  +L+ AC    + K
Sbjct: 260 MLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTK 319

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E +T++L+  +P    NYV LS++YA L RW+     R++M KRG+ K PG + IE++
Sbjct: 320 LGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVN 379

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N ++EFV GD SH Q  +I   LDE+ +++K  G+VP T+ VL DI EE+KE A+  HSE
Sbjct: 380 NIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSE 439

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++A+AF L+ TPPG  IR+VKNLR C+DCHSA K IS  + REI+VRDR RFHHF++
Sbjct: 440 RIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRN 496



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G+  D +  +  M  + V P + +   +L +C   G  ++G+     I K      + L 
Sbjct: 9   GVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQ 68

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
             L+D +AK G V++A  LF +M  R    V+W ++I+     G    A+++F++M    
Sbjct: 69  TGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 128

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V P +V  V LLSAC+H G +D G E+         +   +     ++DM C+ G ++ A
Sbjct: 129 VKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAA 187

Query: 269 HEFIQKMPIEANPIIWRTLISACC--ARGELKLAESITKRLIGNEP 312
            +    +    N   W ++I       RGE  +A  I     G +P
Sbjct: 188 IDVFHGLS-RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKP 232


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G  SP+K T+PFVLKACA I   + GK VH  ++K  FG D++V N L+H+YGSC 
Sbjct: 141 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 199

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L RKVFDEM ER  VSW++MI    R G    A+ LFR+MQ S   PD  TM +VL
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 258

Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  LG+L +G W  +F+ ++    V   V + N+LI+M+ KCG +  A ++F+ M  R
Sbjct: 259 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + SW ++I G A HGR  EA+  F+ M++    V P+ V FVGLL AC+H G V+KGR+
Sbjct: 319 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 378

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  D+ I P +EHYGC+VD++ R+G + EA + +  MP++ + +IWR+L+ ACC +
Sbjct: 379 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 438

Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           G  ++L+E I + +IG +  +ES+       YVLLS +YA   RW     +R++M + G+
Sbjct: 439 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 498

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
           +K PG + IE++   +EF  GD SH Q+K+IY+ L  +  +++  GY+P  S+  L+D  
Sbjct: 499 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 558

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           N+  KE +L  HSE+LAIAF L+  PP TPIRI KNLRVCNDCH  TK ISK++N EI+V
Sbjct: 559 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 618

Query: 465 RDRHRFHHFKD 475
           RDR RFHHFKD
Sbjct: 619 RDRVRFHHFKD 629



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 50/228 (21%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFR 171
           + ++   C+D+  L   K + +F  +        ++ L   ++ + +   DV+ A ++F 
Sbjct: 51  IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107

Query: 172 SMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH---- 225
           S+   +   W ++I   A    R  EA  L+ +MLE G   PD   F  +L AC++    
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167

Query: 226 -------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
                                          CG +D  R+ FD M         +  +  
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 222

Query: 255 MVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300
           M+D L R G    A +  ++M    E +    ++++SAC   G L L 
Sbjct: 223 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLG 270


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/511 (43%), Positives = 330/511 (64%), Gaps = 36/511 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--QFGDDIHVQNTLVHMYGSC 58
           M   G+ P++FT+  +   C+ + + N+GK +H  V K       +I +++ +V MY  C
Sbjct: 203 MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC 262

Query: 59  E-------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGY 87
                                           G I + RK+F+ M ERD +SW+AMI GY
Sbjct: 263 GLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY 322

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-ESFIEKQMVNRS 146
           ++ G  ++A++LF++M+  G+ PDE+T+V VLSAC  LGA ++GK +   +IE  + N++
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQN 382

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
             L  A++DM+AKCG +D AL++FR +  N +T   + S+IAGLA HG G  A+ +F E+
Sbjct: 383 TILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFREL 442

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
           +  G+ PD+V FVG+L AC H GL+++G++ F+SM N +GI P++EHYGCMVD+L R G 
Sbjct: 443 ISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGC 502

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           ++EA++ +QKMP EAN +IWR L+SAC   G +K+ E   ++L+  E  H + YVLLS+I
Sbjct: 503 LEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNI 562

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEM 384
            A   +WE+  ++R+VM+  G++K PG + IEL   I+ FV  DKSH Q KEI  ML +M
Sbjct: 563 LADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDM 622

Query: 385 GRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVC 444
             ++K AGYVP T++V+ DI+EE+KE  ++ HSEKLA+AF L+   P   IRIVKNLR+C
Sbjct: 623 AMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRIC 682

Query: 445 NDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            DCH A K +S+IY REI VRD  RFHHF++
Sbjct: 683 ADCHKAFKLVSEIYGREITVRDTMRFHHFRN 713



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 37/344 (10%)

Query: 1   MLEYGVSP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+  G++P N FT+PF+L +CA +  L  G  VH  ++K  F  D+ V+N L+H+Y S  
Sbjct: 101 MIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLY-SVF 159

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L R +FDE   RD VS++ MI GYA +     A+ LF +MQ SG+ PDE T V + 
Sbjct: 160 GNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALF 219

Query: 120 SACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAK------------------ 159
           S C+ L    VGK + + + K +  ++ ++ L +A++DM+AK                  
Sbjct: 220 SVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279

Query: 160 --------------CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
                         CG+++ A KLF  M+ R ++SWT++I+G +  G+  EA+ LF+EM 
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ PD+V  V +LSAC+  G  D G+  +     +            ++DM  + G +
Sbjct: 340 ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSI 399

Query: 266 KEAHEFIQKMPIEANP-IIWRTLISACCARGELKLAESITKRLI 308
             A E  +++        ++ ++I+     G  + A ++ + LI
Sbjct: 400 DSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI 443



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 8/261 (3%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVL 119
           G++  R +F ++   +   W+ MI GY+R     +AI L+  M   G+ P +  T   +L
Sbjct: 59  GLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLL 118

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           ++C  L +LE G  V S I K      + + NALI +++  G+++ A  LF     R +V
Sbjct: 119 NSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLV 178

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           S+ ++I G A   +   A+ LF EM  +G+ PD+  FV L S CS     + G++ +   
Sbjct: 179 SYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQV 238

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            KN   I   I     +VDM  + G +  A      M    +   W +++      GE+ 
Sbjct: 239 YKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEIN 298

Query: 299 LAESITKRLIGNEPMHESNYV 319
           +A  +         MHE + +
Sbjct: 299 VARKLFNH------MHERDVI 313


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/500 (46%), Positives = 316/500 (63%), Gaps = 31/500 (6%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----------- 55
           +P+++T+  VLKACAG+  +  G+ VH  V K+    ++ V+N+LV +Y           
Sbjct: 124 NPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQK 183

Query: 56  ------------------GSC-EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96
                             G C  G ++  R VFD M E++ VSWS MI GYAR     DA
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADA 243

Query: 97  IDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           I+LFRQMQ  G + P+++T+V+VLSAC  LGAL++GKW+  FI +  +   + L NAL D
Sbjct: 244 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 303

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKCG V +A  +F  M+ R ++SW+ +I GLAM+G   EA   F EM+E G+ P+D++
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+GLL+AC+H GLVDKG EYFD M   +GI PKIEHYGC+VD+L R+GR+ +A   I  M
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 423

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ N I+W  L+  C    + +  E +  R++  +  H  + V L+++YA + R +   
Sbjct: 424 PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAA 483

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
             R  M      K PG + IE++N +YEF  GD SH QS  IY M+ E+  KMK AGY P
Sbjct: 484 SCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKP 543

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            T  V+ +I+EE+KEDAL+ HSEKLA+AF L+ T  GT IRIVKNLRVCNDCH A K IS
Sbjct: 544 KTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIIS 603

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           KI  REIVVRDR RFHHFKD
Sbjct: 604 KIVEREIVVRDRSRFHHFKD 623



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G++PN  T   VL ACA +G L+LGK +H  + + +    + + N L  MY  C G +
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKC-GCV 311

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
              + VF EM ERD +SWS +I G A  G + +A + F +M   G+ P++I+ + +L+AC
Sbjct: 312 LEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC 371

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVS 180
           T  G ++ G ++ +   +   +   +     ++D+ ++ G +D+A  L  SM  +  ++ 
Sbjct: 372 THAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIV 431

Query: 181 WTSVIAG 187
           W +++ G
Sbjct: 432 WGALLGG 438


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/469 (46%), Positives = 316/469 (67%), Gaps = 9/469 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  TYPF+LKA +   ++  G+++H   ++  F   + VQN+L+H+Y +C G  E  
Sbjct: 126 IEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC-GDTESA 184

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF+ M +RD V+  ++I G+A  G  ++A+ LFR+M   GV PD  T+V++LSA  +L
Sbjct: 185 HNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAEL 244

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GALE+G+ V  ++ K  +  +  + N+L+D++AKC  + +          R  VSWTS+I
Sbjct: 245 GALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLI 296

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            GLA++G G EA+ LF EM   G+ P ++ FVG+L ACSHCG++D+G +YF  MK +FGI
Sbjct: 297 VGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGI 356

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +P+IEHYGCMVD+L R+G VK+A+E+IQ MP++ N + WRTL+ AC   G L L E+   
Sbjct: 357 MPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARS 416

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            L+  EP H  +YVLLS++Y    RW     IR  M K G+KK  G +L+EL N +YEF 
Sbjct: 417 HLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFT 476

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            G++SH QS+++Y +L+++   +K  GYVP T+ VL DI EE+KE AL+ HSEK AIAF 
Sbjct: 477 MGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFM 536

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            L T PGT IR++KNLRVC DCH A K ++K+Y+REIV+RDR RFHHF+
Sbjct: 537 RLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFR 585



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            VF  +   +  +W+ M  GYA     + A+  +RQM +S + PD  T   +L A +   
Sbjct: 85  NVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSL 144

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +  G+ + S   +      V + N+L+ ++A CGD + A  +F  M  R +V+  SVI 
Sbjct: 145 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVIN 204

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           G A++GR  EA+ LF EM   GV PD    V LLSA +  G ++ GR
Sbjct: 205 GFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGR 251


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G  SP+K T+PFVLKACA I   + GK VH  ++K  FG D++V N L+H+YGSC 
Sbjct: 132 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 190

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L RKVFDEM ER  VSW++MI    R G    A+ LFR+MQ S   PD  TM +VL
Sbjct: 191 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 249

Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  LG+L +G W  +F+ ++    V   V + N+LI+M+ KCG +  A ++F+ M  R
Sbjct: 250 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 309

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + SW ++I G A HGR  EA+  F+ M++    V P+ V FVGLL AC+H G V+KGR+
Sbjct: 310 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 369

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  D+ I P +EHYGC+VD++ R+G + EA + +  MP++ + +IWR+L+ ACC +
Sbjct: 370 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 429

Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           G  ++L+E I + +IG +  +ES+       YVLLS +YA   RW     +R++M + G+
Sbjct: 430 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 489

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
           +K PG + IE++   +EF  GD SH Q+K+IY+ L  +  +++  GY+P  S+  L+D  
Sbjct: 490 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 549

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           N+  KE +L  HSE+LAIAF L+  PP TPIRI KNLRVCNDCH  TK ISK++N EI+V
Sbjct: 550 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 609

Query: 465 RDRHRFHHFKD 475
           RDR RFHHFKD
Sbjct: 610 RDRVRFHHFKD 620



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 50/228 (21%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFR 171
           + ++   C+D+  L   K + +F  +        ++ L   ++ + +   DV+ A ++F 
Sbjct: 42  IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 98

Query: 172 SMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH---- 225
           S+   +   W ++I   A    R  EA  L+ +MLE G   PD   F  +L AC++    
Sbjct: 99  SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 158

Query: 226 -------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
                                          CG +D  R+ FD M         +  +  
Sbjct: 159 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 213

Query: 255 MVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300
           M+D L R G    A +  ++M    E +    ++++SAC   G L L 
Sbjct: 214 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLG 261


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/471 (46%), Positives = 316/471 (67%), Gaps = 5/471 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GVSP+ FT+PFVLKACA    L  G  +H  + K  F  D++VQN L+H YG C G ++ 
Sbjct: 82  GVSPDHFTFPFVLKACA---RLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCC-GFLDF 137

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACT 123
             K F+EM ERD VSWS+MI  +A+ G   +A+ LF++MQ+ G V PDE+ +++V+SA +
Sbjct: 138 ALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAIS 197

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LG LE+GKW+  FI +  +  +V L  AL+DMF++CG +++++++F  M  R +++WT+
Sbjct: 198 ILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTA 257

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I GLA+HGR  EA+ +F EM   G  PD V F G+L ACSH GLV +G   F+S++N++
Sbjct: 258 LINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+ P  EHYGCMVD+L R+G + EA +F+  MPI  N IIWRTL+ AC     ++LAE +
Sbjct: 318 GMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKV 377

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            +++   +  H+ +YVLLS++Y  + RW +K  +R  M ++ + K PG +LI +++ I+E
Sbjct: 378 KEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHE 437

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV GD +H Q + I E L  M   +K  GY P  S VL DI EE+KE  L  HSEKLA+A
Sbjct: 438 FVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVA 497

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           FALL       IR++KNLR+C+DCH   K+ S ++ REI++RDR+RFHHF 
Sbjct: 498 FALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFS 548



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 19/312 (6%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           ++  L+    S    +   R +FD ++  D+ +++ +I  +A    S        +M ++
Sbjct: 23  LRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMTMA 81

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           GV PD  T   VL AC     L+ G  + S + K   +  V + N LI  +  CG +D A
Sbjct: 82  GVSPDHFTFPFVLKAC---ARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA 138

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH 225
           LK F  M  R +VSW+S+IA  A +G G EA+ALF+ M   G V PD+V  + ++SA S 
Sbjct: 139 LKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISI 198

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            G ++ G+ +     +  G+   +     +VDM  R G ++E+     +M  E N + W 
Sbjct: 199 LGDLELGK-WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWT 256

Query: 286 TLISACCARGELKLAESI----TKRLIGNEPMHES-NYVLLSHIYAKLLR--WEKKTKIR 338
            LI+     G  + AE++      R  G +P H +   VL++  +  L+   W     IR
Sbjct: 257 ALINGLAVHG--RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR 314

Query: 339 EVMDKRGMKKIP 350
              ++ GM+ +P
Sbjct: 315 ---NEYGMEPLP 323


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/475 (46%), Positives = 316/475 (66%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+E G+ P+KF +PF LK+CAG+ DL  GK +H  ++     +D+ V   LV MY  C G
Sbjct: 809  MMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKC-G 867

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             IE  R VFD+M+ RD VSW++MI GYA  G +++ +  F  M+ SGV P+ +++++VL 
Sbjct: 868  DIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLL 927

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC +LGAL  G+W  S++ +      + +  A++DM++KCG +D A  LF    G+ +V 
Sbjct: 928  ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVC 987

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W+++IA   +HG G +A+ LF++M++AGV P  V F  +LSACSH GL+++G+ YF  M 
Sbjct: 988  WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMT 1047

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +F I  K+ +Y CMVD+L R+G++ EA + I+ MP+E +  IW +L+ AC     L LA
Sbjct: 1048 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E I   L   +P+H   +VLLS+IYA   RW +  K+R++M +RG  KI G +L+E DN+
Sbjct: 1108 EKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQ 1167

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            +++F  GD+SH Q +++Y  L+E+   MK  GYVP T  VL DI EE KE AL+ HSE+L
Sbjct: 1168 VHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERL 1227

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIAF L+ T PGT +RI KNLR+C DCH+A K ISKI NR I+VRD HRFH F+D
Sbjct: 1228 AIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFED 1282



 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/404 (34%), Positives = 242/404 (59%), Gaps = 2/404 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E    PN  T    L+ACA   +L  GK +H   +   F  D  V   L+ MY  C  
Sbjct: 298 MIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSC 357

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    +F  + ++D VSW A++ GYA+ G++  ++ +FR M   G+ PD + +V +L+
Sbjct: 358 PDE-AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILA 416

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A ++LG  +    +  ++ +   N +V +  +LI++++KCG +  A+KLF+ M  R +V 
Sbjct: 417 ASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVI 476

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W+S+IA   +HGRG EA+ +F++M++ + V P++V F+ +LSACSH GLV++G + FD M
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            +D+ + P  EH+G MVD+L R G++ +A + I +MPI A P +W  L+ AC     +++
Sbjct: 537 VHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEM 596

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E+  K L   +P H   Y+LLS+IYA   +W+   ++R  + +RG+KK+ G +++E+  
Sbjct: 597 GEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRG 656

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            ++ F+  D+ H  S++IYE+L ++  +M K  Y+P    +L D
Sbjct: 657 GVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 15/298 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIE 63
           G +P+ FT P  LKACAG+  L LGK +HG   K  + G D+ V + LV +Y  C G + 
Sbjct: 98  GEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKC-GQMG 156

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSAC 122
              KVF+E    D+V W++M+ GY +     +A+ LF QM  +  V  D +T+V+V+SAC
Sbjct: 157 EALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSAC 216

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             L  ++ G  V   + ++  +  + L N+L++++AK G    A  LF  M  + ++SW+
Sbjct: 217 AQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWS 276

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-----YFD 237
           ++IA  A +    EA+ LF EM+E    P+ V  V  L AC+    +++G++      + 
Sbjct: 277 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK 336

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             + DF +         ++DM  +     EA +  Q++P + + + W  L+S     G
Sbjct: 337 GFELDFSVST------ALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSGYAQNG 387



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 19/319 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           V+ ACA + ++  G  VHG V++ +F  D+ + N+L+++Y    G  ++   +F +M E+
Sbjct: 212 VVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAK-TGCEKIAANLFSKMPEK 270

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D +SWS MI  YA    + +A++LF +M      P+ +T+V+ L AC     LE GK + 
Sbjct: 271 DVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH 330

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
                +       +  ALIDM+ KC   D+A+ LF+ +  + +VSW ++++G A +G   
Sbjct: 331 KIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAY 390

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG--------REYFDSMKNDFGIIP 247
           +++ +F  ML  G+ PD VA V +L+A S  G+  +         R  F+S  N F    
Sbjct: 391 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNS--NVFVGAS 448

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            IE Y        + G + +A +  + M +  + +IW ++I+A    G    A  I  ++
Sbjct: 449 LIELYS-------KCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQM 500

Query: 308 IGNEPMHESNYVLLSHIYA 326
           + N  +  +N   LS + A
Sbjct: 501 VKNSTVRPNNVTFLSILSA 519



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 5/295 (1%)

Query: 30   KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
            K  H  +  +    D  +      MY S    I+    VF+++    S  W+ MI G+A 
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNR-IDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 90   LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
             G    +++L+ +M   G+ PD+      L +C  L  L+ GK +   +     +  + +
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 150  CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              AL+DM+AKCGD++ A  +F  M  R +VSWTS+I+G A +G   E +  F+ M  +GV
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 210  PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
             P+ V+ + +L AC + G + KG E+F S     G    I     ++DM  + G +  A 
Sbjct: 916  IPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 270  EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLS 322
                +   + + + W  +I++    G  + A  +  +++  G  P H +   +LS
Sbjct: 975  CLFDETAGK-DLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 26/284 (9%)

Query: 27  NLGKSV---HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           N G+SV   H  V K     D      L  +Y  C   ++  RKVFDE    +   W++ 
Sbjct: 15  NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKC-ASLQAARKVFDETPHPNVHLWNST 73

Query: 84  IGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ- 141
           +  Y R     + + LF  M   +G  PD  T+   L AC  L  LE+GK +  F +K  
Sbjct: 74  LRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKND 133

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
            +   + + +AL+++++KCG + +ALK+F        V WTS++ G   +    EA+ALF
Sbjct: 134 EIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 202 EEMLEAG-VPPDDVAFVGLLSACSHCGLVDKG--------REYFDSMKNDFGIIPKIEHY 252
            +M+    V  D V  V ++SAC+    V  G        R  FD      G +P +   
Sbjct: 194 SQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD------GDLPLVN-- 245

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             ++++  ++G  K A     KMP E + I W T+I AC A  E
Sbjct: 246 -SLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-ACYANNE 286


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/475 (46%), Positives = 314/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V PN  T   ++ +C  +G + LGK +H  +L+  FG  + +   LV MYG C G
Sbjct: 223 MIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKC-G 281

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD M  +D ++W+AMI  YA+      A  LF QM+ +GV P+E+TMV++LS
Sbjct: 282 EIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLS 341

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C   GAL++GKW  ++I+KQ V   V L  ALIDM+AKCGD+  A +LF     R I +
Sbjct: 342 LCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICT 401

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  ++AG  MHG G +A+ LF EM   GV P+D+ F+G L ACSH GLV +G+  F+ M 
Sbjct: 402 WNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMI 461

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +DFG++PK+EHYGCMVD+L R+G + EA++ I+ MP+  N  IW  +++AC       + 
Sbjct: 462 HDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMG 521

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + L+  EP +    VL+S+IYA   RW     +R+ +   G+KK PG + IE++  
Sbjct: 522 ELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGL 581

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD +H   ++I EML EM +K+K+AGY+P TS VL +I+EE+KE ALN HSEKL
Sbjct: 582 VHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKL 641

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T PGTPIR+VKNLR+C+DCH+ TK +SKIY R I+VRDR+RFHHF++
Sbjct: 642 AMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFRE 696



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 159/311 (51%), Gaps = 25/311 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  +  + F  P VLKAC+ I    +GK +HG  +K     D+ V N L+ MY  C G
Sbjct: 100 MRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSEC-G 158

Query: 61  GIELGRKVFDEMSERDSVSWS----------------------AMIGGYARLGLSTDAID 98
            +   R +FD+MSERD VSWS                      AMI GY R     +   
Sbjct: 159 SLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGER 218

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           LF +M    V P++ITM++++ +C  +GA+++GK + ++I +     S+ L  AL+DM+ 
Sbjct: 219 LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           KCG++  A  +F SM  + +++WT++I+  A       A  LF +M + GV P+++  V 
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           LLS C+  G +D G+ +F +  +  G+   +     ++DM  + G +  A     +  I+
Sbjct: 339 LLSLCAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AID 396

Query: 279 ANPIIWRTLIS 289
            +   W  +++
Sbjct: 397 RDICTWNVMMA 407



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 26/218 (11%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A++ +  M+   +  D   + +VL AC+ +    +GK +  F  K  +   V + NAL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 156 MFAKCGDVDKA----------------------LKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           M+++CG +  A                      + LF   + R+IVSWT++IAG      
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEHY 252
             E   LF  M+E  V P+D+  + L+ +C   G V  G R +   ++N FG+   +   
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM--SLALA 270

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             +VDM  + G ++ A      M    + + W  +ISA
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/505 (44%), Positives = 319/505 (63%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G +P   TY  VL AC  G  D+ LG  VHG V+      D+ V+N LV MY  C 
Sbjct: 113 MARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECA 172

Query: 60  ------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                         G ++  R +FD M ERD+VSW+AMI GY  
Sbjct: 173 DMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVW 232

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                +A+++FR+MQ S V  DE TMV+V++AC  LGALE+G+WV  ++ +Q +     +
Sbjct: 233 AARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFV 292

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NALIDM++KCG +++AL +F+ M+ R   +WT++I GLA++G   EA+ +F  M+    
Sbjct: 293 GNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSE 352

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+V F+G+L+AC+H GLVDKGRE+F SM   + I P + HYGC++D+L R+G++ EA 
Sbjct: 353 TPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEAL 412

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I +MP+  N  IW TL++AC   G  ++ E + +RL+  +P +   Y+LLS+IYAK  
Sbjct: 413 DTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCN 472

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RWE   ++R  + ++G+KK PG +LIE+D  I+EFV GD+SH  SKEIY  L+ +   + 
Sbjct: 473 RWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLN 532

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P  +EV +++ E++K+  L  HSEKLAIAFALL + P T IRIVKNLR+C DCH+
Sbjct: 533 NVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHN 592

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
           A K IS++Y RE+VVRDR RFHHF+
Sbjct: 593 AIKLISRLYGREVVVRDRTRFHHFR 617



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 157/346 (45%), Gaps = 45/346 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACA----GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           ML  G  P+ +T+P +LKA A    G G     ++VH  V++   G + HV ++LV  Y 
Sbjct: 10  MLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYT 69

Query: 57  SCEGGIELGRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           +   G      V     E D+ V+W+A+I G+ R G   ++   F  M  +G  P  +T 
Sbjct: 70  AGGDGAAARALV----GECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTY 125

Query: 116 VTVLSACTDLGALEV--GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           V+VLSAC   G  +V  G  V   +    V   + + NAL+DM+A+C D+  A K+F  M
Sbjct: 126 VSVLSACGK-GTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGM 184

Query: 174 NGRTIVSWTSVIAGLAMHG-------------------------------RGLEAVALFE 202
             R++VSWTS+++GLA  G                               R  EA+ +F 
Sbjct: 185 QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFR 244

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           EM  + V  D+   V +++AC+  G ++ G E+     +  GI         ++DM  + 
Sbjct: 245 EMQYSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKC 303

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           G ++ A +  + M    +   W  +I      G  + A  +  R+I
Sbjct: 304 GSIERALDVFKGMH-HRDKFTWTAIILGLAVNGYEEEAIEMFHRMI 348



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 118/306 (38%), Gaps = 51/306 (16%)

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDL----GALEVGKWVESFIEKQMVNRSVGLC 150
           DA+  + +M   G  PD  T   +L A        G+    + V + + +  + R+  + 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           ++L+  +   GD   A  L    +  T V+W ++I+G    GR  E+   F +M  AG  
Sbjct: 62  SSLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 211 PDDVAFVGLLSAC------------------------------------SHCGLVDKGRE 234
           P  V +V +LSAC                                    + C  +    +
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            FD M+     +  +  +  ++  L R G+V EA +   +MP E + + W  +I      
Sbjct: 180 VFDGMQ-----VRSVVSWTSLLSGLARLGQVDEARDLFDRMP-ERDTVSWTAMIDGYVWA 233

Query: 295 GELKLAESITKRL-IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK--KIPG 351
              + A  + + +   N    E   V +    A+L   E    +R  M ++G+K     G
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 293

Query: 352 STLIEL 357
           + LI++
Sbjct: 294 NALIDM 299


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/477 (45%), Positives = 323/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   VL  C   G++ LG+ +H  +    FG ++ + N L+ +Y  C G
Sbjct: 201 MMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKC-G 259

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +  +D +SW+ +IGGYA +    +A+ +F++M   G  P+++TM+++L 
Sbjct: 260 EMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILP 319

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  +  +  L  +LIDM+AKCG+++ A ++F ++  +++
Sbjct: 320 ACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSL 379

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            S  ++I G AMHGR   A  L   M + G+ PDD+ FVGLLSACSH GL D GR+ F S
Sbjct: 380 SSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKS 439

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ I PK+EHYGCM+D+L RSG  KEA E I  M +E + +IW +L+ AC     L+
Sbjct: 440 MTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLE 499

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E I ++L+  EP +  +YVLLS+IYA   RW+   ++R +++ +G+KK+PG + IE+D
Sbjct: 500 LGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEID 559

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H Q+KEIY+ML+E+   + + G+V  TSEVL ++ EE KE AL+ HSE
Sbjct: 560 SMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSE 619

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT +RIVKNLRVC +CH ATK ISKIY REI+ RDR RFHHFKD
Sbjct: 620 KLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKD 676



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 166/303 (54%), Gaps = 35/303 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G+SPN +T+PF+ K+CA       GK +H  +LK+    D+HV  +L+ MY     
Sbjct: 69  MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGI 128

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G ++  +K+FDE+  +D VSW+AMI GYA +
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF +M    V PDE TM TVLS CT  G +E+G+ + S+I+      ++ L 
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV 248

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG++++A  LF  +  + ++SW ++I G A      EA+ +F+EML+ G  
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308

Query: 211 PDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D  K   GII        ++DM  + G ++ 
Sbjct: 309 PNDVTMLSILPACAHLGAIDIGRWIHVYID--KKLKGIITNTSLQTSLIDMYAKCGNIEA 366

Query: 268 AHE 270
           A++
Sbjct: 367 ANQ 369



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF  + E + +SW+ MI G+A       A++L+  M   G+ P+  T   +  
Sbjct: 27  GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-------------------- 160
           +C    A + GK + + I K  +   + +  +LI M+A+                     
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 161 -----------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
                      G++DKA K+F  +  + +VSW ++I+G A  GR  EA+ LF EM++  V
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+     +LS C+H G V+ GR+   S  ++ G    ++    ++D+  + G ++ AH
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQ-IHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAH 265

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +  + + I W TLI
Sbjct: 266 GLFEGLQYK-DVISWNTLI 283


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/476 (46%), Positives = 323/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+ FTYP +LKACA +  +  G  VH  +LK    +D+ VQN+L+ MYG C G
Sbjct: 122 MAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            I +   VF++M+ER   SWSA+I  +A LG+ +D + L   M   G    +E  +V+VL
Sbjct: 181 EIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVL 240

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LGAL++G+ V  F+ + +   +V +  +LI+M+ KCG + K + LF+ M  +  +
Sbjct: 241 SACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKL 300

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S++ +I+GLAMHG G E + +F EMLE G+ PDD+ +VG+L+ACSH GLV +G + F+ M
Sbjct: 301 SYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRM 360

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K + GI P I+HYGCMVD++ R+G++ EA E I+ MP+E N ++WR+L+SA      L+ 
Sbjct: 361 KLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQA 420

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+L   +    S+YV+LS++YA+  RWE   K R  M  +G+ + PG +L+E+  
Sbjct: 421 GEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKR 480

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ FV  D  H QS+ +YEML +M  ++K  GY P T++VL D++EE+K+  L+ HS+K
Sbjct: 481 KMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQK 540

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA+AL+ T  G+PIRIV+NLR+CNDCH+ TK IS I++REI VRDRHRFHHFKD
Sbjct: 541 LAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKD 596



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 9/283 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +LK C+ + +    K  H  +LK   FGD     N +     S  G ++    +F +M E
Sbjct: 37  LLKKCSNMEEF---KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDE 93

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
             S  ++ M+ G+ +   + +A+  +++M   GV PD  T  T+L AC  L A+E G  V
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQV 153

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            + I K  +   V + N+LI M+ KCG++     +F  MN R++ SW+++I   A  G  
Sbjct: 154 HAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMW 213

Query: 195 LEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHY 252
            + + L  +M   G    ++   V +LSAC+H G +D GR      ++N  G+   +E  
Sbjct: 214 SDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE-- 271

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +++M  + G + +     QKM  + N + +  +IS     G
Sbjct: 272 TSLIEMYLKCGSLYKGMCLFQKMA-KKNKLSYSVMISGLAMHG 313


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/466 (46%), Positives = 318/466 (68%), Gaps = 2/466 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT  FVLKACA +     G  VH  VLK  FG  + VQ +LV+ YG CE  I   RK
Sbjct: 90  PNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEE-IGFARK 148

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+EM  R+ V+W+AMI G+AR+G   +A++LFR+MQ +G+ PD +T+V+V+SAC   GA
Sbjct: 149 VFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGA 208

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L++G W+ ++IEK  V   + L  AL+DM+AKCG +++A ++F  M  +   +W+S+I G
Sbjct: 209 LDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMG 268

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A HG   +A+  F++MLE  V PD V F+ +LSAC+H GLV +GR ++ S+  +FGI P
Sbjct: 269 FAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFW-SLMLEFGIEP 327

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +EHYGC VD+LCRSG V+EA+     M I  N   WR+L+  C  +  L L E + + L
Sbjct: 328 SVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYL 387

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +  EP++  NY+++S++Y+ L +WEK +++R+VM ++ +K +PG + IE+D  ++EFV G
Sbjct: 388 LELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMG 447

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           D+SH + K + E ++EM  +++ +GY P+ S+VL  + +E+KE AL++HSE+ AIA+ LL
Sbjct: 448 DQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLL 507

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           KT     IR+VKNLRVC DCH   K ISK+Y REI+VRDR RFH F
Sbjct: 508 KTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKF 553



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 140/267 (52%), Gaps = 6/267 (2%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGV-CPDEITMVT 117
           G I   R VF ++   +  SW+++I GY+++  LS + I LF+++  +G   P+  T+  
Sbjct: 38  GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL AC  + A   G  V S + K     S+ +  +L++ + KC ++  A K+F  M  R 
Sbjct: 98  VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+WT++I+G A  G   EA+ LF EM +AG+ PD +  V ++SAC+  G +D G  +  
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGY-WLH 216

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +    + ++  +E    +VDM  + G ++ A +    MP++ +   W ++I      G  
Sbjct: 217 AYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVK-DTTAWSSMIMGFAYHGLA 275

Query: 298 KLAESITKRLIGNE--PMHESNYVLLS 322
           + A    ++++  E  P H +   +LS
Sbjct: 276 QDAIDAFQQMLETEVTPDHVTFLAVLS 302



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 2/188 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  T   V+ ACA  G L++G  +H  + K+    D+ +   LV MY  C G
Sbjct: 184 MQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKC-G 242

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  ++VF  M  +D+ +WS+MI G+A  GL+ DAID F+QM  + V PD +T + VLS
Sbjct: 243 CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLS 302

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC   G +  G+   S + +  +  SV      +D+  + G V++A ++  +M       
Sbjct: 303 ACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAA 362

Query: 180 SWTSVIAG 187
           +W S++ G
Sbjct: 363 TWRSLLMG 370


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/467 (46%), Positives = 317/467 (67%), Gaps = 3/467 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT  F LKACA +     G+ +H   L+       +VQ  L+++Y  CE  + L R 
Sbjct: 124 PNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQ-VALART 182

Query: 68  VFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VFD M+ +++ V+WSAM+ GY+R+G+  +A+ LFR+MQ  GV PDE+TMV+V+SAC   G
Sbjct: 183 VFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAG 242

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL++GKWV ++I+++ +   + L  ALIDM+AKCG +++A  +F +M  +   +W+++I 
Sbjct: 243 ALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIV 302

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G A+HG   +A+ LF  MLE  V P++V F+G+LSAC+H GLV+ GR Y+  M+N  GI 
Sbjct: 303 GFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIK 361

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E+YGCMVD+LCRSG + +A+ F+  MP+  N +IWRTL+ AC +   + +AES TKR
Sbjct: 362 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKR 421

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NYVLLS++YA   +W++ + +R  M  + +  I G + IE++  ++EFV 
Sbjct: 422 LLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVV 481

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
            D SH + +EI  +L EM  ++++AG+ P T+ VL D+ EE+KE AL +HSE+LAIA+ L
Sbjct: 482 SDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGL 541

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LKT     IR+VKNLR C DCH   K ISK YNREIVVRDR RFH F
Sbjct: 542 LKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKF 588



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 5/185 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P++ T   V+ ACA  G L+LGK VH  + +     D+ +   L+ MY  C G
Sbjct: 219 MQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKC-G 277

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R VFD M E+D+ +WSAMI G+A  GL  DA+ LF +M    V P+ +T + VLS
Sbjct: 278 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 337

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G +E G+   S ++   +  S+     ++D+  + G +D A      M     VS
Sbjct: 338 ACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP----VS 393

Query: 181 WTSVI 185
             SVI
Sbjct: 394 PNSVI 398



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTD 124
           R +FD++ +  +  ++++I      G S  A+ ++R+M  +G   P+  T+   L AC  
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTS 183
           + A   G+ + +   +Q +  S  +   L++++AKC  V  A  +F  M G + +V+W++
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +++G +  G   EA+ LF EM   GV PD+V  V ++SAC+  G +D G+ +  +  +  
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGK-WVHAYIDRK 257

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           GI   +E    ++DM  + G ++ A      M +E +   W  +I      G ++ A  +
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 316

Query: 304 TKRLI 308
             R++
Sbjct: 317 FSRML 321


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/467 (46%), Positives = 317/467 (67%), Gaps = 3/467 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT  F LKACA +     G+ +H   L+       +VQ  L+++Y  CE  + L R 
Sbjct: 173 PNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQ-VALART 231

Query: 68  VFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VFD M+ +++ V+WSAM+ GY+R+G+  +A+ LFR+MQ  GV PDE+TMV+V+SAC   G
Sbjct: 232 VFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAG 291

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL++GKWV ++I+++ +   + L  ALIDM+AKCG +++A  +F +M  +   +W+++I 
Sbjct: 292 ALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIV 351

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G A+HG   +A+ LF  MLE  V P++V F+G+LSAC+H GLV+ GR Y+  M+N  GI 
Sbjct: 352 GFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIK 410

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E+YGCMVD+LCRSG + +A+ F+  MP+  N +IWRTL+ AC +   + +AES TKR
Sbjct: 411 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKR 470

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NYVLLS++YA   +W++ + +R  M  + +  I G + IE++  ++EFV 
Sbjct: 471 LLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVV 530

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
            D SH + +EI  +L EM  ++++AG+ P T+ VL D+ EE+KE AL +HSE+LAIA+ L
Sbjct: 531 SDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGL 590

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LKT     IR+VKNLR C DCH   K ISK YNREIVVRDR RFH F
Sbjct: 591 LKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKF 637



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 5/185 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P++ T   V+ ACA  G L+LGK VH  + +     D+ +   L+ MY  C G
Sbjct: 268 MQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKC-G 326

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R VFD M E+D+ +WSAMI G+A  GL  DA+ LF +M    V P+ +T + VLS
Sbjct: 327 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 386

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G +E G+   S ++   +  S+     ++D+  + G +D A      M     VS
Sbjct: 387 ACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP----VS 442

Query: 181 WTSVI 185
             SVI
Sbjct: 443 PNSVI 447



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTD 124
           R +FD++ +  +  ++++I      G S  A+ ++R+M  +G   P+  T+   L AC  
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTS 183
           + A   G+ + +   +Q +  S  +   L++++AKC  V  A  +F  M G + +V+W++
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +++G +  G   EA+ LF EM   GV PD+V  V ++SAC+  G +D G+ +  +  +  
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGK-WVHAYIDRK 306

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           GI   +E    ++DM  + G ++ A      M +E +   W  +I      G ++ A  +
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALGL 365

Query: 304 TKRLI 308
             R++
Sbjct: 366 FSRML 370


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 320/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G+ P+ +T+  +LKACA    L  G  +H   +K     +I++  TL++MY  C  
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFDEM +   VS++A+I GYAR     +A+ LFR++Q S + P ++TM++V+ 
Sbjct: 181 -MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIM 239

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGAL++GKW+  +++K+  ++ V +  ALIDMFAKCG +  A+ +F  M  R   +
Sbjct: 240 SCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQA 299

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I   A HG GL+A+++FEEM   GV PD++ F+GLL ACSH GLV++GR YF SM 
Sbjct: 300 WSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS 359

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P I+HYGCMVD+L R+G + EA+ F+ K+ I+A PI+WRTL+SAC   G +++A
Sbjct: 360 KTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMA 419

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R+   +  H  +YV+LS++YA++ RWE    +R++M  RG+ K+PG + +E++N 
Sbjct: 420 KRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNV 479

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD  H  S E+   LDE+ +++K  GYVP TS V   D+ EE KE  L  HSEK
Sbjct: 480 VHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEK 539

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL TPPGT IR+ KNLR+C DCH+A K IS I+ R+IV+RD  RFH F+D
Sbjct: 540 LAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFED 595



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 137/283 (48%), Gaps = 7/283 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--YGSCEGGIELGRKVFDEMS 73
           +L  C  + +L   K +    +K     DI V   L++          ++    +FD++ 
Sbjct: 35  LLSKCTSLNEL---KQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQIL 91

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           ++D + ++ M  GYAR      A  LF ++  SG+ PD+ T  ++L AC    AL  G  
Sbjct: 92  DKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMG 151

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +  F  K  +N ++ +C  LI+M+A+C D++ A  +F  M    IVS+ ++I G A   +
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             EA++LF E+  + + P DV  + ++ +C+  G +D G+   + +K   G    ++   
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK-GFDKYVKVNT 270

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            ++DM  + G + +A    + M +  +   W  +I A    G+
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFATHGD 312


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/477 (46%), Positives = 323/477 (67%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA  G + LG+ +H  +    FG +I + N L+ +Y  C G
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC-G 246

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  ++++D +SW+ +IGG+  + L  +A+ LF++M  SG  P+++TM++VL 
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I K++  V  +  L  +LIDM+AKCGD++ A ++F SM  R++
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 366

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHG+   A  LF +M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRS 426

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ I PK+EHYGCM+D+L   G  KEA E I+ MP+E + +IW +L+ AC     ++
Sbjct: 427 MSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 486

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW++  KIR +++ +G+KK PG + IE+D
Sbjct: 487 LGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   M++ G+VP TSEVL ++ EE KE AL  HSE
Sbjct: 547 SVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSE 606

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR R H  KD
Sbjct: 607 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKD 663



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 32/341 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G+ PN +++PF+LK+CA    L  G+ +HG VLK  +  D++V  +L+ MY     
Sbjct: 56  MISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGR 115

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G I   RK+FDE+S +D VSW+AMI GY   
Sbjct: 116 LEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVET 175

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++L++ M  + V PDE TMVTV+SAC   G++E+G+ + S+IE      ++ + 
Sbjct: 176 CNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIV 235

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N LID+++KCG+V+ A  LF+ +  + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 236 NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKIEHYGCMVDMLCRSGRVKEAH 269
           P+DV  + +L AC+H G +D GR     +     G+         ++DM  + G ++ A 
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           +    M +  +   W  +I      G+   A  +  ++  N
Sbjct: 356 QVFDSM-LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKN 395



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     +F+ + E + + W+ M  G+A    S  A+ L+  M   G+ P+  +   +L 
Sbjct: 14  GLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    AL  G+ +   + K   +  + +  +LI M+A+ G ++ A K+F   + R +VS
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 181 WTSVIAGLAMHG-----RGL--------------------------EAVALFEEMLEAGV 209
           +T++I G A  G     R L                          EA+ L+++M++  V
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+  G ++ GR+   S   D G    I+    ++D+  + G V+ A 
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 270 EFIQKMPIEANPIIWRTLI 288
              Q +  + + I W TLI
Sbjct: 253 GLFQGLA-KKDVISWNTLI 270


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/477 (46%), Positives = 325/477 (68%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA  G + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC-G 315

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +  +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F S+  +++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   +  LF  M + G+ PDD+ FVGLLSACSH G++D GR  F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ + PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +  K R +++ +GMKK+PG + IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   ++KAG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSE 675

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 676 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M+  G+ PN +T+PFVLK+CA       G+ +HG VLK     D++V  +L+ MY   G 
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 58  CE---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
            E                           G IE  +K+FDE+  +D VSW+AMI GYA  
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF+ M  + V PDE TMVTV+SAC   G++E+G+ V  +I+      ++ + 
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+++ A  LF  +  + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYID--KRLKGVTNASSLRTSLIDMYAKCGDIEA 422

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
           AH+    + +  +   W  +I      G    +  +  R+  IG +P
Sbjct: 423 AHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF  + E + + W+ M  G+A       A+ L+  M   G+ P+  T   VL 
Sbjct: 83  GLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLK 142

Query: 121 ACTDLGALEVGKWVESFIEK-------------------------------QMVNRSVGL 149
           +C    A + G+ +   + K                               +  +R V  
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI  +A  G ++ A KLF  +  + +VSW ++I+G A  G   EA+ LF++M++  V
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+  G ++ GR+    + +D G    ++    ++D+  + G ++ A 
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWI-DDHGFGSNLKIVNALIDLYSKCGELETAC 321

Query: 270 EFIQKMPIEANPIIWRTLI 288
              +++P + + I W TLI
Sbjct: 322 GLFERLPYK-DVISWNTLI 339


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 325/476 (68%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE  + P+ +T+P +LKACA    L  G+ +H   +K    D+++V  TL++MY  CE 
Sbjct: 122 ILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECED 181

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD + E   V ++AMI GYAR     +A+ LFR+MQ   + P+EIT+++VLS
Sbjct: 182 -VDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLS 240

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LG+L++GKW+  + +K    + V +  ALIDMFAKCG +D A+ +F +M  +   +
Sbjct: 241 SCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQA 300

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I   A HG+   ++ +FE M    V PD++ F+GLL+ACSH GLV++GREYF  M 
Sbjct: 301 WSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMV 360

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++FGI+P I+HYG MVD+L R+G +++A+EFI K+PI   P++WR L++AC +   L+LA
Sbjct: 361 HEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELA 420

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +++R++  +  H  +YV+LS++YA+  +WE    +R+VM  R   K+PG + IE++N 
Sbjct: 421 EKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNV 480

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD     + +++  LDEM +++K AGYVP TS V+  D+ +++KE  L  HSEK
Sbjct: 481 VHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEK 540

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LL TPPGT IR+VKNLRVC DCHSA K IS I+ R++V+RD  RFHHF+D
Sbjct: 541 LAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFED 596



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 2/238 (0%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           E  +   R +FD MSE D V ++++  GY+R     +  +LF ++    + PD  T  ++
Sbjct: 78  ESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSL 137

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC    ALE G+ +     K  V+ +V +C  LI+M+ +C DVD A  +F  +    +
Sbjct: 138 LKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCV 197

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V + ++I G A   R  EA++LF EM    + P+++  + +LS+C+  G +D G+ +   
Sbjct: 198 VCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGK-WIHE 256

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                G    ++    ++DM  + G + +A    + M  + +   W  +I A    G+
Sbjct: 257 YAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYK-DTQAWSAMIVAYANHGQ 313


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/472 (44%), Positives = 329/472 (69%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ +T+  +LKACA +  L  GK +H   +K   GD+++V  TL++MY +C   ++ 
Sbjct: 130 GLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTAC-NDVDA 188

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD++ E   V+++A+I   AR     +A+ LFR++Q SG+ P ++TM+  LS+C  
Sbjct: 189 ARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCAL 248

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL++G+W+  +++K   ++ V +  ALIDM+AKCG +D A+ +F+ M  R   +W+++
Sbjct: 249 LGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAM 308

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I   A HG G +A+++  EM +A V PD++ F+G+L ACSH GLV++G EYF SM +++G
Sbjct: 309 IVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYG 368

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P I+HYGCM+D+L R+GR++EA +FI ++PI+  PI+WRTL+S+C + G +++A+ + 
Sbjct: 369 IVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVI 428

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           +R+   +  H  +YV+LS++ A+  RW+    +R++M  +G  K+PG + IE++N ++EF
Sbjct: 429 QRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEF 488

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL-DINEEDKEDALNKHSEKLAIA 423
             GD  H  S  ++  LDE+ +++K AGYVP TS V   DI +E+KE  L  HSEKLAI 
Sbjct: 489 FSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAIT 548

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + LL TPPGT IR+VKNLRVC DCH+A KFIS I+ R+I++RD  RFHHFKD
Sbjct: 549 YGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKD 600



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 2/248 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++   ++FD++ + D V ++ M  GYAR      AI L  Q+  SG+ PD+ T  ++L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L ALE GK +     K  V  ++ +C  LI+M+  C DVD A ++F  +    +V
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVV 202

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           ++ ++I   A + R  EA+ALF E+ E+G+ P DV  +  LS+C+  G +D GR   + +
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYV 262

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K + G    ++    ++DM  + G + +A    + MP   +   W  +I A    G    
Sbjct: 263 KKN-GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMP-RRDTQAWSAMIVAYATHGHGSQ 320

Query: 300 AESITKRL 307
           A S+ + +
Sbjct: 321 AISMLREM 328



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P   T    L +CA +G L+LG+ +H  V K  F   + V   L+ MY  C G +
Sbjct: 229 ESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKC-GSL 287

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +    VF +M  RD+ +WSAMI  YA  G  + AI + R+M+ + V PDEIT + +L AC
Sbjct: 288 DDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYAC 347

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVS 180
           +  G +E G ++  S   +  +  S+     +ID+  + G +++A K    +  + T + 
Sbjct: 348 SHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPIL 407

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLE 206
           W ++++  + HG    A  + + + E
Sbjct: 408 WRTLLSSCSSHGNVEMAKLVIQRIFE 433



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK---CGDVDKA 166
           P   ++++++  CT L  L   K ++++  K   N    L   LI+          +D A
Sbjct: 33  PPSSSILSLIPKCTSLREL---KQIQAYTIKTHQNNPTVL-TKLINFCTSNPTIASMDHA 88

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            ++F  +    IV + ++  G A     L A+ L  ++L +G+ PDD  F  LL AC+  
Sbjct: 89  HRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARL 148

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
             +++G++    +    G+   +     +++M      V  A     K+  E   + +  
Sbjct: 149 KALEEGKQ-LHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG-EPCVVAYNA 206

Query: 287 LISAC 291
           +I++C
Sbjct: 207 IITSC 211


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/505 (44%), Positives = 322/505 (63%), Gaps = 34/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  GV PN FT+  VLK+C+    L  GK +H   +K   G D++V+  LV +Y     
Sbjct: 136 MLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGD 191

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     S  G ++  R +F+ M ERD V W+ MIGGYA+ 
Sbjct: 192 VVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQS 251

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G+  +++ LFR+M ++   P+E+T++ VLSAC  LGALE G+W+ S+IE + +  +V + 
Sbjct: 252 GVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVG 311

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            ALIDM++KCG ++ A  +F  +  + +V+W S+I G AMHG    A+ LFEEM E G  
Sbjct: 312 TALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHK 371

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P D+ F+G+LSAC H GLV++GR +F  M++ +GI PKIEHYGCMV++L R+G ++EA+ 
Sbjct: 372 PTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYG 431

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ M I A+P++W TL+  C     +KL E I K L+  +  +   YVLLS++YA    
Sbjct: 432 LVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGN 491

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE   K+R +M + G++K  G + IE+DN+++EFV G++ H +SKEIY ML+E+   +K 
Sbjct: 492 WEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKA 551

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P T  VL D+ EE KE +L  HSEKLAIAF L+ T PGT ++IVKNLRVC+DCH+ 
Sbjct: 552 RGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTV 611

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K IS+I  R+IV+RDR+RFHHF+D
Sbjct: 612 MKMISEITGRKIVMRDRNRFHHFED 636



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 20/154 (12%)

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           +A  G +D ++ +F + +   + S++++I           A   + +ML  GV P+   F
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 217 VGLLSACS-------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
             +L +CS       HC  +  G      + +D  +         +VD+  R G V  A 
Sbjct: 149 SSVLKSCSLESGKVLHCQAIKLG------LGSDLYVRTG------LVDVYARGGDVVCAR 196

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           +   KMP E + +   T+++     GEL  A S+
Sbjct: 197 QLFDKMP-ERSLVSLTTMLTCYSKMGELDKARSL 229


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/476 (46%), Positives = 323/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+ FTYP +LKACA +  +  G  VH  +LK    +D+ VQN+L+ MYG C G
Sbjct: 79  MAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKC-G 137

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            I +   VF++M+ER   SWSA+I  +A LG+ +D + L   M   G    +E  +V+VL
Sbjct: 138 EIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVL 197

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LGAL++G+ V  F+ + +   +V +  +LI+M+ KCG + K + LF+ M  +  +
Sbjct: 198 SACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKL 257

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S++ +I+GLAMHG G E + +F EMLE G+ PDD+ +VG+L+ACSH GLV +G + F+ M
Sbjct: 258 SYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRM 317

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K + GI P I+HYGCMVD++ R+G++ EA E I+ MP+E N ++WR+L+SA      L+ 
Sbjct: 318 KLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQA 377

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+L   +    S+YV+LS++YA+  RWE   + R  M  +G+ + PG +L+E+  
Sbjct: 378 GEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKR 437

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ FV  D  H QS+ +YEML +M  ++K  GY P T++VL D++EE+K+  L+ HS+K
Sbjct: 438 KMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQK 497

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA+AL+ T  G+P+RIV+NLR+CNDCH+ TK IS I++REI VRDRHRFHHFKD
Sbjct: 498 LAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKD 553



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 6/269 (2%)

Query: 30  KSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K  H  +LK   F D     N +     S  G ++    +F +M E  S  ++ M+ G+ 
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           +   + +A+  +++M   GV PD  T  T+L AC  L A+E G  V + I K  +   V 
Sbjct: 65  KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 124

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + N+LI M+ KCG++     +F  MN R++ SW+++I   A  G   + + L  +M   G
Sbjct: 125 VQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEG 184

Query: 209 V-PPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
               ++   V +LSAC+H G +D GR      ++N  G+   +E    +++M  + G + 
Sbjct: 185 YWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE--TSLIEMYLKCGXLY 242

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARG 295
           +     QKM  + N + +  +IS     G
Sbjct: 243 KGMCLFQKMA-KKNKLSYSVMISGLAMHG 270


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/512 (45%), Positives = 329/512 (64%), Gaps = 37/512 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  + VSP+  T+PF+L +      L LG+  H  +L F    D  V+ +L++MY SC  
Sbjct: 53  MRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGD 112

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I+  RK+FDEM ER+ +SWS +I GY   
Sbjct: 113 LRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMC 172

Query: 91  GLSTDAIDLFRQMQI-----SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G   +A+DLFR+MQ+     + V P+E TM TVLSAC  LGALE GKWV ++I+K  V  
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEI 232

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV-SWTSVIAGLAMHGRGLEAVALFEEM 204
            + L  ALIDM+AKCG +++A ++F ++  +  V +++++I  LAM+G   E   LF EM
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEM 292

Query: 205 LEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
             +  + P+ V FVG+L AC H GL+++G+ YF  M  +FGI P I+HYGCMVD+  RSG
Sbjct: 293 TTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSG 352

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            +KEA  FI  MP+E + +IW +L+S     G++K  E   KRLI  +PM+   YVLLS+
Sbjct: 353 LIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSN 412

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +YAK  RW +   IR  M+ +G+ K+PG + +E++  ++EFV GD+S  +S+ IY MLDE
Sbjct: 413 VYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDE 472

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           + +++++AGYV  T EVLLD+NE+DKE AL+ HSEKLAIAF L+KT PGTP+RI+KNLR+
Sbjct: 473 IMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRI 532

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH   K ISK+++REIVVRD +RFHHF+D
Sbjct: 533 CGDCHLVMKMISKLFSREIVVRDCNRFHHFRD 564


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/480 (46%), Positives = 323/480 (67%), Gaps = 6/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V P++ T   V+ ACA    + LG+ VH  +    F  ++ + N L+ +Y S  G
Sbjct: 213 MMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLY-SKFG 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++FD +  +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 272 EVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 331

Query: 121 ACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGR 176
           AC  LGA+++G+W+  +I K++   V     L  +LIDM+AKCGD+D A ++F  SM+ R
Sbjct: 332 ACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNR 391

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           ++ +W ++I+G AMHGR   A  +F  M   G+ PDD+ FVGLLSACSH G++D GR  F
Sbjct: 392 SLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIF 451

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            SM   + I PK+EHYGCM+D+L  SG  KEA E I  MP+E + +IW +L+ AC   G 
Sbjct: 452 RSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 511

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM-KKIPGSTLI 355
           L+L ES  K+LI  EP +  +YVLLS+IYA   RW +  KIR +++ +GM KK+PG + I
Sbjct: 512 LELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSI 571

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E+D+ ++EF+ GDK H Q++EIY ML+EM   +++AG+VP TSEVL ++ EE +E AL  
Sbjct: 572 EIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRH 631

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAF L+ T PGT + I+KNLRVC +CH ATK ISKIY REI+ RDR RF HF+D
Sbjct: 632 HSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRD 691



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 175/347 (50%), Gaps = 35/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--- 57
           M+  G+ P+ +T+PF+LK+CA       G+ +HG VLK  F  DI+V  +L+ MY     
Sbjct: 80  MISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGR 139

Query: 58  ---------------------------CEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G IE  +K+FDE+  +D VSW+AMI GY   
Sbjct: 140 LEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVET 199

Query: 91  GLSTDAIDLFRQ-MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G   +A++LF++ M ++ V PDE TMVTV+SAC    ++E+G+ V S+I       ++ +
Sbjct: 200 GNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKI 259

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NALID+++K G+V+ A +LF  +  + ++SW ++I G        EA+ LF+EML +G 
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKIEHY-GCMVDMLCRSGRVKE 267
            P+DV  + +L AC+H G +D GR     +     G++  +      ++DM  + G +  
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
           A +         +   W  +IS     G    A  I  R+  N  EP
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEP 426



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 34/260 (13%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G      VFD + E + + W+ M  G+A       A+ L+  M   G+ PD  T   +L 
Sbjct: 38  GFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLK 97

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C      + G+ +   + K   +  + +  +LI M+A+ G ++ A K+F   + R +VS
Sbjct: 98  SCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVS 157

Query: 181 WTSVIAGLAMHGRGLEAVALFEE--------------------------------MLEAG 208
           +T++IAG    G    A  LF+E                                M+   
Sbjct: 158 YTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTN 217

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD+   V ++SAC+    ++ GR +  S  ND G    ++    ++D+  + G V+ A
Sbjct: 218 VRPDESTMVTVVSACAQSDSIELGR-HVHSWINDHGFASNLKIVNALIDLYSKFGEVETA 276

Query: 269 HEFIQKMPIEANPIIWRTLI 288
            E    +    + I W TLI
Sbjct: 277 CELFDGL-WNKDVISWNTLI 295


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/514 (44%), Positives = 322/514 (62%), Gaps = 45/514 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE----- 59
            V PN FT+P V KAC     L  G+ VHG  +KF    D  V + +V MY SC      
Sbjct: 107 SVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDA 166

Query: 60  ----------------------------------------GGIELGRKVFDEMSERDSVS 79
                                                   G +E+ R +FDEM +R  VS
Sbjct: 167 HRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVS 226

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ MI GYA+ G   +A+++FR+MQ++ V P+ +T+V+VL A + LGALE+GKWV  +  
Sbjct: 227 WNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAV 286

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           +  +     L +ALIDM+AKCG ++KAL++F  +  R +V+W+++IAGLAMHGR  + + 
Sbjct: 287 RNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLD 346

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
            FE+M  AGV P DV ++GLLSACSH GLV++GR +FD M    G+ P+IEHYGCMVD+L
Sbjct: 347 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 406

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            R+G ++E+ E I  MPI+ + +IW+ L+ AC   G +++ + + + L+   P    +YV
Sbjct: 407 GRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV 466

Query: 320 LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE 379
            LS+IYA L  WE   K+R +M +  ++K PG + IELD  I+EF+  D SH +SK+I+ 
Sbjct: 467 ALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHS 526

Query: 380 MLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVK 439
           ML EM R +   GY P T++VL +++EEDKE +LN HSEK+AIAF L+ T P TP+RI K
Sbjct: 527 MLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITK 586

Query: 440 NLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           NLR+C DCHS+ K ISKIY R+I+VRDR RFHHF
Sbjct: 587 NLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHF 620



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 142/334 (42%), Gaps = 55/334 (16%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           P     C  + DL   K +H  ++K  Q  D +     L     S    ++  RK+F  M
Sbjct: 15  PSSFFPCKTMQDL---KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSM 71

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVG 131
              +  S++ +I   +      DA+ +F +M +   V P+  T  +V  AC     L  G
Sbjct: 72  HRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREG 131

Query: 132 KWV-----------ESFI-----------------------------------EKQMVNR 145
           + V           + F+                                   +K+ V+ 
Sbjct: 132 RQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDG 191

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
            V L N +ID + + G+++ A  LF  M  R++VSW  +IAG A  G   EAV +F EM 
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
            A VPP+ V  V +L A S  G ++ G+  +  +++N+ G+   +     ++DM  + G 
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCGS 309

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +++A +  + +P + N + W T+I+     G  K
Sbjct: 310 IEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAK 342



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLL 220
           D+D A K+FRSM+     S+ ++I  L+      +A+ +F EM+E   V P+   F  + 
Sbjct: 60  DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 119

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI-------- 272
            AC     + +GR+    +   FG+         +V M    G +++AH           
Sbjct: 120 KACGRAERLREGRQ-VHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDG 178

Query: 273 ------QKMPIEANPIIWRTLISACCARGELKLAESI 303
                 +K  ++ + ++W  +I      GEL++A ++
Sbjct: 179 CDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNL 215


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/505 (44%), Positives = 317/505 (62%), Gaps = 32/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   VSPNKFTYP +++AC     +  GK +H  VLKF FG D    N L+HMY + + 
Sbjct: 111 MLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 170

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-------------------------- 94
            +E  R+VFD M +RD VSW+++I GY++ G                             
Sbjct: 171 -LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQ 229

Query: 95  -----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                +A  LF +M++  V  D+    ++LSACT LGALE GKW+  +IEK  +     L
Sbjct: 230 SNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKL 289

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              +IDM+ KCG ++KA ++F  +  + I SW  +I GLAMHG+G  A+ LF+EM    V
Sbjct: 290 ATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMV 349

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD + FV +LSAC+H GLV++G+ YF  M    G+ P +EH+GCMVD+L R+G ++EA 
Sbjct: 350 APDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEAR 409

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I +MP+  +  +   L+ AC   G  +L E I K++I  EP +   YVLL+++YA   
Sbjct: 410 KLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAG 469

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RWE   K+R++M+ RG+KK PG ++IE ++ + EF+ G ++H Q+KEIY  LDE+   ++
Sbjct: 470 RWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIR 529

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GYVP T  VL DI+EE+KE+ L  HSEKLAIAF LLKT PG  +RI KNLR+C DCH 
Sbjct: 530 SIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQ 589

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
           A+K ISK+Y+REI++RDR+RFHHF+
Sbjct: 590 ASKLISKVYDREIIIRDRNRFHHFR 614



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMS 73
           + L +C+ + +L   K  H  +++     D      ++     S  G +    +VFD++ 
Sbjct: 25  YGLDSCSTMAEL---KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIP 81

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
             D+  ++ +  GY R  L+ + I ++ +M    V P++ T   ++ AC    A+E GK 
Sbjct: 82  HPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ 141

Query: 134 VESFIEK-------------------------------QMVNRSVGLCNALIDMFAKCGD 162
           + + + K                                M  R V    +LI  +++ G 
Sbjct: 142 IHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGF 201

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           VDKA ++F  M  R  VSW ++IA      R  EA ALF+ M    V  D      +LSA
Sbjct: 202 VDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSA 261

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           C+  G +++G+ +        GI    +    ++DM C+ G +++A E   ++P +    
Sbjct: 262 CTGLGALEQGK-WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP-QKGIS 319

Query: 283 IWRTLISACCARGELKLAESITKRL 307
            W  +I      G+ + A  + K +
Sbjct: 320 SWNCMIGGLAMHGKGEAAIELFKEM 344


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/503 (44%), Positives = 320/503 (63%), Gaps = 34/503 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT--LVHMYGSCEGGIE 63
           V P++     ++   A   ++ +GK++H  V++    + + V  T  L+ MY  C G + 
Sbjct: 221 VRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC-GHLG 279

Query: 64  LGRKVFDEMSERDSVSWSAMIGG-------------------------------YARLGL 92
           L R++F+ ++++  VSW+AMI G                               YA+   
Sbjct: 280 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANC 339

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
              A +LF QM+ SGV P ++T+V++LS C   GAL++GKWV S+I+K+ V     L  A
Sbjct: 340 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA 399

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKCGD++ A +LF     R I  W ++I G AMHG G EA+ +F EM   GV P+
Sbjct: 400 LVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPN 459

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           D+ F+GLL ACSH GLV +G++ F+ M + FG++P+IEHYGCMVD+L R+G + EAHE I
Sbjct: 460 DITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMI 519

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           + MPI+ N I+W  L++AC      +L E    +L+  EP +    VL+S+IYA   RW 
Sbjct: 520 KSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWS 579

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
               +R+ M   GMKK PG ++IE++  ++EF+ GD+SH Q + I EML EM RK+ +AG
Sbjct: 580 DAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAG 639

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS VLL+I+EE+KE AL  HSEKLA+AF L+ T P TPIRIVKNLRVCNDCH+ATK
Sbjct: 640 YVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATK 699

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
            +SKIY R I+VRDR+RFHHF++
Sbjct: 700 LLSKIYGRVIIVRDRNRFHHFRE 722



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 153/297 (51%), Gaps = 11/297 (3%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F  P VLKAC  +    LGK +HG VLK     D+ V N L+ MYG C   +E  R V
Sbjct: 123 DNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC-ACVEYARLV 181

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M ERD VSWS MI   +R      A++L R+M    V P E+ MV++++   D   +
Sbjct: 182 FDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANM 241

Query: 129 EVGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +GK + +++ +   N  +G+    AL+DM+AKCG +  A +LF  +  +T+VSWT++IA
Sbjct: 242 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 301

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G     R  EA ALF+         D + +  +LSA +    +D+    FD M+   G+ 
Sbjct: 302 GCIRSNRLEEARALFDSTQNR----DVMIWTAMLSAYAQANCIDQAFNLFDQMRTS-GVR 356

Query: 247 PKIEHYGCMVDMLCRSGRV---KEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           P       ++ +   +G +   K  H +I K  +E + I+   L+      G++  A
Sbjct: 357 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 413



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P K T   +L  CA  G L+LGK VH  + K +   D  +   LV MY  C G
Sbjct: 350 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKC-G 408

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    ++F E   RD   W+A+I G+A  G   +A+D+F +M+  GV P++IT + +L 
Sbjct: 409 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 468

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRT 177
           AC+  G +  G K  E  +    +   +     ++D+  + G +D+A ++ +SM     T
Sbjct: 469 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 528

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           IV W +++A   +H           ++LE  + P++  +  L+S
Sbjct: 529 IV-WGALVAACRLHKNPQLGELAATQLLE--IEPENCGYNVLMS 569



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 16/235 (6%)

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           S  W+ +I  Y +     +A++++ Q++      D     +VL AC  +   ++GK +  
Sbjct: 89  SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 148

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           F+ K+ ++R V + NAL+ M+ +C  V+ A  +F  M  R +VSW+++I  L+ +     
Sbjct: 149 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYG 253
           A+ L  EM    V P +VA V +++  +    +  G+    Y     N+       EH G
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNN-------EHMG 261

Query: 254 -----CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                 ++DM  + G +  A +    +  +   + W  +I+ C     L+ A ++
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLEEARAL 315


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/512 (45%), Positives = 327/512 (63%), Gaps = 37/512 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  + VSP+  T+PF+L +      L LG+  H  +L F    D  V+ +L++MY SC  
Sbjct: 52  MRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGD 111

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I   RK+FDEM ER+ +SWS +I GY   
Sbjct: 112 LSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMC 171

Query: 91  GLSTDAIDLFRQMQISG-----VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G   +A+DLFR+MQ+       V P++ TM TVLSAC  LGALE GKWV S+I+K  V  
Sbjct: 172 GKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEI 231

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV-SWTSVIAGLAMHGRGLEAVALFEEM 204
            + L  ALIDM+AKCG +++A ++F ++  +  V +++++I  LAM+G   E   +F EM
Sbjct: 232 DIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEM 291

Query: 205 LEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
             +  + P+ V FVG+L AC H GL++KG+ YF  M  +FGI P I+HYGCMVD+  RSG
Sbjct: 292 TTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSG 351

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            +KEA  FI  MP+E + +IW +L+S     G++K  E   KRLI  +PM+   YVLLS+
Sbjct: 352 LIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSN 411

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +YAK  RW +  +IR  M+ +G+KK+PG + +E++  ++EFV GD+S  +S+ IY ML+E
Sbjct: 412 VYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEE 471

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           + +++++AGYV  T EVLLD+ E+DKE AL+ HSEKLAIAF L+KT PGTP+RI+KNLR+
Sbjct: 472 IMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRI 531

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH   K ISK+++REIVVRD +RFHHF D
Sbjct: 532 CGDCHLVMKMISKLFSREIVVRDCNRFHHFSD 563


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 318/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+SPN +T+ FVL AC  +  L  G+ +H  ++K     +  + N L+ +Y +C G
Sbjct: 58  MFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAAC-G 116

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    +FDEM E DS SWS M+ GY++ G + + + L R+MQ   V  D  T+ +V+ 
Sbjct: 117 CMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVG 176

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C DLG L++GKWV S+I+K+ V   V L  AL+ M++KCG +D ALK+F+ M  R + +
Sbjct: 177 VCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTT 236

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +IAG A+HG   +A+ LF+ M  + + P+ V F  +LSA SH GLV+KG + F++M 
Sbjct: 237 WSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMW 296

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ I P+I+HYGCMVD+ CR+G V  AH+FIQ MPIE N ++WRTL+ AC   G   L 
Sbjct: 297 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLG 356

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I+++++  +P    NYV +S++YA L RW    ++R +M ++  KK  G + IE++  
Sbjct: 357 EHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFM 416

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F+ G++SH + ++IY ML +M RK+K+ G+V +T +VL DI+EE+KE AL  HSE+L
Sbjct: 417 VHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERL 476

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ LL TP G+PIRIVKNLR C DCH   K IS++YNREI++RDR  FHHF++
Sbjct: 477 AIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRE 531



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 2/240 (0%)

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           S  G +     +F      +   W+ +I GY+       AI L++ M + G+ P+  T  
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VL+AC  L  L  G+ + S I K  ++    L N LI ++A CG +D A  +F  M   
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEP 131

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
              SW+++++G + +G+ +E + L  EM    V  D      ++  C   G++D G+ + 
Sbjct: 132 DSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGK-WV 190

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S  +  G+   +     +V M  + G +  A +  Q M  E +   W  +I+     G 
Sbjct: 191 HSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGH 249


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/505 (42%), Positives = 332/505 (65%), Gaps = 31/505 (6%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS---- 57
           L +G+ P+  T+PF++KACA + +  +G   HG  +K  F  D +VQN+LVHMY S    
Sbjct: 109 LRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDI 168

Query: 58  ----------CE----------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
                     C                 G  +  R++FD M ER+ V+WS MI GYAR  
Sbjct: 169 NAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNN 228

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
               A++ F  +Q  GV  +E  MV V+S+C  LGAL +G+    ++ +  ++ ++ L  
Sbjct: 229 CFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGT 288

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           A++DM+A+CG+V+KA+ +F  +  + ++ WT++IAGLAMHG   +A+  F EM + G  P
Sbjct: 289 AVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVP 348

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
            D+ F  +L+ACSH G+V++G E F+SMK D G+ P++EHYGCMVD+L R+G++++A +F
Sbjct: 349 RDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKF 408

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           + KMP++ N  IWR L+ AC     +++ E + K L+  +P +  +YVLLS+IYA+  +W
Sbjct: 409 VLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKW 468

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE-MGRKMKK 390
           +  T +R++M  +G++K PG +LIE+D +++EF  GDK+H + ++I  + ++ +  K+K 
Sbjct: 469 KDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKL 528

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGYV  T+E + DI+EE+KE AL++HSEKLAIA+ ++K    TPIRIVKNLRVC DCH+A
Sbjct: 529 AGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTA 588

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TK ISK++  E++VRDR+RFHHFK+
Sbjct: 589 TKLISKVFEVELIVRDRNRFHHFKE 613


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 322/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ +T+P +LKACA    L  G+ +H   +K    D+++V  TL++MY  CE 
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED 179

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD + E   V ++AMI GYAR     +A+ LFR+MQ   + P+EIT+++VLS
Sbjct: 180 -VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LG+L++GKW+  + +K    + V +  ALIDMFAKCG +D A+ +F  M  +   +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I   A HG+  +++ +FE M    V PD++ F+GLL+ACSH G V++GR+YF  M 
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + FGI+P I+HYG MVD+L R+G +++A+EFI K+PI   P++WR L++AC +   L LA
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +++R+   +  H  +YV+LS++YA+  +WE    +R+VM  R   K+PG + IE++N 
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD     + +++  LDEM +++K +GYVP TS V+  ++N+++KE  L  HSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI F LL TPPGT IR+VKNLRVC DCH+A K IS I+ R++V+RD  RFHHF+D
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 2/238 (0%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           E  +   R +F+ MSE D V +++M  GY+R     +   LF ++   G+ PD  T  ++
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC    ALE G+ +     K  ++ +V +C  LI+M+ +C DVD A  +F  +    +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V + ++I G A   R  EA++LF EM    + P+++  + +LS+C+  G +D G+ +   
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK-WIHK 254

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                     ++    ++DM  + G + +A    +KM  + +   W  +I A    G+
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGK 311


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 312/475 (65%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V+PNK TY  +L+ C     L  GK VH  +++  +G +I V N L+ MY  C G
Sbjct: 289 MQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKC-G 347

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G++  RK+F ++  RD V+W+AM+ GYA+LG   +AIDLFR+MQ  G+ PD++T  + L+
Sbjct: 348 GLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALT 407

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+    L+ GK +   +     +  V L +AL+ M+AKCG +D A  +F  M+ R +V+
Sbjct: 408 SCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVA 467

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A HGR  EA+  FE+M + G+ PD V F  +LSAC+H GLV++GR++F SM 
Sbjct: 468 WTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMY 527

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P +EHY C VD+L R+G ++EA   I  MP +  P +W  L+SAC    +++  
Sbjct: 528 LDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERG 587

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + ++  +P  +  YV LS+IYA   R+E   K+R+VM+KR + K PG + IE+D +
Sbjct: 588 ERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGK 647

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   DKSH ++KEIY  L ++  ++K+ GYVP T  VL D++EE K   L  HSE+L
Sbjct: 648 VHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERL 707

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI + L+KTPPGTPIRIVKNLRVC DCH+A+KFISK+  REI+ RD HRFHHF D
Sbjct: 708 AITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVD 762



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 3/296 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+K T+  +L A      L +G+ VH  + K     +  V  +LV MY  C G I  
Sbjct: 192 GCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKC-GDISK 250

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD++ E++ V+W+ +I GYA+ G    A++L  +MQ + V P++IT  ++L  CT 
Sbjct: 251 AQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTT 310

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             ALE GK V  +I +    R + + NALI M+ KCG + +A KLF  +  R +V+WT++
Sbjct: 311 PLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAM 370

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + G A  G   EA+ LF  M + G+ PD + F   L++CS    + +G+     + +  G
Sbjct: 371 VTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-G 429

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               +     +V M  + G + +A     +M  E N + W  +I+ C   G  + A
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGRCREA 484



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 152/280 (54%), Gaps = 3/280 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ CA +  L  G+ VH A+LK     + +++NTL+ MY  C G +   R+VFD + +R
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC-GSLTDARRVFDGIRDR 160

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW+AMI  +     + +A   +  M+++G  PD++T V++L+A T+   L+VG+ V 
Sbjct: 161 NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             I K  +     +  +L+ M+AKCGD+ KA  +F  +  + +V+WT +IAG A  G+  
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVD 280

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
            A+ L E+M +A V P+ + +  +L  C+    ++ G++    +    G   +I     +
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQS-GYGREIWVVNAL 339

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + M C+ G +KEA +    +P   + + W  +++     G
Sbjct: 340 ITMYCKCGGLKEARKLFGDLP-HRDVVTWTAMVTGYAQLG 378


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/475 (45%), Positives = 320/475 (67%), Gaps = 5/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+  + FT+PFVLKAC+    L +   +H  ++K+  G DI VQN L+ +YG C G
Sbjct: 78  MRSNGIPLDNFTFPFVLKACS---RLQINLHLHSLIVKYGLGSDIFVQNALICVYGYC-G 133

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            +E+  KVFDEMSERDSVSWS +I  +   G +++A+DLF +MQ+   V PDE+TM++V+
Sbjct: 134 SLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVI 193

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SA + LG LE+G+WV +FI +     SV L  ALIDMF++CG +D+++ +F  M  R ++
Sbjct: 194 SAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVL 253

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WT++I GL +HGR +EA+A+F  M ++GV PD V F G+L ACSH GLV +G + F+S+
Sbjct: 254 TWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESI 313

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  +G+ P ++HYGCMVD+L R+G + EA++F+++MP++ N IIWRTL+ AC     L L
Sbjct: 314 RKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGL 373

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE +  ++         + VLLS++Y    RW +K  IR  M ++ + K PG + I +D 
Sbjct: 374 AEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQ 433

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+EFV GD SH QS++I + L  +   ++  GY+  T  VL DI EE++E +L+ HSEK
Sbjct: 434 TIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEK 493

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AFA+L       IRI+KNLR+C DCHS  K IS  + R+I++RDR+RFHHF+
Sbjct: 494 LAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFE 548


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/475 (46%), Positives = 322/475 (67%), Gaps = 7/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA  G + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 198 MMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKC-G 256

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++ + +S +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 121 ACTDLGALEVGKWVESFIEKQM----VNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNG 175
           AC  LGA+++G+W+  +I+K++    V  +  L  +LIDM+AKCGD+D A ++   S   
Sbjct: 317 ACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFN 376

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R++ +W ++I G AMHGR   A  +F  M + G+ PDD+ FVGLLSACSH G++D GR  
Sbjct: 377 RSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNI 436

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F SM+ D+ I PK+EHYGCM+D+L  SG  KEA E I  MP+E + +IW +L+ AC   G
Sbjct: 437 FRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG 496

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM-KKIPGSTL 354
            L+L ES  K+LI  EP +  +YVLLS+IYA   +W +  KIR +++ +GM KK+PG + 
Sbjct: 497 NLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSS 556

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE+D+ ++EF+ GDK H Q++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL 
Sbjct: 557 IEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALR 616

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHR 469
            HSEKLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR R
Sbjct: 617 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M+  G+ PN FT+PF+LK+CA       G+ +HG VLK  F  D++V  +L+ MY     
Sbjct: 66  MISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     +  G IE  +K+FDE+  +D VSW+AMI GYA  
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G    A++LF++M  + V PDE TM TV+SAC   G++E+G+ V S+I       ++ + 
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV 245

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+V+ A +L   ++ + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D       +         ++DM  + G +  
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDA 365

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
           A +         +   W  +I      G    A  I  R+  N  EP
Sbjct: 366 APQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEP 412



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 116/259 (44%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 24  GLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLK 83

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C      + G+ +   + K   +  + +  +LI M+A+ G ++ A K+F   + R +VS
Sbjct: 84  SCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVS 143

Query: 181 WTSVIAGLAMH-------------------------------GRGLEAVALFEEMLEAGV 209
           +T++I G A                                 G   +A+ LF+EM++  V
Sbjct: 144 YTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNV 203

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+     ++SAC+  G ++ GR+   S  ND G    ++    ++D+  + G V+ A 
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVETAC 262

Query: 270 EFIQKMPIEANPIIWRTLI 288
           E ++ +    + I W TLI
Sbjct: 263 ELLEGLS-NKDVISWNTLI 280


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/500 (43%), Positives = 324/500 (64%), Gaps = 30/500 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-------- 57
           ++P+ +T+ F+++  A +     G SVHGA +K+ F  D HVQ+ L++MY          
Sbjct: 107 LAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACH 166

Query: 58  ------CE----------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                 CE                G +   RK+FD+MS +D ++W+AMI GY + G S +
Sbjct: 167 RVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSRE 226

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ LF  MQ  GV  +E++MV+VLSAC+ LGAL+ G+W  ++IE+  +  ++ L  ALID
Sbjct: 227 ALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALID 286

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKCG+++KA+++F  M  + + +W+S I GLAM+G G + + LF  M +  V P+++ 
Sbjct: 287 MYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEIT 346

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FV +L  CS  GLV++GR++F+SM   +GI P++EHYGCMVD+  R+G + EA  FI  M
Sbjct: 347 FVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSM 406

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P+  +   W  L++AC     +++ E  +++++  E  +   YVLLS+IYA    W++ +
Sbjct: 407 PVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVS 466

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
            +R+ M+ +G++K PG ++IE+  E++EF  GDKSH +  EI  ML E+ R++K +GYV 
Sbjct: 467 NVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVA 526

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            T+ V  DI EE+KEDAL  HSEK+AIAF L+   P  PIRIVKNLRVC DCH ATK IS
Sbjct: 527 NTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMIS 586

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           K +NREIVVRDR+RFHHF+D
Sbjct: 587 KAFNREIVVRDRNRFHHFRD 606



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 3/187 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+ +   VL AC+ +G L+ G+  H  + + +    + +   L+ MY  C G
Sbjct: 234 MQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKC-G 292

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF  M E++  +WS+ IGG A  G     ++LF  M+   V P+EIT V+VL 
Sbjct: 293 NMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLR 352

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            C+ +G +E G K  ES  +   +   +     ++D++ + G +D+AL    SM  R  V
Sbjct: 353 GCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHV 412

Query: 180 -SWTSVI 185
            +W +++
Sbjct: 413 GAWGALL 419


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/476 (46%), Positives = 306/476 (64%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ PN+ T   ++K C   G L LGK +H   L+  F   + +    + MYG C G
Sbjct: 319 MLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKC-G 377

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFD    +D + WSAMI  YA+     +A D+F  M   G+ P+E TMV++L 
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C   G+LE+GKW+ S+I+KQ +   + L  + +DM+A CGD+D A +LF     R I  
Sbjct: 438 ICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISM 497

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G AMHG G  A+ LFEEM   GV P+D+ F+G L ACSH GL+ +G+  F  M 
Sbjct: 498 WNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMV 557

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++FG  PK+EHYGCMVD+L R+G + EAHE I+ MP+  N  ++ + ++AC     +KL 
Sbjct: 558 HEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLG 617

Query: 301 ESITKRLIGNEPMHESNY-VLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           E   K+ +  EP H+S Y VL+S+IYA   RW     IR  M   G+ K PG + IE++ 
Sbjct: 618 EWAAKQFLSLEP-HKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNG 676

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EF+ GD+ H  +K++YEM+DEM  K++ AGY P  S VL +I++E K  ALN HSEK
Sbjct: 677 LLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEK 736

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A+ L+ T PG PIRIVKNLRVC+DCH+ATK +SKIY REI+VRDR+RFHHFK+
Sbjct: 737 LAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKE 792



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 10/344 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F  P VLKAC  I    LG+ VHG V+K  F  D+ V N L+ MY    G + L R +
Sbjct: 123 DNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEV-GSLALARLL 181

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD++  +D VSWS MI  Y R GL  +A+DL R M +  V P EI M+++     +L  L
Sbjct: 182 FDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADL 241

Query: 129 EVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           ++GK + +++ +  +     V LC ALIDM+ KC ++  A ++F  ++  +I+SWT++IA
Sbjct: 242 KLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIA 301

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKNDFGI 245
                    E V LF +ML  G+ P+++  + L+  C   G ++ G+  +  +++N F +
Sbjct: 302 AYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTL 361

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +      +DM  + G V+ A           + ++W  +IS+      +  A  I  
Sbjct: 362 --SLVLATAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAMISSYAQNNCIDEAFDIFV 418

Query: 306 RLIGN--EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
            + G    P +E   V L  I AK    E    I   +DK+G+K
Sbjct: 419 HMTGCGIRP-NERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIK 461



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 5/293 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDD-IHVQNTLVHMYGSCEGGIE 63
           V P++     +    A + DL LGK++H  V++  + G   + +   L+ MY  CE  + 
Sbjct: 221 VKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN-LA 279

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             R+VFD +S+   +SW+AMI  Y       + + LF +M   G+ P+EITM++++  C 
Sbjct: 280 YARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECG 339

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
             GALE+GK + +F  +     S+ L  A IDM+ KCGDV  A  +F S   + ++ W++
Sbjct: 340 TAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSA 399

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+  A +    EA  +F  M   G+ P++   V LL  C+  G ++ G+ +  S  +  
Sbjct: 400 MISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGK-WIHSYIDKQ 458

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           GI   +      VDM    G +  AH    +   + +  +W  +IS     G 
Sbjct: 459 GIKGDMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGH 510



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%)

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           S +I  Y +     DA  ++  M+ +    D   + +VL AC  + +  +G+ V  F+ K
Sbjct: 93  SFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVK 152

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
              +  V +CNALI M+++ G +  A  LF  +  + +VSW+++I      G   EA+ L
Sbjct: 153 NGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDL 212

Query: 201 FEEMLEAGVPPDDVAFVGL 219
             +M    V P ++  + +
Sbjct: 213 LRDMHVMRVKPSEIGMISI 231


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/507 (43%), Positives = 326/507 (64%), Gaps = 36/507 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           +L   ++PN+FT+  +LK+C+       GK +H  VLKF  G D +V   LV +Y     
Sbjct: 119 LLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGD 174

Query: 57  -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C   +G +E  R +FD M ERD VSW+ MI GY++ 
Sbjct: 175 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQH 234

Query: 91  GLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G  +DA+ LF+++   G   PDEIT+V  LSAC+ +GALE G+W+  F+    +  +V +
Sbjct: 235 GFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKV 294

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AG 208
           C ALIDM++KCG +++A+ +F     + IV+W ++I G AMHG   +A+ LF+EM    G
Sbjct: 295 CTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITG 354

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + P D+ F+G L AC+H GLV++G + F+SM  ++GI PKIEHYGC+V +L R+G++K A
Sbjct: 355 LQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 414

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           +E I+ M +EA+ ++W +++ +C   GE  L + I + LIG    +   YVLLS+IYA +
Sbjct: 415 YEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALV 474

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             +E   K+R +M ++G+ K PG + IE+DN+++EF  GD+ H +SKEIY ML +M  ++
Sbjct: 475 GDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERI 534

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K  GYVP T+ VL D+ E +KE +L  HSE+LAIA+ L+ T PG+P++I KNLRVC+DCH
Sbjct: 535 KSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCH 594

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           + TK ISKI  R+IV+RDR+RFHHF D
Sbjct: 595 TVTKLISKITGRKIVMRDRNRFHHFSD 621



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 36/296 (12%)

Query: 32  VHGAVLKFQFGDDIH----VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           +H A+L+      IH    V N  +H   +  G I     +F +  + D   ++A I   
Sbjct: 46  IHAAILRHNLL--IHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTA 103

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA-------LEVGKWVESFIEK 140
           +  GL   A  L+ Q+  S + P+E T  ++L +C+           L+ G  ++ ++  
Sbjct: 104 SINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGLGLDPYVAT 163

Query: 141 QMVN--------------------RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            +V+                    RS+    A+I  +AK G+V+ A  LF  M  R IVS
Sbjct: 164 GLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVS 223

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W  +I G + HG   +A+ LF+++L  G P PD++  V  LSACS  G ++ GR +    
Sbjct: 224 WNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGR-WIHVF 282

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            N   I   ++    ++DM  + G ++EA       P   + + W  +I+     G
Sbjct: 283 VNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMITGYAMHG 337


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/476 (44%), Positives = 320/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ +T+P +LKACA    L  G+ +H   +K    D+++V  TL++MY  CE 
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED 179

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD + E   V ++AMI GYAR     +A+ LFR+MQ   + P+EIT+++VLS
Sbjct: 180 -VDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LG+L++GKW+  + +K    + V +  ALIDMFAKCG +D A+ +F  M  +   +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I   A HG+  +++ +FE M    V PD++ F+GLL+ACSH G V++GR+YF  M 
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + FGI+P I+HYG MVD+L  +G +++A+EFI K+PI   P++WR L++AC +   L LA
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +++R+   +  H  +YV+LS++YA+  +WE    +R+VM  R   K+PG + IE++N 
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD     + +++  LDEM +++K +GYVP TS V+  ++N+++KE  L  HSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI F LL TPPGT IR+VKNLRVC DCH+A K IS I+ R++V RD  RFHHF+D
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFED 594



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 2/238 (0%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           E  +   R +F+ MSE D V +++M  GY+R     +   LF ++   G+ PD  T  ++
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC    ALE G+ +     K  ++ +V +C  LI+M+ +C DVD A  +F  +    +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCV 195

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V + ++I G A   R  EA++LF EM    + P+++  + +LS+C+  G +D G+ +   
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK-WIHK 254

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                     ++    ++DM  + G + +A    +KM  + +   W  +I A    G+
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGK 311


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/434 (46%), Positives = 313/434 (72%), Gaps = 1/434 (0%)

Query: 42  GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           G D+   NT++H Y +  G + + R++FD   +RD+ SWS+MI  YA+   S +A++L+R
Sbjct: 144 GRDLVSWNTMIHGY-AVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWR 202

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
           +M+++GV PD I+MV+VLSAC+ +GAL +G  V  F+E   V   + L  AL+DM+AKCG
Sbjct: 203 EMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCG 262

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           D++ +LK+F +M  + +++W+S+I GLA HG G +A++LF EM+  G+ P+++ F+G+L 
Sbjct: 263 DIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLI 322

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
           AC+H GLV+ G++YF SM +  G++P++EHYGCMVD+L R+G V+EA E I+ M  + +P
Sbjct: 323 ACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDP 382

Query: 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
           IIWRTL+ AC     +++AE    +L   +P+ + +YVLLS+IYA+   WE   ++R+ +
Sbjct: 383 IIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTI 442

Query: 342 DKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL 401
            +  ++++PG + IE +N ++EFV GD+SH + +EIY+ML+EM  ++++AGY P TS VL
Sbjct: 443 RRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVL 502

Query: 402 LDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNRE 461
            DI+E+ K+ AL +HSEKLAIAF LL TP  + +RI KNLR C DCHSA K IS  Y+R+
Sbjct: 503 QDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRK 562

Query: 462 IVVRDRHRFHHFKD 475
           ++VRDR+RFHHF +
Sbjct: 563 LIVRDRNRFHHFSE 576



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+P+  +   VL AC+ +G L +G  VH  V   +   D+ +   LV MY  C G IE 
Sbjct: 208 GVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKC-GDIEN 266

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF  M  +D ++WS+MI G A  GL  DA+ LF +M   G+ P+EIT + VL ACT 
Sbjct: 267 SLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTH 326

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
           +G +  G K+  S  +   V   +     ++D+  + G V++A++L RSM  +   + W 
Sbjct: 327 VGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWR 386

Query: 183 SVIAGLAMH 191
           +++    +H
Sbjct: 387 TLLGACRIH 395



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 110/263 (41%), Gaps = 43/263 (16%)

Query: 28  LGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGG-IELGRKVFDEMSERDSVSWSAMIG 85
           LG S+H   L+  F   D+ V+  LV MY     G I L R  FDE   RD    + M+ 
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
            Y   G   +A  +F  M                                         R
Sbjct: 125 AYVARGEVAEARKVFDGMS---------------------------------------GR 145

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
            +   N +I  +A  GDV  A ++F     R   SW+S+I+  A      EA+ L+ EM 
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
            AGV PD ++ V +LSACS  G +  G E    ++++  +   ++    +VDM  + G +
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESN-RVEVDMKLGTALVDMYAKCGDI 264

Query: 266 KEAHEFIQKMPIEANPIIWRTLI 288
           + + +    MP++ + + W ++I
Sbjct: 265 ENSLKVFHAMPVK-DVLTWSSMI 286


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/528 (41%), Positives = 321/528 (60%), Gaps = 60/528 (11%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ------------------- 48
           PNKFTYP + KAC+    +  G+ +HG V+K   G D+H++                   
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKM 189

Query: 49  -----------NTLVHMYGSCE------------------------------GGIELGRK 67
                      NT++  Y  C                               G +   RK
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FDEMSERD +SWS+M+ GY   G   +A+++F+QMQ     P    + +VL+AC+++GA
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           ++ G+WV +++++  +     L  AL+DM+AKCG +D   ++F  M  R I +W ++I G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LA+HGR  +A+ LF ++ E  + P+ +  VG+L+AC+H G VDKG   F +M+  +G+ P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           ++EHYGCMVD+L RSG   EA + I  MP++ N  +W  L+ AC   G   LAE + K L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +  EP +   YVLLS+IYAK+ R++  +KIR++M  RG+K +PG ++++L+  ++EF  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           D SH Q KEIY  L  +  +++ AG+ P TS+VL DI+EE+KE A+N HSEKLAIAF L+
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            T PG  I IVKNLRVC+DCHSATK IS+I++REI+VRDR R+HHFK+
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKN 657


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/472 (46%), Positives = 316/472 (66%), Gaps = 4/472 (0%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P++FT+  VLKACAG+  +  G+ +H  V K  F  ++ V+N+L+ MY    G + L R
Sbjct: 89  NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKA-GYLLLAR 147

Query: 67  KVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSACT 123
            +FDEM   +R+ V W+AMI GYA+    +DAI++FR MQ   GV P+++T+V+VL AC 
Sbjct: 148 HLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACA 207

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGAL++GKW++ FI ++ +   + L NAL DM+AKCG + +A ++F  M  R ++SW+ 
Sbjct: 208 HLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSI 267

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I GLAM+G   EA   F EML+ G  P+DV F+GLL+AC+H GLV KG   F++M  ++
Sbjct: 268 IICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEY 327

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+ PK+EHYGC+VD+L R+G + +A + I  MP++ N IIW  L+  C    +    + +
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            + ++  +  H  +YV L+++Y+ + R +   K R  M + G+ K PG + IE+DN ++E
Sbjct: 388 VQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHE 447

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD SH +S +IY M+ E+  KMK AGY P T  V+  I+EE+KEDAL+ HSEKLAIA
Sbjct: 448 FFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIA 507

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ T  GT IR+VKNLR+CNDCH A K IS I  REI+VRDR RFHHFKD
Sbjct: 508 FGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKD 559



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  T   VL ACA +G L+LGK + G + + +    + + N L  MY  C G I  
Sbjct: 191 GVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKC-GCITE 249

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VF++M ERD +SWS +I G A  G + +A   F +M   G  P+++  + +L+ACT 
Sbjct: 250 ARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTH 309

Query: 125 LGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWT 182
            G ++ G    + ++K+  V+  V     ++D+ ++ G++DKA  +  SM  +  ++ W 
Sbjct: 310 AGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWG 369

Query: 183 SVIAGLAMH---GRGLEAVALFEEM 204
           +++ G  ++   GRG   V    E+
Sbjct: 370 ALLGGCRIYRDSGRGQRVVQHILEL 394


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 321/476 (67%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV+P+ +T+  +LKACA       G+  HG  +K    +  +V  TL++MY  C G
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAEC-G 187

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M     VS++AMI    R  L  +A+ LFR+MQ  G+ P  +T+++VLS
Sbjct: 188 DVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+W+  +I K  ++  V +  ALIDM+AKCG ++ A+ +F+ M  R   +
Sbjct: 248 ACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQA 307

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ ++   A HG G EA+++FEEM + G+ PDDV F+G+L ACSH G+V +G +YFDSM+
Sbjct: 308 WSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR 367

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++GI+  I+HYGC+ D+L RSG+++ A++FI ++PI+   I+WRTL+SAC   G++ + 
Sbjct: 368 -EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A   RWE+   +R++M ++G+ K+PG + IE+DN 
Sbjct: 427 KRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNM 486

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD SH  S+E   M+DE+  ++K  GYVP TS V  +++ EE+K  +L  HSEK
Sbjct: 487 VHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEK 546

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI+F LL T PGT +RIVKNLRVC DCHS  K +S ++NR I++RD +RFHHF+D
Sbjct: 547 LAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 14/273 (5%)

Query: 62  IELGRKVFDEMSERDSVSW-SAMIGGYARLGL----STDAIDLFRQMQISGVCPDEITMV 116
           +   R+VFD +     V W + ++ GYAR G     + +A  +F +M   GV PD  T V
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           ++L AC    A E G+       K        +   LI+M+A+CGDV  A  +F  M+G 
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--- 233
            +VS+ ++I          EA+ LF EM   G+ P  V  + +LSAC+  G ++ GR   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           +Y   M+ D      ++    ++DM  + G +++A    Q M    +   W  ++ A   
Sbjct: 263 DYIRKMRLD----SLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYAN 317

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
            G  + A S+ + +   + M   +   L  +YA
Sbjct: 318 HGYGREAISMFEEM-KKQGMKPDDVTFLGVLYA 349


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 321/476 (67%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV+P+ +T+  +LKACA       G+  HG  +K    +  +V  TL++MY  C G
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAEC-G 187

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M     VS++AMI    R  L  +A+ LFR+MQ  G+ P  +T+++VLS
Sbjct: 188 DVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+W+  +I K  ++  V +  ALIDM+AKCG ++ A+ +F+ M  R   +
Sbjct: 248 ACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQA 307

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ ++   A HG G EA+++FEEM + G+ PDDV F+G+L ACSH G+V +G +YFDSM+
Sbjct: 308 WSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR 367

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++GI+  I+HYGC+ D+L RSG+++ A++FI ++PI+   I+WRTL+SAC   G++ + 
Sbjct: 368 -EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A   RWE+   +R++M ++G+ K+PG + IE+DN 
Sbjct: 427 KRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNM 486

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD SH  S+E   M+DE+  ++K  GYVP TS V  +++ EE+K  +L  HSEK
Sbjct: 487 VHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEK 546

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI+F LL T PGT +RIVKNLRVC DCHS  K +S ++NR I++RD +RFHHF+D
Sbjct: 547 LAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 14/273 (5%)

Query: 62  IELGRKVFDEMSERDSVSWSAMI-----GGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           +   R+VFD +     V W   +      G    G + +A  +F +M   GV PD  T V
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           ++L AC    A E G+       K        +   LI+M+A+CGDV  A  +F  M+G 
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--- 233
            +VS+ ++I          EA+ LF EM   G+ P  V  + +LSAC+  G ++ GR   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           +Y   M+ D      ++    ++DM  + G +++A    Q M    +   W  ++ A   
Sbjct: 263 DYIRKMRLD----SLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYAN 317

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
            G  + A S+ + +   + M   +   L  +YA
Sbjct: 318 HGYGREAISMFEEM-KKQGMKPDDVTFLGVLYA 349


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/528 (41%), Positives = 321/528 (60%), Gaps = 60/528 (11%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ------------------- 48
           PNKFTYP + KAC+    +  G+ +HG V+K   G D+H++                   
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKM 189

Query: 49  -----------NTLVHMYGSCE------------------------------GGIELGRK 67
                      NT++  Y  C                               G +   RK
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FDEMSERD +SWS+M+ GY   G   +A+++F+QMQ     P    + +VL+AC+++GA
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           ++ G+WV +++++  +     L  AL+DM+AKCG +D   ++F  M  R I +W ++I G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LA+HGR  +A+ LF ++ E  + P+ +  VG+L+AC+H G VDKG   F +M+  +G+ P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           ++EHYGCMVD+L RSG   EA + I  MP++ N  +W  L+ AC   G   LAE + K L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +  EP +   YVLLS+IYAK+ R++  +KIR++M  RG+K +PG ++++L+  ++EF  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           D SH Q KEIY  L  +  +++ AG+ P TS+VL DI+EE+KE A+N HSEKLAIAF L+
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            T PG  I IVKNLRVC+DCHSATK IS+I++REI+VRDR R+HHFK+
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKN 657


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/505 (44%), Positives = 322/505 (63%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G +P   TY  VL AC  G GD+ LG  VHG V+      D+ V+N LV MY  C 
Sbjct: 135 MARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECA 194

Query: 60  ------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                         G ++  R +F  M ERD+VSW+AMI GY +
Sbjct: 195 DMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQ 254

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                +A+++FR+MQ S V  DE TMV+V++AC  LGALE+G+WV  ++ +Q +     +
Sbjct: 255 AARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFV 314

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NALIDM++KCG +++AL +F+ M+ R   +WT++I GLA++G G EA+ +F  M+    
Sbjct: 315 GNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSE 374

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+V F+G+L+AC+H GLVDKGRE+F SM+  + I P + HYGC++D+  R+G++ EA 
Sbjct: 375 TPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEAL 434

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I +MP+  N  IW TL++AC   G  ++ E +T+RL+  +P + + Y LLS+IYAK  
Sbjct: 435 DAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCN 494

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RWE   ++R  + ++G+KK PG +LIE++  I+EFV GD+SH  SKEIY  L+ +   + 
Sbjct: 495 RWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLN 554

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P  +EV +++ EE+K+  L  HSEKLAIAFALL + P T IRIVKNLR+C DCH+
Sbjct: 555 NVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHN 614

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
           A K IS++Y RE+VVRDR RFHHF+
Sbjct: 615 AIKLISRLYGREVVVRDRTRFHHFR 639



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 37/342 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+ +T+P +LKA A        ++VH  V+KF  G + HV  +LV  Y +   
Sbjct: 34  MLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGD 93

Query: 61  GIELGRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G      + +   ERD+ V W+A+I G+ R     +A   F  M  +G  P  +T V+VL
Sbjct: 94  GAAARALLSER--ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVL 151

Query: 120 SAC-TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC    G + +G  V   +    V   + + NAL+DM+A+C D++ A KLF  M  R++
Sbjct: 152 SACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSV 211

Query: 179 VSWTSVIAGLAMHG-------------------------------RGLEAVALFEEMLEA 207
           VSWTS+++GL   G                               R  EA+ +F EM  +
Sbjct: 212 VSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCS 271

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            V  D+   V +++AC+  G ++ G E+     +  GI         ++DM  + G ++ 
Sbjct: 272 NVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIER 330

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           A +  + M    +   W  +I      G  + A  +  R+IG
Sbjct: 331 ALDVFKDMH-HRDKFTWTAIILGLAVNGYGEEAIEMFHRMIG 371



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 37/298 (12%)

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           DA+  + +M   G  PD  T   +L A     +    + V + + K  + R+  +  +L+
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
             +A  GD   A  L       T V W ++I+G     R  EA   F +M  AG  P  V
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPV 145

Query: 215 AFVGLLSACSH-CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM--------------- 258
            +V +LSAC    G V  G +    +    G++P +     +VDM               
Sbjct: 146 TYVSVLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 259 ----------------LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
                           L R GRV EA +   +MP E + + W  +I         + A  
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP-ERDTVSWTAMIDGYVQAARFREALE 263

Query: 303 ITKRL-IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK--KIPGSTLIEL 357
           + + +   N    E   V +    A+L   E    +R  M ++G+K     G+ LI++
Sbjct: 264 MFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM 321


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 321/476 (67%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV+P+ +T+  +LKACA       G+  HG  +K    +  +V  TL++MY  C G
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAEC-G 187

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M     VS++AMI    R  L  +A+ LFR+MQ  G+ P  +T+++VLS
Sbjct: 188 DVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+W+  +I K  ++  V +  ALIDM+AKCG ++ A+ +F+ M  R   +
Sbjct: 248 ACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQA 307

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ ++   A HG G EA+++FEEM + G+ PDDV F+G+L ACSH G+V +G +YFDSM+
Sbjct: 308 WSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR 367

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++GI+  I+HYGC+ D+L RSG+++ A++FI ++PI+   I+WRTL+SAC   G++ + 
Sbjct: 368 -EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A   RWE+   +R++M ++G+ K+PG + IE+DN 
Sbjct: 427 KRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNM 486

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD SH  S+E   M+DE+  ++K  GYVP TS V  +++ EE+K  +L  HSEK
Sbjct: 487 VHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEK 546

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI+F LL T PGT +RIVKNLRVC DCHS  K +S ++NR I++RD +RFHHF+D
Sbjct: 547 LAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 14/273 (5%)

Query: 62  IELGRKVFDEMSERDSVSWSAMI-----GGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           +   R+VFD +     V W   +      G    G + +A  +F +M   GV PD  T V
Sbjct: 83  LAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           ++L AC    A E G+       K        +   LI+M+A+CGDV  A  +F  M+G 
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--- 233
            +VS+ ++I          EA+ LF EM   G+ P  V  + +LSAC+  G ++ GR   
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           +Y   M+ D      ++    ++DM  + G +++A    Q M    +   W  ++ A   
Sbjct: 263 DYIRKMRLD----SLVKVNTALIDMYAKCGSLEDAIGVFQDME-SRDKQAWSVMMVAYAN 317

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
            G  + A S+ + +   + M   +   L  +YA
Sbjct: 318 HGYGREAISMFEEM-KKQGMKPDDVTFLGVLYA 349


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/475 (46%), Positives = 315/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ F    VL+ACA +GDL  G+ +   + +     ++ V  +LV MY  C G
Sbjct: 196 LLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKC-G 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M E+D V WSAMI GYA  GL  +AI+LF +M+   V PD   MV  LS
Sbjct: 255 SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALS 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGALE+G W +  +  +    +  L  +LID +AKCG +++AL +++ M  +  V 
Sbjct: 315 SCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVV 374

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + +VI+GLAM+G+   A  +F +M + G+PP++  FVGLL  C+H GLVD GR YF+SM 
Sbjct: 375 FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMS 434

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +DF + P IEHYGCMVD+L R+G + EAH  I+ MP++AN I+W +L+  C    E +LA
Sbjct: 435 HDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLA 494

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+LI  EP +  +YVLLS+IY+   RW++  KIR  ++++GM+K+PG + +E+D  
Sbjct: 495 EHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGV 554

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GD SH  S++IYE L+ + + +K+AGY PTT  VL D+ EE+KE  L  HSEKL
Sbjct: 555 VHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKL 614

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+ T     IR+VKNLRVC DCH A K ISK+  REIV+RD +RFH F D
Sbjct: 615 AVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSD 669



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 3/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P+ FT+ FVLKACA +   +LG  +H  V K  F  D+ V+  +V  Y  C G
Sbjct: 95  MHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKC-G 153

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVFD+M  ++ VSW+ MI G    G   +A+DLFR +  SG+ PD   +V VL 
Sbjct: 154 FLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLR 213

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG LE G+W++  + +  ++R+V +  +L+DM+ KCG +++A  +F  M  + IV 
Sbjct: 214 ACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVC 273

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G A +G   EA+ LF EM +  V PD  A VG LS+C+  G ++ G  +   + 
Sbjct: 274 WSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG-NWAKGLM 332

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N    +        ++D   + G ++EA   + KM  E + +++  +IS     G++  A
Sbjct: 333 NYEEFLSNPVLGTSLIDFYAKCGSMEEALG-VYKMMKEKDRVVFNAVISGLAMYGQVGAA 391



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           +  ++  ++ MI G        +A+ L+  M  + + PD  T   VL AC  L    +G 
Sbjct: 65  TNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGV 124

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S + K   +  V +   ++  ++KCG +  A K+F  M  + +VSWT +I G    G
Sbjct: 125 MIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFG 184

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
           +  EAV LF  +LE+G+ PD    V +L AC+  G ++ GR + D    + G+   +   
Sbjct: 185 KFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR-WIDRCMRECGLSRNVFVA 243

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +VDM  + G ++EA  F+    +E + + W  +I    + G
Sbjct: 244 TSLVDMYTKCGSMEEA-RFVFDGMVEKDIVCWSAMIQGYASNG 285


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/505 (43%), Positives = 321/505 (63%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML+ G  P+K T    + ACA +GDL++GKS H  VL+       ++ N ++ MY  C  
Sbjct: 323 MLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGK 382

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G +EL  ++FDEM ERD VSW+ MIG   ++
Sbjct: 383 REAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQV 442

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            +  +AI+LFR+MQ  G+  D +TMV + SAC  LGAL++ KWV ++IEK  ++  + L 
Sbjct: 443 SMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLG 502

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DMF++CGD   A+ +F+ M  R + +WT+ I  +AM G    A+ LF EMLE  V 
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PDDV FV LL+ACSH G VD+GR+ F SM+   GI P I HYGCMVD+L R+G ++EA +
Sbjct: 563 PDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVD 622

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            IQ MPIE N ++W +L++AC     ++LA    ++L    P     +VLLS+IYA   +
Sbjct: 623 LIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGK 682

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R  M ++G++K+PGS+ IE+   I+EF  GD+SH ++  I  ML+E+  ++ +
Sbjct: 683 WTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSE 742

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGYVP T+ VLLD++E++KE  L++HSEKLA+A+ L+ T  G PIR+VKNLR+C+DCHS 
Sbjct: 743 AGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSF 802

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K +SK+YNREI VRD +R+H FK+
Sbjct: 803 AKLVSKLYNREITVRDNNRYHFFKE 827



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 180/319 (56%), Gaps = 25/319 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+K+T+PF+L AC+ I  L+ G  VHGAVLK     DI V N+L+H Y  C G
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAEC-G 179

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++LGRK+FD M ER+ VSW+++I GY+   LS +A+ LF QM  +GV P+ +TMV V+S
Sbjct: 180 KVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVIS 239

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L  LE+GK V S+I +  +  S  + NAL+DM+ KCGD+  A ++F     + +V 
Sbjct: 240 ACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVM 299

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-----------SHCGLV 229
           + ++++    H    + + + +EML+ G  PD V  +  ++AC           SH  ++
Sbjct: 300 YNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVL 359

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             G E +D++ N             ++DM  + G+ + A +  + MP     + W +LI+
Sbjct: 360 RNGLEGWDNISN------------AIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIA 406

Query: 290 ACCARGELKLAESITKRLI 308
                G+++LA  I   ++
Sbjct: 407 GLVRDGDMELAWRIFDEML 425



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 149/309 (48%), Gaps = 39/309 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV PN  T   V+ ACA + DL LGK V   + +        + N LV MY  C G
Sbjct: 222 MGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKC-G 280

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R++FDE + ++ V ++ ++  Y     ++D + +  +M   G  PD++TM++ ++
Sbjct: 281 DICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIA 340

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG L VGK   +++ +  +     + NA+IDM+ KCG  + A K+F  M  +T+V+
Sbjct: 341 ACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVT 400

Query: 181 WTSVIAGLAMHG--------------RGL-----------------EAVALFEEMLEAGV 209
           W S+IAGL   G              R L                 EA+ LF EM   G+
Sbjct: 401 WNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGI 460

Query: 210 PPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           P D V  VG+ SAC + G +D  +    Y +  KND  +   ++    +VDM  R G   
Sbjct: 461 PGDRVTMVGIASACGYLGALDLAKWVCTYIE--KNDIHV--DLQLGTALVDMFSRCGDPS 516

Query: 267 EAHEFIQKM 275
            A    ++M
Sbjct: 517 SAMHVFKRM 525



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 114/210 (54%), Gaps = 2/210 (0%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++ +I GYA  GL   AI L+ QM + G+ PD+ T   +LSAC+ + AL  G  V   + 
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K  +   + + N+LI  +A+CG VD   KLF  M  R +VSWTS+I G +      EAV+
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF +M EAGV P+ V  V ++SAC+    ++ G++   S  ++ G+         +VDM 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVC-SYISELGMELSTIMVNALVDMY 276

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            + G +  A +   +     N +++ T++S
Sbjct: 277 MKCGDICAARQIFDECA-NKNLVMYNTIMS 305



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 64/270 (23%)

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------- 224
           N  ++  +  +I G A  G G +A+ L+ +ML  G+ PD   F  LLSACS         
Sbjct: 91  NMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGV 150

Query: 225 --------------------------HCGLVDKGREYFDSM--KNDFGIIPKIEHYGCMV 256
                                      CG VD GR+ FD M  +N       I  Y    
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGY---- 206

Query: 257 DMLCRSGR--VKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
                SGR   KEA     +M    +E NP+    +ISAC    +L+L + +   +  +E
Sbjct: 207 -----SGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI--SE 259

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSH 371
              E + ++++ +    ++       R++ D+   K +           +Y  +  +  H
Sbjct: 260 LGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLV----------MYNTIMSNYVH 309

Query: 372 HQ-SKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           H+ + ++  +LDEM +K  +   V   S +
Sbjct: 310 HEWASDVLVILDEMLQKGPRPDKVTMLSTI 339


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/476 (46%), Positives = 317/476 (66%), Gaps = 8/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V  + FT+P +LK+      LN    +H  VLK  F  +I+VQN L++ YG+  G
Sbjct: 89  MHRTNVPFDHFTFPLILKS----SKLN-PHCIHTLVLKLGFHSNIYVQNALINSYGT-SG 142

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTV 118
            +    K+FDEM  RD +SWS++I  +A+ GL  +A+ LF+QMQ+  S + PD + M++V
Sbjct: 143 SLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSV 202

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +SA + LGALE+G WV +FI +  VN +V L +ALIDM+++CGD+D+++K+F  M  R +
Sbjct: 203 ISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNV 262

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+WT++I GLA+HGRG EA+  F +M+E+G+ PD +AF+G+L ACSH GLV++GR  F S
Sbjct: 263 VTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSS 322

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M +++GI P +EHYGCMVD+L R+G V EA +F++ M +  N +IWRTL+ AC     L 
Sbjct: 323 MWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLV 382

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE   +R+   +P H+ +YVLLS+ Y  +  W KK  +R  M +  + K PG +L+ +D
Sbjct: 383 LAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHID 442

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
              +EFV GD SH Q +EI   L  +   +K  GY P+T  VL DI EE+KE +L  HSE
Sbjct: 443 QVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLGYHSE 502

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF LL       IR++KNLR+C DCHS  K +S  ++R+IV+RDR RFHHF+
Sbjct: 503 KLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFR 558


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/501 (42%), Positives = 325/501 (64%), Gaps = 30/501 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SC 58
           G+ P+ +T  F+++AC G+G    G  VHG  ++  F +D HVQ  L+ +Y       SC
Sbjct: 111 GLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSC 170

Query: 59  E------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                    G +   RK+F+ M E+D ++W+AMI GYA++G S 
Sbjct: 171 HKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESR 230

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A++LF  MQ+ GV  + ++M++VLSACT LGAL+ G+W  S+IE+  +  +V L   L+
Sbjct: 231 EALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLV 290

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           D++AKCGD+DKA+++F  M  + + +W+S + GLAM+G G + + LF  M + GV P+ V
Sbjct: 291 DLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAV 350

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            FV +L  CS  G VD+G+++FDSM+N+FGI P+++HYGC+VD+  R+GR+++A   IQ+
Sbjct: 351 TFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQ 410

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP++A+  +W +L+ A      L+L    +K+++  E  +   YVLLS+IYA    W+  
Sbjct: 411 MPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNV 470

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
           + +R+ M  +G++K PG +++E++ E++EF  GDKSH +  EI  +  ++ R+++ AGY 
Sbjct: 471 SHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYK 530

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
             T+ V+ DI+EE+KEDAL  HSEK AIAF ++      PIRIVKNLRVC DCH  +  I
Sbjct: 531 ADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMI 590

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SKI+NREI+VRDR+RFHHFKD
Sbjct: 591 SKIFNREIIVRDRNRFHHFKD 611



 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 176/472 (37%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 3    EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
            E G  PN+ T+  ++ AC   G+   G  +HG V+K    +++ V N L+++YG   G +
Sbjct: 630  EVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKT-GDL 688

Query: 63   ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
                K+F+++S ++ VSW+ MI  + + GL+ + +  F   +  G+ PD+ T + VL  C
Sbjct: 689  ISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVC 748

Query: 123  TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             D+G + + + +   I     N +  +  AL+D++AK G ++ +  +F  +     ++WT
Sbjct: 749  EDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWT 808

Query: 183  SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            +++A  A HG G +A+  FE M+  G+ PD V F  LL+ACSH GLV++GR YF++M   
Sbjct: 809  AMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKR 868

Query: 243  FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            + I P+++HY CMVD++ RSG +++A+  I++MP+E +  +W  L+ AC    + +L   
Sbjct: 869  YRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTK 928

Query: 303  ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
              KRL   EP    NY++LS+IY+    W+  ++IR +M ++G+ +  G + IE  N+I+
Sbjct: 929  AAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIH 988

Query: 363  EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
            +FV GD SH +S++I + L E+ +KMK + G+   T  VL D++E+ KE+ +N+HSEK+A
Sbjct: 989  KFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIA 1048

Query: 422  IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            +AF LL   P  PI I KNLR+C DCH   K IS I  R I++RD  RFHHF
Sbjct: 1049 MAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHF 1100



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 37/268 (13%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVL 119
           ++   ++ D   +    + ++MI  + +  +   + D + ++  SG  + PD  T+  ++
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLV 123

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF---------------------- 157
            ACT LG  E G  V     ++  +    +   LI ++                      
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFV 183

Query: 158 ---------AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                    A+CGDV  A KLF  M  +  ++W ++I+G A  G   EA+ LF  M   G
Sbjct: 184 CRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEG 243

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           V  + V+ + +LSAC+  G +D+GR     + +N   I  ++     +VD+  + G + +
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLG--TTLVDLYAKCGDMDK 301

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A E    M  E N   W + ++     G
Sbjct: 302 AMEVFWGME-EKNVYTWSSALNGLAMNG 328


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 318/475 (66%), Gaps = 5/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+  + FT+PFVLKAC+    L +   +H  ++K+    DI VQN L+ +YG C G
Sbjct: 78  MRSNGIPLDNFTFPFVLKACS---RLQINLHLHSLIVKYGLDSDIFVQNALICVYGYC-G 133

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            +E+  KVFDEMSERDSVSWS +I  +   G +++A+DLF +MQ+   V PDE+TM++V+
Sbjct: 134 SLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVI 193

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SA + LG LE+G+WV +FI +  +  SV L  ALIDMF++CG +D+++ +F  M  R ++
Sbjct: 194 SAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVL 253

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WT++I GL +HGR  EA+A+F  M ++GV PD V F G+L ACSH GLV +G + F+S+
Sbjct: 254 TWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESI 313

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  + + P ++HYGCMVD+L R+G + EA++F+++MP++ N IIWRTL+ AC     L L
Sbjct: 314 RKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGL 373

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE +  ++         + VLLS++Y    RW +K  IR  M ++ + K PG + I +D 
Sbjct: 374 AEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQ 433

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+EFV GD SH QS++I + L  +   ++  GY+  T  VL DI EE++E +L+ HSEK
Sbjct: 434 TIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEK 493

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AFA+L       IRI+KNLR+C DCHS  K IS  + R+I++RDR+RFHHF+
Sbjct: 494 LAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFE 548


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/471 (44%), Positives = 311/471 (66%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN  T   VL ACA +  L  G+ +HG  ++  F  +  V N LV+MY  C G +  
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKC-GNVNS 375

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+F+ M +++ V+W+A+I GY++ G   +A+ LF +MQ  G+ PD   +V+VL AC  
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             ALE GK +  +  +     +V +   L+D++AKCG+V+ A KLF  M  + +VSWT++
Sbjct: 436 FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTM 495

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I    +HG G +A+ALF +M E G   D +AF  +L+ACSH GLVD+G +YF  MK+D+G
Sbjct: 496 ILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYG 555

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + PK+EHY C+VD+L R+G + EA+  I+ M +E +  +W  L+ AC     ++L E   
Sbjct: 556 LAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAA 615

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           K L   +P +   YVLLS+IYA+  RWE   K+R++M ++G+KK PG +++ +  ++  F
Sbjct: 616 KHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTF 675

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GD++H QS++IY ML+ +  +M+KAGYVP T+  L D+ EE KE+ L+ HSEKLAI+F
Sbjct: 676 LVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISF 735

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            ++ T PG PIRI+KNLRVC+DCH+ATKFISKI  REI+VRD +RFHH K+
Sbjct: 736 GIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKN 786



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 169/296 (57%), Gaps = 5/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++P+K  +  V+KAC    DL  G+ VH  ++   F  D+ V   L  MY  C G
Sbjct: 111 MQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC-G 169

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD M +RD VSW+A+I GY++ G   +A+ LF +MQ++G+ P+  T+V+V+ 
Sbjct: 170 SLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMP 229

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L ALE GK +  +  +  +   V + N L++M+AKCG+V+ A KLF  M  R + S
Sbjct: 230 VCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           W ++I G +++ +  EA+A F  M   G+ P+ +  V +L AC+H   +++G++    ++
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAI 349

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           ++ F     + +   +V+M  + G V  A++  ++MP + N + W  +IS     G
Sbjct: 350 RSGFESNDVVGN--ALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHG 402



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 3/286 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN  T   V+  CA +  L  GK +H   ++     D+ V N LV+MY  C G +  
Sbjct: 216 GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKC-GNVNT 274

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+F+ M  RD  SW+A+IGGY+      +A+  F +MQ+ G+ P+ ITMV+VL AC  
Sbjct: 275 AHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L ALE G+ +  +  +     +  + NAL++M+AKCG+V+ A KLF  M  + +V+W ++
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+G + HG   EA+ALF EM   G+ PD  A V +L AC+H   +++G++         G
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS-G 453

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
               +     +VD+  + G V  A +  ++MP E + + W T+I A
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILA 498



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 2/213 (0%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           ++V W   I GY + G    A+ L+ QMQ +G+ PD++  ++V+ AC     L+ G+ V 
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             I  +     V +  AL  M+ KCG ++ A ++F  M  R +VSW ++IAG + +G+  
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA+ALF EM   G+ P+    V ++  C+H   +++G++         GI   +     +
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ-IHCYAIRSGIESDVLVVNGL 262

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V+M  + G V  AH+  ++MPI  +   W  +I
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIR-DVASWNAII 294



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 23/232 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ F    VL ACA    L  GK +HG  ++  F  ++ V   LV +Y  C G
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKC-G 472

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +K+F+ M E+D VSW+ MI  Y   G   DA+ LF +MQ +G   D I    +L+
Sbjct: 473 NVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLC------NALIDMFAKCGDVDKALKLFRSMN 174
           AC+  G ++ G  ++ F   Q +    GL         L+D+  + G +D+A  + ++M+
Sbjct: 533 ACSHAGLVDQG--LQYF---QCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMS 587

Query: 175 GRTIVS-WTSVIAGLAMHGR---GLEAVA-LFEEMLEAGVPPDDVAFVGLLS 221
                + W +++    +H     G +A   LFE      + PD+  +  LLS
Sbjct: 588 LEPDANVWGALLGACRIHCNIELGEQAAKHLFE------LDPDNAGYYVLLS 633


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 316/515 (61%), Gaps = 46/515 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---------- 55
           V PN+FT+P VLKACA    L  GK +HG ++KF F +D  V + LV MY          
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177

Query: 56  -----------GSCE-------------------------GGIELGRKVFDEMSERDSVS 79
                      GSC+                         G I+  + +FDEM  R  VS
Sbjct: 178 SLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVS 237

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ MI GYA+ G   +AI+LF++MQ S + P+ +T+V+VL A   +GALE+GKW+  +  
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAG 297

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K  V     L +AL+DM++KCG +DKAL++F ++  R  ++W+++I   AMHGR  +A+ 
Sbjct: 298 KNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
            F  M +AGV P+DVA++G+LSACSH GLV++GR +F  M    G+ P+IEHYGCMVD+L
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            R+G ++EA E I+ MPIE + +IW+ L+ AC     LK+ E + + L+   P    +YV
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYV 477

Query: 320 LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE 379
            LS++YA L  WE   ++R  M    ++K PG + IE+   I+EF+  D SH ++KEI  
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQA 537

Query: 380 MLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVK 439
           ML EM  K++  GY P T EV L+ +E+++  AL  HSEK+A+AF L+ T P  P++IVK
Sbjct: 538 MLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVK 597

Query: 440 NLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           NLR+C DCH++ K IS IY R+I+VRDR RFH F+
Sbjct: 598 NLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFE 632



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    + PN  T   VL A A IG L LGK +H    K +   D  + + LV MY  C G
Sbjct: 261 MQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKC-G 319

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   +VF+ + +R++++WSA+IG +A  G + DAI  F  M  +GV P+++  + +LS
Sbjct: 320 SIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G +E G+   S + K + +   +     ++D+  + G +++A +L R+M      
Sbjct: 380 ACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD 439

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           V W +++    MH + L+      E L    P D  ++V L
Sbjct: 440 VIWKALLGACKMH-KNLKMGERVAETLMELAPHDSGSYVAL 479


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/475 (46%), Positives = 307/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++ + P+  T+P VLKA A + D  +GK +HG V++  F  D++    LVH+Y +C  
Sbjct: 80  MHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLS 139

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    ++FDEM ER++V+W+A+I GY        AID FR M   G  P E T+V VLS
Sbjct: 140 -ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLS 198

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ LGA   GKW+  FI    +  +V +  ALIDM+AKCG V +  K+F  +  + + +
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G AM+G+G  A+  F  ML     PD+V F+G+L AC H GLV +GR  F SMK
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FG+ P+IEHYGCMVD+L R+G ++EA E IQ M IE +PIIWR L+ AC   G  KL 
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I KRLI  EP +  NYVLLS+IY++  RW +  K+R +M+ RG++K+PG + IE++N 
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNV 438

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +YEFV  +    + + IY+ LD + +K+K+ GYV  T   L DI +E+KE ++  HSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF LL +P    +RIVKNLR+C DCH   K +S +Y R IVVRDR+RFHHF +
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYE 553



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 2/233 (0%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +S   ++MI  Y  L    +++ +F  M    + PD  T   VL A   L    VGK + 
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH 112

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             + +      V    AL+ ++  C  +  A +LF  M  R  V+W ++I G   + + +
Sbjct: 113 GIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFV 172

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +A+  F  ML  G  P +   V +LSACSH G  ++G+   + + ++  +   +     +
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN-RLRLNVFVGTAL 231

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +DM  + G V E  +  +++  E N   W  LIS     G+   A     R++
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRML 283


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/514 (42%), Positives = 324/514 (63%), Gaps = 44/514 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
           V PN+FT+P VLKACA  G +  GK +HG  LK+ FG D  V + LV MY  C       
Sbjct: 124 VEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDAR 183

Query: 59  --------------------------------EGGIELG-----RKVFDEMSERDSVSWS 81
                                           +G + LG     R +FD+M +R  VSW+
Sbjct: 184 VLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 243

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
            MI GY+  G   DA+++FR+M+   + P+ +T+V+VL A + LG+LE+G+W+  + E  
Sbjct: 244 TMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS 303

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
            +     L +ALIDM++KCG ++KA+ +F  +    +++W+++I G A+HG+  +A+  F
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            +M +AGV P DVA++ LL+ACSH GLV++GR YF  M +  G+ P+IEHYGCMVD+L R
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           SG + EA EFI  MPI+ + +IW+ L+ AC  +G +++ + +   L+   P     YV L
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVAL 483

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S++YA    W + +++R  M ++ ++K PG +LI++D  ++EFV  D SH ++KEI  ML
Sbjct: 484 SNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
            E+  K++ AGY P T++VLL++ EEDKE+ L+ HSEK+A AF L+ T PG PIRIVKNL
Sbjct: 544 VEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNL 603

Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           R+C DCHS+ K ISK+Y R+I VRDR RFHHF+D
Sbjct: 604 RICEDCHSSIKLISKVYKRKITVRDRKRFHHFQD 637



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 50/283 (17%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLG--LSTDAIDLFRQMQISG-VCPDEITMVTV 118
           ++   K+F++M +R+  SW+ +I G++      +  AI LF +M     V P+  T  +V
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 119 LSACTDLGALEVGKWV-------------------------------------ESFIEKQ 141
           L AC   G ++ GK +                                     ++ IEK 
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 142 MV--------NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           MV        +  + L N +ID + + GD   A  LF  M  R++VSW ++I+G +++G 
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +AV +F EM +  + P+ V  V +L A S  G ++ G E+      D GI        
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGS 313

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            ++DM  + G +++A    +++P E N I W  +I+     G+
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQ 355



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAM--HGRGLEAVALFEEML-EAGVPPDDVAFVG 218
           D+D A K+F  M  R   SW ++I G +     + L A+ LF EM+ +  V P+   F  
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 219 LLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           +L AC+  G + +G++    ++K  FG    +     +V M    G +K+A     K  I
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFV--MSNLVRMYVMCGFMKDARVLFYKNII 191

Query: 278 EANPII-------------WRTLISACCARGELKLAESITKRL 307
           E + ++             W  +I      G+ K A  +  ++
Sbjct: 192 EKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/475 (46%), Positives = 306/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++ + P+  T+P VLKA A + D  +GK +HG V++  F  D++    LVH+Y +C  
Sbjct: 80  MHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLS 139

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    ++FDEM ER++V+W+A+I GY        AID FR M   G  P E T+V VLS
Sbjct: 140 -ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLS 198

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ LGA   GKW+  FI    +  +V +  ALIDM+AKCG V +  K+F  +  + + +
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G AM+G+G  A+  F  ML     PD+V F+G+L AC H GLV +GR  F SMK
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FG+ P+IEHYGCMVD+L R+G ++EA E IQ M IE +PIIWR L+ AC   G  KL 
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I KRLI  EP +  NYVLLS+IY++  RW +  K+R +M  RG++K+PG + IE++N 
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNV 438

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +YEFV  +    + + IY+ LD + +K+K+ GYV  T   L DI +E+KE ++  HSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF LL +P    +RIVKNLR+C DCH   K +S +Y R IVVRDR+RFHHF +
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYE 553



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 2/233 (0%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +S   ++MI  Y  L    +++ +F  M    + PD  T   VL A   L    VGK + 
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH 112

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             + +      V    AL+ ++  C  +  A +LF  M  R  V+W ++I G   + + +
Sbjct: 113 GIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFV 172

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +A+  F  ML  G  P +   V +LSACSH G  ++G+   + + ++  +   +     +
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN-RLRLNVFVGTAL 231

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +DM  + G V E  +  +++  E N   W  LIS     G+   A     R++
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFSRML 283


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/504 (43%), Positives = 315/504 (62%), Gaps = 66/504 (13%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E+ +SP+ +T  FVLKAC+ + D+  GK VHG V K     ++ +QN +VH+Y  C G I
Sbjct: 106 EFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALC-GEI 164

Query: 63  ELGRKVFDEMSERDSV-------------------------------SWSAMIGGYARLG 91
            + RKVFD+M +RD +                               SW++MIGGYA+ G
Sbjct: 165 GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
            S +AIDLF +M+ +G+ P+E+T+V VL AC D+G L +G+ +  F  +    +++ +CN
Sbjct: 225 KSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCN 284

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
            LIDM+ KCG ++ A ++F +M  RT+VSW+++IAGLA HGR  +A+ALF +M+  GV P
Sbjct: 285 TLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP 344

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V F+G+L ACSH G+V+KGR+YF SM  D+GI+P+IEHYGCMVD+  R+G ++EAHEF
Sbjct: 345 NAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEF 404

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I  MPI  N ++W  L+  C     +KLAE  T+ L   +P+++  YV+LS+IYA+  RW
Sbjct: 405 IMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRW 464

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E   ++R++M  RG                                    +++ ++MK  
Sbjct: 465 EDVARVRKLMRDRG----------------------------------TWEKLLQRMKLK 490

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP TS VLLD+ E+ KE  L +HSEKLA+ F L+KT PGT IRI+KNLRVC DCH+A 
Sbjct: 491 GYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAAL 550

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           K IS +  REIVVRDR+RFH FK+
Sbjct: 551 KIISVVSTREIVVRDRNRFHCFKN 574



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 9/196 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ PN+ T   VL ACA +G+L LG+ +H    +  +  +I V NTL+ MY  C G
Sbjct: 236 MEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC-G 294

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++FD M ER  VSWSAMI G A  G + DA+ LF +M  +GV P+ +T + +L 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+ +G +E G K+  S      +   +     ++D+F++ G + +A +   +M    NG
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNG 414

Query: 176 RTIVSWTSVIAGLAMH 191
              V W +++ G  +H
Sbjct: 415 ---VVWGALLGGCKVH 427



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +F  +   +   W+  +  +A      DAI LF +++   + PD  T   VL AC+ 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC------------------------ 160
           L  +  GK V  ++EK  +  ++ L N ++ ++A C                        
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 161 -------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                  GD + A KLF  M  R + SWTS+I G A  G+  EA+ LF EM +AG+ P++
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V  V +L AC+  G +  GR   D   N  G    I     ++DM  + G +++A     
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFD 304

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
            M  E   + W  +I+   A G  + A ++  ++I  
Sbjct: 305 NME-ERTVVSWSAMIAGLAAHGRAEDALALFNKMINT 340


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/476 (44%), Positives = 311/476 (65%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V+PNK T+  +L+ C     L  GK VH  +++  +G ++ V N+L+ MY  C G
Sbjct: 240 MQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC-G 298

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+E  RK+F ++  RD V+W+AM+ GYA+LG   +AI+LFR+MQ  G+ PD++T  +VL+
Sbjct: 299 GLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLT 358

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+    L+ GK +   +     N  V L +AL+ M+AKCG +D A  +F  M+ R +V+
Sbjct: 359 SCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVA 418

Query: 181 WTSVIAGL-AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           WT++I G  A HGR  EA+  F++M + G+ PD V F  +LSAC+H GLV++GR++F SM
Sbjct: 419 WTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSM 478

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+GI P +EHY C VD+L R+G ++EA   I  MP    P +W  L+SAC    +++ 
Sbjct: 479 YLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVER 538

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + ++  +P  +  YV LS IYA   R+E   K+R+VM+KR + K PG + IE+D 
Sbjct: 539 GERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 598

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ F   DKSH +S++IY  L ++  ++K+ GYVP T  VL D++EE KE  L  HSE+
Sbjct: 599 KVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSER 658

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI + L+KTPPG PIRIVKNLRVC DCH+ATKFISK+  REI+ RD  RFHHF D
Sbjct: 659 LAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFAD 714



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 154/290 (53%), Gaps = 3/290 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+K T+  +L A      L LG+ VH  +++     +  V  +LV MY  C G I  
Sbjct: 143 GCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKC-GDISK 201

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD + E++ V+W+ +I GYA+ G    A++L   MQ + V P++IT  ++L  CT 
Sbjct: 202 ARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTT 261

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             ALE GK V  +I +    R + + N+LI M+ KCG +++A KLF  +  R +V+WT++
Sbjct: 262 PAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAM 321

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + G A  G   EA+ LF  M + G+ PD + F  +L++CS    + +G+     + +  G
Sbjct: 322 VTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-G 380

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
               +     +V M  + G + +A     +M  E N + W  +I+ CCA+
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQ 429



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 157/292 (53%), Gaps = 3/292 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ CA +  L  G+ VH A+LK     + +++NTL+ MY  C G +   R+VFD + +R
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC-GSLTDARRVFDSIRDR 111

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW+AMI  +     + +A   +  M+++G  PD++T V++L+A T+   L++G+ V 
Sbjct: 112 NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             I +  +     +  +L+ M+AKCGD+ KA  +F  +  + +V+WT +IAG A  G+  
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVD 231

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
            A+ L E M +A V P+ + F  +L  C+    ++ G++    +    G   ++     +
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS-GYGRELWVVNSL 290

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           + M C+ G ++EA +    +P   + + W  +++     G    A ++ +R+
Sbjct: 291 ITMYCKCGGLEEARKLFSDLP-HRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/475 (45%), Positives = 305/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ F+   VL ACA +GD   G+ +   +     G ++ V  +L+ MY  C G
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKC-G 264

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  M E+D VSWS MI GYA  GL   A+DLF QMQ   + PD  TMV VLS
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL++G W  S +++     +  L  ALIDM++KCG V +A ++F +M  +  V 
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV 384

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ GL+M+G      +LF  + + G+ PD+  F+GLL  C+H G V++GR++F++MK
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             F + P IEHYGCMVD+L R+G + EAH+ I  MP++ N ++W  L+  C    +  LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+LI  EP +  NYV LS+IY+   RWE+  KIR  M ++ ++KI   + IE+D  
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GDKSH  S++IY  LDE+GR++K  G+VPTT  VL DI EE+KE  L  HSEKL
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ +PP   IR+VKNLRVC DCH A K ISKI  REI++RD +RFH F D
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFID 679



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 169/300 (56%), Gaps = 5/300 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT PFVLKACA   D+ LG  +H  ++K  +  D+ V+ +L+ +Y  C+   + 
Sbjct: 109 GFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN-FDD 167

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVFD++ +++ VSW+A+I GY   G   +AI  F+++   G+ PD  ++V VL+AC  
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG    G+W++ +I    + R+V +  +L+DM+ KCG++++A  +F +M  + IVSW+++
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           I G A +G   +A+ LF +M    + PD    VG+LSAC+  G +D G      M +N+F
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
              P +     ++DM  + G V +A E    M  + + ++W  ++      G  K   S+
Sbjct: 348 LSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSL 404



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 9/277 (3%)

Query: 22  GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---GGIELGRKVFDEMSERDSV 78
           G+   N  K +H  +L+     D    N L+++   C    G     + VF ++ E +  
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQD----NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIF 80

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
            W+ MI G        DAI L+  M+  G  P+  T+  VL AC     + +G  + S +
Sbjct: 81  LWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL 140

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K   +  V +  +L+ ++ KC + D ALK+F  +  + +VSWT++I G    G   EA+
Sbjct: 141 VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
             F+++LE G+ PD  + V +L+AC+  G    G E+ D   +D G+   +     ++DM
Sbjct: 201 GAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDM 259

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             + G ++ A+     MP E + + W T+I      G
Sbjct: 260 YVKCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNG 295


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 317/515 (61%), Gaps = 46/515 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---------- 55
           V PN+FT+P VLKACA    L  GK +HG ++KF F +D  V + LV MY          
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177

Query: 56  -----------GSCE-------------------------GGIELGRKVFDEMSERDSVS 79
                      GSC+                         G I+  + +FDEM +R  VS
Sbjct: 178 SLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVS 237

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ MI GYA+ G   +AI+LF++MQ S + P+ +T+V+VL A   +GALE+GKW+  +  
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAG 297

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K  +     L +AL+DM++KCG +D+AL++F ++  R  ++W+++I   AMHGR  +A+ 
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
            F  M +AGV P+DVA++G+LSACSH GLV++GR +F  M    G+ P+IEHYGCMVD+L
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            R+G ++EA E I+ MPIE + +IW+ L+ AC     LK+ E + + L+   P    +YV
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYV 477

Query: 320 LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE 379
            LS++YA L  WE   ++R  M    ++K PG + IE+   I+EF+  D SH ++KEI  
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQA 537

Query: 380 MLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVK 439
           ML EM  K++  GY P T EV L+ +E+++  AL  HSEK+A+AF L+ T P  P++IVK
Sbjct: 538 MLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVK 597

Query: 440 NLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           NLR+C DCH++ K IS IY R+I+VRDR RFH F+
Sbjct: 598 NLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFE 632



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    + PN  T   VL A A IG L LGK +H    K +   D  + + LV MY  C G
Sbjct: 261 MQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKC-G 319

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   +VF+ + +R++++WSA+IG +A  G + DAI  F  M  +GV P+++  + +LS
Sbjct: 320 SIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G +E G+   S + K + +   +     ++D+  + G +++A +L R+M      
Sbjct: 380 ACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD 439

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           V W +++    MH + L+      E L    P D  ++V L
Sbjct: 440 VIWKALLGACKMH-KNLKMGERVAETLMELAPHDSGSYVAL 479


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/475 (45%), Positives = 305/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ F+   VL ACA +GD   G+ +   +     G ++ V  +L+ MY  C G
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKC-G 264

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F  M E+D VSWS MI GYA  GL   A+DLF QMQ   + PD  TMV VLS
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL++G W  S +++     +  L  ALIDM++KCG V +A ++F +M  +  V 
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV 384

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ GL+M+G      +LF  + + G+ PD+  F+GLL  C+H G V++GR++F++MK
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             F + P IEHYGCMVD+L R+G + EAH+ I  MP++ N ++W  L+  C    +  LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+LI  EP +  NYV LS+IY+   RWE+  KIR  M ++ ++KI   + IE+D  
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GDKSH  S++IY  LDE+GR++K  G+VPTT  VL DI EE+KE  L  HSEKL
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ +PP   IR+VKNLRVC DCH A K ISKI  REI++RD +RFH F D
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFID 679



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 168/300 (56%), Gaps = 5/300 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT PFVLKACA   D+ LG  +H  ++K  +  D+ V+ +L+ +Y  C+   + 
Sbjct: 109 GFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDN-FDD 167

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVFD++ +++ VSW+A+I GY   G   +AI  F+++   G+ PD  ++V VL+AC  
Sbjct: 168 ALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG    G+W++ +I    + R+V +  +L+DM+ KCG++++A  +F +M  + IVSW+++
Sbjct: 228 LGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM 287

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           I G A +G   +A+ LF +M    + PD    VG+LSAC+  G +D G      M +N+F
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
              P +     ++DM  + G V +A E    M    + ++W  ++      G  K   S+
Sbjct: 348 LSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSL 404



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 9/277 (3%)

Query: 22  GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---GGIELGRKVFDEMSERDSV 78
           G+   N  K +H  +L+     D    N L+++   C    G     + VF ++ E +  
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQD----NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIF 80

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
            W+ MI G        DAI L+  M+  G  P+  T+  VL AC     + +G  + S +
Sbjct: 81  LWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL 140

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K   +  V +  +L+ ++ KC + D ALK+F  +  + +VSWT++I G    G   EA+
Sbjct: 141 VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
             F+++LE G+ PD  + V +L+AC+  G    G E+ D   +D G+   +     ++DM
Sbjct: 201 GAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDM 259

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             + G ++ A+     MP E + + W T+I      G
Sbjct: 260 YVKCGNLERANLIFSAMP-EKDIVSWSTMIQGYAFNG 295


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/506 (44%), Positives = 314/506 (62%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--- 57
           ML+ G+ P+  TYPFV+KAC        G  VH  V+K  F  D ++ ++L+H+Y +   
Sbjct: 157 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 216

Query: 58  ----------CEG---------------GIELG--RKVFDEMSERDSVSWSAMIGGYARL 90
                     C                  +E+G  R VFD M  RD +SW+ MI GYA  
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A+ LF QM+  GV P E T+V++LSAC  LGAL+ G  + ++I    +  +  + 
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 336

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DM+AKCG +  A ++F +M  + +++W ++IAG+A+HG   EA  LF+EM EAGV 
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+D+ FV +LSACSH G+VD+G++  D M + +GI PK+EHYGC++D+L R+G ++EA E
Sbjct: 397 PNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAME 456

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I  MP+E NP     L+  C   G  +L E + KRLI  +P H   Y+LLS+IYA   +
Sbjct: 457 LIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKK 516

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+   K+R +M   G+ K+PG ++IEL   ++ FV GD SH +S +IYE L+E+  ++K 
Sbjct: 517 WDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKS 576

Query: 391 A-GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           A GY   T  VLLD+ EEDKE AL  HSEKLAIA+ LL       IRIVKNLRVC DCH 
Sbjct: 577 AIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHH 636

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             K ISK+Y REI+VRDR+RFHHF+D
Sbjct: 637 VIKLISKVYGREIIVRDRNRFHHFED 662



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 35/284 (12%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   + +F  +       ++++I   +      +A+ L+  M  SG+ PD +T   V+ A
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175

Query: 122 CTDLGALEVGKWVESFI---------------------------EKQMVN----RSVGLC 150
           C +      G  V + +                            KQ+ N    R V   
Sbjct: 176 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 235

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NA+ID + K  ++  A  +F  M  R ++SW ++I G A+ G+  EA+ALF++M   GV 
Sbjct: 236 NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVK 295

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P +   V LLSAC+H G +DKG  +  +  ND  I         +VDM  + G++  A +
Sbjct: 296 PTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 354

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
               M    + + W T+I+     G +K A+ + K +   G EP
Sbjct: 355 VFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP 397


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/502 (43%), Positives = 326/502 (64%), Gaps = 32/502 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
           V PNKFT+P VLKACA +  +  GK +HG V+K     D  V++ LV +Y  C       
Sbjct: 119 VEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAH 178

Query: 59  -------------------EGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLST 94
                              +G + +G     R++FD M  +  VSW+ MI G A+ G   
Sbjct: 179 VLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFK 238

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +AI++F  MQ+  V P+ +T+V+VL A + LGA+E+GKWV  F EK  +     L +ALI
Sbjct: 239 EAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALI 298

Query: 155 DMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           DM++KCG +DKA+++F  + N +  ++W+++I GLAMHGR  +A+  F  M +AGV P D
Sbjct: 299 DMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSD 358

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V ++G+LSACSH GLV++GR  +  M N  G++P+IEHYGCMVD+L R+G ++EA + I 
Sbjct: 359 VVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLIL 418

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP++ + +I + L+ AC   G +++ E I K L+G  P    +YV LS+++A    WE 
Sbjct: 419 NMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEG 478

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             K+R  M +  ++K PG + IELD  I+EF+  D SH +++ I+ ML+EM  +++  GY
Sbjct: 479 VVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGY 538

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
            P T++VLL+++E++K+ AL+ HSEK+AIAF L+ T P TP++IVKNLRVC DCHS+ K 
Sbjct: 539 RPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKL 598

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           +SKIYNR+I+VRDR RFHHF++
Sbjct: 599 VSKIYNRKIIVRDRKRFHHFEN 620


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/507 (42%), Positives = 324/507 (63%), Gaps = 36/507 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           +L   ++PN+FT+  +LK+C+       GK +H  VLKF  G D +V   LV +Y     
Sbjct: 121 LLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176

Query: 57  -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C   +G +E  R +FD M ERD VSW+ MI GYA+ 
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236

Query: 91  GLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G   DA+ LF+++   G   PDEIT+V  LSAC+ +GALE G+W+  F++   +  +V +
Sbjct: 237 GFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKV 296

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AG 208
           C  LIDM++KCG +++A+ +F     + IV+W ++IAG AMHG   +A+ LF EM    G
Sbjct: 297 CTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + P D+ F+G L AC+H GLV++G   F+SM  ++GI PKIEHYGC+V +L R+G++K A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           +E I+ M ++A+ ++W +++ +C   G+  L + I + LIG    +   YVLLS+IYA +
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASV 476

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             +E   K+R +M ++G+ K PG + IE++N+++EF  GD+ H +SKEIY ML ++  ++
Sbjct: 477 GDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K  GYVP T+ VL D+ E +KE +L  HSE+LAIA+ L+ T PG+P++I KNLRVC+DCH
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCH 596

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           + TK ISKI  R+IV+RDR+RFHHF D
Sbjct: 597 TVTKLISKITGRKIVMRDRNRFHHFTD 623



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 32/294 (10%)

Query: 32  VHGAVLKFQF--GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           +H A+L+          V N  +H   +  G I     +F +  + D   ++A I   + 
Sbjct: 48  IHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASI 107

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA-------LEVGKWVESFIEKQM 142
            GL   A  L+ Q+  S + P+E T  ++L +C+           L+ G  ++ ++   +
Sbjct: 108 NGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGL 167

Query: 143 VN--------------------RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           V+                    RS+    A+I  +AK G+V+ A  LF SM  R IVSW 
Sbjct: 168 VDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWN 227

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            +I G A HG   +A+ LF+++L  G P PD++  V  LSACS  G ++ GR     +K+
Sbjct: 228 VMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKS 287

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              I   ++    ++DM  + G ++EA       P   + + W  +I+     G
Sbjct: 288 S-RIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/489 (45%), Positives = 310/489 (63%), Gaps = 30/489 (6%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---------------- 59
           VL AC+ +  +  GK VHG V+K      +++QN L+HMY SCE                
Sbjct: 295 VLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLD 354

Query: 60  --------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
                         G IE  R +FD M ++D+VSWSAMI GYA+    T+ + LF++MQI
Sbjct: 355 QISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQI 414

Query: 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
            G  PDE  +V+V+SACT L AL+ GKW+ ++I K  +  ++ L   LI+M+ K G V+ 
Sbjct: 415 EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVED 474

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           AL++F+ +  + + +W ++I GLAM+G   +++  F EM E GV P+++ FV +L AC H
Sbjct: 475 ALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRH 534

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            GLVD+G  +F+SM  +  I P I+HYGCMVD+L R+G +KEA E I+ MP+  +   W 
Sbjct: 535 MGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWG 594

Query: 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345
            L+ AC   G+ +  E I ++L+   P H+   VLLS+IYA    W    ++R +M + G
Sbjct: 595 ALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHG 654

Query: 346 MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
           + K PG ++IE    ++EF+ GDK+H Q++ I  MLDEM +K+K  GY P T EV LDI+
Sbjct: 655 VVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDID 714

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           EE+KE  L +HSEKLAIAF L+   P TPIRIVKNLR+CNDCH+A K ISK +NREIVVR
Sbjct: 715 EEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVR 774

Query: 466 DRHRFHHFK 474
           DRHRFHHFK
Sbjct: 775 DRHRFHHFK 783



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 34/283 (12%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   N+++ ++G  +G +E   K+F+EM ++D VSWSA+I  Y +  +  +A+ LF++M
Sbjct: 222 NVIASNSMIVLFGK-KGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEM 280

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA----- 158
             +G+  DE+ +++VLSAC+ L  +  GK V   + K  +   V L NALI M++     
Sbjct: 281 NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340

Query: 159 --------------------------KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
                                     KCG+++KA  LF SM  +  VSW+++I+G A   
Sbjct: 341 VTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQD 400

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
           R  E + LF+EM   G  PD+   V ++SAC+H   +D+G+     ++ + G+   I   
Sbjct: 401 RFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKN-GLKINIILG 459

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +++M  + G V++A E  + +  E     W  LI      G
Sbjct: 460 TTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALILGLAMNG 501



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 50/307 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE  V+ + +TYP + ++C+  + + + GK +   VLK  F  D+++QNTL++MY  C 
Sbjct: 117 MLESNVAADNYTYPILFQSCSIRLAEFD-GKCIQDHVLKVGFDSDVYIQNTLINMYAVC- 174

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RKVFD  S  D VSW++M+ GY  +G   +A D++ +M      P+        
Sbjct: 175 GNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM------PE-------- 220

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                                    R+V   N++I +F K G+V++A KLF  M  + +V
Sbjct: 221 -------------------------RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLV 255

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW+++I+    +    EA+ LF+EM   G+  D+V  + +LSACS   +V  G+     +
Sbjct: 256 SWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGK-LVHGL 314

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCARGE 296
               GI   +     ++ M      V  A    QK+  E+   + I W ++IS     GE
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTA----QKLFSESCCLDQISWNSMISGYVKCGE 370

Query: 297 LKLAESI 303
           ++ A ++
Sbjct: 371 IEKARAL 377



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    ++F  +   +    + M+ GY +      AI +++ M  S V  D  T   +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+   A   GK ++  + K   +  V + N LI+M+A CG++  A K+F   +   +VS
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++AG  + G   EA  +++ M E  V    +A   ++      G V++  + F+ MK
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNEMK 250


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/505 (45%), Positives = 321/505 (63%), Gaps = 35/505 (6%)

Query: 5   GVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-------- 55
           G  PN++T+ FV KAC  G+G L  G+ +    +K     ++ V N ++ MY        
Sbjct: 112 GFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDE 170

Query: 56  --------------------GSCEGGIELGR--KVFDEMSERDSVSWSAMIGGYARLGLS 93
                               G   G  E+GR  ++FDEMSERD VSW+ +I GY ++G  
Sbjct: 171 ARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCF 230

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+DLF +M  +G  P+E T+ + L+AC +L AL+ G+W+  +I+K  +  +  L  +L
Sbjct: 231 KEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASL 290

Query: 154 IDMFAKCGDVDKALKLFRSMNGRT--IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           +DM+AKCG++D A K+F    G    +  W ++I G AMHG+  EA+ LFE+M    V P
Sbjct: 291 LDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSP 350

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V FV LL+ACSH  LV++GR YF SM + +GI P+IEHYGCMVD+L RSG +KEA E 
Sbjct: 351 NKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEET 410

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           +  MP+  +  IW  L+ AC    +++  + I K +   +  H   +VLL+++Y+   +W
Sbjct: 411 VFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQW 470

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           ++   +R+ ++  G KK PG + IEL+   ++F+ GD+SH Q+K++Y  LDEM  K+K A
Sbjct: 471 DEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNA 530

Query: 392 GYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           GYVP   EVLLDI +EEDKE AL+KHSEKLAIAF L+ TPPGT IRIVKNLRVC DCH A
Sbjct: 531 GYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEA 590

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISK+Y REI+VRDR R+HHFKD
Sbjct: 591 TKFISKVYKREIIVRDRIRYHHFKD 615



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 136/307 (44%), Gaps = 70/307 (22%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQM-QISGVCPD 111
           +  S  G +    ++FD++ + D   ++ MI  +A +  S+ +++ +F  M ++SG  P+
Sbjct: 57  LIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPN 116

Query: 112 EITMVTVLSACTD-LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK-- 168
             T V V  AC + LG LE G+ +     K  +  ++ + NA+I M+A  G VD+A +  
Sbjct: 117 RYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVF 175

Query: 169 -----------------------------LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
                                        +F  M+ R +VSWT++IAG    G   EA+ 
Sbjct: 176 DWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALD 235

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDS------------------ 238
           LF EML+ G PP++      L+AC++   +D+GR    Y D                   
Sbjct: 236 LFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYA 295

Query: 239 -----------MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE---ANPIIW 284
                        +++G+  K+  +  M+      G+ KEA +  ++M +E    N + +
Sbjct: 296 KCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTF 355

Query: 285 RTLISAC 291
             L++AC
Sbjct: 356 VALLNAC 362


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/511 (44%), Positives = 315/511 (61%), Gaps = 44/511 (8%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT P V+K CA +G +  GK +HG  LK  FG D+ VQ +LV+MY  C G I+  RK
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKC-GEIDCARK 171

Query: 68  VFDEMSERDS-----------VSWSAMIGGYARLGLSTDAIDLFRQMQIS---------- 106
           VFD M ++D            VSW+AMI GY + G    A++LF QM I           
Sbjct: 172 VFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 231

Query: 107 ---------------------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                                G  P   T+V+VLSA + L  L  G+W+ S++EK     
Sbjct: 232 GYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL 291

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
              L  +LI+M+AKCG ++ AL +FR++  + +  WT++I GL +HG    A+ALF EM 
Sbjct: 292 DGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC 351

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           + G+ P+ + F+G+L+AC+H GLVD GR+YFD M N++ I P +EHYGC+VD+LCR+G +
Sbjct: 352 KTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHL 411

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
           +EA   I+ MPI  N +IW +L+      G++ + E   +R+I   P     Y+LLS++Y
Sbjct: 412 EEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMY 471

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           A    WEK + +RE+M KRG +K PG + +E    ++EF+ GD SH Q+KEIY  + EM 
Sbjct: 472 AASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMK 531

Query: 386 RKMKKAGYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVC 444
            K+K  G+VP T++VLL I  E++KE  L  HSE+LAIAF L+   PG PIRI+KNLRVC
Sbjct: 532 EKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVC 591

Query: 445 NDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           NDCHS TK +SKIY+REI+VRD  RFHHFK+
Sbjct: 592 NDCHSVTKLLSKIYSREIIVRDNCRFHHFKN 622



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 45/258 (17%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           + +H   LK    +   V + L+ +Y   +   +   R +FD +  R  + W+ +I  Y 
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-----------ESF 137
               S D I LF ++ +    PD  T+  V+  C  LG ++ GK +           + F
Sbjct: 93  ENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 138 IEKQMVN--------------------RSVGLCNALID-----------MFAKCGDVDKA 166
           ++  +VN                    + V L N+LID            + K GD D A
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
           L+LF  M    +V+W  +IAG  ++G+ ++AV +F  ML+ G  P     V +LSA S  
Sbjct: 212 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 271

Query: 227 GLVDKGREYFDSM-KNDF 243
            ++ KGR     M KN F
Sbjct: 272 AVLGKGRWIHSYMEKNGF 289



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G  P+  T   VL A +G+  L  G+ +H  + K  F  D  +  +L+ MY  C G
Sbjct: 249 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC-G 307

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE    VF  + ++    W+A+I G    G++  A+ LF +M  +G+ P+ I  + VL+
Sbjct: 308 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 367

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC   G ++ G+ + +  + +  +  ++     L+D+  + G +++A     +M      
Sbjct: 368 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 427

Query: 179 VSWTSVIAGLAMHGR 193
           V W S++ G   HG+
Sbjct: 428 VIWMSLLGGSRNHGK 442



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           K  D+  A  +F  +  R+++ W ++I     +    + + LF E++   + PD+     
Sbjct: 62  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPC 120

Query: 219 LLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           ++  C+  G+V +G++    ++K  FG    ++  G +V+M  + G +  A +    M I
Sbjct: 121 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ--GSLVNMYSKCGEIDCARKVFDGM-I 177

Query: 278 EANPIIWRTLI 288
           + + ++W +LI
Sbjct: 178 DKDVVLWNSLI 188


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/476 (45%), Positives = 326/476 (68%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV P+KFTYPFVLKAC+ +G ++ G  VHG V K     D+ VQN+L++MYG C G
Sbjct: 89  MIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKC-G 147

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVL 119
            I+    VF+ M E+   SWSA+IG +A + +  + + L  +M   G C  +E T+V VL
Sbjct: 148 EIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVL 207

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LG+ ++GK +   + + +   +V +  +LIDM+ K G ++K L++F++M+ +   
Sbjct: 208 SACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRY 267

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+T +I+GLA+HGRG EA+ +F EM+E G+ PDDV +VG+ SACSH GLV++G + F SM
Sbjct: 268 SYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSM 327

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +  I P ++HYGCMVD+L R G +KEA+E I+ M I+ N +IWR+L+SAC     L++
Sbjct: 328 QFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEI 387

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   + L      +  +Y++L+++YAK  +W+   KIR  + +R + + PG +LIE   
Sbjct: 388 GKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKR 447

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++Y+FV  DKS  Q   IYEM+ +M  ++K  GY+P TS+VLLD+++E+K++ L  HS+K
Sbjct: 448 KVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQK 507

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ T  G+P+RI +NLR+C+DCH+ TK+IS IY REI VRDR RFHHFK+
Sbjct: 508 LAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKN 563



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 16/287 (5%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE----GGIELGRKVFDEMSERDSVSWSAMIG 85
           K VH  VLK     D    + LV    +C     G ++    +F ++ E  S  ++ MI 
Sbjct: 15  KQVHAHVLKCGIFFDTFCMSNLV---ATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIR 71

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G        +A+ L+  M   GV PD+ T   VL AC+ LG ++ G  V   + K  +  
Sbjct: 72  GNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEG 131

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
            V + N+LI+M+ KCG++  A  +F  M+ +++ SW+++I   A      E + L  +M 
Sbjct: 132 DVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMS 191

Query: 206 EAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMK---NDFGIIPKIEHYGCMVDMLCR 261
             G    ++   V +LSAC+H G  D G+     +    ++  ++ K      ++DM  +
Sbjct: 192 SEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTS----LIDMYVK 247

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           SG +++     + M  E N   +  +IS     G  K A  +   +I
Sbjct: 248 SGCLEKGLRVFKNMS-EKNRYSYTVMISGLAIHGRGKEALKVFSEMI 293


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/432 (47%), Positives = 303/432 (70%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT++H Y +  G ++L R+VF+ M +RD+ SWS+M+  Y +   S DA++L+R+M
Sbjct: 136 DMVSWNTMIHGY-AVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREM 194

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           + + V PD  TMV+VLSAC+D+GAL VG  V  F+E   V   V L  ALIDM+AKCGD+
Sbjct: 195 RAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDI 254

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + ++++F SM  + +++W+S+I GLA HG G +A++LF  ML  G+ P++V F+G+L +C
Sbjct: 255 ENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISC 314

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +H GLV  G++YF SM    G+ PK++HYGCMVD+L RSG ++EA + I+ MP E + +I
Sbjct: 315 THLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVI 374

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           WR L+ AC     +++AE    +L   +P  + +YVLLS+IYA+   WE   ++R  + +
Sbjct: 375 WRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRR 434

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
             +++IPG + IE  N I+EF+ GD+SH +SKEIY+ML EM  ++++AGY P T  VL D
Sbjct: 435 ERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQD 494

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           I+E+ KE AL +HSEKLA+AF LL TP G+ +RI KNLR C DCHSA K I+ +Y R+++
Sbjct: 495 IDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLI 554

Query: 464 VRDRHRFHHFKD 475
           +RDR+RFHHF +
Sbjct: 555 IRDRNRFHHFSE 566



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+P+  T   VL AC+ +G L +G  VH  V       D+ +   L+ MY  C G IE  
Sbjct: 199 VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKC-GDIENS 257

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  M  +D ++WS+MI G A  G   DA+ LF +M   G+ P+E+T + VL +CT L
Sbjct: 258 VRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHL 317

Query: 126 GALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           G +  G K+  S      V   V     ++D+  + G +++A +L R M
Sbjct: 318 GLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM 366



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 53/315 (16%)

Query: 9   NKFTYPFVLKACAGIG-------DLNLGK-SVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           N F+    ++A A +        DL LG  S+H   LK  F   D+ V+  LV  Y    
Sbjct: 30  NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKA- 88

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G  +L R  FDE   RD    + M+  Y   G   +A  +F  M+               
Sbjct: 89  GRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMR--------------- 133

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                              E+ MV+      N +I  +A  G+VD A ++F  M+ R   
Sbjct: 134 -------------------ERDMVS-----WNTMIHGYAVNGEVDLAREVFNGMDDRDAF 169

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW+S+++      R  +A+ L+ EM  A V PD    V +LSACS  G +  G E    +
Sbjct: 170 SWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFV 229

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +++ G+   ++    ++DM  + G ++ +      MP++ + + W ++I      G    
Sbjct: 230 ESN-GVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMIIGLANHGFGHD 287

Query: 300 AESITKRLI--GNEP 312
           A S+  R++  G +P
Sbjct: 288 ALSLFSRMLSEGLQP 302


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 328/532 (61%), Gaps = 67/532 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--------- 58
           PNK+TYP VLKAC+  G +  G  VH  ++K   G D H+ ++ + MY S          
Sbjct: 135 PNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 194

Query: 59  ---EGG-------------------IELGRKVFDEMSE---------------------- 74
              +GG                   +E  R++F+ M +                      
Sbjct: 195 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 254

Query: 75  ----------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
                     RD +SWSAMI GY + G   +A+++F QMQ   + P +  + +VLSAC +
Sbjct: 255 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 314

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL+ G+W+ ++ ++  +     L  +L+DM+AKCG +D A ++F  M+ + + SW ++
Sbjct: 315 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 374

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLAMHGR  +A+ LF +M    + P+++ FVG+L+AC+H GLV KG   F+SM+ ++G
Sbjct: 375 IGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 431

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P+IEHYGC+VD+L R+G + EA + +  +P E  P +W  L+ AC   G ++L E + 
Sbjct: 432 VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVG 491

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD-NEIYE 363
           K L+  EP +   Y LLS+IYAK  RWE+  ++R++M +RG+K  PG+++I+L   E+++
Sbjct: 492 KILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHK 551

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F+ GD SH Q K+IY+MLD++  +++  GY P  S+VL DI+EE+KE A+ +HSEKLAI 
Sbjct: 552 FIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIG 611

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ T PGT IRIVKNLRVC DCHSATK IS++YNREI+VRDR R+HHF++
Sbjct: 612 FGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRN 663



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 6/189 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P KF  P VL ACA +G L+ G+ +H    +     D  +  +LV MY  C G I+L 
Sbjct: 298 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC-GRIDLA 356

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF++MS ++  SW+AMIGG A  G + DAIDLF +M I+   P+EIT V VL+AC   
Sbjct: 357 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHG 413

Query: 126 GALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTS 183
           G ++ G  + + + K+  V   +     ++D+  + G + +A K+  S+    T   W +
Sbjct: 414 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 473

Query: 184 VIAGLAMHG 192
           ++     HG
Sbjct: 474 LLGACRKHG 482



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 22/279 (7%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVFDEMSERDSVSWSAMIG 85
           K  H  +L+     D ++  +LV  Y +         E   +VFD + + +   W+ MI 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                     AI L+ +M ++   P++ T   VL AC+D G +  G  V + + K  +  
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEM 204
              + ++ I M+A  G + +A ++     G    V W ++I G    G    A  LFE M
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 205 LEAGVPPDD---VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
                 PD      +  ++S  S CG+V+  RE+FD MK    I      +  M+D   +
Sbjct: 231 ------PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI-----SWSAMIDGYIQ 279

Query: 262 SGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGEL 297
            G   EA E    +QK  I     +  +++SAC   G L
Sbjct: 280 EGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGAL 318


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/475 (44%), Positives = 307/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+ P++ TY  ++ ACA   DL+L + +H  V++  FG D+ V   LVHMY  C G
Sbjct: 355 MQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKC-G 413

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R+VFD MS RD VSWSAMIG Y   G   +A + F  M+ + V PD +T + +L+
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLN 473

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL++G  + +   K  +   + + NALI+M  K G +++A  +F +M  R +V+
Sbjct: 474 ACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVT 533

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I G ++HG   EA+ LF+ ML+    P+ V FVG+LSACS  G V++GR +F  + 
Sbjct: 534 WNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLL 593

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +  GI+P +E YGCMVD+L R+G + EA   I +MP++ N  IW TL++AC   G L +A
Sbjct: 594 DGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVA 653

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +R + +EP   + YV LSH+YA    WE   K+R+VM+ RG++K  G T IE++ +
Sbjct: 654 ERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGK 713

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D+SH Q+ EIY  L  +   +K+ GY+P T  VL ++ E++KE+A++ HSEKL
Sbjct: 714 LHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKL 773

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ +L  P G PIRI KNLRVC DCHSA+KFISK+  REI+ RD  RFHHFK+
Sbjct: 774 AIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKN 828



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 5/309 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  PN+ ++  +L  C+    L  GK+VH   +     DD+ V   L+ MY  C G
Sbjct: 254 MQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGC-G 312

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R+VFD+M  RD VSW+ MI GYA      DA  LF  MQ  G+ PD IT + +++
Sbjct: 313 SIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIIN 372

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC     L + + + S + +      + +  AL+ M+AKCG +  A ++F +M+ R +VS
Sbjct: 373 ACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVS 432

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W+++I     +G G EA   F  M    V PD V ++ LL+AC H G +D G E Y  ++
Sbjct: 433 WSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAI 492

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K D  ++  I     +++M  + G ++ A    + M ++ + + W  +I      G  + 
Sbjct: 493 KAD--LVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNARE 549

Query: 300 AESITKRLI 308
           A  +  R++
Sbjct: 550 ALDLFDRML 558



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 150/299 (50%), Gaps = 11/299 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M++  + P+  T+  VL AC+    L LGK  H  V+K  F  D  +   LV MY   GS
Sbjct: 153 MVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGS 212

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
            +G     R+VFD + +RD  +++ MIGGYA+ G    A  LF +MQ  G  P+ I+ ++
Sbjct: 213 MDGA----RQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLS 268

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L  C+   AL  GK V +      +   V +  ALI M+  CG ++ A ++F  M  R 
Sbjct: 269 ILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRD 328

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YF 236
           +VSWT +I G A +    +A  LF  M E G+ PD + ++ +++AC+    +   RE + 
Sbjct: 329 VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHS 388

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++  FG    ++    +V M  + G +K+A +    M    + + W  +I A    G
Sbjct: 389 QVVRAGFGTDLLVDT--ALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENG 444



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 169/375 (45%), Gaps = 51/375 (13%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  + + C  + D  LGK V   +++     +I+  NTL+ ++  C   +E  R+ FD 
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLE-ARQTFDS 121

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +  +  V+W+A+I GYA+LG   +A  LFRQM    + P  IT + VL AC+    L++G
Sbjct: 122 VENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLG 181

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K   + + K        +  AL+ M+ K G +D A ++F  +  R + ++  +I G A  
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-------------------------- 225
           G G +A  LF  M + G  P+ ++F+ +L  CS                           
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 226 ---------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
                    CG ++  R  FD MK     +  +  +  M+     +  +++A      M 
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMK-----VRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 277 ---IEANPIIWRTLISACCARGELKLAESITKRLI----GNEPMHESNYVLLSHIYAKLL 329
              I+ + I +  +I+AC +  +L LA  I  +++    G + + ++  V   H+YAK  
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALV---HMYAKCG 413

Query: 330 RWEKKTKIREVMDKR 344
             +   ++ + M +R
Sbjct: 414 AIKDARQVFDAMSRR 428



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T V +   C  L    +GK V   I +     ++   N LI + + CG++ +A + F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
            S+  +T+V+W ++IAG A  G   EA ALF +M++  + P  + F+ +L ACS    + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            G+E F +     G +        +V M  + G +  A +
Sbjct: 180 LGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQ 218


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/503 (43%), Positives = 317/503 (63%), Gaps = 34/503 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  GV PN FT+  +LK C     +  GK++H   +K  F  D++V+  L+ +Y     
Sbjct: 119 MLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 174

Query: 57  -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C    G ++  R +FD M ERD V W+ MI GY + 
Sbjct: 175 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 234

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G+  +A+ LFR+M  +   P+E+T+++VLSAC  LGALE G+WV S+IE   +  +V + 
Sbjct: 235 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 294

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DM++KCG ++ A  +F  ++ + +V+W S+I G AMHG   EA+ LF+ M   G+ 
Sbjct: 295 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLH 354

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P ++ F+G+LSAC H G V +G + F+ MK+++GI PKIEHYGCMV++L R+G V++A+E
Sbjct: 355 PTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYE 414

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ M IE +P++W TL+ AC   G++ L E I + L+     +   Y+LLS+IYA +  
Sbjct: 415 LVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGN 474

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+   ++R +M   G+KK PG + IE++N+++EF+ G  +H + KEIY ML+E+   +K 
Sbjct: 475 WDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKS 534

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P T  VL DI E +KE +L  HSEKLAIAF L+ T PGT I+IVKNLRVC DCH  
Sbjct: 535 HGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEV 594

Query: 451 TKFISKIYNREIVVRDRHRFHHF 473
           TK ISKI  R+IVVRDR+RFHHF
Sbjct: 595 TKLISKITGRKIVVRDRNRFHHF 617



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 39/293 (13%)

Query: 35  AVLKFQFGDDIH-VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS 93
           AVL F+ G D H + N  +    +  G ++    +F          W+A+I G+A  GL 
Sbjct: 51  AVL-FRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLH 109

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
             A++ + QM   GV P+  T  ++L  C     +E GK + S   K   +  + +   L
Sbjct: 110 EQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGL 165

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVS-------------------------------WT 182
           +D++A+ GDV  A +LF +M  +++VS                               W 
Sbjct: 166 LDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 225

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            +I G   +G   EA+ LF  ML+A   P++V  + +LSAC   G ++ GR     ++N+
Sbjct: 226 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 285

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            GI   +     +VDM  + G +++A     K+  + + + W ++I      G
Sbjct: 286 -GIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSMIVGYAMHG 336


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/505 (45%), Positives = 321/505 (63%), Gaps = 35/505 (6%)

Query: 5   GVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-------- 55
           G  PN++T+ FV KAC  G+G L  G+ +    +K     ++ V N ++ MY        
Sbjct: 27  GFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDE 85

Query: 56  --------------------GSCEGGIELGR--KVFDEMSERDSVSWSAMIGGYARLGLS 93
                               G   G  E+GR  ++FDEMSERD VSW+ +I GY ++G  
Sbjct: 86  ARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCF 145

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+DLF +M  +G  P+E T+ + L+AC +L AL+ G+W+  +I+K  +  +  L  +L
Sbjct: 146 KEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASL 205

Query: 154 IDMFAKCGDVDKALKLFRSMNGRT--IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           +DM+AKCG++D A K+F    G    +  W ++I G AMHG+  EA+ LFE+M    V P
Sbjct: 206 LDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSP 265

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V FV LL+ACSH  LV++GR YF SM + +GI P+IEHYGCMVD+L RSG +KEA E 
Sbjct: 266 NKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEET 325

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           +  MP+  +  IW  L+ AC    +++  + I K +   +  H   +VLL+++Y+   +W
Sbjct: 326 VFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQW 385

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           ++   +R+ ++  G KK PG + IEL+   ++F+ GD+SH Q+K++Y  LDEM  K+K A
Sbjct: 386 DEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNA 445

Query: 392 GYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           GYVP   EVLLDI +EEDKE AL+KHSEKLAIAF L+ TPPGT IRIVKNLRVC DCH A
Sbjct: 446 GYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEA 505

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISK+Y REI+VRDR R+HHFKD
Sbjct: 506 TKFISKVYKREIIVRDRIRYHHFKD 530



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 70/278 (25%)

Query: 83  MIGGYARLGLST-DAIDLFRQM-QISGVCPDEITMVTVLSACTD-LGALEVGKWVESFIE 139
           MI  +A +  S+ +++ +F  M ++SG  P+  T V V  AC + LG LE G+ +     
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAI 59

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALK------------------------------- 168
           K  +  ++ + NA+I M+A  G VD+A +                               
Sbjct: 60  KIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKE 119

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M+ R +VSWT++IAG    G   EA+ LF EML+ G PP++      L+AC++   
Sbjct: 120 MFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVA 179

Query: 229 VDKGRE---YFDS-----------------------------MKNDFGIIPKIEHYGCMV 256
           +D+GR    Y D                                +++G+  K+  +  M+
Sbjct: 180 LDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMI 239

Query: 257 DMLCRSGRVKEAHEFIQKMPIE---ANPIIWRTLISAC 291
                 G+ KEA +  ++M +E    N + +  L++AC
Sbjct: 240 GGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 277


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/475 (44%), Positives = 309/475 (65%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  GV+P+ +T PFV++ C    DL +G+ +H  VLK     D  V  +LV MY  C  
Sbjct: 92  LLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIV 151

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  +++F+ M  +D V+W+ MIG YA    + +++ LF +M+  GV PD++ MVTV++
Sbjct: 152 -VEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVVPDKVAMVTVVN 209

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   ++   +I +   +  V L  A+IDM+AKCG V+ A ++F  M  + ++S
Sbjct: 210 ACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVIS 269

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IA    HGRG +A+ LF  ML   + P+ V FV LL ACSH GL+++G  +F+SM 
Sbjct: 270 WSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMW 329

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  + P ++HY CMVD+L R+GR+ EA   I+ M +E +  +W  L+ AC    +++LA
Sbjct: 330 EEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELA 389

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     L+  +P +  +YVLLS+IYAK  +WEK  K R++M +R +KKIPG T IE+DN+
Sbjct: 390 EKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNK 449

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            Y+F  GD+SH QSKEIYEML  + +K++ AGYVP T  VL D+ EE K++ L  HSEKL
Sbjct: 450 TYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKL 509

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P G PIRI KNLRVC DCH+ +K +S I  R I+VRD +RFHHF D
Sbjct: 510 AIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFND 564



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 6/262 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           + VH  V+      D+ + N L++ Y      I+    +FD ++ RDS +WS M+GG+A+
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQ-HKAIDDAYSLFDGLTMRDSKTWSVMVGGFAK 78

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G        FR++   GV PD  T+  V+  C D   L++G+ +   + K  +     +
Sbjct: 79  AGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFV 138

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           C +L+DM+AKC  V+ A +LF  M  + +V+WT +I   A      E++ LF+ M E GV
Sbjct: 139 CASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGV 197

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            PD VA V +++AC+  G + + R   D + +N F +   +     M+DM  + G V+ A
Sbjct: 198 VPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSL--DVILGTAMIDMYAKCGSVESA 255

Query: 269 HEFIQKMPIEANPIIWRTLISA 290
            E   +M  E N I W  +I+A
Sbjct: 256 REVFDRMK-EKNVISWSAMIAA 276


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 328/532 (61%), Gaps = 67/532 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--------- 58
           PNK+TYP VLKAC+  G +  G  VH  ++K   G D H+ ++ + MY S          
Sbjct: 136 PNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 195

Query: 59  ---EGG-------------------IELGRKVFDEMSE---------------------- 74
              +GG                   +E  R++F+ M +                      
Sbjct: 196 LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEV 255

Query: 75  ----------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
                     RD +SWSAMI GY + G   +A+++F QMQ   + P +  + +VLSAC +
Sbjct: 256 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 315

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL+ G+W+ ++ ++  +     L  +L+DM+AKCG +D A ++F  M+ + + SW ++
Sbjct: 316 LGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAM 375

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLAMHGR  +A+ LF +M    + P+++ FVG+L+AC+H GLV KG   F+SM+ ++G
Sbjct: 376 IGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYG 432

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P+IEHYGC+VD+L R+G + EA + +  +P E  P +W  L+ AC   G ++L E + 
Sbjct: 433 VEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVG 492

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD-NEIYE 363
           K L+  EP +   Y LLS+IYAK  RWE+  ++R++M +RG+K  PG+++I+L   E+++
Sbjct: 493 KILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHK 552

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F+ GD SH Q K+IY+MLD++  +++  GY P  S+VL DI+EE+KE A+ +HSEKLAI 
Sbjct: 553 FIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIG 612

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ T PGT IRIVKNLRVC DCHSATK IS++YNREI+VRDR R+HHF++
Sbjct: 613 FGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRN 664



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 6/189 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P KF  P VL ACA +G L+ G+ +H    +     D  +  +LV MY  C G I+L 
Sbjct: 299 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC-GRIDLA 357

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF++MS ++  SW+AMIGG A  G + DAIDLF +M I    P+EIT V VL+AC   
Sbjct: 358 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIY---PNEITFVGVLNACAHG 414

Query: 126 GALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTS 183
           G ++ G  + + + K+  V   +     ++D+  + G + +A K+  S+    T   W +
Sbjct: 415 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 474

Query: 184 VIAGLAMHG 192
           ++     HG
Sbjct: 475 LLGACRKHG 483



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 22/279 (7%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVFDEMSERDSVSWSAMIG 85
           K  H  +L+     D ++  +LV  Y +         E   +VFD + + +   W+ MI 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                     AI L+ +M ++   P++ T   VL AC+D G +  G  V + + K  +  
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEM 204
              + ++ I M+A  G + +A ++     G    V W ++I G    G    A  LFE M
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 205 LEAGVPPDD---VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
                 PD      +  ++S  S CG+V+  RE+FD MK    I      +  M+D   +
Sbjct: 232 ------PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI-----SWSAMIDGYIQ 280

Query: 262 SGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGEL 297
            G   EA E    +QK  I     +  +++SAC   G L
Sbjct: 281 EGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGAL 319


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 298/441 (67%), Gaps = 2/441 (0%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           +L+     D    NTL+  +    G +   R +FDEM ER++VSWSAM+ GY + G   +
Sbjct: 150 LLRTSAAVDASTFNTLITAHARA-GRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGRE 208

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ +F QMQ  GV PD+  +V VL+AC  LGALE GKWV  +++   +  +V L  AL+D
Sbjct: 209 ALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVD 268

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKCG+V   +++F  M  + +++WT++I GLAMHGRG +++ LF +M  +GV PDD+A
Sbjct: 269 MYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIA 328

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+G L AC+H GLVDKGRE F+SM N++GI PKIEHYGCMVD+L R+G + EA + ++KM
Sbjct: 329 FIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKM 388

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ + +IW  L++ C     ++LAE + K  I  EP     YVLL +IY+   R     
Sbjct: 389 PMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAR 448

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYV 394
           +IR +M ++G++K PG + +E+   I++F+ GD SH + K+I     E+  +++ + GYV
Sbjct: 449 EIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYV 508

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P   EVLLDI EE+ E AL++HSEKLAIAFAL+ T    PIRIVKNLRVC DCH  TK I
Sbjct: 509 PDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLI 568

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK+Y REI+VRDR RFH FKD
Sbjct: 569 SKVYGREIIVRDRTRFHLFKD 589



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+      VL ACA +G L  GK VHG +        + +   LV MY  C G
Sbjct: 216 MQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKC-G 274

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++LG +VF+ M +++ ++W+ MI G A  G  +D++ LF QM+ SGV PD+I  +  L 
Sbjct: 275 EVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALC 334

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           ACT  G ++ G+ +  S +    +   +     ++D+ A+ G + +A  +   M  +   
Sbjct: 335 ACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDA 394

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV---PPDDVAFVGLLSACSHCGLVDKGREY 235
           + W +++AG   H    + V L E +++  +   P    A+V L +  S  G     RE 
Sbjct: 395 LIWGALMAGCRFH----KNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREI 450

Query: 236 FDSMK 240
            + M+
Sbjct: 451 RNLMR 455


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/478 (46%), Positives = 312/478 (65%), Gaps = 17/478 (3%)

Query: 5   GVSPNKFTYPFVLKACAG------IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
            V P  F++ +V            +GDLNL   +   +       D    +T++  Y   
Sbjct: 4   AVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPH----KDTVTLDTMITAY--- 56

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
               E   KVF+ M E+D V+W+++I G+A  G   +A+ L+++M   GV PD  TMV++
Sbjct: 57  ---FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSL 113

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
           LSAC +L  L +G+    ++ K  +N+++   NAL+D++AKCG + +A K+F  M   R 
Sbjct: 114 LSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERN 173

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWTS+I GLA++G G EA+  F++M   G+ P ++ FVG+L ACSHCG+V++G EYF 
Sbjct: 174 VVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFK 233

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            MK  + I+P+IEHYGCMVD+L R+G +KEA+++IQ MP++ N +IWRTL+ AC   G L
Sbjct: 234 RMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHL 293

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            L      RL+  EP    +YVLLS++YA   RW    ++R  M   G++K PG +L+EL
Sbjct: 294 GLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVEL 353

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
            N ++EFV GD++H QS+ IY+ML EM  K+K AGYVP T+ VL DI EE+KE AL  HS
Sbjct: 354 GNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHS 413

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EK+AIAF L+ T PGTPIRI+KNLRVC DCH A K ISK++ R+IVVRD  RFHHF+D
Sbjct: 414 EKIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRD 471


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/469 (44%), Positives = 315/469 (67%), Gaps = 10/469 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNK+TYP VLKAC+  G +  G  VH  ++K   G D H+ ++ + MY S    +E  R 
Sbjct: 156 PNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRI 215

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           + D+  E D+V          R G   +A+++F QMQ   + P +  + +VLSAC +LGA
Sbjct: 216 LDDKGGEVDAVCMPD------RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 269

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ G+W+ ++ ++  +     L  +L+DM+AKCG +D A ++F  M+ + + SW ++I G
Sbjct: 270 LDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGG 329

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LAMHGR  +A+ LF +M    + P+++ FVG+L+AC+H GLV KG   F+SM+ ++G+ P
Sbjct: 330 LAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEP 386

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +IEHYGC+VD+L R+G + EA + +  +P E  P +W  L+ AC   G ++L E + K L
Sbjct: 387 QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKIL 446

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN-EIYEFVC 366
           +  EP +   Y LLS+IYAK  RWE+  ++R++M +RG+K  PG+++I+L   E+++F+ 
Sbjct: 447 LELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFII 506

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH Q K+IY+MLD++  +++  GY P  S+VL DI+EE+KE A+ +HSEKLAI F L
Sbjct: 507 GDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGL 566

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + T PGT IRIVKNLRVC DCHSATK IS++YNREI+VRDR R+HHF++
Sbjct: 567 INTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRN 615



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 6/194 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P KF  P VL ACA +G L+ G+ +H    +     D  +  +LV MY  C G
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC-G 303

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+L  +VF++MS ++  SW+AMIGG A  G + DAIDLF +M I+   P+EIT V VL+
Sbjct: 304 RIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLN 360

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC   G ++ G  + + + K+  V   +     ++D+  + G + +A K+  S+    T 
Sbjct: 361 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 420

Query: 179 VSWTSVIAGLAMHG 192
             W +++     HG
Sbjct: 421 AVWGALLGACRKHG 434



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 52/328 (15%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVFDEMSERDSVSWSAMIG 85
           K  H  +L+     D ++  +LV  Y +         E   +VFD + + +   W+ MI 
Sbjct: 72  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                     AI L+ +M ++   P++ T   VL AC+D G +  G  V + + K  +  
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 191

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
              + ++ I M+A  G + +A ++     G         +      G  +EA+ +F +M 
Sbjct: 192 DGHILSSAIRMYASFGRLVEARRILDDKGGE-----VDAVCMPDRKGCFMEALEIFHQMQ 246

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGR-------------------------------- 233
           +  + P       +LSAC++ G +D+GR                                
Sbjct: 247 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 306

Query: 234 ---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              E F+ M N      ++  +  M+  L   GR ++A +   KM I  N I +  +++A
Sbjct: 307 LAWEVFEKMSNK-----EVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNA 361

Query: 291 CCARGELKLAESI---TKRLIGNEPMHE 315
           C   G ++   +I    ++  G EP  E
Sbjct: 362 CAHGGLVQKGLTIFNSMRKEYGVEPQIE 389


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/476 (44%), Positives = 323/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G SP++ T   ++ ACA + DL +G  +H  + +        + + LV+MY  C G
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC-G 229

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVL 119
            ++  R+VFD++S++D  +WSA+I GY +   ST+A+ LFR++   S + P+E+T++ V+
Sbjct: 230 DLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVI 289

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LG LE G+WV  +I +     SV L N+LIDMF+KCGD+D A ++F SM+ + ++
Sbjct: 290 SACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLI 349

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S++ G A+HG G EA+A F  M    + PD++ F+G+L+ACSH GLV +G++ F  +
Sbjct: 350 SWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  +G+  K EHYGCMVD+LCR+G + EA EFI+ MP++ +  IW +++ AC     L+L
Sbjct: 410 EALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLEL 469

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + L+  EP ++  Y+LLS+IYAK   W +  K+RE+M+++G++K PG + + +DN
Sbjct: 470 GEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDN 529

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F+ GD SH +  EI  ML ++  K+K AGYV  TSEVLL+I++  KE+++++HSEK
Sbjct: 530 IAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEK 589

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+ + LLK+  G  I I+KNLRVC+DCH+  K +SKIY R+I +RDR+RFHHFKD
Sbjct: 590 LALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKD 645



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 167/290 (57%), Gaps = 6/290 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P++FT+P +LK CA + +  +GK +HG V+K+    D++++ TL++MY +C G ++  R 
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC-GDLKSARF 135

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F+ M  R+ V W++MI GY +     +A+ L+++M+  G  PDE+TM T++SAC +L  
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L VG  + S I +  +     L +AL++M+AKCGD+  A ++F  ++ + + +W+++I G
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFG 255

Query: 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
              + R  EA+ LF E+   + + P++V  + ++SAC+  G ++ GR   D + +   G 
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG- 314

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +     ++DM  + G +  A      M  + + I W ++++     G
Sbjct: 315 -HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALHG 362


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/473 (45%), Positives = 309/473 (65%), Gaps = 14/473 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+KFT+PF++KA + + +L  GK+ HG V+K   G D+ + N+L+H Y  C G + LG +
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC-GELGLGYR 192

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF     RD VSW++MI  + + G   +A++LF++M+   V P+ ITMV VLSAC     
Sbjct: 193 VFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSD 252

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
            E G+WV S+IE+  +  S+ L NA++DM+ KCG V+ A +LF  M  + IVSWT+++ G
Sbjct: 253 FEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 312

Query: 188 ------------LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
                       LAMHG G +A+ALF +M E  V P+ V F  +L ACSH GLV++GR +
Sbjct: 313 YAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 372

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F+ M+  +G++P ++HY CMVD+L R+G ++EA E I+KMP+     +W  L+ AC    
Sbjct: 373 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE 432

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
            + LAE    +LI  EP +   YVLLS+IYAK  +W++ + +R++M   G+KK PG + I
Sbjct: 433 NVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 492

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED-KEDALN 414
           E+D  ++EF+ GD SH  +K+IY  LDE+  +++  GYVP  S +L  + EED KE AL 
Sbjct: 493 EVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALF 552

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
            HSEKLAIAF L+ T    PIRIVKNLRVC DCHS  K +SK+Y+REI++RDR
Sbjct: 553 LHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 605



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 129/277 (46%), Gaps = 4/277 (1%)

Query: 30  KSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H  +L+   F D       +     S    ++  ++VFD++   +  +W+ +I  YA
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 89  RLGLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
                  ++ +F R +  S   PD+ T   ++ A ++L  L  GK     + K ++   V
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + N+LI  +AKCG++    ++F +   R +VSW S+I      G   EA+ LF+EM   
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            V P+ +  VG+LSAC+     + GR +  S      I   +     M+DM  + G V++
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGR-WVHSYIERNRIXESLTLSNAMLDMYTKCGSVED 290

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           A     KMP E + + W T++      GE   A+ + 
Sbjct: 291 AKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGLA 326



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN  T   VL ACA   D   G+ VH  + + +  + + + N ++ MY  C G +E  
Sbjct: 233 VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKC-GSVEDA 291

Query: 66  RKVFDEMSERDSVSWSAMIGGYARL------------GLSTDAIDLFRQMQISGVCPDEI 113
           +++FD+M E+D VSW+ M+ GYA++            G   DAI LF +MQ   V P+ +
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAV 351

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           T   +L AC+ +G +E G+   + +E    V   V     ++D+  + G +++A++L   
Sbjct: 352 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 411

Query: 173 MNGRTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
           M      S W +++    +H   + A     +++E   P +  A+V L +  +  G  D+
Sbjct: 412 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELE-PGNHGAYVLLSNIYAKAGKWDR 470


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 317/476 (66%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+P+ +T+  +LKACA       G+  HG  +K    +  +V  TL++MY  C G
Sbjct: 133 MLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAEC-G 191

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R +F  +     VS++AMI    R     +A+ LFR+MQ  G+    +T+++VLS
Sbjct: 192 DARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLS 251

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+W+  ++ K  ++  V +  ALIDM+ KCG ++ A+ +F+ M  R   +
Sbjct: 252 ACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQA 311

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +I   A H  G EA++LFEEM + G+ PDDV F+G+L ACSH GLV +G +YFDSM+
Sbjct: 312 WSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR 371

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +FG++P I+HYGC+ D+L RSG++  A+EFI ++PI+   I+WRTL+SAC +RG+  L 
Sbjct: 372 -EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLG 430

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A   RWE+  ++R++M+++G+ K+PG + IE+DN 
Sbjct: 431 KQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNR 490

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD  H +S +   M+D +  ++K AGYVP TS V  +++ EE+K  +L  HSEK
Sbjct: 491 VHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEK 550

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI+F LL T PGT +R+VKNLRVC DCHS  K +S ++NR I++RD +RFHHF+D
Sbjct: 551 LAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 606



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 15/225 (6%)

Query: 62  IELGRKVFDEMSERDSVSW-SAMIGGYARLGLS-------TDAIDLFRQMQISGVCPDEI 113
           +   R+VFD +     V W + ++ GYAR   +        +A  +F +M   GV PD  
Sbjct: 84  LSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTY 143

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T V++L AC    A E G+       K        +   LI+M+A+CGD   A  +F  +
Sbjct: 144 TFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRV 203

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           +G  +VS+ ++I       R  EA+ LF EM   G+    V  + +LSAC+  G ++ GR
Sbjct: 204 DGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGR 263

Query: 234 ---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
              EY   ++ D      ++    ++DM  + G +++A    Q M
Sbjct: 264 WIHEYVRKVQLD----SLVKVNTALIDMYGKCGSLEDAISVFQGM 304


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 323/476 (67%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G SP++ T   ++ ACA + DL +G  +H  + +        + + LV+MY  C G
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC-G 229

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVL 119
            ++  R+VFD++S++D  +WSA+I GY +   ST+A+ LFR++   S + P+E+T++ V+
Sbjct: 230 DLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVI 289

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LG LE G+WV  +I +     SV L N+LIDMF+KCGD+D A ++F SM+ + ++
Sbjct: 290 SACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLI 349

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S++ GLA+HG G EA+A F  M    + PD++ F+G+L+ACSH GLV +G++ F  +
Sbjct: 350 SWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  +G+  K EHYGCMVD+LCR+G + EA EFI+ MP++ +  IW +++ AC     L+L
Sbjct: 410 EALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLEL 469

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + L+  EP ++  Y+LLS+IYA+   W +  K+RE+M+++G++K PG + + +DN
Sbjct: 470 GEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDN 529

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F+ GD SH +  EI  ML ++  K+K  GYV  TSEVLL+I++  KE+++++HSEK
Sbjct: 530 IAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEK 589

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+ + LLK+  G  I I+KNLRVC+DCH+  K +SKIY R+I +RDR+RFHHFKD
Sbjct: 590 LALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKD 645



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 167/290 (57%), Gaps = 6/290 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P++FT+P +LK CA + +  +GK +HG V+K+    D++++ TL++MY +C G ++  R 
Sbjct: 77  PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC-GDLKSARF 135

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F+ M  R+ V W++MI GY +     +A+ L+++M+  G  PDE+TM T++SAC +L  
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L VG  + S I +  +     L +AL++M+AKCGD+  A ++F  ++ + + +W+++I G
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFG 255

Query: 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
              + R  EA+ LF E+   + + P++V  + ++SAC+  G ++ GR   D + +   G 
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG- 314

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +     ++DM  + G +  A      M  + + I W ++++     G
Sbjct: 315 -HSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALHG 362


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/468 (46%), Positives = 308/468 (65%), Gaps = 3/468 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+KFTYPF+LK+CA +    +GK +HG + K     D +V N L+HMY SC G      K
Sbjct: 94  PDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSC-GKSGRAYK 152

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF +M +RD VSW++MI G+     + +AI LF +M   GV P+E T+V+VL AC D GA
Sbjct: 153 VFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGA 212

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + +G+ V+  IE++ +     +  ALIDM+AKCG +  A K+F  +  + + +WT++I+G
Sbjct: 213 VGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISG 272

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LA HG   EAV LF++M   G+ PD+     +LSAC + G   +G  YF+SM   +GI P
Sbjct: 273 LANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKP 332

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR- 306
            I+HYGCMVD+L R+G + EA EFI+KMPIE + ++WRTLI A    G++  +E + K  
Sbjct: 333 TIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDR 392

Query: 307 -LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            L+  +     +YVLL ++YA   +W  K K+RE+M+++G+ K PG + IE+D  ++EF 
Sbjct: 393 GLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFA 452

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD  H ++++IY  LDE+  ++K  GY P  SEVLL+I+ ++K   L  HSEKLA+AF 
Sbjct: 453 AGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFG 512

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           L+KT PGT IRIVKNLR C DCHS  K ISKIY ++I+VRDR RFHHF
Sbjct: 513 LIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHF 560



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV PN+ T   VL+ACA  G + +G+ V G + + + G + +V+  L+ MY  C G
Sbjct: 188 MVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKC-G 246

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   RKVFD +  +D  +W+AMI G A  GL  +A+ LF QM+  G+ PDE TM  VLS
Sbjct: 247 SIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLS 306

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC + G    G  +  S   K  +  ++     ++D+ A+ G +D+A +  R M     +
Sbjct: 307 ACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDV 366

Query: 179 VSWTSVIAGLAMHG 192
           V W ++I    +HG
Sbjct: 367 VLWRTLIWASKVHG 380


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 321/479 (67%), Gaps = 10/479 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIEL 64
           + PN FT+P + KAC     L  G+++H  VLKF +   D  VQ  L++ Y  C G +  
Sbjct: 104 LKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKC-GKVGA 162

Query: 65  GRKVFDEMSERDSVSWSAMIGGYAR--------LGLSTDAIDLFRQMQISGVCPDEITMV 116
            R +F+++S+ D  SW++++  Y          + LS + + LF +MQ S +  +E+T+V
Sbjct: 163 CRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLV 222

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            ++SAC +LGAL  G W   ++ K  +  +  +  ALIDM++KCG +D A +LF  +  R
Sbjct: 223 ALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHR 282

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
             + + ++I G A+HG G +A+ LF++M   G+ PDDV  V  + +CSH GLV++G + F
Sbjct: 283 DTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVF 342

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +SMK  +G+ PK+EHYGC+VD+L R+GR++EA E +  MP++ N +IWR+L+ A    G 
Sbjct: 343 ESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGN 402

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           L++ E + K LI  EP    NYVLLS++YA + RW+   ++R++M   G+ K+PGS+L+E
Sbjct: 403 LEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVE 462

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           +   ++EF+ GDK+H +SKEIY  L+EM R++ + G+ P T EVL DI EE+KEDAL+ H
Sbjct: 463 VGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYH 522

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIAFAL+ +    PIRI+KNLRVC DCH+++K ISKIY REI+VRDR+RFHHFK+
Sbjct: 523 SERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKE 581


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 307/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +LE G+ P+ FT   +L AC+ +GDL  G+ + G + +     ++ V  +LV MY  C G
Sbjct: 194 LLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKC-G 252

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD M E+D V WSA+I GYA  G+  +A+D+F +MQ   V PD   MV V S
Sbjct: 253 SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFS 312

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ LGALE+G W    ++      +  L  ALID +AKCG V +A ++F+ M  +  V 
Sbjct: 313 ACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVV 372

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + +VI+GLAM G    A  +F +M++ G+ PD   FVGLL  C+H GLVD G  YF  M 
Sbjct: 373 FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMS 432

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + F + P IEHYGCMVD+  R+G + EA + I+ MP+EAN I+W  L+  C    + +LA
Sbjct: 433 SVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLA 492

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+LI  EP +  +YVLLS+IY+   RW++  KIR  ++++GM+K+PG + +E+D  
Sbjct: 493 EHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGV 552

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+ GD SH  S +IYE L+ + + +++AGY PTT  VL D+ EE+KE  L  HSEKL
Sbjct: 553 VHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKL 612

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+ T     IR+VKNLRVC DCH A K +SK+  REI+VRD +RFHHF +
Sbjct: 613 AVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTE 667



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 177/316 (56%), Gaps = 8/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M ++G +P+ FT+PFVLKAC  +    ++G S+H  V+K  F  D+ V+  LV +Y S  
Sbjct: 92  MRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLY-SKN 150

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RKVFDE+ E++ VSW+A+I GY   G   +A+ LFR +   G+ PD  T+V +L
Sbjct: 151 GFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRIL 210

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ +G L  G+W++ ++ +     +V +  +L+DM+AKCG +++A ++F  M  + +V
Sbjct: 211 YACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVV 270

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W+++I G A +G   EA+ +F EM    V PD  A VG+ SACS  G ++ G      M
Sbjct: 271 CWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLM 330

Query: 240 KND-FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             D F   P +     ++D   + G V +A E  + M    + +++  +IS     G + 
Sbjct: 331 DGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVG 387

Query: 299 LAESITKRL--IGNEP 312
            A  +  ++  +G +P
Sbjct: 388 AAFGVFGQMVKVGMQP 403



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 26/374 (6%)

Query: 17  LKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV----HMYGSCEGGIELGRKVFD 70
           LK C   G+  L+  K  H  +L+     D ++ N L+    H   +     +    VF 
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAAT-----QYATVVFA 59

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG-ALE 129
           +    +   ++ +I G        DA+ ++  M+  G  PD  T   VL ACT L     
Sbjct: 60  QTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFH 119

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           VG  + S + K   +  V +   L+ +++K G +  A K+F  +  + +VSWT++I G  
Sbjct: 120 VGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
             G   EA+ LF  +LE G+ PD    V +L ACS  G +  GR + D    + G +  +
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGR-WIDGYMRESGSVGNV 238

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
                +VDM  + G ++EA      M +E + + W  LI    + G  K A  +   +  
Sbjct: 239 FVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASNGMPKEALDVFFEM-Q 296

Query: 310 NEPMHESNYVLLSHIYA--KLLRWEKKTKIREVMDKRGMKKIP--GSTLIELDNEIYEFV 365
            E +    Y ++    A  +L   E     R +MD       P  G+ LI+   +     
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAK----- 351

Query: 366 CGDKSHHQSKEIYE 379
           CG  +  Q+KE+++
Sbjct: 352 CGSVA--QAKEVFK 363


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/460 (47%), Positives = 309/460 (67%), Gaps = 15/460 (3%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
            VL AC+ + DL  GK +     K+  G  +       HM+ +C G ++  + VFD M  
Sbjct: 196 LVLSACSKLKDLEWGKHI----FKYINGGIVE------HMFAAC-GEMDEAQGVFDNMKT 244

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           RD VSW+AMI GY R+     A+ LFR+MQ+S V PDE TMV++L AC  LGALE+G+WV
Sbjct: 245 RDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWV 304

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
           ++ I+K        + NAL+DM+ KCG+V KA K+F+ M  +   +WT++I GLA++G G
Sbjct: 305 KTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHG 364

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA+A+F  M+EA V PD++ ++G+L AC    +VDKG+ +F +M    GI P + HYGC
Sbjct: 365 EEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGC 420

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           MVD+L   G ++EA E I  MP++ N I+W + + AC     ++LA+   K+++  EP +
Sbjct: 421 MVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPEN 480

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
            + YVLL +IYA   +WE   ++R++M +RG+KK PG +L+EL+  +YEFV GD+SH QS
Sbjct: 481 GAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQS 540

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           KEIY  L+ M + + KAGY P TSEV LD+ EEDKE AL +HSEKLAIA+AL+ + PG  
Sbjct: 541 KEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVT 600

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IRIVKNLR+C DCH   K +S+ YNRE++V+D+ RFHHF+
Sbjct: 601 IRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFR 640



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 153/314 (48%), Gaps = 42/314 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P++FT+PF LK       L  GK +    +K  F  ++ VQ   +HM+  C G
Sbjct: 98  MLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLC-G 156

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  KVFD     + V+W+ M+ GY R+          +Q +IS        M+ VLS
Sbjct: 157 IVDLAHKVFDMGDACEVVTWNIMLSGYNRV----------KQFKIS-------KMLLVLS 199

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L  LE GK +  +I   +V            MFA CG++D+A  +F +M  R +VS
Sbjct: 200 ACSKLKDLEWGKHIFKYINGGIVEH----------MFAACGEMDEAQGVFDNMKTRDVVS 249

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF---- 236
           WT++I G       + A+ALF EM  + V PD+   V +L AC+  G ++ G E+     
Sbjct: 250 WTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG-EWVKTCI 308

Query: 237 --DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
             +S KND  +         +VDM  + G V++A +  ++M  + +   W T+I      
Sbjct: 309 DKNSNKNDSFV------GNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMIVGLAIN 361

Query: 295 GELKLAESITKRLI 308
           G  + A ++   +I
Sbjct: 362 GHGEEALAMFSNMI 375



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 134/314 (42%), Gaps = 22/314 (7%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSE 74
           +L+ C  +  L   K +H   +K     D   +N ++    + E G +    +VFD +  
Sbjct: 13  LLEKCKSMYQL---KQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPH 69

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
                W+ MI GY+++    + + ++  M  S + PD  T    L   T   AL+ GK +
Sbjct: 70  PSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKEL 129

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG------- 187
            +   K   + ++ +  A I MF+ CG VD A K+F   +   +V+W  +++G       
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQF 189

Query: 188 -LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS-ACSHCGLVDKGREYFDSMKNDFGI 245
            ++     L A +  ++ LE G         G++    + CG +D+ +  FD+MK     
Sbjct: 190 KISKMLLVLSACSKLKD-LEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTR--- 245

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAES 302
              +  +  M+D   R      A    ++M    ++ +     +++ AC   G L+L E 
Sbjct: 246 --DVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEW 303

Query: 303 ITKRLIGNEPMHES 316
           +   +  N   ++S
Sbjct: 304 VKTCIDKNSNKNDS 317


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/538 (43%), Positives = 317/538 (58%), Gaps = 64/538 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK-----------------FQFG- 42
           +L    +P+++T+  VLKACAG+  +  G+ VH  V K                 F+ G 
Sbjct: 118 VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGC 177

Query: 43  -------------DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                         D+   NTL+  Y    G ++  R VFD M E++ VSWS MI GYAR
Sbjct: 178 NCIAQKLFDEMVVRDVVSWNTLISGY-CFSGMVDKARMVFDGMMEKNLVSWSTMISGYAR 236

Query: 90  LG-------------------------------LSTDAIDLFRQMQISG-VCPDEITMVT 117
           +G                                  DAI+LFRQMQ  G + P+++T+V+
Sbjct: 237 VGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVS 296

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VLSAC  LGAL++GKW+  FI +  +   + L NAL DM+AKCG V +A  +F  M+ R 
Sbjct: 297 VLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERD 356

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           ++SW+ +I GLAM+G   EA   F EM+E G+ P+D++F+GLL+AC+H GLVDKG EYFD
Sbjct: 357 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFD 416

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            M   +GI PKIEHYGC+VD+L R+GR+ +A   I  MP++ N I+W  L+  C    + 
Sbjct: 417 MMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDA 476

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +  E +  R++  +  H  + V L+++YA + R +     R  M      K PG + IE+
Sbjct: 477 ERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEI 536

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           +N +YEF  GD SH QS  IY M+ E+  KMK AGY P T  V+ +I+EE+KEDAL+ HS
Sbjct: 537 NNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHS 596

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLA+AF L+ T  GT IRIVKNLRVCNDCH A K ISKI  REIVVRDR RFHHFKD
Sbjct: 597 EKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKD 654


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/460 (43%), Positives = 313/460 (68%), Gaps = 2/460 (0%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+  + +  L  GK +H   +K    D+++V  TL++MY +C G I+  R+VFD++ E  
Sbjct: 119 LRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTAC-GDIDASRRVFDKIDEPC 177

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
            V+++A+I   AR   + +A+ LFR++Q  G+ P ++TM+ VLS+C  LG+L++G+W+  
Sbjct: 178 VVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHE 237

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           +++K   +R V +   LIDM+AKCG +D A+ +FR M  R   +W+++I   A HG G +
Sbjct: 238 YVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQ 297

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+++  EM +  V PD++ F+G+L ACSH GLV++G EYF  M N++GI+P I+HYGCMV
Sbjct: 298 AISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMV 357

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R+GR+ EA++FI ++PI+  PI+WRTL+SAC   G +++ + + +R+   +  H  
Sbjct: 358 DLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGG 417

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           +YV+ S++ A+  +W+    +R+ M  +G  KIPG + IE++N ++EF  G+  H  S  
Sbjct: 418 DYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTT 477

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLL-DINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           ++  LDE+ +++K AGYVP TS V   D+ +E+KE  L  HSEKLAI F LL TPPGT I
Sbjct: 478 LHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTI 537

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           R+VKNLRVC DCH+A KFIS I+ R+I++RD  RFHHFKD
Sbjct: 538 RVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKD 577



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 3/192 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P   T   VL +CA +G L+LG+ +H  V K+ F   + V  TL+ MY  C G +
Sbjct: 206 EIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKC-GSL 264

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +    VF +M +RD+ +WSA+I  YA  G    AI +  +M+   V PDEIT + +L AC
Sbjct: 265 DDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYAC 324

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVS 180
           +  G +E G ++      +  +  S+     ++D+  + G +D+A K    +  + T + 
Sbjct: 325 SHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPIL 384

Query: 181 WTSVIAGLAMHG 192
           W ++++  + HG
Sbjct: 385 WRTLLSACSTHG 396



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 138/283 (48%), Gaps = 22/283 (7%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--CEGGIELGRKVFDEMS 73
           ++  C  + +L   K +    +K  + ++ +V    ++   S   +  +E   ++FD+++
Sbjct: 32  LIPKCTTLKEL---KQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQIT 88

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           + + V ++ M  GYARL      I  FR+                L   + + AL  GK 
Sbjct: 89  QPNIVLFNTMARGYARLNDPLRMITHFRR---------------CLRLVSKVKALAEGKQ 133

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +  F  K  V+ ++ +   LI+M+  CGD+D + ++F  ++   +V++ ++I  LA + R
Sbjct: 134 LHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNR 193

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             EA+ALF E+ E G+ P DV  + +LS+C+  G +D GR   + +K  +G    ++   
Sbjct: 194 ANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK-YGFDRYVKVNT 252

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            ++DM  + G + +A    + MP + +   W  +I A    G+
Sbjct: 253 TLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYATHGD 294


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/475 (47%), Positives = 296/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+  T+  +L A  G   L   K VH   +      D+ V N LVHMY  C G
Sbjct: 427 MRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKC-G 484

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                ++VFD+M ER+  +W+ MI G A+ G   +A  LF QM   G+ PD  T V++LS
Sbjct: 485 NTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILS 544

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GALE  K V S      +   + + NAL+ M+AKCG VD A ++F  M  R + S
Sbjct: 545 ACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYS 604

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +I GLA HGRGL+A+ LF +M   G  P+  +FV +LSACSH GLVD+GR  F S+ 
Sbjct: 605 WTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLT 664

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P +EHY CMVD+L R+G+++EA  FI  MPIE     W  L+ AC   G L++A
Sbjct: 665 QDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA 724

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K  +  +P   S YVLLS+IYA    WE+K  +R +M +RG++K PG + IE+DN+
Sbjct: 725 EFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQ 784

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV GD SH +SKEIY  L ++ +++K  GYVP T  VL + ++E KE AL  HSEKL
Sbjct: 785 IHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKL 844

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI + L+ TP   PIR+ KNLRVC+DCH+ATKFISK+  REIV RD  RFHHFKD
Sbjct: 845 AIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKD 899



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 149/297 (50%), Gaps = 5/297 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN+ TY  +LKAC     L  GK +H  +++  F  D+ V+  LV+MY  C G
Sbjct: 21  MRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC-G 79

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  + +FD+M ER+ +SW+ MIGG A  G   +A   F QMQ  G  P+  T V++L+
Sbjct: 80  SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILN 139

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A    GALE  K V S      +   + + NAL+ M+AK G +D A  +F  M  R I S
Sbjct: 140 ANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFS 199

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL--SACSHCGLVDKGREYFDS 238
           WT +I GLA HGRG EA +LF +M   G  P+   ++ +L  SA +  G ++  +E    
Sbjct: 200 WTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKE-VHK 258

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                G I  +     ++ M  + G + +A      M  + + I W  +I      G
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMIGGLAQNG 314



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 165/325 (50%), Gaps = 8/325 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  P+  TY  +L      G     K VH   ++     D+ V +  VHMY  C G
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC-G 384

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  + +FD+++ R+  +W+AMIGG A+     +A+ LF QM+  G  PD  T V +LS
Sbjct: 385 SIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILS 444

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           A     ALE  K V S+ I+  +V+  VG  NAL+ M+AKCG+   A ++F  M  R + 
Sbjct: 445 ANVGEEALEWVKEVHSYAIDAGLVDLRVG--NALVHMYAKCGNTMYAKQVFDDMVERNVT 502

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WT +I+GLA HG G EA +LF +ML  G+ PD   +V +LSAC+  G ++  +E     
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHA 562

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC--ARGEL 297
            N  G++  +     +V M  + G V +A      M +E +   W  +I       RG  
Sbjct: 563 VNA-GLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLD 620

Query: 298 KLAESITKRLIGNEPMHESNYVLLS 322
            L   +  +L G +P   S   +LS
Sbjct: 621 ALDLFVKMKLEGFKPNGYSFVAVLS 645



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 146/305 (47%), Gaps = 30/305 (9%)

Query: 5   GVSPNKFTYPFVLKACA--GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           G  PN  TY  +L A A    G L   K VH    K  F  D+ V N L+HMY  C G I
Sbjct: 227 GCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKC-GSI 285

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +  R VFD M +RD +SW+AMIGG A+ G   +A  +F +MQ  G  PD  T +++L+  
Sbjct: 286 DDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTH 345

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLC------NALIDMFAKCGDVDKALKLFRSMNGR 176
              GA E   WV+  + K  V   VGL       +A + M+ +CG +D A  +F  +  R
Sbjct: 346 VSTGAWE---WVKE-VHKHAVE--VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR 399

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W ++I G+A    G EA++LF +M   G  PD   FV +LSA       + G E  
Sbjct: 400 NVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA-------NVGEEAL 452

Query: 237 DSMKN------DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           + +K       D G++  +     +V M  + G    A +    M +E N   W  +IS 
Sbjct: 453 EWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISG 510

Query: 291 CCARG 295
               G
Sbjct: 511 LAQHG 515



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 2/221 (0%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MIGGYA  G + DA+ ++ QM+  G  P+EIT +++L AC    +L+ GK + + I +  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
               V +  AL++M+ KCG +D A  +F  M  R ++SWT +I GLA +GRG EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           +M   G  P+   +V +L+A +  G ++  +E      N  G+   +     +V M  +S
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKS 179

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G + +A      M +E +   W  +I      G  + A S+
Sbjct: 180 GSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSL 219


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/503 (42%), Positives = 316/503 (62%), Gaps = 34/503 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  GV PN FT+  +LK C     +  GK++H   +K  F  D++V+  L+ +Y     
Sbjct: 66  MLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 57  -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C    G ++  R +FD M ERD V W+ MI GY + 
Sbjct: 122 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 181

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G+  +A+ LFR+M  +   P+E+T+++VLSAC  LGALE G+WV S+IE   +  +V + 
Sbjct: 182 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 241

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DM++KCG ++ A  +F  ++ + +V+W S+I G AM G   EA+ LF+ M   G+ 
Sbjct: 242 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLH 301

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P ++ F+G+LSAC H G V +G + F+ MK+++GI PKIEHYGCMV++L R+G V++A+E
Sbjct: 302 PTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYE 361

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ M IE +P++W TL+ AC   G++ L E I + L+     +   Y+LLS+IYA +  
Sbjct: 362 LVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGN 421

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+   ++R +M   G+KK PG + IE++N+++EF+ G  +H + KEIY ML+E+   +K 
Sbjct: 422 WDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKS 481

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P T  VL DI E +KE +L  HSEKLAIAF L+ T PGT I+IVKNLRVC DCH  
Sbjct: 482 HGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEV 541

Query: 451 TKFISKIYNREIVVRDRHRFHHF 473
           TK ISKI  R+IVVRDR+RFHHF
Sbjct: 542 TKLISKITGRKIVVRDRNRFHHF 564



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 37/267 (13%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++    +F          W+A+I G+A  GL   A++ + QM   GV P+  T  ++L
Sbjct: 23  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C     +E GK + S   K   +  + +   L+D++A+ GDV  A +LF +M  +++V
Sbjct: 83  KLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138

Query: 180 S-------------------------------WTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           S                               W  +I G   +G   EA+ LF  ML+A 
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             P++V  + +LSAC   G ++ GR     ++N+ GI   +     +VDM  + G +++A
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDA 257

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
                K+  + + + W ++I      G
Sbjct: 258 RLVFDKID-DKDVVAWNSMIVGYAMXG 283



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           +A  G +D ++ LF      ++  WT++I G A+ G   +A+  + +ML  GV P+   F
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
             +L  C     ++ G+    S     G    +     ++D+  R G V  A +    MP
Sbjct: 79  SSILKLCP----IEPGKA-LHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 277 IEANPIIWRTLISACCARGELKLA 300
            E + +    +++     GEL  A
Sbjct: 134 -EKSLVSLTAMLTCYAKHGELDAA 156


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/473 (45%), Positives = 306/473 (64%), Gaps = 36/473 (7%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           +Y V P+ FT   VL+AC  + DL+ G+ +HG V K  F                     
Sbjct: 154 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR-------------------- 193

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
                           SW++MI GY + G + +AI LF +M+ +GV  +E+T+V VL+AC
Sbjct: 194 ----------------SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 237

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            DLGAL++G  +  +  +    R+V + N LIDM+ KCG +++A K+F  M  RT+VSW+
Sbjct: 238 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 297

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I GLAMHGR  EA+ LF +M + G+ P+ V F+GLL ACSH GL+ +GR +F SM  D
Sbjct: 298 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 357

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GIIP+IEHYGCMVD+L R+G + EAHEFI  MP++ N ++W  L+ AC     +++AE 
Sbjct: 358 YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 417

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             K L+  +P+++  YV+LS+IYA+  RWE   ++R+ M  R +KK PG + I +D  ++
Sbjct: 418 AIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVH 477

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
           EFV G++SH  +++I++  +E+  +M+  GYVP TS VLLDI E +K   +++HSEKLA+
Sbjct: 478 EFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLAL 537

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            F L+ TP  TPIRI+KNLR+C DCHSA K IS I NREIVVRDR+RFH F D
Sbjct: 538 VFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFND 590



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N+ T   VL ACA +G L+LG  +H    +  F  ++ + NTL+ MY  C G
Sbjct: 218 MEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC-G 276

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVF+EM ER  VSWSAMIGG A  G + +A+ LF  M   G+ P+ +T + +L 
Sbjct: 277 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 336

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+ +G +  G ++  S      +   +     ++D+ ++ G + +A +   +M    NG
Sbjct: 337 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 396

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
              V W +++    +H     A    + +LE   P +D  +V L +  +  G
Sbjct: 397 ---VVWGALLGACRVHKNVEMAEEAIKHLLELD-PLNDGYYVVLSNIYAEAG 444


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/475 (44%), Positives = 303/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++  G  P+ F+ PFV+KAC     L +G+ +H  VLK     D  V +TLV MY  C G
Sbjct: 92  LIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKC-G 150

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  +++FD M ++D V+ + MI GYA  G   ++  LF QM+  G  PD++ MVT+++
Sbjct: 151 MIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVN 210

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   + V  ++  +  +  V L  A+IDM+AKCG +D + ++F  M  + ++S
Sbjct: 211 ACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVIS 270

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I     HG+G EA+ LF  ML +G+ P+ + F+ LL ACSH GLVD G + F  M 
Sbjct: 271 WSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMS 330

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P ++HY CMVD+L R+GR+ +A   I+ M +E +  IW   + AC    ++ LA
Sbjct: 331 VSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLA 390

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K L+  +  +  +Y+LLS+IYA   RW+   KIR +M KR +KKIPG T IE+DN 
Sbjct: 391 EKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNI 450

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IY F  GD SH +S EIYEML  + +K++ AGYVP T+ VL D++EE K   L+ HSEKL
Sbjct: 451 IYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKL 510

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TP GTPIRI KNLRVC DCHS  K +S I  R+I+VRD +RFHHFK+
Sbjct: 511 AIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKE 565



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 6/298 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K VH  V       D+ V N L++M       +     +F++M ERD VSWS MIGG+ +
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAK-HKDLVTAHLLFNKMEERDPVSWSVMIGGFVK 78

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G        FR++  +G  PD  ++  V+ AC D   L +G+ + S + K  ++    +
Sbjct: 79  NGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFV 138

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           C+ L+DM+AKCG +D A +LF  M  + +V+ T +IAG A  G+  E+  LF++M   G 
Sbjct: 139 CSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGF 198

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            PD VA V +++AC+  G ++K R   D +    + +   +E    M+DM  + G +  +
Sbjct: 199 VPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELGTAMIDMYAKCGSIDSS 256

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
            E   +M  + N I W  +I A    G+ + A  +   ++ N  +  +    +S +YA
Sbjct: 257 REIFDRME-QKNVISWSAMIGAYGYHGQGREALELFHMML-NSGIIPNRITFISLLYA 312


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/503 (42%), Positives = 319/503 (63%), Gaps = 34/503 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN  T   VL ACA   D   G+ VH  + + + G+ + + N ++ MY  C G +E  
Sbjct: 233 VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKC-GSVEDA 291

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLG-------------------------------LST 94
           +++FD+M E+D VSW+ M+ GYA++G                                  
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPK 351

Query: 95  DAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
           +A++LF ++Q+S    PDE+T+V+ LSAC  LGA+++G W+  +I+KQ +  +  L  +L
Sbjct: 352 EALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSL 411

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM+ KCGD+ KAL +F S+  + +  W+++IAGLAMHG G +A+ALF +M E  V P+ 
Sbjct: 412 IDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNA 471

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V F  +L ACSH GLV++GR +F+ M+  +G++P ++HY CMVD+L R+G ++EA E I+
Sbjct: 472 VTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE 531

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
           KMP+     +W  L+ AC     + LAE    +LI  EP +   YVLLS+IYAK  +W++
Sbjct: 532 KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDR 591

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
            + +R++M   G+KK PG + IE+D  ++EF+ GD SH  +K+IY  LDE+  +++  GY
Sbjct: 592 VSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGY 651

Query: 394 VPTTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           VP  S +L  + EED KE AL  HSEKLAIAF L+ T    PIRIVKNLRVC DCHS  K
Sbjct: 652 VPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAK 711

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
            +SK+Y+REI++RDR+RFHHF++
Sbjct: 712 LVSKLYDREILLRDRYRFHHFRE 734



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 172/332 (51%), Gaps = 35/332 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+KFT+PF++KA + + +L  GK+ HG V+K   G D+ + N+L+H Y  C G + LG +
Sbjct: 134 PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC-GELGLGYR 192

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  +  RD VSW++MI  + + G   +A++LF++M+   V P+ ITMV VLSAC     
Sbjct: 193 VFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSD 252

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
            E G+WV S+IE+  +  S+ L NA++DM+ KCG V+ A +LF  M  + IVSWT+++ G
Sbjct: 253 FEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVG 312

Query: 188 LA-------------------------------MHGRGLEAVALFEEM-LEAGVPPDDVA 215
            A                                 G+  EA+ LF E+ L     PD+V 
Sbjct: 313 YAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT 372

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            V  LSAC+  G +D G      +K   G+         ++DM C+ G +++A      +
Sbjct: 373 LVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV 431

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRL 307
               +  +W  +I+     G  K A ++  ++
Sbjct: 432 E-RKDVFVWSAMIAGLAMHGHGKDAIALFSKM 462



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 130/276 (47%), Gaps = 4/276 (1%)

Query: 30  KSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H  +L+   F D       +     S    ++  ++VFD++   +  +W+ +I  YA
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 89  RLGLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
                  ++ +F R +  S   PD+ T   ++ A ++L  L  GK     + K ++   V
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + N+LI  +AKCG++    ++F ++  R +VSW S+I      G   EA+ LF+EM   
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            V P+ +  VG+LSAC+     + GR +  S      I   +     M+DM  + G V++
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGR-WVHSYIERNRIGESLTLSNAMLDMYTKCGSVED 290

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           A     KMP E + + W T++      GE   A+ I
Sbjct: 291 AKRLFDKMP-EKDIVSWTTMLVGYAKIGEYDAAQGI 325


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 317/476 (66%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ P+ FTYPFVLKAC+ +  L  G  +H  V K     D+ VQN L+ MYG C G
Sbjct: 122 MLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            IE    VF++M E+   SWS++IG +A + +  + + L   M   G    +E  +V+ L
Sbjct: 181 AIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL 240

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LG+  +G+ +   + + +   +V +  +LIDM+ KCG ++K L +F++M  +   
Sbjct: 241 SACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRY 300

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+T +IAGLA+HGRG EAV +F +MLE G+ PDDV +VG+LSACSH GLV++G + F+ M
Sbjct: 301 SYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRM 360

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +  I P I+HYGCMVD++ R+G +KEA++ I+ MPI+ N ++WR+L+SAC     L++
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + +      +  +Y++L+++YA+  +W    +IR  M ++ + + PG +L+E + 
Sbjct: 421 GEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANR 480

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +Y+FV  DKS    + IY+M+ +M  ++K  GY P  S+VLLD++E++K   L  HS+K
Sbjct: 481 NVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAFAL++T  G+PIRI +NLR+CNDCH+ TKFIS IY REI VRDR+RFHHFKD
Sbjct: 541 LAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKD 596



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE----GGIEL 64
           N+  +  +LK C  + +    K VH  +LK     D    + LV    SC     G +E 
Sbjct: 30  NEQGWLSLLKRCKSMEEF---KQVHAHILKLGLFYDSFCGSNLV---ASCALSRWGSMEY 83

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F ++ E  S  ++ MI G        +A+ L+ +M   G+ PD  T   VL AC+ 
Sbjct: 84  ACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSL 143

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L AL+ G  + + + K  +   V + N LI M+ KCG ++ A  +F  M+ +++ SW+S+
Sbjct: 144 LVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSI 203

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGR 233
           I   A      E + L  +M   G    ++   V  LSAC+H G  + GR
Sbjct: 204 IGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGR 253


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 310/475 (65%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ P   T    L ACA +GDL  GK VH  V +   G DI V N+L+ MY  C+ 
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F+ ++ R  VSW+AMI GYA+ G  ++A++ F +M+  G+ PD  TMV+V+ 
Sbjct: 400 -VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L      KW+   I +  +++++ +  AL+DM++KCG +  A KLF  ++ R +++
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT 518

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  A+ LF++M +  V P+D+ ++ ++SACSH GLVD+G  +F SMK
Sbjct: 519 WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P ++HYG MVD+L R+GR+KEA +FI+ MPI     ++  ++ AC     +++ 
Sbjct: 579 QDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVG 638

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L    P     +VLL++IYA   +W K  ++R+ M+K+G+KK PG +++EL NE
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNE 698

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  +H QSK IY  L+E+  ++K AGYVP T+ ++LD+ ++ +E  LN HSEKL
Sbjct: 699 VHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTN-LILDVEDDVQEQLLNSHSEKL 757

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT I + KNLRVC DCH+ATK+IS +  REI+VRD  RFHHFK+
Sbjct: 758 AIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKN 812



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 163/333 (48%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  P+  T   VL A A +G L +GKS+HG  ++  F   +++   L  MY  C G
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKC-G 297

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R +FD M ++  VSW++M+ GY + G    AI +F +M   G+ P  +T++  L 
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALH 357

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG LE GK+V  F+++  +   + + N+LI M++KC  VD A  +F ++NGRT VS
Sbjct: 358 ACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS 417

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC----------------- 223
           W ++I G A +GR  EA+  F EM   G+ PD    V ++ A                  
Sbjct: 418 WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 224 ------------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                             S CG +   R+ FD M +D  +I     +  M+D     G  
Sbjct: 478 RSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----WNAMIDGYGTHGLG 532

Query: 266 KEAHEFIQKM---PIEANPIIWRTLISACCARG 295
           + A +   KM    +E N I + ++ISAC   G
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 176/347 (50%), Gaps = 15/347 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++LK C    DL  GK +HG ++   F  ++     +V+MY  C   I+  
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ-IDDA 201

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+FD M ERD VSW+ +I G+++ G +  A++L  +MQ  G  PD IT+VTVL A  D+
Sbjct: 202 YKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV 261

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G L VGK +  +  +    + V +  AL DM++KCG V+ A  +F  M+ +T+VSW S++
Sbjct: 262 GLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMM 321

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G   +G   +A+A+FE+MLE G+ P  V  +  L AC+  G +++G+ +     +   +
Sbjct: 322 DGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK-FVHKFVDQLNL 380

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              I     ++ M  +  RV  A +    +    + + W  +I      G +  A +   
Sbjct: 381 GSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSWNAMILGYAQNGRVSEALNCFS 439

Query: 306 RL--IGNEPMHESNYVLLSHIYA-------KLLRWEKKTKIREVMDK 343
            +  +G +P    ++ ++S I A       +  +W     IR  +DK
Sbjct: 440 EMKSLGMKP---DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDK 483



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 5/262 (1%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
           Q  LV ++ S  G I    +VF+ + ++    +  M+ GYA+      A+    +M+   
Sbjct: 84  QTKLVSLF-SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD 142

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V P       +L  C D   L+ GK +   +       +V     +++M+AKC  +D A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           K+F  M  R +VSW ++IAG + +G   +A+ L   M + G  PD +  V +L A +  G
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 228 LVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           L+  G+     +++  F  +  I     + DM  + G V+ A      M  +   + W +
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNIS--TALADMYSKCGSVETARLIFDGMD-QKTVVSWNS 319

Query: 287 LISACCARGELKLAESITKRLI 308
           ++      GE + A ++ ++++
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKML 341


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 307/475 (64%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ++  G  P+ +T PFV++AC  + +L +G+ +H  V KF    D  V   LV MYG C  
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             IE  R +FD+M ERD V+W+ MIGGYA  G + +++ LF +M+  GV PD++ MVTV+ 
Sbjct: 887  -IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 945

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC  LGA+   + ++ +I+++     V L  A+IDM AKCG V+ A ++F  M  + ++S
Sbjct: 946  ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 1005

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W+++IA    HG+G +A+ LF  ML +G+ P+ +  V LL ACSH GLV++G  +F  M 
Sbjct: 1006 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMW 1065

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             D+ +   ++HY C+VD+L R+GR+ EA + I  M  E +  +W   + AC    ++ LA
Sbjct: 1066 EDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLA 1125

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  +P +  +Y+LLS+IYA   RWE   KIR++M +R +KKIPG T IE+DN+
Sbjct: 1126 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNK 1185

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
             ++F  GD +H +SKEIYEML  +G K++  GYVP T+ VL D++EE K   L  HSEKL
Sbjct: 1186 SHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKL 1245

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIAF L+ TP  TPIRI+KNLRVC DCH+  K +S I  R I+VRD +RFHHFK+
Sbjct: 1246 AIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKE 1300



 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 282/442 (63%), Gaps = 1/442 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++  G  P+ +T PFV++AC  + +L +G+ +H  V KF    D  V   LV MY  C  
Sbjct: 151 LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 210

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD+M ERD V+W+ MIGGYA  G + +++ LF +M+  GV PD++ MVTV+ 
Sbjct: 211 -IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 269

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   + ++ +I+++     V L  A+IDM+AKCG V+ A ++F  M  + ++S
Sbjct: 270 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 329

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IA    HG+G +A+ LF  ML +G+ PD +    LL ACSH GLV++G  +F SM 
Sbjct: 330 WSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMW 389

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ +   ++HY C+VD+L R+GR+ EA + I+ M IE +  +W   + AC    ++ LA
Sbjct: 390 EDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLA 449

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     L+  +  +  +YVLLS+IYA   RWE   KIR++M +R +KK PG T IE+DN+
Sbjct: 450 EKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNK 509

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++F  GD +H +SKEIYEML  +  K++  GYVP T+ VL D++EE K   L  HSEKL
Sbjct: 510 SHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKL 569

Query: 421 AIAFALLKTPPGTPIRIVKNLR 442
           AIAF L+ TP  TPIRI+KNLR
Sbjct: 570 AIAFGLIATPEHTPIRIIKNLR 591



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 159/315 (50%), Gaps = 10/315 (3%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F + A     +L   + VH         ++I V N L++ Y S    ++    +FD M  
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY-SYYRALDDAYGLFDGMCV 122

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           RDSVSWS M+GG+A++G   +    FR++   G  PD  T+  V+ AC DL  L++G+ +
Sbjct: 123 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLI 182

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
              + K  ++    +C AL+DM+ KC +++ A  LF  M  R +V+WT +I G A  G+ 
Sbjct: 183 HHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKA 242

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEH 251
            E++ LFE+M E GV PD VA V ++ AC+  G + K R   +Y    K    +I     
Sbjct: 243 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT-- 300

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
              M+DM  + G V+ A E   +M  E N I W  +I+A    G+ + A  +   ++ + 
Sbjct: 301 --AMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMML-SS 356

Query: 312 PMHESNYVLLSHIYA 326
            M      L S +YA
Sbjct: 357 GMLPDKITLASLLYA 371



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 15/269 (5%)

Query: 31   SVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
            SVHG +       ++ V N LV  Y S    ++    +FD M  RDSVSWS M+GG+A++
Sbjct: 762  SVHGML------QNLIVANKLVXFY-SYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 91   GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            G   +    FR++   G  PD  T+  V+ AC DL  L++G+ +   + K  ++    +C
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 151  NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
             AL+DM+ KC +++ A  LF  M  R +V+WT +I G A  G   E++ LF++M E GV 
Sbjct: 875  AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 211  PDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            PD VA V ++ AC+  G + K R   +Y    K    +I        M+DM  + G V+ 
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT----AMIDMHAKCGCVES 990

Query: 268  AHEFIQKMPIEANPIIWRTLISACCARGE 296
            A E   +M  E N I W  +I+A    G+
Sbjct: 991  AREIFDRME-EKNVISWSAMIAAYGYHGQ 1018


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/432 (47%), Positives = 301/432 (69%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT++H Y +  G + L R++FD   +RD+ SWS+MI  YA+   S +A++L+R+M
Sbjct: 53  DLVSWNTMIHGY-AMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM 111

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
             + + PD IT+V+V+SAC+DLGAL VG  V  F+E   +   + L  ALIDM+AKCGD+
Sbjct: 112 HAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDI 171

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A ++F  M  + + +W+S+I GLA HG G E+++LF +M+  G+ P+ V FVG+L AC
Sbjct: 172 ESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIAC 231

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +H GLV +G++YF SM    GI P +EHYGCMVD+L RSG V+EA + I+ M  E + II
Sbjct: 232 THVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTII 291

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           WR L+ AC     +++AE    +L   +P+ + +YVLLS+IYA+   WE   ++R+ + +
Sbjct: 292 WRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRR 351

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
             +++IPG + IE D +I+EFV GD+ H +SKEIY +L+EM  ++K+AGY P T  VL D
Sbjct: 352 DNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQD 411

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           I+E+ KE +L +HSEKLAIAFALL TP  + IRI KNLR C DCHSA K IS +Y+R+++
Sbjct: 412 IDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLI 471

Query: 464 VRDRHRFHHFKD 475
           VRDR+RFHHF +
Sbjct: 472 VRDRNRFHHFSE 483



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   V+ AC+ +G L +G  VH  V   +   D+ +   L+ MY  C G IE  ++
Sbjct: 118 PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKC-GDIESAQR 176

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M E+D  +WS+MI G A  GL  +++ LF +M   G+ P+ +T V VL ACT +G 
Sbjct: 177 VFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGL 236

Query: 128 LEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSV 184
           +  G K+  S  E   +  +V     ++D+  + G V++A +L RSM     TI+ W ++
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTII-WRAL 295

Query: 185 IAGLAMH 191
           +    +H
Sbjct: 296 LGACRIH 302



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 33/175 (18%)

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG------------ 192
           R V LCN ++  +    +V +A K+F  M  R +VSW ++I G AM G            
Sbjct: 21  RDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGT 80

Query: 193 -------------------RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
                              R  EA+ L+ EM  A + PD +  V ++SACS  G +  G 
Sbjct: 81  EDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGA 140

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           E    ++++  I   ++    ++DM  + G ++ A     +MP E +   W ++I
Sbjct: 141 EVHRFVESN-RIELDLKLGTALIDMYAKCGDIESAQRVFDRMP-EKDVQTWSSMI 193


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/504 (43%), Positives = 321/504 (63%), Gaps = 30/504 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+         TY  VL AC    DL LG  VH  VL+     D  V+N LV MY  C  
Sbjct: 152 MVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGD 211

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++  R +FD M ERD+++W+AMI GY ++
Sbjct: 212 MDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQV 271

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   DA++ FR MQI  V  DE TMV+V++AC  LGALE G+W   ++ +  +   V + 
Sbjct: 272 GRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVG 331

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALIDM++KCG +++AL +F+ M+ R   +WT++I GLA++GRG EA+ +F  ML A   
Sbjct: 332 NALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQT 391

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD+V FVG+L+AC+H GLVDKGRE+F SM   + I P + HYGC++D+L R+G++KEA +
Sbjct: 392 PDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALD 451

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I KMP++ N  IW TL+++C   G  ++ E   +RL+  +P + + Y+LLS++YAK  R
Sbjct: 452 TIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNR 511

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+   +IR+++ ++G+KK PG ++IE++  I+EFV  D+SH  +KEIY  L+ +   ++ 
Sbjct: 512 WKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRN 571

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGYVP  +EVL+++ EE+K+  L  HSEKLA+ FALL +     IRIVKNLR+C DCH+A
Sbjct: 572 AGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNA 631

Query: 451 TKFISKIYNREIVVRDRHRFHHFK 474
            K ISK+Y RE++VRDR RFHHF+
Sbjct: 632 IKLISKLYGREVIVRDRTRFHHFR 655



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 141/337 (41%), Gaps = 43/337 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKS-----VHGAVLKFQFGDDIHVQNTLVHMY 55
           ML  G  P+ +T+P +LKA A      +  +     +H  V+KF    + H  ++L+ MY
Sbjct: 42  MLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMY 101

Query: 56  GSCEGGIELGRKVFD---EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112
            +   G      +            V W+A+I G+ R G    +   F  M  +      
Sbjct: 102 AARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATA 161

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           +T V+VLSAC     L +G  V   + +  V     + NAL+DM+A+CGD+D A  LF  
Sbjct: 162 VTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEG 221

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-------------------------- 206
           M  R++ SWTSVI+GL   G+   A  LF+ M E                          
Sbjct: 222 MQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETF 281

Query: 207 -----AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
                  V  D+   V +++AC+  G ++ G E+        GI   +     ++DM  +
Sbjct: 282 RYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSK 340

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLI--SACCARGE 296
            G ++ A +  + M    +   W  +I   A   RGE
Sbjct: 341 CGSIERALDVFKDMH-NRDKFTWTAIILGLAVNGRGE 376


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/475 (43%), Positives = 312/475 (65%), Gaps = 3/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+P+ +T+  +LKACA       G+  H   +K       +V+ TL++MY  C G
Sbjct: 124 MLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAEC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R  F        VS++AMI    R     +A+ LFR+MQ  G+ P  +T+++VLS
Sbjct: 183 DARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLS 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL++G+W+  ++ K  +   V +  AL+DM+AKCG ++ A+ +F+ M  R   +
Sbjct: 243 ACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQA 302

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +I   A HG G EA++LFEEM + G+ PDD+ F+GLL ACSH GLV +G  YFD MK
Sbjct: 303 WSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMK 362

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+P I+HYGC+ D+L RSG+++ A++FI ++PI   PI+WRTL+SAC   G+++L 
Sbjct: 363 -DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELG 421

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A    WE+  ++R++M  +G+ K+PG + IE+DN 
Sbjct: 422 KRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNT 481

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD  H +S+E  +M+DE+  ++K  GY+P TS V  +++ EE+K  +L  HSEK
Sbjct: 482 VHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEK 541

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF LL T PG  +R+VKNLRVC DCHS  KF+S ++NR I++RD +RFHHF+
Sbjct: 542 LAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFE 596



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 50  TLVHMYGSCEGGIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDA-----IDLFRQM 103
           TL    G+    +   R+VFD +++  D+V ++ ++ GYAR   S+ +     + +F +M
Sbjct: 65  TLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRM 124

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              GV PD  T V++L AC    A E G+   +   K        +   LI+M+A+CGD 
Sbjct: 125 LEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDA 184

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A   F   +G  +VS+ ++IA      R  EA+ LF EM   G+ P  V  + +LSAC
Sbjct: 185 RAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSAC 244

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +  G +  GR   D ++   G+   ++    +VDM  + G +++A    Q M    +   
Sbjct: 245 ALLGALQLGRWLHDYVRK-LGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGME-SRDRQA 302

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           W  +I A    G  + A S+ + +   + M   +   L  +YA
Sbjct: 303 WSVMIVAYANHGYGREAISLFEEM-KKQGMKPDDITFLGLLYA 344


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/500 (41%), Positives = 320/500 (64%), Gaps = 30/500 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SCE 59
           + P+ +T  F+++AC G+     G  VHG  ++  F +D HVQ  L+ +Y       SC 
Sbjct: 104 LKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 163

Query: 60  ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                                   G +   RK+F+ M ERD ++W+AMI GYA++G S +
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+++F  MQ+ GV  + + M++VLSACT LGAL+ G+W  S+IE+  +  +V L   L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           ++AKCGD++KA+++F  M  + + +W+S + GLAM+G G + + LF  M + GV P+ V 
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FV +L  CS  G VD+G+ +FDSM+N+FGI P++EHYGC+VD+  R+GR+++A   IQ+M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ +  +W +L+ A      L+L    +K+++  E  +   YVLLS+IYA    W+  +
Sbjct: 404 PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVS 463

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
            +R+ M  +G++K PG +++E++ E++EF  GDKSH +  +I  +  ++ R+++ AGY  
Sbjct: 464 HVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKA 523

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            T+ V+ DI+EE+KEDAL  HSEK AIAF ++      PIRIVKNLRVC DCH  +  IS
Sbjct: 524 DTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMIS 583

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           KI+NREI+VRDR+RFHHFKD
Sbjct: 584 KIFNREIIVRDRNRFHHFKD 603



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N      VL AC  +G L+ G+  H  + + +    + +  TLV +Y  C G +E 
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKC-GDMEK 293

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF  M E++  +WS+ + G A  G     ++LF  M+  GV P+ +T V+VL  C+ 
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
           +G ++ G +  +S   +  +   +     L+D++A+ G ++ A+ + + M  +   + W+
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413

Query: 183 SVIAGLAMHGRGLEAVALFEEMLE 206
           S++    M+      V   ++MLE
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLE 437


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 314/476 (65%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+P+ +T+  +LKACA       G+  H   +K    D  +V+ TL++MY  C G
Sbjct: 124 MLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAEC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R +F        VS++AMI    R     +A+ LFR+MQ  G+ P  +T+++VLS
Sbjct: 183 DARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLS 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE+G+WV  ++ K  +   V +  ALIDM+AKCG ++ A+ +F+ M  +   +
Sbjct: 243 ACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQA 302

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +I   A HG G EA++LFEEM + G+ PDD+ F+G+L ACSH GLV +G +YFD MK
Sbjct: 303 WSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMK 362

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+P I+HYGC+ D+L RSG+++ A++FI ++PI   PI+WRTL+SAC   G+ +L 
Sbjct: 363 -DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELG 421

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + +R++  +  H  +YV+ S++ A    WE+   +R++M ++G+ K+PG + IE+DN 
Sbjct: 422 KRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNT 481

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
           ++EF  GD  H +S+E  +M+DE+  ++K  GYVP TS V  +++ EE+K  +L  HSEK
Sbjct: 482 VHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEK 541

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LL T PG  +R+VKNLRVC DCHS  K +S ++NR I++RD +RFHHF++
Sbjct: 542 LAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEE 597



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 9/271 (3%)

Query: 62  IELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTD-----AIDLFRQMQISGVCPDEITM 115
           +   R+VFD +    D+V ++ ++ GYAR    +      A+ +F +M   GV PD  T 
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTF 136

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           V++L AC    A E G+   +   K        +   LI+M+A+CGD   A  +F   +G
Sbjct: 137 VSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDG 196

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
             +VS+ ++IA      R  EA+ LF EM   G+ P  V  + +LSAC+  G ++ GR  
Sbjct: 197 GCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWV 256

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            D ++   G+   ++    ++DM  + G +++A +  Q M    +   W  +I A    G
Sbjct: 257 HDYVRK-IGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGME-SKDRQAWSVMIVAYANHG 314

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
             + A S+ + +   E M   +   L  +YA
Sbjct: 315 YGREAISLFEEM-KKEGMKPDDITFLGVLYA 344


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/490 (43%), Positives = 313/490 (63%), Gaps = 33/490 (6%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE----- 71
           L AC+ + ++ +G+ VHG  +K    D + ++N L+H+Y SC G I   R++FD+     
Sbjct: 277 LSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC-GEIVDARRIFDDGGELL 335

Query: 72  ---------------------------MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
                                      M E+D VSWSAMI GYA+    ++A+ LF++MQ
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
           + GV PDE  +V+ +SACT L  L++GKW+ ++I +  +  +V L   LIDM+ KCG V+
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            AL++F +M  + + +W +VI GLAM+G   +++ +F +M + G  P+++ F+G+L AC 
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           H GLV+ GR YF+SM ++  I   I+HYGCMVD+L R+G +KEA E I  MP+  +   W
Sbjct: 516 HMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATW 575

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+ AC    + ++ E + ++LI  +P H+  +VLLS+IYA    W    +IR +M + 
Sbjct: 576 GALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQH 635

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+ K PG ++IE +  ++EF+ GDK+H Q  +I  MLD +  K+K  GYVPTTSEV LDI
Sbjct: 636 GVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDI 695

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +EE+KE AL +HSEKLA+AF L+   P TPIR+ KNLR+CNDCH+  K ISK ++R+IVV
Sbjct: 696 DEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVV 755

Query: 465 RDRHRFHHFK 474
           RDRHRFHHFK
Sbjct: 756 RDRHRFHHFK 765



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 142/288 (49%), Gaps = 43/288 (14%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
            N+++ ++G  +G +E  R++F+ +   ERD VSWSAM+  Y +  +  +A+ LF +M+ 
Sbjct: 205 SNSMIALFGR-KGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKG 263

Query: 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
           SGV  DE+ +V+ LSAC+ +  +E+G+WV     K  V   V L NALI +++ CG++  
Sbjct: 264 SGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVD 323

Query: 166 ALK--------------------------------LFRSMNGRTIVSWTSVIAGLAMHGR 193
           A +                                LF SM  + +VSW+++I+G A H  
Sbjct: 324 ARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHEC 383

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIE 250
             EA+ALF+EM   GV PD+ A V  +SAC+H   +D G+    Y    K    +I    
Sbjct: 384 FSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTT 443

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
               ++DM  + G V+ A E    M  E     W  +I      G ++
Sbjct: 444 ----LIDMYMKCGCVENALEVFYAME-EKGVSTWNAVILGLAMNGSVE 486



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 139/316 (43%), Gaps = 74/316 (23%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +TYP +L+ CA       G+ +H   +   F  D++V+NTL+++Y  C G +   R+
Sbjct: 103 PDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVC-GSVGSARR 161

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+E    D VSW+ ++ GY + G   +A  +F  M      P+  T+ +          
Sbjct: 162 VFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM------PERNTIAS---------- 205

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT--IVSWTSVI 185
                                  N++I +F + G V+KA ++F  + GR   +VSW++++
Sbjct: 206 -----------------------NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-----------E 234
           +    +  G EA+ LF EM  +GV  D+V  V  LSACS    V+ GR           E
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 235 YFDSMKN--------------------DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            + S+KN                    D G +  +  +  M+    R G +++A      
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362

Query: 275 MPIEANPIIWRTLISA 290
           MP E + + W  +IS 
Sbjct: 363 MP-EKDVVSWSAMISG 377



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +GV P++      + AC  +  L+LGK +H  + + +   ++ +  TL+ MY  C G
Sbjct: 394 MQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKC-G 452

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VF  M E+   +W+A+I G A  G    ++++F  M+ +G  P+EIT + VL 
Sbjct: 453 CVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLG 512

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC  +G +  G+ +  S I +  +  ++     ++D+  + G + +A +L  SM     +
Sbjct: 513 ACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDV 572

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            +W +++     H        L  ++++  + PD   F  LLS
Sbjct: 573 ATWGALLGACRKHRDNEMGERLGRKLIQ--LQPDHDGFHVLLS 613


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/478 (43%), Positives = 309/478 (64%), Gaps = 30/478 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC---- 58
           +Y V P+ FT   VL+AC  + DL+ G+ +HG V K  F  ++++QN +VH+Y SC    
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180

Query: 59  --------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                     +G  E    +F  M ER+  SW++MI GY + G 
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           + +AI LF +M+ +GV  +E+T+V VL+AC DLGAL++G  +  +  +    R+V + N 
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT 300

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LIDM+ KCG +++A K+F  M  RT+VSW+++I GLAMHGR  EA+ LF +M + G+ P+
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V F+GLL ACSH GL+ +GR +F SM  D+GIIP+IEHYGCMVD+L R+G + EAHEFI
Sbjct: 361 GVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFI 420

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP++ N ++W  L+ AC     +++AE   K L+  +P+++  YV+LS+IYA+  RWE
Sbjct: 421 LNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWE 480

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              ++R+ M  R +KK PG + I +D  ++EFV G++SH  +++I++  +E+  +M+  G
Sbjct: 481 DTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKG 540

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           YVP TS VLLDI E +K   +++HSEKLA+ F L+ TP  TPIRI+KNLR+C DCHSA
Sbjct: 541 YVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSA 598



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N+ T   VL ACA +G L+LG  +H    +  F  ++ + NTL+ MY  C G
Sbjct: 251 MEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC-G 309

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVF+EM ER  VSWSAMIGG A  G + +A+ LF  M   G+ P+ +T + +L 
Sbjct: 310 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 369

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+ +G +  G ++  S      +   +     ++D+ ++ G + +A +   +M    NG
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
              V W +++    +H     A    + +LE   P +D  +V L +  +  G
Sbjct: 430 ---VVWGALLGACRVHKNVEMAEEAIKHLLELD-PLNDGYYVVLSNIYAEAG 477



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 42/320 (13%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD--EMSERDSVSWSAMIGGY 87
           + VH  ++K      I +  T V +  +        +++F+  E  + ++  W++ +   
Sbjct: 45  RQVHAQIIKTNAPLSI-LPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKAL 103

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           A      DAI LF +++   VCPD  T  +VL AC +L  L  G+ +   +EK     ++
Sbjct: 104 AEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNL 163

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIV---------------------------- 179
            L N ++ ++A CG++ +A  LF  M  R +V                            
Sbjct: 164 YLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPER 223

Query: 180 ---SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
              SWTS+IAG    G+  EA+ LF +M EAGV  ++V  V +L+AC+  G +D G    
Sbjct: 224 NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   N  G    +     ++DM  + G ++EA +  ++M  E   + W  +I      G 
Sbjct: 284 E-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGR 341

Query: 297 ----LKLAESITKRLIGNEP 312
               L+L   +++  +G EP
Sbjct: 342 AEEALRLFSDMSQ--VGIEP 359


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/486 (44%), Positives = 315/486 (64%), Gaps = 19/486 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIEL 64
           + PN FT+P + KACA    L  G  +H  VLKF Q   D  VQN+L++ Y    G + +
Sbjct: 100 LQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAK-YGKLCV 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLG-------------LSTDAIDLFRQMQISGVCPD 111
            R +FD++SE D  +W+ M+  YA+               +S +A+ LF  MQ+S + P+
Sbjct: 159 SRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPN 218

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKL 169
           E+T+V ++SAC++LGAL  G W   ++ +    +NR VG   AL+DM++KCG ++ A +L
Sbjct: 219 EVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVG--TALVDMYSKCGCLNLACQL 276

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  ++ R    + ++I G A+HG G +A+ L+  M    + PD    V  + ACSH GLV
Sbjct: 277 FDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLV 336

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           ++G E F+SMK   G+ PK+EHYGC++D+L R+GR+KEA E +Q MP++ N I+WR+L+ 
Sbjct: 337 EEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLG 396

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKI 349
           A    G L++ E+  K LI  EP    NYVLLS++YA + RW    ++R +M   G+ K+
Sbjct: 397 AAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKL 456

Query: 350 PGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDK 409
           PG +L+E++  ++EF+ GDK+H  SKEIY  + E+ R++ + G+ P TSEVL D+ EEDK
Sbjct: 457 PGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDK 516

Query: 410 EDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHR 469
           ED L+ HSE+LAIAFAL+ +    PIRI+KNLRVC DCH+ TK IS  Y R+I+VRDR+R
Sbjct: 517 EDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNR 576

Query: 470 FHHFKD 475
           FHHFKD
Sbjct: 577 FHHFKD 582


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 308/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ P   T    L ACA +GDL  GK VH  V +   G DI V N+L+ MY  C+ 
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F+ ++ R  VSW+AMI GYA+ G  ++A++ F +M+  G+ PD  TMV+V+ 
Sbjct: 400 -VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L      KW+   I +  +++++ +  AL+DM++KCG +  A KLF  ++ R +++
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT 518

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  A+ LF++M +  V P+D+ ++ ++SACSH GLVD+G  +F SMK
Sbjct: 519 WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P ++HYG MVD+L R+GR+KEA +FI+ MPI     ++     AC     +++ 
Sbjct: 579 QDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVG 638

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L    P     +VLL++IYA   +W K  ++R+ M+K+G+KK PG +++EL NE
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNE 698

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  +H QSK IY  L+E+  ++K AGYVP T+ ++LD+ ++ +E  LN HSEKL
Sbjct: 699 VHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTN-LILDVEDDVQEQLLNSHSEKL 757

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT I + KNLRVC DCH+ATK+IS +  REI+VRD  RFHHFK+
Sbjct: 758 AIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKN 812



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 163/333 (48%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  P+  T   VL A A +G L +GKS+HG  ++  F   +++   L  MY  C G
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKC-G 297

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R +FD M ++  VSW++M+ GY + G    AI +F +M   G+ P  +T++  L 
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALH 357

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG LE GK+V  F+++  +   + + N+LI M++KC  VD A  +F ++NGRT VS
Sbjct: 358 ACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS 417

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC----------------- 223
           W ++I G A +GR  EA+  F EM   G+ PD    V ++ A                  
Sbjct: 418 WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 224 ------------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                             S CG +   R+ FD M +D  +I     +  M+D     G  
Sbjct: 478 RSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----WNAMIDGYGTHGLG 532

Query: 266 KEAHEFIQKM---PIEANPIIWRTLISACCARG 295
           + A +   KM    +E N I + ++ISAC   G
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 176/347 (50%), Gaps = 15/347 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++LK C    DL  GK +HG ++   F  ++     +V+MY  C   I+  
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ-IDDA 201

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+FD M ERD VSW+ +I G+++ G +  A++L  +MQ  G  PD IT+VTVL A  D+
Sbjct: 202 YKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV 261

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G L VGK +  +  +    + V +  AL DM++KCG V+ A  +F  M+ +T+VSW S++
Sbjct: 262 GLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMM 321

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G   +G   +A+A+FE+MLE G+ P  V  +  L AC+  G +++G+ +     +   +
Sbjct: 322 DGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK-FVHKFVDQLNL 380

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              I     ++ M  +  RV  A +    +    + + W  +I      G +  A +   
Sbjct: 381 GSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSWNAMILGYAQNGRVSEALNCFS 439

Query: 306 RL--IGNEPMHESNYVLLSHIYA-------KLLRWEKKTKIREVMDK 343
            +  +G +P    ++ ++S I A       +  +W     IR  +DK
Sbjct: 440 EMKSLGMKP---DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDK 483



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 5/262 (1%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
           Q  LV ++ S  G I    +VF+ + ++    +  M+ GYA+      A+    +M+   
Sbjct: 84  QTKLVSLF-SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD 142

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V P       +L  C D   L+ GK +   +       +V     +++M+AKC  +D A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           K+F  M  R +VSW ++IAG + +G   +A+ L   M + G  PD +  V +L A +  G
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 228 LVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           L+  G+     +++  F  +  I     + DM  + G V+ A      M  +   + W +
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNIS--TALADMYSKCGSVETARLIFDGMD-QKTVVSWNS 319

Query: 287 LISACCARGELKLAESITKRLI 308
           ++      GE + A ++ ++++
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKML 341


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/472 (46%), Positives = 301/472 (63%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIE 63
           G+ P+ FT   VL ACA + DL  G++V  A  + +   + + V    + +Y  C G +E
Sbjct: 36  GMRPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKC-GEME 94

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             R VFDEM  RD+V+W AM+GGYA  G   +A+DLF  MQ+ G  PD  T+V  LSACT
Sbjct: 95  KARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACT 154

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGAL++G+     +    V  +  L  ALIDM+AKCG   +A  +F+ M  R I+ W +
Sbjct: 155 RLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNA 214

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I GL M G    A AL  +M ++GV  +D  F+GLL +C+H GLV+ GR+YF +M + +
Sbjct: 215 MILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVY 274

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            I P+IEHYGCMVD+  R+G ++EAH+ I  MP+ AN ++W  L+  C       LAE  
Sbjct: 275 RISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHA 334

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            K+LI  EP +  NYV+LS+IY+   RWE   K+R  M  +G++K+P S+ +ELD ++++
Sbjct: 335 LKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHK 394

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD SH  S +IY  LDE+G +MK  GY PTT  V+ D+  E+KE+ L  HSEK+AIA
Sbjct: 395 FYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIA 454

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F+L+ T PG  IR+ KNLRVC DCHSA K IS+I  REIVVRD +RFH F+D
Sbjct: 455 FSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRD 506



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 3/237 (1%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M    +VSW+A+I  Y   G + +AI + R+   SG+ PD  T V VL+AC  +  LE G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 132 KWVESFI-EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           + V +   +++ V  SV +  A +D++ KCG+++KA  +F  M  R  V+W +++ G A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           +G   EA+ LF  M   G  PD    VG LSAC+  G +D GR+    +  D  ++    
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWD-EVLGNPV 179

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
               ++DM  + G   EA    Q+M +E + I+W  +I      G  K+A ++  ++
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMILGLGMTGHEKIAFALVGQM 235


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 314/476 (65%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ P+ FTYPFVLKAC+ +  L  G  +H  V       D+ VQN L+ MYG C G
Sbjct: 122 MLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            IE    VF++M E+   SWS++IG +A + +  + + L   M   G    +E  +V+ L
Sbjct: 181 AIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSAL 240

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LG+  +G+ +   + + +   +V +  +LIDM+ KCG ++K L +F++M  +   
Sbjct: 241 SACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRY 300

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+T +IAGLA+HGRG EA+ +F +MLE G+ PDDV +VG+LSACSH GLV +G + F+ M
Sbjct: 301 SYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRM 360

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +  I P I+HYGCMVD++ R+G +KEA++ I+ MPI+ N ++WR+L+SAC     L++
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E     +      +  +Y++L+++YA+  +W    +IR  M ++ + + PG +L+E + 
Sbjct: 421 GEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANR 480

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +Y+FV  DKS  Q + IY+M+ +M  ++K  GY P  S+VLLD++E++K   L  HS+K
Sbjct: 481 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAFAL++T  G+P+RI +NLR+CNDCH+ TKFIS IY REI VRD +RFHHFKD
Sbjct: 541 LAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKD 596



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 11/236 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE--- 59
           E     N+  +  +LK C  + +    K VH  +LK     D    + LV    SC    
Sbjct: 24  ELNAKFNEQGWLSLLKRCKSMEEF---KKVHAHILKLGLFYDSFCGSNLV---ASCALSR 77

Query: 60  -GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +E    +F ++ E  S  ++ MI G        +A+ L+ +M   G+ PD  T   V
Sbjct: 78  WGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC+ L AL+ G  + + +    +   V + N LI M+ KCG ++ A  +F  M+ +++
Sbjct: 138 LKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGR 233
            SW+S+I   A      E + L  +M   G    ++   V  LSAC+H G  + GR
Sbjct: 198 ASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGR 253


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/490 (43%), Positives = 312/490 (63%), Gaps = 30/490 (6%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-GSCE--------------- 59
           VL ACA +  +  GK +HG V++      +++QN L+HMY GS E               
Sbjct: 310 VLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLD 369

Query: 60  --------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
                         G +E  R +FD M E+D VSWSA+I GYA+    ++ + LF +MQ+
Sbjct: 370 QISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQL 429

Query: 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
             + PDE  +V+V+SACT L AL+ GKWV ++I K  +  +V L   L+DM+ KCG V+ 
Sbjct: 430 GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVEN 489

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           AL++F  M  + + SW ++I GLA++G    ++ +F EM   GV P+++ F+G+L AC H
Sbjct: 490 ALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRH 549

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            GLVD+GR +F SM    GI P ++HYGCMVD+L R+G + EA + I+ MP+  +   W 
Sbjct: 550 MGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWG 609

Query: 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345
            L+ AC   G+ ++ E + ++LI  +P H+  +VLLS+I+A    WE   ++R +M ++G
Sbjct: 610 ALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQG 669

Query: 346 MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
           + K PG +LIE +  ++EF+ GDK+H    ++  ML+EM +++K  GY P T+EV LDI+
Sbjct: 670 VVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDID 729

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           EE+KE  L +HSEKLAIAF LL   P TPIRI+KNLR+CNDCH+A K ISK Y REIVVR
Sbjct: 730 EEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVR 789

Query: 466 DRHRFHHFKD 475
           DRHRFH+FK+
Sbjct: 790 DRHRFHYFKE 799



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 172/388 (44%), Gaps = 96/388 (24%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG-KSVHGAVLKFQFGDDIHVQNTLVHMYGSC- 58
           M++  V P+ +TYP V++ACA +  L  G K +H  VLK  F  D++VQNTL++MY  C 
Sbjct: 132 MVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCG 190

Query: 59  -----------------------------EGGIELGRKVFDEMSER-------------- 75
                                        +G +E  + +FD+M +R              
Sbjct: 191 NMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGK 250

Query: 76  -----------------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
                            D VSWSA+I GY + G+  +A+ +F +M  +G+  DE+ +V+V
Sbjct: 251 MGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSV 310

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA-------------------- 158
           LSAC  L  ++ GK +   + +  +   V L NALI M++                    
Sbjct: 311 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQ 370

Query: 159 -----------KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                      KCG V+KA  LF  M  + IVSW++VI+G A H    E +ALF EM   
Sbjct: 371 ISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLG 430

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            + PD+   V ++SAC+H   +D+G+     ++ + G+   +     ++DM  + G V+ 
Sbjct: 431 QIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVILGTTLLDMYMKCGCVEN 489

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A E    M  E     W  LI      G
Sbjct: 490 ALEVFNGME-EKGVSSWNALIIGLAVNG 516



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P++     V+ AC  +  L+ GK VH  + K     ++ +  TL+ MY  C G +E  
Sbjct: 432 IRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKC-GCVENA 490

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF+ M E+   SW+A+I G A  GL   ++D+F +M+ +GV P+EIT + VL AC  +
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 550

Query: 126 GALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTS 183
           G ++ G+    S IEK  +  +V     ++D+  + G +++A KL  SM     + +W +
Sbjct: 551 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 610

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           ++     HG       +  +++E  + PD   F  LLS
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 646



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G++   ++FD +   +   W+ M+  Y +   +  A+ L++ M  + V PD  T   V+ 
Sbjct: 90  GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 149

Query: 121 ACTDLGALEV-GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC  +  LE  GK +   + K   +  V + N LI+M+A CG++  A KLF        V
Sbjct: 150 ACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV 208

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           SW S++AG    G   EA  +F++M +  +   +   V L
Sbjct: 209 SWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLL 248


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 293/441 (66%), Gaps = 2/441 (0%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           +L+     D    NTL+  Y    G +   R +FDEM  R++VSWSAM+ GY + G   +
Sbjct: 134 LLRTAAAVDASTFNTLITAYARA-GRLADARALFDEMPARNAVSWSAMVNGYVQAGDGRE 192

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ +F +MQ   V PD+  +V VL+AC   GALE GKWV  +++   +  ++    AL+D
Sbjct: 193 ALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVD 252

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M++KCG+V  A+ +F  M  + +++WT++I GLAMHGRG EAV LF +M  +G+ PDD+A
Sbjct: 253 MYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIA 312

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+G+L AC+H GLVDKGRE FDSM   +GI PKIEHYGCMVD+L R+G + EA E IQKM
Sbjct: 313 FIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKM 372

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P+E + +IW  L++ C     ++ AE + K  I  EP     YVLLS+IYA   R     
Sbjct: 373 PMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAR 432

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYV 394
           +IR +M ++G+ K PG + +E++  I++F+ GD SH + K+I     E+  +++ + GY+
Sbjct: 433 EIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYI 492

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P   EVLLDI EE+KE AL++HSEKLAIAFAL+      PIRI KNLRVC+DCH  TK I
Sbjct: 493 PDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLI 552

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK+Y REIVVRDR RFH FK+
Sbjct: 553 SKVYGREIVVRDRTRFHLFKE 573



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+      VL ACA  G L  GK VHG +       ++     LV MY  C G ++L 
Sbjct: 205 VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKC-GEVQLA 263

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF+ M  ++ ++W+ MI G A  G  ++A+ LF QM+ SG+ PD+I  + VL ACT  
Sbjct: 264 MDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA 323

Query: 126 GALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTS 183
           G ++ G+   +S + K  +   +     ++D+ A+ G + +A ++ + M      + W +
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGA 383

Query: 184 VIAGLAMH 191
           ++AG   H
Sbjct: 384 LMAGCRFH 391


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/476 (43%), Positives = 316/476 (66%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ P+ FTYPFVLKAC+ +G L  G  +H  V K     D+ VQN L++MYG C G
Sbjct: 121 MLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKC-G 179

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
            IE    VF++M E+   SWS++IG +A + +  + + L   M   G    +E  +V+ L
Sbjct: 180 AIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL 239

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT LG+   G+ +   + + +   +V +  +LIDM+ K G ++K L +F++M  +   
Sbjct: 240 SACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRY 299

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+T +I GLA+HGRG EA+++F +MLE G+ PDDV +VG+LSACSH GLV++G + F+ +
Sbjct: 300 SYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRL 359

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +  I P I+HYGCMVD++ R+G +K A++ I+ MPI+ N ++WR+L+SAC     L++
Sbjct: 360 QFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 419

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + +      +  +Y++L+++YA+  +W    +IR  M ++ + + PG +L+E + 
Sbjct: 420 GEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANR 479

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +Y+FV  DKS  Q + IY+M+ +M  ++K  GY P  S+VLLD++E++K   L  HS+K
Sbjct: 480 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 539

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAFAL++T  G+ IRI +N+R+CNDCH+ TKFIS IY REI VRDR+RFHHFKD
Sbjct: 540 LAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKD 595



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +LK C  + +    K VH  +LK   F D     N +     S  G +E    +F ++ E
Sbjct: 36  LLKRCKSMEEF---KQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
             S  ++ MI G        +A+ L+ +M   G+ PD  T   VL AC+ LGAL+ G  +
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQI 152

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            + + K  +   V + N LI+M+ KCG ++ A  +F  M+ +++ SW+S+I   A     
Sbjct: 153 HAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMW 212

Query: 195 LEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
            E + L  +M   G    ++   V  LSAC+H G  + GR     +  +   +  +    
Sbjct: 213 HECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISEL-NVAVKT 271

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            ++DM  +SG +++     Q M  + N   +  +I+     G  + A S+
Sbjct: 272 SLIDMYVKSGSLEKGLCVFQNMA-QKNRYSYTVIITGLAIHGRGREALSV 320


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/493 (43%), Positives = 316/493 (64%), Gaps = 19/493 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + P+ +    VLKAC     L  G+ VH  VLK     +  ++  L+ +YG C G
Sbjct: 121 MINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKC-G 179

Query: 61  GIELGRKVFDEMSERD------------------SVSWSAMIGGYARLGLSTDAIDLFRQ 102
             E  R+VFDEM ERD                  +V W+AMI G  R G S  A+++FR 
Sbjct: 180 AFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRN 239

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           MQ   V P+E+T+V VLSAC++LGAL++G+WV S+++K  +  +  +  ALI+M+++CGD
Sbjct: 240 MQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGD 299

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +D+A ++F  M  + ++++ S+I G A+HG+ +EAV LF  +++ G  P  V FVG+L+A
Sbjct: 300 IDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNA 359

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH GL + G E F SM  D+GI P+IEHYGCMVD+L R GR++EA+ FI+ M +  + +
Sbjct: 360 CSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHV 419

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           +   L+SAC   G L+LAE + K L+  +      Y+LLS+ Y+   +W++  ++R  M 
Sbjct: 420 MLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMR 479

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
           + G++K PG + IE++NEI+EF+ GD  H Q ++IY+ L+E+ + ++  GY P T  VL 
Sbjct: 480 EEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLH 539

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI + +KE AL  HSE+LAI + L+ T P T +R+VKNLRVCNDCH   K IS I  R+I
Sbjct: 540 DIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKI 599

Query: 463 VVRDRHRFHHFKD 475
           VVRDR+RFHHF++
Sbjct: 600 VVRDRNRFHHFEN 612



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 34/274 (12%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             I    K+F      +   ++A+I G       TD I L+ QM  S + PD   + +VL
Sbjct: 78  NSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVL 137

Query: 120 SACTDLGALEVGKWVESFIEKQMV--NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC    AL+ G+ V S + K  +  NRS+ +   LI+++ KCG  + A ++F  M  R 
Sbjct: 138 KACGCHLALKEGREVHSQVLKLGLSSNRSIRI--KLIELYGKCGAFEDARRVFDEMPERD 195

Query: 178 IVS------------------WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           +V+                  WT++I GL  +G    A+ +F  M    V P++V  V +
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255

Query: 220 LSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHY--GCMVDMLCRSGRVKEAHEFIQK 274
           LSACS  G +  G   R Y D  + +      + H+  G +++M  R G + EA    ++
Sbjct: 256 LSACSELGALQLGRWVRSYMDKHRIE------LNHFVGGALINMYSRCGDIDEAQRVFEQ 309

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           M  E N I + ++I      G+   A  + + LI
Sbjct: 310 MK-EKNVITYNSMIMGFALHGKSVEAVELFRGLI 342



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 53/200 (26%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+ + +    +  A K+F       +  +T++I GL +     + + L+ +M+ + + PD
Sbjct: 70  LLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPD 129

Query: 213 DVAFVGLLSAC-----------------------------------SHCGLVDKGREYFD 237
             A   +L AC                                     CG  +  R  FD
Sbjct: 130 SYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD 189

Query: 238 SMKN--------------DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE---AN 280
            M                D GI   +  +  M+D L R+G    A E  + M  E    N
Sbjct: 190 EMPERDVVASTVMINYYFDHGIKDTV-CWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248

Query: 281 PIIWRTLISACCARGELKLA 300
            +    ++SAC   G L+L 
Sbjct: 249 EVTIVCVLSACSELGALQLG 268


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/484 (46%), Positives = 303/484 (62%), Gaps = 22/484 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F  P VLKAC  +    LGK +HG VLK     D+ V N L+ MYG C   +E  R V
Sbjct: 158 DNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC-ACVEYARLV 216

Query: 69  FDEMSERDSVSW----SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           FD+M ERD VSW    +A++  YA+ G    A  LF  +    V    ++   +++ C  
Sbjct: 217 FDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTV----VSWTAMIAGCIR 272

Query: 125 LGALEVGKWVE-------------SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
              LE G  +              + + K+ V     L  AL+DM+AKCGD++ A +LF 
Sbjct: 273 SNRLEEGTKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFI 332

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
               R I  W ++I G AMHG G EA+ +F EM   GV P+D+ F+GLL ACSH GLV +
Sbjct: 333 EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTE 392

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G++ F+ M + FG++P+IEHYGCMVD+L R+G + EAHE I+ MPI+ N I+W  L++AC
Sbjct: 393 GKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAAC 452

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
                 +L E    +L+  EP +    VL+S+IYA   RW     +R+ M   GMKK PG
Sbjct: 453 RLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPG 512

Query: 352 STLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKED 411
            ++IE++  ++EF+ GD+SH Q + I EML EM RK+ +AGYVP TS VLL+I+EE+KE 
Sbjct: 513 HSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKET 572

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           AL  HSEKLA+AF L+ T P TPIRIVKNLRVCNDCH+ATK +SKIY R I+VRDR+RFH
Sbjct: 573 ALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFH 632

Query: 472 HFKD 475
           HF++
Sbjct: 633 HFRE 636


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+ P++ TY  ++ ACA   +LN  + +H  V    FG D+ V   LVHMY  C G
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKC-G 409

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R+VFD M  RD VSWSAMIG Y   G  T+A + F  M+ S + PD +T + +L+
Sbjct: 410 AIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLN 469

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGAL+VG  + +   K  +   V L NALI M AK G V++A  +F +M  R +++
Sbjct: 470 ACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVIT 529

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G ++HG   EA+ LF+ ML+    P+ V FVG+LSACS  G VD+GR +F  + 
Sbjct: 530 WNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLL 589

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              GI+P ++ YGCMVD+L R+G + EA   I+ MP++    IW +L+ AC   G L +A
Sbjct: 590 EGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVA 649

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +R +  +P   + YV LSH+YA    WE   K+R+VM+ RG++K  G T IE+  +
Sbjct: 650 ERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGK 709

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D+SH    EIY  L  +   +K+ GY+P T  VL D+ E+ KE+A++ HSEKL
Sbjct: 710 VHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKL 769

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ +L  P GTPIRI KNLRVC+DCHSA+KFISK+  REI+ RD  RFHHFKD
Sbjct: 770 AIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKD 824



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 5/309 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ PNK ++  +L  C     L  GK+VH   +     DDI V  +L+ MY +C G
Sbjct: 250 MQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTC-G 308

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R+VFD M  RD VSW+ MI GYA  G   DA  LF  MQ  G+ PD IT + +++
Sbjct: 309 SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMN 368

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC     L   + + S ++       + +  AL+ M+AKCG +  A ++F +M  R +VS
Sbjct: 369 ACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVS 428

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W+++I     +G G EA   F  M  + + PD V ++ LL+AC H G +D G E Y  ++
Sbjct: 429 WSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI 488

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K D  ++  +     ++ M  + G V+ A      M +  + I W  +I      G  + 
Sbjct: 489 KAD--LVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNARE 545

Query: 300 AESITKRLI 308
           A  +  R++
Sbjct: 546 ALYLFDRML 554



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G+ P+  T+  VL AC+    LN GK VH  V+   F  D  +   LV MY    G
Sbjct: 149 MVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVK-GG 207

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD +  RD  +++ M+GGYA+ G    A +LF +MQ  G+ P++I+ +++L 
Sbjct: 208 SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILD 267

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C    AL  GK V +      +   + +  +LI M+  CG ++ A ++F +M  R +VS
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVS 327

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +I G A +G   +A  LF  M E G+ PD + ++ +++AC+    ++  RE   S  
Sbjct: 328 WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHARE-IHSQV 386

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +  G    +     +V M  + G +K+A +    MP   + + W  +I A    G
Sbjct: 387 DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGAYVENG 440



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 169/375 (45%), Gaps = 51/375 (13%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  + + C  + D  LGK V   +++     +I+  NTL+ +Y  C G +   R++FD 
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSIC-GNVTEARQIFDS 117

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +  +  V+W+A+I GYA++G   +A  LFRQM   G+ P  IT ++VL AC+    L  G
Sbjct: 118 VENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWG 177

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K V + +          +  AL+ M+ K G +D A ++F  ++ R + ++  ++ G A  
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC---------------------------- 223
           G   +A  LF  M + G+ P+ ++F+ +L  C                            
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA 297

Query: 224 -------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
                  + CG ++  R  FD+MK     +  +  +  M++    +G +++A      M 
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMK-----VRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 277 ---IEANPIIWRTLISACCARGELKLAESITKRL----IGNEPMHESNYVLLSHIYAKLL 329
              I+ + I +  +++AC     L  A  I  ++     G + +  +  V   H+YAK  
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALV---HMYAKCG 409

Query: 330 RWEKKTKIREVMDKR 344
             +   ++ + M +R
Sbjct: 410 AIKDARQVFDAMPRR 424



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A D+ +++   G   D  T V +   CT+L    +GK V   I +     ++   N LI 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           +++ CG+V +A ++F S+  +T+V+W ++IAG A  G   EA ALF +M++ G+ P  + 
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+ +L ACS    ++ G+E    +    G +        +V M  + G + +A +    +
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTA-GFVSDFRIGTALVSMYVKGGSMDDARQVFDGL 219

Query: 276 PI 277
            I
Sbjct: 220 HI 221


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 314/519 (60%), Gaps = 47/519 (9%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE 59
           E  V PN+FT+P VLKACA +  L  GK VHG +LKF   DD  V   L+ MY   GS E
Sbjct: 110 EATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSME 169

Query: 60  -------------------------------------------GGIELGRKVFDEMSERD 76
                                                      G ++  R++FD M++R 
Sbjct: 170 DANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRS 229

Query: 77  SVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            VSW+ MI GYA+ G   +AI++F R MQ+  V P+ +T+V+VL A + LG LE+GKWV 
Sbjct: 230 VVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVH 289

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            + EK  +     L +AL+DM+AKCG ++KA+++F  +    +++W +VI GLAMHG+  
Sbjct: 290 LYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKAN 349

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +       M + G+ P DV ++ +LSACSH GLVD+GR +F+ M N  G+ PKIEHYGCM
Sbjct: 350 DIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCM 409

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R+G ++EA E I  MP++ + +IW+ L+ A      +K+     + L+   P   
Sbjct: 410 VDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDS 469

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
             YV LS++YA    W+    +R +M    ++K PG + IE+D  I+EF+  D SH ++K
Sbjct: 470 GAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAK 529

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           +I+ ML+E+  K+   G++P T++VLL ++E+ KE  L+ HSEK+A+AF L+ TPP TP+
Sbjct: 530 DIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPL 589

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            IVKNLR+C DCHS+ K ISK+Y R+IV+RDR RFHHF+
Sbjct: 590 CIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFE 628



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 154/347 (44%), Gaps = 63/347 (18%)

Query: 7   SPNKFTY-PFV----LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-G 60
            PN  +Y P +    +KAC  + +L   K VH  ++K     D  +   ++ +  + +  
Sbjct: 7   QPNTASYYPRLDVPQIKACKSMREL---KQVHAFLVKTGQTHDNAIATEILRLSATSDFR 63

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQM-QISGVCPDEITMVTV 118
            I     VFD++ ER+  +W+ +I   A       DA+ +F QM   + V P++ T  +V
Sbjct: 64  DIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSV 123

Query: 119 LSACTDLGALEVGKWV-----------ESFIEKQMVNR---------------------- 145
           L AC  +  L  GK V           + F+   ++                        
Sbjct: 124 LKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVD 183

Query: 146 --------------SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
                         +V LCN ++D +A+ G++  A +LF  M  R++VSW  +I+G A +
Sbjct: 184 DVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQN 243

Query: 192 GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKNDFGIIPKI 249
           G   EA+ +F  M++ G V P+ V  V +L A S  G+++ G+  +  + KN   I   +
Sbjct: 244 GFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVL 303

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                +VDM  + G +++A +  +++P + N I W  +I      G+
Sbjct: 304 G--SALVDMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGGLAMHGK 347


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/509 (42%), Positives = 321/509 (63%), Gaps = 37/509 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  + V P+  T+PF+L++   I   + G+ +H  +L     +D  VQ +L++MY SC  
Sbjct: 54  MRLHAVLPDLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGT 110

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I + RK+FD+M E++ +SWS MI GY   
Sbjct: 111 PTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSC 170

Query: 91  GLSTDAIDLFRQMQI---SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           G    A+ LFR +Q    S + P+E TM +VLSAC  LGAL+ GKWV ++I+K  +   V
Sbjct: 171 GEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDV 230

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
            L  +LIDM+AKCG +++A  +F ++   + +++W+++I   +MHG   E + LF  M+ 
Sbjct: 231 VLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVN 290

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV P+ V FV +L AC H GLV +G EYF  M N++G+ P I+HYGCMVD+  R+GR++
Sbjct: 291 DGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIE 350

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           +A   ++ MP+E + +IW  L++     G+++  E    +L+  +P + S YVLLS++YA
Sbjct: 351 DAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYA 410

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
           KL RW +   +R++M+ RG+KK+PG +L+E+D  I EF  GD SH +   +Y MLDE+ +
Sbjct: 411 KLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMK 470

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           +++K GY   T EVLLD++EE KE AL+ HSEKLAIA+  L+T PGT IRIVKNLR+C+D
Sbjct: 471 RLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSD 530

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH A K ISK +NREI+VRD +RFHHFK+
Sbjct: 531 CHVAIKIISKEFNREIIVRDCNRFHHFKN 559


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/468 (46%), Positives = 309/468 (66%), Gaps = 6/468 (1%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +PN FT  FVLKAC  +G+   G+ +H            +VQ  L+++Y  CE  + L R
Sbjct: 127 APNSFTLAFVLKACTALGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEE-VALAR 182

Query: 67  KVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            VFD M E ++ V+WS+MIGGY+R+G+  +A+ LFR MQ  GV PDE+TMV+V+SAC   
Sbjct: 183 NVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKA 242

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL++GKWV +FI+++ +   + L  ALIDM+AKCG +++A  +F SM  R   +W+++I
Sbjct: 243 GALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMI 302

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            GLAMHG   +A+ LF  ML+  V P++V FVG+LSAC+H GLVD GR Y+ +M+ + GI
Sbjct: 303 VGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQ-ELGI 361

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +E+YGCMVD+LCRSG + EA  F+  MPI  N +IWR L+ A  +   + + E  ++
Sbjct: 362 EASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASR 421

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           RL   EP +  NYVLLS++YA   +W++   +R+ M    +  + G + IE++  +++FV
Sbjct: 422 RLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFV 481

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D SH + K+I  +L E+  ++  AG+ P T+ VL D+ EE+KE AL +HSE+LAIA+ 
Sbjct: 482 VSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYG 541

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LLKT     IR+VKNLR C DCH  TK ISK Y REI+VRDR RFH F
Sbjct: 542 LLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRVRFHRF 589



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 1/173 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+P++ T   V+ ACA  G L+LGK VH  + +     D+ +   L+ MY  C G
Sbjct: 220 MQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKC-G 278

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  + VFD M ERD+ +WSAMI G A  GL+ DA+ LF +M    V P+ +T V VLS
Sbjct: 279 LIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLS 338

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC   G ++ G+     +++  +  S+     ++D+  + G +D+A      M
Sbjct: 339 ACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGM 391


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 306/505 (60%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M   GV PNK T+  +LKAC+  G L  G+ +H  + K  F  D  +Q  + +MY  C  
Sbjct: 377 MRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGS 436

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +    KVF EMS R+ VSW+ MI GYA+ 
Sbjct: 437 IYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQS 496

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G      +L   M++ G  PD +T++++L AC  L ALE GK V +   K  +     + 
Sbjct: 497 GDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVA 556

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            +LI M++KCG+V +A  +F  ++ R  V+W +++AG   HG G EAV LF+ ML+  VP
Sbjct: 557 TSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVP 616

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+++ F  ++SAC   GLV +GRE F  M+ DF + P  +HYGCMVD+L R+GR++EA E
Sbjct: 617 PNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEE 676

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
           FIQ+MP E +  +W  L+ AC +   ++LAE     ++  EP + S YV LS+IYA+  R
Sbjct: 677 FIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGR 736

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+  TK+R+VMD +G+KK  G + IE+D  I+ FV  D +H +   I+  L+ + ++MK+
Sbjct: 737 WDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKE 796

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY P    VL D++E  KE AL  HSEKLAIA+ LLKTPPGTPIRI+KNLRVC DCH+A
Sbjct: 797 AGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTA 856

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISKI  REIV RD +RFH+FK+
Sbjct: 857 TKFISKIRKREIVARDANRFHYFKN 881



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 159/293 (54%), Gaps = 3/293 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G+  N  TY  +++ CA +     GK VH  + +     DI++ N+L++ Y S  G +
Sbjct: 71  QRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFY-SKFGDV 129

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               +VF  M+ RD V+WS+MI  YA       A D F +M+ + + P+ IT +++L AC
Sbjct: 130 ASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKAC 189

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +   LE  + + + ++   +   V +  ALI M++KCG++  A ++F+ M  R +VSWT
Sbjct: 190 NNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWT 249

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I   A H +  EA  L+E+ML+AG+ P+ V FV LL++C+    +++GR    S  ++
Sbjct: 250 AIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISE 308

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            G+   +     ++ M C+   +++A E   +M  + + I W  +I+     G
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAMIAGYAQSG 360



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 8/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+  +LKAC     L   + +H  V       D+ V   L+ MY  C G
Sbjct: 170 MKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC-G 228

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L  ++F +M ER+ VSW+A+I   A+     +A +L+ +M  +G+ P+ +T V++L+
Sbjct: 229 EISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLN 288

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    AL  G+ + S I ++ +   V + NALI M+ KC  +  A + F  M+ R ++S
Sbjct: 289 SCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVIS 348

Query: 181 WTSVIAGLAMHG----RGLEAV-ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           W+++IAG A  G      L+ V  L E M   GV P+ V F+ +L ACS  G +++GR+ 
Sbjct: 349 WSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQI 408

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              + +  G          + +M  + G + EA +   KM    N + W +L++     G
Sbjct: 409 HAEI-SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCG 466

Query: 296 ELKLAESI 303
           +L  AE +
Sbjct: 467 DLTSAEKV 474



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 41/345 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G+SPN  T+  +L +C     LN G+ +H  + +     D+ V N L+ MY  C  
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC-N 329

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-----DAIDLFRQMQISGVCPDEITM 115
            I+  R+ FD MS+RD +SWSAMI GYA+ G        +   L  +M+  GV P+++T 
Sbjct: 330 CIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTF 389

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA----------------- 158
           +++L AC+  GALE G+ + + I K        L  A+ +M+A                 
Sbjct: 390 MSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMEN 449

Query: 159 --------------KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
                         KCGD+  A K+F  M+ R +VSW  +IAG A  G   +   L   M
Sbjct: 450 KNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM 509

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
              G  PD V  + +L AC     +++G+  + +++K   G+         ++ M  + G
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERGKLVHAEAVK--LGLESDTVVATSLIGMYSKCG 567

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            V EA     K+    + + W  +++     G    A  + KR++
Sbjct: 568 EVTEARTVFDKIS-NRDTVAWNAMLAGYGQHGIGPEAVDLFKRML 611



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   +AI L   ++  G+  +  T   ++  C  L   E GK V   +++  +   + 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N+LI+ ++K GDV    ++FR M  R +V+W+S+IA  A +    +A   FE M +A 
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + P+ + F+ +L AC++  +++K RE    +K   G+   +     ++ M  + G +  A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLA 233

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            E  QKM  E N + W  +I A     +L  A  + ++++
Sbjct: 234 CEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKML 272


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/468 (44%), Positives = 308/468 (65%), Gaps = 4/468 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTYPFVLKAC+  G    GK +HG V K   G D ++ N L+H+Y S  G   L  K
Sbjct: 99  PDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLY-SVSGEPNLAYK 157

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD+M +RD VSW+++I G+       +AI LF  M  +G+ P+E+T+ +VL AC D GA
Sbjct: 158 VFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGA 217

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L  G+ + SF++++  + +  +  ALIDM+AKCG +D AL++F     + +  WT++IAG
Sbjct: 218 LNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAG 277

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LA HG  ++A+  FE M ++ V  D+ A   +LSA  + GLV +G  +F  +K    I P
Sbjct: 278 LASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKK-HKIKP 336

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+HYGC+VDML R+GR+K+A EFI+KMPIE + ++WRTLI  C   G+++ +E + + L
Sbjct: 337 TIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVREL 396

Query: 308 --IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
             +  +     +YVLL ++YA   +WE+K K RE+M +RG+ K P  + IE+D  ++EF 
Sbjct: 397 ELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFT 456

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD  H ++  +YE L+++  +++  GY P  SEVLL+I++++K   L  HSEKLA++F 
Sbjct: 457 AGDSRHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFG 516

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           L+K+ PG+ IRIVKNLR C DCHS  K ISK+Y R+I+VRDR RFHHF
Sbjct: 517 LVKSSPGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHF 564



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 2/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ PN+ T   VL+ACA  G LN G+ +H  V +  F  + +V   L+ MY  C G
Sbjct: 193 MIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKC-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   +VFDE  E+D   W+A+I G A  GL   AI+ F  M+ S V  DE  +  VLS
Sbjct: 252 CIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLS 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IV 179
           A  + G +  G      ++K  +  ++     ++DM  + G +  A +  R M      V
Sbjct: 312 AYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAV 371

Query: 180 SWTSVIAGLAMHG 192
            W ++I G  + G
Sbjct: 372 LWRTLIWGCKILG 384


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/489 (45%), Positives = 312/489 (63%), Gaps = 25/489 (5%)

Query: 1   MLEYGVS-PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G S P+K T+PFVLKACA I  L+ GK VH  ++K  F  D++V N L+H YGSC 
Sbjct: 122 MLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSC- 180

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L RKVFDEM ER  VSW++MI    R+G    A+ LFR MQ S   PD  TM +VL
Sbjct: 181 GCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVL 239

Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  LG+L +G W   F+ +     V   V + N+LI+M+ KCG +  A ++F+ M   
Sbjct: 240 SACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKH 299

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGRE 234
            + SW ++I G A HG+  EA+  F+ M++ G  V P+ V FV LL AC+H G+V+KGR+
Sbjct: 300 DLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQ 359

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  ++GI P +EHYGC++D+L R+G + EA + +  MP++ + +IWR+L+ ACC +
Sbjct: 360 YFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 419

Query: 295 G-ELKLAESITKRLIGN-EPMHESN------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           G  ++L+E I + +IG  E    SN      YVLLS +YA   RW     +R++M   G+
Sbjct: 420 GASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGI 479

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
           +K PG + IE++    EF  GD SH Q+K+IY+ L  +  +++          ++   N+
Sbjct: 480 RKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLR---------SIVDATND 530

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
             KE +L  HSE+LAIAF L+  PP TPIRI KNLRVC+DCH  TK ISK++N EI+VRD
Sbjct: 531 SSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRD 590

Query: 467 RHRFHHFKD 475
           R RFHHFKD
Sbjct: 591 RVRFHHFKD 599



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 50/227 (22%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVN---RSVGLCNALIDMFAKCGDVDKALKLFR 171
           ++++   C+D+  L   K + +F  +        ++ L   ++ + +   DV+ A ++F 
Sbjct: 32  ILSLAETCSDMSQL---KQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFD 88

Query: 172 SMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH---- 225
           S+   +   W ++I   A    R  EA  L+ +MLE G   PD   F  +L AC++    
Sbjct: 89  SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGL 148

Query: 226 -------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
                                          CG +D  R+ FD M         +  +  
Sbjct: 149 SEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPER-----SLVSWNS 203

Query: 255 MVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKL 299
           M+D L R G    A +  + M    E +    ++++SAC   G L L
Sbjct: 204 MIDALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSL 250


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/505 (43%), Positives = 318/505 (62%), Gaps = 32/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  ++      L ACA +  +N+GK +H   LK      I++QN L++MY  C G
Sbjct: 367 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC-G 425

Query: 61  GIELGRKVFDE-------------------------------MSERDSVSWSAMIGGYAR 89
            I + RK+FDE                               M E+D VSWS+MI GYA+
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
             L  + + LF++MQ+SG  PDE T+V+V+SAC  L ALE GKWV ++I++  +  +V L
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 545

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              LIDM+ KCG V+ AL++F  M  + I +W ++I GLAM+G    ++ +F  M +  V
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 605

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+++ F+G+L AC H GLVD+G+ +F SM +D  I P ++HYGCMVD+L R+G+++EA 
Sbjct: 606 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 665

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E + +MP+  +   W  L+ AC   G+ ++   + ++LI  +P H+  +VLLS+IYA   
Sbjct: 666 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKG 725

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +W+   +IR +M K  + KIPG ++IE +  I+EF+ GDK+H     I +ML EM  K+K
Sbjct: 726 KWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 785

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P  +EVLLD++EE+KE  L +HSEKLAIAF L+   P TPIRI+KNLR+CNDCH+
Sbjct: 786 LEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHT 845

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
           A K ISK + R+IVVRDRHRFHHF+
Sbjct: 846 AAKLISKAFCRKIVVRDRHRFHHFE 870



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 163/387 (42%), Gaps = 94/387 (24%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML   +  + +TYP +++AC+        K VH  VLK  F  D++V+NTL++ +  C  
Sbjct: 204 MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 263

Query: 60  ------------------------GGIELGR----------------------------- 66
                                   G IE+G                              
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323

Query: 67  -------KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                  K+FDEM E+D V+WSA+I  + +  +  +AI  F  M   GV  DE+  V+ L
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------------- 162
           SAC +L  + +GK + S   K      + L NALI M++KCGD                 
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 443

Query: 163 --------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                         VD A  +F SM  + +VSW+S+I+G A +    E +ALF+EM  +G
Sbjct: 444 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 503

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             PD+   V ++SAC+    +++G+     +K + G+   +     ++DM  + G V+ A
Sbjct: 504 FKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETA 562

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
            E    M IE     W  LI      G
Sbjct: 563 LEVFYGM-IEKGISTWNALILGLAMNG 588



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 64/256 (25%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A  L++ M  + +  D  T   ++ AC+   +    K V + + K   +  V + N LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG---------------------------- 187
            F+ C ++  A ++F   +    VSW S++AG                            
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 188 ---LAMHGRGLEAVALFEEMLEA-------------------------------GVPPDD 213
                M G  +EA  LF+EMLE                                GV  D+
Sbjct: 317 IVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDE 376

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V  V  LSAC++  +V+ G+    S+    G    I     ++ M  + G +  A +   
Sbjct: 377 VVAVSALSACANLLVVNMGK-LIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 435

Query: 274 KMPIEANPIIWRTLIS 289
           +  +  + I W ++IS
Sbjct: 436 EAYL-LDLISWNSMIS 450


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/477 (44%), Positives = 307/477 (64%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  +  FV+K+C  I  L  G  +H  +L+     D  +  TL+ +Y  C+ 
Sbjct: 159 MRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDK 218

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTV 118
             E   KVFDE+ + D+VSW+ +I        + DA+ +F  MQ +  G  PD++T + +
Sbjct: 219 -FEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLL 277

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC +LGALE G+ V ++IE+   + ++ LCN+LI M+++CG ++KA  +F+ M+ R +
Sbjct: 278 LQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNV 337

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW+++I+G AMHG G EA+  FE+M + GV PDD    G+LSACSHCGLVD G  +FD 
Sbjct: 338 VSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDR 397

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M   FGI P I HYGCMVD+L R+G + +A++ I  M I+ +  +WRTL+ AC       
Sbjct: 398 MSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHAT 457

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E +   LI  +     +YVLL +IY+ +  W+K T +R+ M ++G++  PG + IEL 
Sbjct: 458 LGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELK 517

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +++EFV  D  H ++ EIYEMLDE+G+++K AGYV   S  L ++  E+K + L+ HSE
Sbjct: 518 GKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSE 577

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF +L TPPGT IR+ KNLR+C DCH+  K +S  YNRE+V+RDR RFHHF++
Sbjct: 578 KLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFRE 634



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 110/231 (47%), Gaps = 4/231 (1%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +VF ++ +     ++ MI  Y+          L+R+M+  GV P+ ++   V+ +C  + 
Sbjct: 123 QVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRIS 182

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           +L  G  + + I +        L   L+D+++ C   ++A K+F  +     VSW  +I+
Sbjct: 183 SLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLIS 242

Query: 187 GLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
               + R  +A+ +F+ M     G  PDDV  + LL AC++ G ++ G    + ++ + G
Sbjct: 243 CCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIE-EHG 301

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               +     ++ M  R GR+++A+   ++M  E N + W  +IS     G
Sbjct: 302 YDGALNLCNSLITMYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISGFAMHG 351


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 307/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+K T   +L AC+ + +L +G+ +H  V KF    D  V   LV MYG C  
Sbjct: 223 MLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD+M ERD V+W+ MIGGYA  G + +++ LF +M+  GV PD++ MVTV+ 
Sbjct: 283 -IEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 341

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   + ++ +I+++     V L  A+IDM AKCG V+ A ++F  M  + ++S
Sbjct: 342 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 401

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IA    HG+G +A+ LF  ML +G+ P+ +  V LL ACSH GLV++G  +F  M 
Sbjct: 402 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 461

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ +   ++HY C+VD+L R+GR+ EA + I+ M +E +  +W   + AC    ++ LA
Sbjct: 462 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLA 521

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     L+  +P +  +Y+LLS+IYA   RWE   K R++M +R +KKIPG T IE+DN+
Sbjct: 522 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 581

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++F  GD +H +SKEIYEML  +G K++  GYVP T+ VL D++EE K   L  HSEKL
Sbjct: 582 SHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKL 641

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TP  TPIRI+KNLRVC DCH+  K +S I  R I+VRD +RFHHFK+
Sbjct: 642 AIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKE 696



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 169/290 (58%), Gaps = 7/290 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++  G  P+ +T PFV++AC  + +L +G+ +H  V KF    D  V   LV MY  C  
Sbjct: 21  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD+M ERD V+W+ MIGGYA  G + +++ LF +M+  GV PD++ MVTV+ 
Sbjct: 81  -IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 139

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   + ++ +I+++     V L  A+IDM+AKCG V+ A ++F  M  + ++S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IA    HG+G +A+ LF  ML +G+ PD +    LL ACS    +  GR     + 
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGR-LIHHIV 258

Query: 241 NDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             FG+   ++H+ C  +VDM  +   +++A     KMP E + + W  +I
Sbjct: 259 YKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMI 305



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 165/299 (55%), Gaps = 9/299 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+K     V+ ACA +G ++  + +   + + +F  D+ +   ++ MY  C G
Sbjct: 122 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R++FD M E++ +SWSAMI  Y   G    A+DLFR M  SG+ PD+IT+ ++L 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+DL  L++G+ +   + K  ++    +C AL+DM+ KC +++ A  LF  M  R +V+
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFD 237
           WT +I G A  G   E++ LF++M E GV PD VA V ++ AC+  G + K R   +Y  
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             K    +I        M+DM  + G V+ A E   +M  E N I W  +I+A    G+
Sbjct: 361 RKKFQLDVILGT----AMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 414



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           M+GG+A++G   +    FR++   G  PD  T+  V+ AC DL  L++G+ +   + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++    +C AL+DM+ KC +++ A  LF  M  R +V+WT +I G A  G+  E++ LFE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDML 259
           +M E GV PD VA V ++ AC+  G + K R   +Y    K    +I        M+DM 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT----AMIDMY 176

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            + G V+ A E   +M  E N I W  +I+A    G+ + A  +  R++ +  M      
Sbjct: 177 AKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLF-RMMLSSGMLPDKIT 234

Query: 320 LLSHIYA 326
           L S +YA
Sbjct: 235 LASLLYA 241


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/514 (42%), Positives = 321/514 (62%), Gaps = 41/514 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG-KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M++  V P+ +TYP V++ACA +  L  G K +H  VLK  F  D++VQNTL++MY  C 
Sbjct: 120 MVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVC- 177

Query: 60  GGIELGRKVFD----------------------------------EMSERDSVSWSAMIG 85
           G +   RK+FD                                  EM E+D VSWSA+I 
Sbjct: 178 GNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALIS 237

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GY + G+  +A+ +F +M  +G+  DE+ +V+VLSAC  L  ++ GK +   + +  +  
Sbjct: 238 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 297

Query: 146 SVGLCNALI----DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
            V L NALI    DM+ KCG V+ AL++F  M  + + SW ++I GLA++G    ++ +F
Sbjct: 298 YVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMF 357

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            EM   GV P+++ F+G+L AC H GLVD+GR +F SM    GI P ++HYGCMVD+L R
Sbjct: 358 SEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGR 417

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           +G + EA + I+ MP+  +   W  L+ AC   G+ ++ E + ++LI  +P H+  +VLL
Sbjct: 418 AGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLL 477

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S+I+A    WE   ++R +M ++G+ K PG +LIE +  ++EF+ GDK+H    ++  ML
Sbjct: 478 SNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGML 537

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
           +EM +++K  GY P T+EV LDI+EE+KE  L +HSEKLAIAF LL   P TPIRI+KNL
Sbjct: 538 NEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNL 597

Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           R+CNDCH+A K ISK Y REIVVRDRHRFH+FK+
Sbjct: 598 RICNDCHTAAKLISKAYAREIVVRDRHRFHYFKE 631



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 42/274 (15%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G++   ++FD +   +   W+ M+  Y +   +  A+ L++ M  + V PD  T   V+ 
Sbjct: 78  GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 137

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------------- 162
           AC  +  LE G K +   + K   +  V + N LI+M+A CG+                 
Sbjct: 138 ACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV 196

Query: 163 -----------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
                            V +A KLF  M+ + +VSW+++I+G   +G   EA+ +F EM 
Sbjct: 197 SWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 256

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV----DMLCR 261
             G+  D+V  V +LSAC+H  +V  G+     +    GI   +     ++    DM  +
Sbjct: 257 ANGMRLDEVVVVSVLSACAHLSIVKTGK-MIHGLVIRMGIESYVNLQNALIHMYSDMYMK 315

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            G V+ A E    M  E     W  LI      G
Sbjct: 316 CGCVENALEVFNGME-EKGVSSWNALIIGLAVNG 348


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/447 (47%), Positives = 303/447 (67%), Gaps = 4/447 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  TYP +L+ACA +  L  G+ +H    K      + V+N+LVH+YG+C G  E   +
Sbjct: 116 PDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGAC-GLFESAHR 174

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VFDE+   ER+ VSW++M+ G+A  G   + + +FR+M      PD  T+V+VL+A  ++
Sbjct: 175 VFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEI 234

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTSV 184
           GAL +G+ V  ++ K  +  +  + NALID++AKCG V+ A ++F  M  R T+VSWTS+
Sbjct: 235 GALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSL 294

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA++G G EA+ LF  M    + P ++  VG+L ACSHCGLVD G  YF+ MK ++ 
Sbjct: 295 IVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYN 354

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEH GCMVD+L R+G+VKEA+++I  MP+E N ++WRTL+ AC    +L+L E+  
Sbjct: 355 IAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAW 414

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            RL+  +P H  +YVLLS++YA + RW     +R+ M K G++K PG +L+EL N +YEF
Sbjct: 415 ARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVELRNSVYEF 474

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GD+SH +S++IY+ML E+   +++ GY+P TS VL DI EE+KE ALN HSE+LAIAF
Sbjct: 475 VMGDRSHPESEQIYQMLAEVADSLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAF 534

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           ALLK+ PGTPIRIVKNLR+      AT
Sbjct: 535 ALLKSLPGTPIRIVKNLRLFQLIEIAT 561



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    P+ FT   VL A A IG L LG+ VH  + K    ++ HV N L+ +Y  C G
Sbjct: 212 MLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKC-G 270

Query: 61  GIELGRKVFDEMSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G+E  R+VF+EM  R +V SW+++I G A  G   +A++LF  M+   + P EITMV VL
Sbjct: 271 GVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVL 330

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
            AC+  G ++ G  +     E+  +   +     ++D+  + G V +A     +M     
Sbjct: 331 YACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPN 390

Query: 178 IVSWTSVIAGLAMH 191
            V W +++   AMH
Sbjct: 391 AVVWRTLLGACAMH 404


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/508 (40%), Positives = 318/508 (62%), Gaps = 34/508 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML      N +T+PF+LKAC+ +        +H  + KF +G DI+  N+L++ Y +  G
Sbjct: 101 MLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSY-AVTG 159

Query: 61  GIELGRKVFDEMSERDSVSWSA--------------------------------MIGGYA 88
             +    +FD + E D+VSW++                                MI GY 
Sbjct: 160 NFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYV 219

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G++ +A+ LF +MQ S V PD +++ + LSAC+ LGALE GKW+ S+  K        
Sbjct: 220 QAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSV 279

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           LC  LIDM+AKCG++++AL +F++M  +++  WT++I+G A HG G EA++ F EM   G
Sbjct: 280 LCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMG 339

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V P+ + F  +L+ACS+ GLV++G+  F++++ D+ + P IEHYGCMVD+L R+G + EA
Sbjct: 340 VKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEA 399

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           + FIQKMP++ N +IW +L+ AC     ++L E I + LI  +  H   YV +++I+A  
Sbjct: 400 NRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMG 459

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            +W+K  + R +M ++G+ K+PG + I L+   +EF+ GD+SH + +EI      + RK+
Sbjct: 460 KKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKL 519

Query: 389 KKAGYVPTTSEVLLD-INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           ++ GYVP   ++LLD +++E+KE  +++HSEKLAI + L+KT PGT IRI+KNLRVC DC
Sbjct: 520 EENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDC 579

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           H     ISKIY R+IV+RDR RFHHFKD
Sbjct: 580 HKVMNLISKIYKRDIVMRDRTRFHHFKD 607



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 40/273 (14%)

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+     D+  W+ MI G +       ++ L+ +M       +  T   +L AC++L A 
Sbjct: 67  FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV---- 184
           +    + + I K      +   N+LI+ +A  G+   A  LF  +     VSW SV    
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY 186

Query: 185 ----------------------------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
                                       I+G    G   EA+ LF EM  + VPPD+V+ 
Sbjct: 187 VKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSL 246

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQK 274
              LSACS  G +++G+ +  S  N      +I+   C  ++DM  + G ++EA    + 
Sbjct: 247 ASALSACSQLGALEQGK-WIHSYANK--TRTRIDSVLCCVLIDMYAKCGEMEEALGVFKN 303

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRL 307
           M  ++   +W  LIS     G  +  E+I+K L
Sbjct: 304 MKTKSVQ-VWTALISGYAYHGLGR--EAISKFL 333


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/505 (42%), Positives = 315/505 (62%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M  Y V P++     VL AC   G+L+ GK +H  +++     D H+Q+ LV MY SC  
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G IE  R VF++M ++D V WSAMI GYA  
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++LF +MQ  G+ PD++TM++V++AC  LGAL+  KW+  F++K     ++ + 
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI+M+AKCG +++A ++F  M  + ++SWT +I+  AMHG    A+  F +M +  + 
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+ + FVG+L ACSH GLV++GR+ F SM N+  I PK  HYGCMVD+  R+  ++EA E
Sbjct: 454 PNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALE 513

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ MP+  N IIW +L++AC   GE++L E   KRL+  +P H+  +V LS+IYAK  R
Sbjct: 514 LVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARR 573

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE   ++R++M  +G+ K  G +  EL+NEI+EF+  D+SH  + EIYE L E+  K+K 
Sbjct: 574 WEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKL 633

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P T  +L+D+ EE+K++ +  HSEKLA+ + L++   G+ IRI+KNLRVC DCH+ 
Sbjct: 634 VGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTF 693

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K  SK+Y REIVVRDR RFHH+KD
Sbjct: 694 IKLASKVYEREIVVRDRTRFHHYKD 718



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 165/328 (50%), Gaps = 36/328 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++ ++F++P +LKA + +  L  G  +HG   K  F  D  VQ  LV MY +C G
Sbjct: 113 MRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAAC-G 171

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD+M  RD V+WS MI GY + GL  DA+ LF +M+   V PDE+ + TVLS
Sbjct: 172 RIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLS 231

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM------- 173
           AC   G L  GK +  FI +  +     L +AL+ M+A CG +D AL LF  M       
Sbjct: 232 ACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVA 291

Query: 174 ---------------NGRTI---------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
                          N R++         V W+++I+G A      EA+ LF EM   G+
Sbjct: 292 STAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGI 351

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            PD V  + +++AC+H G +D+ +  +    KN FG    I +   +++M  + G ++ A
Sbjct: 352 KPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINN--ALIEMYAKCGSLERA 409

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGE 296
                KMP   N I W  +ISA    G+
Sbjct: 410 RRIFDKMP-RKNVISWTCMISAFAMHGD 436



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +  A +    L   K VH  +L+ +      +   LV    +    ++    VF+ + + 
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP 85

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           ++   +  +   +R       + ++ +M+  G+  D  +   +L A + + +L  G  + 
Sbjct: 86  ETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIH 145

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
               K   +    +   L+ M+A CG + +A  +F  M  R +V+W+ +I G    G   
Sbjct: 146 GLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGC 254
           +A+ LFEEM    V PD++    +LSAC   G +  G+   D  M+N+  + P ++    
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ--SA 263

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +V M    G +  A    +KM    N +    +++     G+++ A S+  +++
Sbjct: 264 LVTMYASCGSMDLALNLFEKM-TPKNLVASTAMVTGYSKLGQIENARSVFNQMV 316


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 311/467 (66%), Gaps = 3/467 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT  F LKAC+ +  L  G+ +H    +       +VQ  L+++Y  CE  + L R 
Sbjct: 129 PNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEE-VALART 187

Query: 68  VFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VFD M  +++  +WSAMIGGY+R+G+  +A+ LFR+MQ + V PDE+TMV+V+SAC   G
Sbjct: 188 VFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAG 247

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL++G+WV +FI+++ +   + L  ALIDM+AKCG +++A  +F +M  R   +W+++I 
Sbjct: 248 ALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIV 307

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLA+HG    A+ LF  MLE  V P++V F+G+LSAC+H GLV++GR Y+ +M+ + GI 
Sbjct: 308 GLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIK 366

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E+YGCMVD+ CRS  + EA+ F+  M I  N +IWRTL+ A        + +S +K+
Sbjct: 367 PSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKK 426

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NYVLLS++YA   +W++ + +R+ M +  +  + G + IE++  +++FV 
Sbjct: 427 LLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVV 486

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
            D SH + KEI  +L E+  ++ +AG+ P T+ VL D+ EE+KE AL +HSE+LAIA+ L
Sbjct: 487 SDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGL 546

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LKT     IR+VKNLR C DCH   K +SK Y+REI+VRDR RFH F
Sbjct: 547 LKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRF 593



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+P++ T   V+ ACA  G L+LG+ VH  + +     D+ +   L+ MY  C G IE  
Sbjct: 229 VNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKC-GLIERA 287

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + VFD M+ERD+ +WSAMI G A  GL   A+ LF +M    V P+ +T + VLSAC   
Sbjct: 288 KGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 347

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           G +  G+   S +++  +  S+     ++D+F +   +D+A      M
Sbjct: 348 GLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGM 395



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 127/256 (49%), Gaps = 7/256 (2%)

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMI---GGYARLGLSTDAIDLFRQMQISGV-CPDEI 113
           C       R +FD++ E  +  ++++I      A    + D + ++R+M  +G   P+  
Sbjct: 73  CGAAPSYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSF 132

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T+   L AC+ + AL  G+ + S   ++ +  S  +   L++++AKC +V  A  +F  M
Sbjct: 133 TLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGM 192

Query: 174 NG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            G + + +W+++I G +  G   EA+ LF EM  A V PD+V  V ++SAC+  G +D G
Sbjct: 193 VGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLG 252

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R +  +  +  GI   +E    ++DM  + G ++ A      M  E +   W  +I    
Sbjct: 253 R-WVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMA-ERDTKAWSAMIVGLA 310

Query: 293 ARGELKLAESITKRLI 308
             G +++A  +  R++
Sbjct: 311 IHGLVEVALKLFSRML 326


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/475 (46%), Positives = 292/475 (61%), Gaps = 2/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   G  P+  T+  +L A      L   K VH          D+ V N LVH Y  C G
Sbjct: 616  MQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKC-G 673

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             ++  ++VFD+M ER+  +W+ MIGG A+ G   DA   F QM   G+ PD  T V++LS
Sbjct: 674  NVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILS 733

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC   GALE  K V +      +   + + NAL+ M+AKCG +D A  +F  M  R + S
Sbjct: 734  ACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFS 793

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WT +I GLA HGRGLEA+  F +M   G  P+  ++V +L+ACSH GLVD+GR  F SM 
Sbjct: 794  WTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMT 853

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             D+GI P +EHY CMVD+L R+G ++EA  FI  MPIE +   W  L+ AC   G L++A
Sbjct: 854  QDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMA 913

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E   K  +  +P   S YVLLS+IYA   +WE+K  +R +M ++G++K PG + IE+DN 
Sbjct: 914  EFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNR 973

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+ FV GD SH +SKEIY  L+++  ++K  GYVP T  VL + ++E KE AL  HSEKL
Sbjct: 974  IHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKL 1033

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AI + L+ T    PIR+ KNLRVC+DCH+ATKFISKI  REIV RD  RFHHFKD
Sbjct: 1034 AIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKD 1088



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 1/217 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+ TY  +LKAC    +L  GK +H  +++  F  D+ V+  LV+MY  C G IE  + 
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC-GSIEDAQL 275

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FD+M ER+ +SW+ MIGG A  G   +A  LF QMQ  G  P+  T V++L+A    GA
Sbjct: 276 IFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGA 335

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE  K V S      +   + + NAL+ M+AK G +D A  +F  M  R I SWT +I G
Sbjct: 336 LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGG 395

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           LA HGRG EA +LF +M   G  P+   ++ +L+A +
Sbjct: 396 LAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA 432



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 151/308 (49%), Gaps = 15/308 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN +TY  +L A A  G L   K VH   +      D+ V N LVHMY    G
Sbjct: 311 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK-SG 369

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL- 119
            I+  R VFD M+ERD  SW+ MIGG A+ G   +A  LF QMQ +G  P+  T +++L 
Sbjct: 370 SIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILN 429

Query: 120 -SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            SA     ALE  K V    E+      + + NALI M+AKCG +D A  +F  M  R +
Sbjct: 430 ASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDV 489

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +SW +++ GLA +G G EA  +F +M + G+ PD   ++ LL+  +H G  D   E+ + 
Sbjct: 490 ISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--TH-GSTD-ALEWVNE 545

Query: 239 MKN---DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC---- 291
           +     + G+I         + M  R G + +A     K+ +  +   W  +I       
Sbjct: 546 VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQQR 604

Query: 292 CARGELKL 299
           C R  L L
Sbjct: 605 CGREALSL 612



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 6/296 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  TY  +L        L     VH   ++     D  V +  +HMY  C G
Sbjct: 515 MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRC-G 573

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R +FD++S R   +W+AMIGG A+     +A+ LF QMQ  G  PD  T + +LS
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           A  D  ALE  K V S   +  +V+  VG  NAL+  ++KCG+V  A ++F  M  R + 
Sbjct: 634 ANVDEEALEWVKEVHSHATDAGLVDLRVG--NALVHTYSKCGNVKYAKQVFDDMVERNVT 691

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WT +I GLA HG G +A + F +ML  G+ PD   +V +LSAC+  G ++  +E  +  
Sbjct: 692 TWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHA 751

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +  G++  +     +V M  + G + +A      M +E +   W  +I      G
Sbjct: 752 VSA-GLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHG 805



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           ++ G++ + F+Y  +L+ C    D+ L K VH  ++K     +++V N L+ +Y  C G 
Sbjct: 110 VQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRC-GR 168

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  R+VFD++ +++   W+ MIGGYA  G + DA+ ++ +M+     P+EIT +++L A
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C     L+ GK + + I +      V +  AL++M+ KCG ++ A  +F  M  R ++SW
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISW 288

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T +I GLA +GRG EA  LF +M   G  P+   +V +L+A +  G ++  +E      N
Sbjct: 289 TVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVN 348

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             G+   +     +V M  +SG + +A      M  E +   W  +I      G  + A 
Sbjct: 349 A-GLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQHGRGQEAF 406

Query: 302 SI 303
           S+
Sbjct: 407 SL 408



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 96/203 (47%), Gaps = 2/203 (0%)

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           + DA+ + +     G+  D  + V +L  C     + + K V   I K  + +++ + N 
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+ ++ +CG +  A ++F  +  + I  WT++I G A +G   +A+ ++++M +    P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           ++ ++ +L AC  C +  K  +   +     G    +     +V+M  + G +++A    
Sbjct: 219 EITYLSILKACC-CPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 273 QKMPIEANPIIWRTLISACCARG 295
            KM +E N I W  +I      G
Sbjct: 278 DKM-VERNVISWTVMIGGLAHYG 299


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 308/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V+P++ TY  +L ACA  G L  GK +H   +K     D+   N L++MY S  G
Sbjct: 338 MLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMY-SKAG 396

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD M +RD VSW+A++GGYA  G   ++   F++M   GV  ++IT + VL 
Sbjct: 397 SMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLK 456

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC++  AL+ GK + + + K  +   + + NAL+ M+ KCG V+ A+++   M+ R +V+
Sbjct: 457 ACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVT 516

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GLA +GRGLEA+  FE M    + P+   FV ++SAC    LV++GR  F SM+
Sbjct: 517 WNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMR 576

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI+P  +HY CMVD+L R+G + EA + I  MP + +  +W  L++AC A G +++ 
Sbjct: 577 KDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIG 636

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++ +  EP +   YV LS IYA    W    K+R++M +RG+KK PG + IE+  E
Sbjct: 637 EQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGE 696

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD+SH +++EIY  L+ + +++K  GYVP T  V+ D+++E KE A+  HSEKL
Sbjct: 697 VHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKL 756

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TPP TPIR+ KNLRVC DCH+ATKFISKI  REI+ RD HRFHHFK+
Sbjct: 757 AIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKN 811



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 3/308 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+KFT+  +L AC+    LN G+ VH  V++    ++  V N L+ MY  C G
Sbjct: 136 MQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKC-G 194

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFD M+ RD VSW+ + G YA  G + +++  +  M   GV P  IT + VLS
Sbjct: 195 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS 254

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK + + I +   +  V +  AL  M+ KCG V  A ++F  +  R +++
Sbjct: 255 ACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA 314

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GL   G+  EA  +F  ML+  V PD V ++ +LSAC+  G +  G+E      
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAV 374

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D G++  +     +++M  ++G +K+A +   +MP + + + W  L+      G++  +
Sbjct: 375 KD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGYADCGQVVES 432

Query: 301 ESITKRLI 308
            S  K+++
Sbjct: 433 FSTFKKML 440



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 166/312 (53%), Gaps = 15/312 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G   + + Y  +L++C    DL +GK VH  +L+F    ++++ NTL+ +Y  C G +
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC-GSV 95

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
              R++FD+ S +  VSW+ MI GYA  GL  +A +LF  MQ  G+ PD+ T V++LSAC
Sbjct: 96  NEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSAC 155

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           +   AL  G+ V   + +  +  +  + NALI M+AKCG V  A ++F +M  R  VSWT
Sbjct: 156 SSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWT 215

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++    A  G   E++  +  ML+ GV P  + ++ +LSAC     ++KG++        
Sbjct: 216 TLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQ---- 271

Query: 243 FGIIPKIEHYG------CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
              I + EH+        +  M  + G VK+A E  + +P   + I W T+I      G+
Sbjct: 272 ---IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSGQ 327

Query: 297 LKLAESITKRLI 308
           L+ A  +  R++
Sbjct: 328 LEEAHGMFHRML 339



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 154/295 (52%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P++ TY  VL AC  +  L  GK +H  +++ +   D+ V   L  MY  C G
Sbjct: 237 MLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKC-G 295

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VF+ +  RD ++W+ MIGG    G   +A  +F +M    V PD +T + +LS
Sbjct: 296 AVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILS 355

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G L  GK + +   K  +   V   NALI+M++K G +  A ++F  M  R +VS
Sbjct: 356 ACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS 415

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT+++ G A  G+ +E+ + F++ML+ GV  + + ++ +L ACS+   +  G+E    + 
Sbjct: 416 WTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              GI   +     ++ M  + G V++A    + M    + + W TLI      G
Sbjct: 476 KA-GIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNG 528



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 2/198 (1%)

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           D+ + +   G   D    V +L +C     L VGK V   I +  +  +V + N L+ ++
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
             CG V++A +LF   + +++VSW  +I+G A  G G EA  LF  M + G+ PD   FV
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            +LSACS    ++ GRE    +  + G+         ++ M  + G V++A      M  
Sbjct: 150 SILSACSSPAALNWGREVHVRVM-EAGLANNATVGNALISMYAKCGSVRDARRVFDAMA- 207

Query: 278 EANPIIWRTLISACCARG 295
             + + W TL  A    G
Sbjct: 208 SRDEVSWTTLTGAYAESG 225


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 320/506 (63%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML+  + P+  T+PF++KA   +  + +G+  H  +++F F +D++V+N+LVHMY +C  
Sbjct: 110 MLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGL 169

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E  R++FDEM  R+  +WS MI GYA+ 
Sbjct: 170 IAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKN 229

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
                AIDLF  M+  GV  +E  MV+V+S+C  LGALE G+    ++ K  +  ++ L 
Sbjct: 230 NCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILG 289

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DM+ +CG+++KA+++F  +  +  +SW+S+I GLA+HG   +A+  F +M+  G  
Sbjct: 290 TALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFS 349

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P D+    +LSACSH GLVDKG E +++MK D+GI P++EHYGC+VDML R+G++ EA  
Sbjct: 350 PRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAEN 409

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
           FI KMP++ N  I   L+ AC      ++AE +   LI  +P H   YVLLS+IYA   +
Sbjct: 410 FILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQ 469

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG-DKSHHQSKEIYEMLDEMGRKMK 389
           WEK   +R++M ++ +KK PG +LIE+D +I +F  G D+ H +  +I  + +E+  K++
Sbjct: 470 WEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIR 529

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY   T +   D++EE+KE A++ HSEKLAIA+ ++KT  GT IRIVKNLRVC DCH+
Sbjct: 530 LIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHT 589

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           ATK IS++Y RE +VRDR+RFHHF++
Sbjct: 590 ATKLISEVYGREFIVRDRNRFHHFRN 615



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 46/327 (14%)

Query: 10  KFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--------YGSCE 59
           +F +P   +L++C+   DL   K +HG +L+     D+ V + L+ +        +    
Sbjct: 10  RFKHPKLALLQSCSSFSDL---KIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPT 66

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +     +F ++   +   ++ +I  ++     + A   + QM  S + PD IT   ++
Sbjct: 67  NLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLI 126

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A T++  + VG+   S I +      V + N+L+ M+A CG +  A ++F  M  R +V
Sbjct: 127 KASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVV 186

Query: 180 SWTSVIAGLA--------------MHGRGL-----------------EAVALFEEMLEAG 208
           SWTS++AG                M  R L                 +A+ LFE M   G
Sbjct: 187 SWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREG 246

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V  ++   V ++S+C+H G ++ G    + +      +  I     +VDM  R G +++A
Sbjct: 247 VVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTA-LVDMYWRCGEIEKA 305

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
               +++P + + + W ++I      G
Sbjct: 306 IRVFEELP-DKDSLSWSSIIKGLAVHG 331


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/491 (43%), Positives = 308/491 (62%), Gaps = 17/491 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-------QFG---DDIHVQNT 50
           M+  G  PN  T   VL ACA +G  + G  +H   LK         FG   +D+ V N 
Sbjct: 399 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 458

Query: 51  LVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QIS 106
           L+ MY  C    +  R +FD+  + ER+ V+W+ MIGG+A+ G S DA+ LF +M  +  
Sbjct: 459 LIDMYSKCRS-FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 517

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCGDVD 164
           GV P+  T+  +L AC  L A+ +GK + +++ +     S    + N LIDM++KCGDVD
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 577

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F SM+ ++ +SWTS++ G  MHGRG EA+ +F++M +AG  PDD+ F+ +L ACS
Sbjct: 578 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 637

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           HCG+VD+G  YFDSM  D+G+ P+ EHY C +D+L RSGR+ +A   ++ MP+E   ++W
Sbjct: 638 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 697

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+SAC     ++LAE    +L+     ++ +Y L+S+IYA   RW+   +IR +M K 
Sbjct: 698 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 757

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+KK PG + ++       F  GD+SH  S +IY +L+ +  ++K  GYVP T+  L D+
Sbjct: 758 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDV 817

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +EE+K + L +HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EIVV
Sbjct: 818 DEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVV 877

Query: 465 RDRHRFHHFKD 475
           RD  RFHHFK+
Sbjct: 878 RDPSRFHHFKN 888



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 166/366 (45%), Gaps = 56/366 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+ FT P VLKAC  +     G + HG +    F  ++ + N LV MY  C G
Sbjct: 153 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-G 211

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPD 111
            +E    +FDE+++R   D +SW++++  + +   +  A+DLF +M +      +    D
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 271

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L A+   K V     +      V + NALID +AKCG ++ A+K+F 
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 331

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   WT+VIAG +  G   E
Sbjct: 332 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 391

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPK 248
           A+ LF +M+ +G  P+ V  + +LSAC+  G   +G E           ++ NDFG   +
Sbjct: 392 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 249 -IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKR 306
            +  Y  ++DM  +    K A      +P+E  N + W  +I      G+   A  +   
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 307 LIGNEP 312
           +I +EP
Sbjct: 512 MI-SEP 516



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 66/331 (19%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L AC  +  +   K VHG  ++     D+ V N L+  Y  C G +E   KVF+ M  +
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC-GLMENAVKVFNMMEFK 336

Query: 76  DSVSWSAM-----------------------------------IGGYARLGLSTDAIDLF 100
           D VSW+AM                                   I GY++ G S +A++LF
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV----------NRSVGLC 150
           RQM  SG  P+ +T+++VLSAC  LGA   G  + ++  K  +          +  + + 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 151 NALIDMFAKCGDVDKALKLFR--SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           NALIDM++KC     A  +F    +  R +V+WT +I G A +G   +A+ LF EM+   
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--------GCMVDM 258
            GV P+      +L AC+H   +  G++           + +   Y         C++DM
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQI-------HAYVLRHHRYESSAYFVANCLIDM 569

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             + G V  A      M  + + I W ++++
Sbjct: 570 YSKCGDVDTARHVFDSMS-QKSAISWTSMMT 599



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 121/267 (45%), Gaps = 14/267 (5%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           +V  Y +C G  +    V + ++   +V W+ +I  + + G    AI++  +M  +G  P
Sbjct: 102 VVASYLAC-GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 160

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+  VL AC +L +   G      I       +V +CNAL+ M+++CG +++A  +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 171 RSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEML------EAGVPPDDVAFVGLLS 221
             +  R I   +SW S+++          A+ LF +M             D ++ V +L 
Sbjct: 221 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 280

Query: 222 ACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           AC     V + +E + ++++N  G  P +     ++D   + G ++ A +    M  + +
Sbjct: 281 ACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-D 337

Query: 281 PIIWRTLISACCARGELKLAESITKRL 307
            + W  +++     G  + A  + K +
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNM 364



 Score = 38.1 bits (87), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 19/163 (11%)

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
           E FI      RS+G    ++  +  CG  D AL +   +     V W  +I      GR 
Sbjct: 90  EPFISP----RSLG--TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRL 143

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREYFDSMKNDFGIIPKI 249
             A+ +   ML AG  PD      +L AC       CG    G    +  +++  I    
Sbjct: 144 DSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFIC--- 200

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEA--NPIIWRTLISA 290
                +V M  R G ++EA     ++      + I W +++SA
Sbjct: 201 ---NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 240


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/476 (42%), Positives = 309/476 (64%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G   + +T+  V+KACA +  L LGK +H  V+   +G D++VQ  L+ +Y     
Sbjct: 180 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASD 239

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ +KVFD M +R  ++W+++I GY + GL  ++I LF  M  SG  PD  T+V++LS
Sbjct: 240 -MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 298

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+ LGAL+ G W+  + +    + +V L  +LI+M+ +CG+V KA ++F SM  R +V+
Sbjct: 299 SCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVT 358

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G  MHG G +A+ LF EM   G  P+++ FV +LSAC+H GL+D GR  F SMK
Sbjct: 359 WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 418

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-MPIEANPIIWRTLISACCARGELKL 299
             +G++P +EH  CMVDM  R+G + +A++FI+K +P E  P +W +++ AC       L
Sbjct: 419 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDL 478

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + + ++  EP +  +YV+LS+IYA   R ++   +R +M +R +KK  G + IE++ 
Sbjct: 479 GVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINR 538

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F  GDKSH Q+  IY  LDE+  +  ++GYVP    ++ D+ EE+++ AL  HSEK
Sbjct: 539 KTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEK 598

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LLKT  G  IRIVKNLR+C DCHSA K IS I +REI+VRD+ RFHHFKD
Sbjct: 599 LALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKD 654



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 132/268 (49%), Gaps = 10/268 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I   R++F  +   DS  + +++   ++ G S D +  +R+M  SG      T  +V+
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 196

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC DL AL +GK + S +        + +  ALI ++AK  D+  A K+F +M  RTI+
Sbjct: 197 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 256

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYF 236
           +W S+I+G   +G   E++ LF  M+E+G  PD    V LLS+CS  G +D G    +Y 
Sbjct: 257 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 316

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D    D  ++        +++M  R G V +A E    M  E N + W  +IS     G 
Sbjct: 317 DGNGFDLNVVLGTS----LINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGMHGY 371

Query: 297 LKLA-ESITK-RLIGNEPMHESNYVLLS 322
            + A E  T+ R  G  P + +   +LS
Sbjct: 372 GRQAMELFTEMRAYGPRPNNITFVAVLS 399



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++RS  L   LI +    G +  A +LF ++       + S++   +  G  ++ V  + 
Sbjct: 119 LHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYR 178

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            ML +G P  +  F  ++ AC+    +  G+E +   M   +G    ++    ++ +  +
Sbjct: 179 RMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ--AALIALYAK 236

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  +K A +    MP +   I W +LIS 
Sbjct: 237 ASDMKVAKKVFDAMP-QRTIIAWNSLISG 264


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/507 (41%), Positives = 318/507 (62%), Gaps = 35/507 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  T   V+ ACA   +L LG+ V   + + +   +++V N  + M+  C G
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKC-G 392

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARL------------------------------ 90
            +E+ R +FD M +RD VSW+ +I GYA++                              
Sbjct: 393 EVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQ 452

Query: 91  -GLSTDAIDLFRQMQI--SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            G   +A+ +FR++Q+  SG  PD++T+++ LSAC  LGA+++G+W+  +I+K+ +  + 
Sbjct: 453 SGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNR 512

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            L  +LIDM++K GDV+KA+++F S+  + +  W+++IAGLAMHGRG  A+ LF +M E 
Sbjct: 513 NLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQET 572

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            V P+ V F  LL ACSH GLVD+G+  FD M+  +G++PK +HY CMVD+L R+G ++E
Sbjct: 573 QVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEE 632

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A +FI+ MP+  +  +W  L+ ACC  G L+LAE    RL+  EP +   YVLLS++YAK
Sbjct: 633 ALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAK 692

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
              WE  +++R+ M   G+KK  G + IE+D  ++EF+ GD +H  S++IY  LDE+  +
Sbjct: 693 TGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMAR 752

Query: 388 MKKAGYVPTTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           ++  GYV  T  +L  + EE+ KE AL  HSEK+AIAF L++      IRIVKNLRVC D
Sbjct: 753 LRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRD 812

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHF 473
           CH+  K +SK+Y R+IV+RDR+RFHHF
Sbjct: 813 CHTVAKMVSKVYGRDIVLRDRYRFHHF 839



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 174/326 (53%), Gaps = 40/326 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNKFT+P ++KA A      +GK+VHG  +K  FGDD+ V N+L+H Y SC G ++L   
Sbjct: 238 PNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASC-GHLDLAYL 296

Query: 68  VFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF+  E + +D VSW++M+ G+ + G    A+DLF +M+  GV P+ +TMV+V+SAC   
Sbjct: 297 VFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKT 356

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G+ V  +I++  +  ++ +CNA IDMF KCG+V+ A  LF +M  R +VSWT++I
Sbjct: 357 MNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTII 416

Query: 186 AGLA-------------------------------MHGRGLEAVALFEE--MLEAGVPPD 212
            G A                                 GR  EA+A+F E  + ++G  PD
Sbjct: 417 DGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPD 476

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V  +  LSAC+  G +D G      +K +  I         ++DM  +SG V++A E  
Sbjct: 477 QVTLLSTLSACAQLGAMDIGEWIHGYIKKE-RIQLNRNLATSLIDMYSKSGDVEKAIEVF 535

Query: 273 QKMPIEANPIIWRTLIS--ACCARGE 296
             +    +  +W  +I+  A   RGE
Sbjct: 536 HSIG-NKDVFVWSAMIAGLAMHGRGE 560



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 15/295 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           + + C     L   K +H  +L+     D +  + L      S    ++  RKVFD++ +
Sbjct: 145 LFQQCTSFKQL---KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQ 201

Query: 75  RDSVSWSAMIGGYARLGLSTDAID----LFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            +  SW+ +I     L  S+D I       R +  S   P++ T   ++ A  +     V
Sbjct: 202 PNLYSWNILIRA---LATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLV 258

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGL 188
           GK V     K      V + N+LI  +A CG +D A  +F  +  N + IVSW S++ G 
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G   +A+ LFE M   GV P+ V  V ++SAC+    +  GR+  D +  +  ++  
Sbjct: 319 VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRN-EMMMN 377

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           +      +DM  + G V+ A      M  + + + W T+I       E  +A  I
Sbjct: 378 LNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTIIDGYAKMSEHGIARDI 431


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/491 (43%), Positives = 308/491 (62%), Gaps = 17/491 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-------QFG---DDIHVQNT 50
           M+  G  PN  T   VL ACA +G  + G  +H   LK         FG   +D+ V N 
Sbjct: 392 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 451

Query: 51  LVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QIS 106
           L+ MY  C    +  R +FD+  + ER+ V+W+ MIGG+A+ G S DA+ LF +M  +  
Sbjct: 452 LIDMYSKCRS-FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 510

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCGDVD 164
           GV P+  T+  +L AC  L A+ +GK + +++ +     S    + N LIDM++KCGDVD
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 570

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F SM+ ++ +SWTS++ G  MHGRG EA+ +F++M +AG  PDD+ F+ +L ACS
Sbjct: 571 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 630

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           HCG+VD+G  YFDSM  D+G+ P+ EHY C +D+L RSGR+ +A   ++ MP+E   ++W
Sbjct: 631 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 690

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+SAC     ++LAE    +L+     ++ +Y L+S+IYA   RW+   +IR +M K 
Sbjct: 691 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 750

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+KK PG + ++       F  GD+SH  S +IY +L+ +  ++K  GYVP T+  L D+
Sbjct: 751 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDV 810

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +EE+K + L +HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EIVV
Sbjct: 811 DEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVV 870

Query: 465 RDRHRFHHFKD 475
           RD  RFHHFK+
Sbjct: 871 RDPSRFHHFKN 881



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 166/366 (45%), Gaps = 56/366 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+ FT P VLKAC  +     G + HG +    F  ++ + N LV MY  C G
Sbjct: 146 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-G 204

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPD 111
            +E    +FDE+++R   D +SW++++  + +   +  A+DLF +M +      +    D
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 264

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L A+   K V     +      V + NALID +AKCG ++ A+K+F 
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 324

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   WT+VIAG +  G   E
Sbjct: 325 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 384

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPK 248
           A+ LF +M+ +G  P+ V  + +LSAC+  G   +G E           ++ NDFG   +
Sbjct: 385 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 249 -IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKR 306
            +  Y  ++DM  +    K A      +P+E  N + W  +I      G+   A  +   
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 307 LIGNEP 312
           +I +EP
Sbjct: 505 MI-SEP 509



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 66/331 (19%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L AC  +  +   K VHG  ++     D+ V N L+  Y  C G +E   KVF+ M  +
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC-GLMENAVKVFNMMEFK 329

Query: 76  DSVSWSAM-----------------------------------IGGYARLGLSTDAIDLF 100
           D VSW+AM                                   I GY++ G S +A++LF
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV----------NRSVGLC 150
           RQM  SG  P+ +T+++VLSAC  LGA   G  + ++  K  +          +  + + 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 151 NALIDMFAKCGDVDKALKLFR--SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           NALIDM++KC     A  +F    +  R +V+WT +I G A +G   +A+ LF EM+   
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--------GCMVDM 258
            GV P+      +L AC+H   +  G++           + +   Y         C++DM
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQI-------HAYVLRHHRYESSAYFVANCLIDM 562

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             + G V  A      M  + + I W ++++
Sbjct: 563 YSKCGDVDTARHVFDSMS-QKSAISWTSMMT 592



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 121/267 (45%), Gaps = 14/267 (5%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           +V  Y +C G  +    V + ++   +V W+ +I  + + G    AI++  +M  +G  P
Sbjct: 95  VVASYLAC-GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 153

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+  VL AC +L +   G      I       +V +CNAL+ M+++CG +++A  +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 171 RSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEML------EAGVPPDDVAFVGLLS 221
             +  R I   +SW S+++          A+ LF +M             D ++ V +L 
Sbjct: 214 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 273

Query: 222 ACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           AC     V + +E + ++++N  G  P +     ++D   + G ++ A +    M  + +
Sbjct: 274 ACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-D 330

Query: 281 PIIWRTLISACCARGELKLAESITKRL 307
            + W  +++     G  + A  + K +
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNM 357



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 19/163 (11%)

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
           E FI      RS+G    ++  +  CG  D AL +   +     V W  +I      GR 
Sbjct: 83  EPFISP----RSLG--TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRL 136

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREYFDSMKNDFGIIPKI 249
             A+ +   ML AG  PD      +L AC       CG    G    +  +++  I    
Sbjct: 137 DSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFIC--- 193

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEA--NPIIWRTLISA 290
                +V M  R G ++EA     ++      + I W +++SA
Sbjct: 194 ---NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 233


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/476 (42%), Positives = 309/476 (64%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G   + +T+  V+KACA +  L LGK +H  V+   +G D++VQ  L+ +Y     
Sbjct: 116 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASD 175

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ +KVFD M +R  ++W+++I GY + GL  ++I LF  M  SG  PD  T+V++LS
Sbjct: 176 -MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 234

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+ LGAL+ G W+  + +    + +V L  +LI+M+ +CG+V KA ++F SM  R +V+
Sbjct: 235 SCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVT 294

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G  MHG G +A+ LF EM   G  P+++ FV +LSAC+H GL+D GR  F SMK
Sbjct: 295 WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 354

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-MPIEANPIIWRTLISACCARGELKL 299
             +G++P +EH  CMVDM  R+G + +A++FI+K +P E  P +W +++ AC       L
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDL 414

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + + ++  EP +  +YV+LS+IYA   R ++   +R +M +R +KK  G + IE++ 
Sbjct: 415 GVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINR 474

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F  GDKSH Q+  IY  LDE+  +  ++GYVP    ++ D+ EE+++ AL  HSEK
Sbjct: 475 KTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEK 534

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LLKT  G  IRIVKNLR+C DCHSA K IS I +REI+VRD+ RFHHFKD
Sbjct: 535 LALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKD 590



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 8/234 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I   R++F  +   DS  + +++   ++ G S D +  +R+M  SG      T  +V+
Sbjct: 73  GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 132

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC DL AL +GK + S +        + +  ALI ++AK  D+  A K+F +M  RTI+
Sbjct: 133 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 192

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYF 236
           +W S+I+G   +G   E++ LF  M+E+G  PD    V LLS+CS  G +D G    +Y 
Sbjct: 193 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 252

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           D    D  ++        +++M  R G V +A E    M  E N + W  +IS 
Sbjct: 253 DGNGFDLNVVLGTS----LINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISG 301



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++RS  L   LI +    G +  A +LF ++       + S++   +  G  ++ V  + 
Sbjct: 55  LHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYR 114

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            ML +G P  +  F  ++ AC+    +  G+E +   M   +G    ++    ++ +  +
Sbjct: 115 RMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ--AALIALYAK 172

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  +K A +    MP +   I W +LIS 
Sbjct: 173 ASDMKVAKKVFDAMP-QRTIIAWNSLISG 200


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 313/508 (61%), Gaps = 34/508 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  +G + + FT+PFVLK+   +  + +GK VHG +L+     D++V  +L+ +YG C  
Sbjct: 162 MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGE 221

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I+    +F+ M  R+ VSW+ MI GY++ 
Sbjct: 222 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQS 281

Query: 91  GLSTDAIDLFRQM--QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           GL+  A+ LF +M  + SGV P+ +T+++VL AC  L  LE G+ +     +  +N +  
Sbjct: 282 GLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNAS 341

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           +  AL  M+AKCG +  A   F  +N   + +++W ++I   A +G GL+AV+ F EM++
Sbjct: 342 VLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQ 401

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           AG+ PDD+ F GLLS CSH GLVD G +YF+ M   + I P++EHY C+ D+L R+GR+ 
Sbjct: 402 AGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLA 461

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA + + +MP+ A P IW +L++AC     L++AE+  ++L   EP +  NYVLLS++YA
Sbjct: 462 EASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYA 521

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
           +  RW++  K+R ++  +G KK PG + IE++ + + F+ GD SH Q KEIY  L+ +  
Sbjct: 522 EAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPE 581

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           KMK AGY P TS VL DI+EE+KE  L  HSEKLA+AF +L TP  T +R+ KNLR+C D
Sbjct: 582 KMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGD 641

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFK 474
           CH+A  FIS+IY RE++VRD +RFHHFK
Sbjct: 642 CHTAMVFISEIYGREVIVRDINRFHHFK 669



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 36/335 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P   +Y  V +   G+  L LG  VH  +L         V + +V  Y S  G I+    
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYAS-SGDIDSSVS 126

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ + E  S+ +++MI  YAR G +   +  +  M   G   D  T   VL +  +L +
Sbjct: 127 VFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLS 186

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD------------------------- 162
           + +GK V   I +  +   + +  +LI ++ KCG+                         
Sbjct: 187 VWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAG 246

Query: 163 ------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML--EAGVPPDDV 214
                 +D AL +F  M  R IVSWT++I+G +  G   +A++LF+EM+  ++GV P+ V
Sbjct: 247 YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWV 306

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
             + +L AC+    +++GR+  + +    G+         +  M  + G + +A     K
Sbjct: 307 TIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDK 365

Query: 275 MP-IEANPIIWRTLISACCARGELKLAESITKRLI 308
           +   E N I W T+I+A  + G    A S  + +I
Sbjct: 366 LNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMI 400


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/475 (43%), Positives = 307/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V     T    L ACA +GD+  G+ VH  + + + G D+ V N+L+ MY  C+ 
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKR 427

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  ++F+ +  +  VSW+AMI GYA+ G   +AID F +MQ+  + PD  TMV+V+ 
Sbjct: 428 -VDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIP 486

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L  L   KW+   + +  ++++V +  AL+DM+AKCG V  A KLF  M+ R + +
Sbjct: 487 ALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTT 546

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  A+ LFE+M +  + P++V F+ +LSACSH GLV++G +YF SMK
Sbjct: 547 WNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMK 606

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P ++HYG MVD+L R+ R+ EA +FIQKMPIE    ++  ++ AC     ++L 
Sbjct: 607 KDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELG 666

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    R+   +P     +VLL++IYA    W+K  ++R  M+K+G++K PG +++EL NE
Sbjct: 667 EKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNE 726

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  SH Q+K+IY  L+ +G ++K AGY+P T+ V  D+ +  KE  LN HSEKL
Sbjct: 727 VHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKL 785

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF+LL T PGT I + KNLRVC DCH+ATK+IS +  REI+VRD  RFHHFKD
Sbjct: 786 AIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKD 840



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 191/387 (49%), Gaps = 23/387 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P  + + ++LK C    DL  GK +H  ++   F  ++     +V+MY  C   +E 
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL-VEE 228

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+FD M ERD V W+ +I GYA+ G    A++L  +MQ  G  PD IT+V++L A  D
Sbjct: 229 AYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVAD 288

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +G+L +G+ +  +  +      V +  AL+DM++KCG V  A  +F  M G+T+VSW S+
Sbjct: 289 VGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSM 348

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G   +G    A+ +F++M++  V   +V  +G L AC+  G V++GR +   + +   
Sbjct: 349 IDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGR-FVHKLLDQLE 407

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA-ESI 303
           +   +     ++ M  +  RV  A E  + +      + W  +I      G +  A +  
Sbjct: 408 LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ-HKTLVSWNAMILGYAQNGRINEAIDYF 466

Query: 304 TKRLIGNEPMHESNYVLLSHIYA-------KLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
            K  + N  +   ++ ++S I A          +W     IR  +DK        + L++
Sbjct: 467 CKMQLQN--IKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDK---NVFVATALVD 521

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +  +     CG  + H ++++++M+DE
Sbjct: 522 MYAK-----CG--AVHTARKLFDMMDE 541



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P+  T   +L A A +G L +G+S+HG  ++  F   ++V   LV MY  C G
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKC-G 325

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M+ +  VSW++MI GY + G    A+++F++M    V    +T++  L 
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALH 385

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG +E G++V   +++  +   V + N+LI M++KC  VD A ++F ++  +T+VS
Sbjct: 386 ACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVS 445

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--------------- 225
           W ++I G A +GR  EA+  F +M    + PD    V ++ A +                
Sbjct: 446 WNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVI 505

Query: 226 --------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                               CG V   R+ FD M         +  +  M+D     G  
Sbjct: 506 RTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-----HVTTWNAMIDGYGTHGLG 560

Query: 266 KEAHEFIQKMP---IEANPIIWRTLISACCARG 295
           K A E  +KM    I+ N + +  ++SAC   G
Sbjct: 561 KAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 8/281 (2%)

Query: 48  QNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           Q  LV ++  C+ G +    +VF  + ++    +  M+ GYAR     DA+  F +M+  
Sbjct: 112 QTKLVSLF--CKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYD 169

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           GV P       +L  C D   L  GK +   +       +V     +++M+AKC  V++A
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            K+F  M  R +V W ++I+G A +G G  A+ L   M E G  PD +  V +L A +  
Sbjct: 230 YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADV 289

Query: 227 GLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
           G +  GR     SM+  F     +     +VDM  + G V  A     +M      + W 
Sbjct: 290 GSLRIGRSIHGYSMRAGFESFVNVS--TALVDMYSKCGSVGTARLIFDRM-TGKTVVSWN 346

Query: 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           ++I      G+   A  I ++++ +E +  +N  ++  ++A
Sbjct: 347 SMIDGYVQNGDPGAAMEIFQKMM-DEQVEMTNVTVMGALHA 386


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/474 (42%), Positives = 304/474 (64%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G   ++ T+    KA   +  L  GK +H  V+K +F  D+ V + ++ MY  C G
Sbjct: 491 MHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKC-G 549

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RKVF+++   D V+W+ +I G    G    A+  + QM+++GV PDE T  T++ 
Sbjct: 550 EMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVK 609

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L ALE GK + + I K        +  +L+DM+AKCG+++ A  LFR MN R++  
Sbjct: 610 ACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVAL 669

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GLA HG   EA+  F EM   GV PD V F+G+LSACSH GL     + FDSM+
Sbjct: 670 WNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQ 729

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P+IEHY C+VD L R+G ++EA + +  MP EA+  ++RTL++AC  +G+ +  
Sbjct: 730 KTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETG 789

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + ++L   +P   + YVLLS+IYA   +WE     R +M +  +KK PG + I++ N+
Sbjct: 790 ERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNK 849

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD+SH ++  IY  ++ + +++K+ GYVP T   L+DI EEDKE AL+ HSEKL
Sbjct: 850 VHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKL 909

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIA+ L+KTPP T +R++KNLRVC DCH+A K+IS ++ REIV+RD +RFHHF+
Sbjct: 910 AIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFR 963



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 160/321 (49%), Gaps = 18/321 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V  +  TY  +L   A +  L LGK +HGAV++F +   + V N+ ++MY    G
Sbjct: 288 MIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKA-G 346

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R++F +M E D +SW+ +I G AR GL   ++ LF  +  SG+ PD+ T+ +VL 
Sbjct: 347 SVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLR 406

Query: 121 ACTDL-GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ L  +  VG+ V +   K  +     +  ALID+++K G +++A  LF + +G  + 
Sbjct: 407 ACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLA 466

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW +++ G  +     EA+ LF  M E G   D + F     A      + +G++     
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQI---- 522

Query: 240 KNDFGIIPKIE-HYGCMV-----DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
                ++ K+  HY   V     DM  + G +K A +   ++P   + + W T+IS C  
Sbjct: 523 ---HAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVE 578

Query: 294 RGELKLAESI--TKRLIGNEP 312
            GE + A       RL G +P
Sbjct: 579 NGEEEQALFTYHQMRLAGVQP 599



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           +L  G+ P++FT   VL+AC+ + +   +G+ VH   LK     D  V   L+ +Y S  
Sbjct: 389 LLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVY-SKG 447

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E    +F      D  SW+AM+ G+       +A+ LF  M   G   D+IT     
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAA 507

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A   L  L+ GK + + + K   +  + + + ++DM+ KCG++  A K+F  +     V
Sbjct: 508 KAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDV 567

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +WT+VI+G   +G   +A+  + +M  AGV PD+  F  L+ ACS    +++G++ + + 
Sbjct: 568 AWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANI 627

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           MK +    P +     +VDM  + G +++A+   ++M   +   +W  +I      G
Sbjct: 628 MKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTRS-VALWNAMIVGLAQHG 681



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 30/287 (10%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
            + T   + K C   G  +  +++ G  +K     D+ V   LV++Y   +  I   R +
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQR-IREARVL 179

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD M  RD V W+ M+  Y  +G   + + LF     SG+ PD +++ T+L        +
Sbjct: 180 FDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------M 231

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            VGK       K +  R +    A             A KLF   +   +  W   ++  
Sbjct: 232 GVGK-------KTVFERELEQVRAY------------ATKLFVCDDDSDVTVWNKTLSSY 272

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G G EAV  F +M+++ VP D + ++ +LS  +    ++ G++   ++   FG    
Sbjct: 273 LQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQF 331

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +      ++M  ++G V  A     +M  E + I W T+IS C   G
Sbjct: 332 VSVANSAINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGCARSG 377



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+F    + D   W+  +  Y + G   +A+D FR M  S V  D +T + +LS    L 
Sbjct: 252 KLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLN 311

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            LE+GK +   + +   ++ V + N+ I+M+ K G V+ A ++F  M    ++SW +VI+
Sbjct: 312 HLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVIS 371

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           G A  G    ++ LF ++L +G+ PD      +L ACS
Sbjct: 372 GCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 5   GVSPNKF--TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
            VSP+     +  +L+      DL LGK  H  ++      D +V N L+ MY  C G +
Sbjct: 6   SVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKC-GSL 64

Query: 63  ELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTD------AIDLFRQMQISGVCPDEIT 114
              RK+FD    S+RD V+++A++  YA  G   D      A  +FR ++ S +     T
Sbjct: 65  FSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHT 124

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +  +   C   G+    + ++ +  K  +   V +  AL++++AK   + +A  LF  M 
Sbjct: 125 LSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMP 184

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
            R +V W  ++      G G E + LF     +G+ PD V+   +L
Sbjct: 185 VRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/415 (47%), Positives = 283/415 (68%), Gaps = 2/415 (0%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  R++FDE  E+   SW+AMI GY + GL+  AI LF++M +  + P+ +T+ ++LSA
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSA 424

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  LGAL +GKWV   I+ + +  +V +  AL+DM+AKCG + +A +LF  M  + +V+W
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTW 484

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I G  +HG G EA+ LF EML++G+PP  V F+ +L ACSH GLV +G E F SM N
Sbjct: 485 NAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN 544

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           ++G  P  EHY CMVD+L R+G++  A EFI++MP+E  P +W  L+ AC      ++A 
Sbjct: 545 NYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMAN 604

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
             +KRL   +P +   YVLLS+IY+    + K   +R+V+ KR + K PG TLIE+D++ 
Sbjct: 605 VASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQ 664

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY-VPTTSEVLLDINEEDKEDALNKHSEKL 420
           Y F  GD+SH Q+  I+EML+++  KM++AGY   T +  L D+ +E+KE  +N HSEKL
Sbjct: 665 YVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKL 724

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T PGT IRI+KNLRVC DCH+ATKFISKI  R IVVRD +RFHHFK+
Sbjct: 725 AIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKN 779



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 6/317 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTY F + A + + D  +G  +H   +      ++ V + +V +Y       EL RK
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA-ELARK 169

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M ERD+V W+ MI G++R     D+I +F  M   G+  D  T+ TVL+A  +L  
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
             +G  ++    K+ ++  V +   LI +++KCG   K   LF  ++   ++S+ ++I+G
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISG 289

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              +     AV LF E+L +G   +    VGL+        +   R    ++    GII 
Sbjct: 290 YTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR-LIQNLSLKIGIIL 348

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +      +  + CR   V+ A +   + P E +   W  +IS     G    A S+ + +
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 308 IGNEPMHESNYVLLSHI 324
           +   P    N V ++ I
Sbjct: 408 M---PQLSPNPVTVTSI 421



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G+S +  T   VL A A + +  LG  +     K     D++V   L+ +Y  C  
Sbjct: 205 MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGK 264

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             + GR +FD++ + D +S++AMI GY     +  A+ LFR++  SG   +  T+V ++ 
Sbjct: 265 SCK-GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                  L++ + +++   K  +     +  AL  ++ +  +V  A +LF     +++ S
Sbjct: 324 VYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLAS 383

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G   +G    A++LF+EM+   + P+ V    +LSAC+  G +  G+     +K
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++  +   +     +VDM  + G + EA +    M ++ N + W  +I+     G  K A
Sbjct: 443 SE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEA 500


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/415 (47%), Positives = 283/415 (68%), Gaps = 2/415 (0%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  R++FDE  E+   SW+AMI GY + GL+  AI LF++M +  + P+ +T+ ++LSA
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSA 424

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  LGAL +GKWV   I+ + +  +V +  AL+DM+AKCG + +A +LF  M  + +V+W
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTW 484

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I G  +HG G EA+ LF EML++G+PP  V F+ +L ACSH GLV +G E F SM N
Sbjct: 485 NAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN 544

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           ++G  P  EHY CMVD+L R+G++  A EFI++MP+E  P +W  L+ AC      ++A 
Sbjct: 545 NYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMAN 604

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
             +KRL   +P +   YVLLS+IY+    + K   +R+V+ KR + K PG TLIE+D++ 
Sbjct: 605 VASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQ 664

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY-VPTTSEVLLDINEEDKEDALNKHSEKL 420
           Y F  GD+SH Q+  I+EML+++  KM++AGY   T +  L D+ +E+KE  +N HSEKL
Sbjct: 665 YVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKL 724

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T PGT IRI+KNLRVC DCH+ATKFISKI  R IVVRD +RFHHFK+
Sbjct: 725 AIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKN 779



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 6/317 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTY F + A + + D  +G  +H   +      ++ V + +V +Y       EL RK
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA-ELARK 169

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M ERD+V W+ MI G++R     D+I +F  M   G+  D  T+ TVL+A  +L  
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
             +G  ++    K+ ++  V +   LI +++KCG   K   LF  ++   ++S+ ++I+G
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISG 289

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              +     AV LF E+L +G   +    VGL+        +   R    ++    GII 
Sbjct: 290 YTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR-LIQNLSLKIGIIL 348

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +      +  + CR   V+ A +   + P E +   W  +IS     G    A S+ + +
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 308 IGNEPMHESNYVLLSHI 324
           +   P    N V ++ I
Sbjct: 408 M---PQLSPNPVTVTSI 421



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G+S +  T   VL A A + +  LG  +     K     D++V   L+ +Y  C  
Sbjct: 205 MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGK 264

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             + GR +FD++ + D +S++AMI GY     +  A+ LFR++  SG   +  T+V ++ 
Sbjct: 265 SCK-GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                  L++ + +++   K  +     +  AL  ++ +  +V  A +LF     +++ S
Sbjct: 324 VYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLAS 383

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G   +G    A++LF+EM+   + P+ V    +LSAC+  G +  G+     +K
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++  +   +     +VDM  + G + EA +    M ++ N + W  +I+     G  K A
Sbjct: 443 SE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEA 500


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/475 (44%), Positives = 306/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+ G+ PN  T+  +L  C     L LGK VH  ++K     D+HV N LV M+ +C G
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC-G 563

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +F++M +RD VSW+ +I G+ + G +  A D F+ MQ SG+ PD+IT   +L+
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    AL  G+ + + I +   +  V +   LI M+ KCG ++ A ++F  +  + + S
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+IAG A HGRG EA+ LF +M + GV PD + FVG LSAC+H GL+++G  +F SMK
Sbjct: 684 WTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK 743

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +F I P++EHYGCMVD+  R+G + EA EFI KM +E +  +W  L+ AC     ++LA
Sbjct: 744 -EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELA 802

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++ +  +P     +V+LS+IYA    W++  K+R+VM  RG+ K PG + IE+D +
Sbjct: 803 EKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGK 862

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   DK+H Q++EI+  L+ +  +M++ GYVP T  VL D+ + +KE AL  HSE+L
Sbjct: 863 VHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERL 922

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI + LLKTPP TPI I KNLRVC DCH+ATKFISKI  R+I+ RD +RFHHFKD
Sbjct: 923 AITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 172/291 (59%), Gaps = 5/291 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P+K T+  +L ACA   +++ G+ ++  +LK  +  D+ V   L++M+  C G
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKC-G 260

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    KVFD +  RD V+W++MI G AR G    A +LF++M+  GV PD++  V++L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    ALE GK V + +++   +  + +  A++ M+ KCG ++ AL++F  + GR +VS
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           WT++IAG A HGR  EA   F +M+E+G+ P+ V F+ +L ACS    + +G++  D  +
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  +G   ++     ++ M  + G +K+AH   +K+  + N + W  +I+A
Sbjct: 441 EAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITA 488



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 169/330 (51%), Gaps = 34/330 (10%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  +L+ C    +L  G+ ++  + K     DI ++NTL++MY  C   I   +++FD+
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTIS-AKQIFDD 170

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M E+D  SW+ ++GGY + GL  +A  L  QM    V PD+ T V++L+AC D   ++ G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + + + I K   +  + +  ALI+M  KCGD+  A K+F ++  R +V+WTS+I GLA H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN---------D 242
           GR  +A  LF+ M E GV PD VAFV LL AC+H   +++G++    MK           
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 243 FGIIPKIEHYGCMVDML---------------------CRSGRVKEAHEFIQKM---PIE 278
             I+      G M D L                      + GR+ EA  F  KM    IE
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLI 308
            N + + +++ AC +   LK  + I   +I
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHII 440



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 161/300 (53%), Gaps = 3/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ PN+ T+  +L AC+    L  G+ +   +++  +G D  V+  L+ MY  C G
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC-G 462

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF+++S+++ V+W+AMI  Y +     +A+  F+ +   G+ P+  T  ++L+
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C    +LE+GKWV   I K  +   + + NAL+ MF  CGD+  A  LF  M  R +VS
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG   HG+   A   F+ M E+G+ PD + F GLL+AC+    + +GR    ++ 
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALI 641

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +      +     ++ M  + G +++AH+   K+P + N   W ++I+     G  K A
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEA 700



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 156/301 (51%), Gaps = 5/301 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+K  +  +L+AC     L  GK VH  + +  +  +I+V   ++ MY  C G
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKC-G 361

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VFD +  R+ VSW+AMI G+A+ G   +A   F +M  SG+ P+ +T +++L 
Sbjct: 362 SMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   AL+ G+ ++  I +        +  AL+ M+AKCG +  A ++F  ++ + +V+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W ++I     H +   A+A F+ +L+ G+ P+   F  +L+ C     ++ G+  +F  M
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K   G+   +     +V M    G +  A      MP + + + W T+I+     G+ ++
Sbjct: 542 KA--GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQV 598

Query: 300 A 300
           A
Sbjct: 599 A 599



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +D+   +A++   ++ G   +A+ +  ++  S +     T   +L  C     L  G+ +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            + I+K  V   + + N LI+M+AKCG+   A ++F  M  + + SW  ++ G   HG  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA  L E+M++  V PD   FV +L+AC+    VDKGRE ++ +    G    +     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +++M  + G + +A +    +P   + + W ++I+     G  K A ++ +R+
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRM 303


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 307/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+ G+ P+  T+  +L  C     L LGK V   +++  F  D+H++N LV M+ +C G
Sbjct: 499 LLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNC-G 557

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F++M ERD VSW+ +I G+ + G +  A D F+ MQ SGV PD+IT   +L+
Sbjct: 558 DLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLN 617

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    AL  G+ + + I +  ++  V +   LI M+ KCG +D A  +F ++  + + S
Sbjct: 618 ACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYS 677

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HGRG EA+ LF +M + GV PD + FVG LSAC+H GL+ +G  +F+SMK
Sbjct: 678 WTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK 737

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF I P++EHYGCMVD+  R+G + EA EFI KM ++ +  +W  L+ AC    +++LA
Sbjct: 738 -DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELA 796

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + ++ +  +P  +  YV+LS+IYA    W++ TK+R+VM  RG+ K PG + IE+D  
Sbjct: 797 EKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGR 856

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   DK+H Q +EI+  L  +  +MKK GYVP T  VL D+ + +KE AL  HSE+L
Sbjct: 857 VHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERL 916

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ LLKTPP TPI I KNLRVC DCH+ATK ISKI  R+I+ RD +RFHHFKD
Sbjct: 917 AIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKD 971



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 168/290 (57%), Gaps = 3/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ GV P+K+T+ ++L ACA   +++ G  +   +L   +  D+ V   L++M+  C G
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC-G 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G++   KVF+ +  RD ++W++MI G AR      A +LF+ M+  GV PD++  V++L 
Sbjct: 255 GVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLK 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    ALE GK V + +++  ++  + +  AL+ M+ KCG ++ AL++F  + GR +VS
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++IAG A HGR  EA   F +M+E+G+ P+ V F+ +L ACS    + +GR+  D + 
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              G I        ++ M  + G + +A    +++  + N + W  +I+A
Sbjct: 435 KA-GYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITA 482



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 158/300 (52%), Gaps = 3/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ PN+ T+  +L AC+    L  G+ +H  ++K  +  D  V+  L+ MY  C G
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKC-G 456

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VF+ +S+++ V+W+AMI  Y +     +A+  F+ +   G+ PD  T  ++L+
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C    ALE+GKWV+S I +      + + NAL+ MF  CGD+  A+ LF  M  R +VS
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG   HG    A   F+ M E+GV PD + F GLL+AC+    + +GR    ++ 
Sbjct: 577 WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRR-LHALI 635

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  +   +     ++ M  + G + +AH     +P + N   W ++I+     G  K A
Sbjct: 636 TEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEA 694



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 218/488 (44%), Gaps = 54/488 (11%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  +L+ C    +L  G+ +H  +   +   DI + N L+ MY  C G     +++FDE
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKC-GNTNSAKQIFDE 164

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M ++D  SW+ ++GGY +     +A  L  QM   GV PD+ T V +L+AC D   ++ G
Sbjct: 165 MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKG 224

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             + S I     +  + +  ALI+M  KCG VD ALK+F ++  R +++WTS+I GLA H
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK----------- 240
            +  +A  LF+ M E GV PD VAFV LL AC+H   +++G+     MK           
Sbjct: 285 RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVG 344

Query: 241 -----------------NDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIE 278
                              F ++    +  +  M+    + GR++EA  F  KM    IE
Sbjct: 345 TALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE 404

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338
            N + + +++ AC     LK    I  R+I      ++ Y+    +   LL      K  
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRII------KAGYITDDRVRTALL--SMYAKCG 456

Query: 339 EVMDKRGM-KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTT 397
            +MD R + ++I    ++  +  I  +V  +K  +       +L E        G  P +
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE--------GIKPDS 508

Query: 398 SEVLLDINEEDKEDALN--KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
           S     +N     DAL   K  + L I  A  ++       +V     C D  SA    +
Sbjct: 509 STFTSILNVCKSPDALELGKWVQSLIIR-AGFESDLHIRNALVSMFVNCGDLMSAMNLFN 567

Query: 456 KIYNREIV 463
            +  R++V
Sbjct: 568 DMPERDLV 575


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 322/506 (63%), Gaps = 32/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V  N +T+PF+LKAC+ +  L   + +H  ++K  FG +I+  N+L+++Y S  G
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVY-SKSG 167

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR------------------------------- 89
            I+  R +FD++ +RD+VSW++MI GY +                               
Sbjct: 168 DIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVG 227

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +A++LF +MQ +G+  D + +V+ L AC DLG L+ GKW+ ++I+K  +     L
Sbjct: 228 AGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL 287

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              LIDM+AKCGD+++A+++FR M  + +  WT++I+G A+HGRG EA+  F +M  AGV
Sbjct: 288 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGV 347

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ + F G+L+ACSH GLV + +  F+SM+   G  P IEHYGCMVD+L R+G +KEA 
Sbjct: 348 EPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 407

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E I+ MP++ N  IW  L++AC   G L+L + I K LI  +P H   Y+ L+ I+A   
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 467

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W +  ++R  M ++G+ K+PG ++I ++   +EF+ GD+SH Q KEI  ML+++  +++
Sbjct: 468 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 527

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           + GY P   ++LLD+ +++KE A++ HSEKLA+ F L+ T PG  IRIVKNLRVC DCH+
Sbjct: 528 EEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHT 587

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             K ISK+Y REI++RDR RFH FKD
Sbjct: 588 VIKLISKVYAREILMRDRTRFHLFKD 613



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+ C+ + +L   + +HG +LK     D+I     L        G +   R VFD +  
Sbjct: 24  LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            ++  W+ MI GY+      +A+ L+  M    V  +  T   +L AC+ + ALE  + +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 135 ESFIEK-------------------------------QMVNRSVGLCNALIDMFAKCGDV 163
            + I K                               Q+  R     N++ID + KCG++
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A ++F  M  R I+SWTS+I+G    G+  EA+ LF  M  AG+  D+VA V  L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 224 SHCGLVDKGREYFDSM-KNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANP 281
           +  G++D+G+     + K++  I P +   GC ++DM  + G ++EA E  +KM  E   
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGV 316

Query: 282 IIWRTLIS--ACCARGELKLAESITKRLIGNEP 312
            +W  +IS  A   RG   L   +  +  G EP
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 349


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/505 (42%), Positives = 298/505 (59%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M   GV PNK T+  +L+AC   G L  G+ +H  + K  F  D  +Q  + +MY  C  
Sbjct: 355 MRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGS 414

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +    KVF EM  R+ VSW+ MI GYA+ 
Sbjct: 415 IYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQN 474

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G      +L   M+  G  PD +T++T+L AC  L  LE GK V +   K  +     + 
Sbjct: 475 GDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVA 534

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            +LI M++KCG V +A  +F  M+ R  V+W +++AG   HG GLEAV LF+ ML+  V 
Sbjct: 535 TSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVS 594

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+++    ++SACS  GLV +GRE F  M+ DF + P+ +HYGCMVD+L R+GR++EA E
Sbjct: 595 PNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEE 654

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
           FIQ MP E +  +W  L+ AC +   ++LAE     ++  EP + S Y+ LS+IYA+  R
Sbjct: 655 FIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGR 714

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+  TK+R VMD RG+KK  G + IE+D  I+ FV  D +H +   I+  L+ + ++MK+
Sbjct: 715 WDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKE 774

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY P    VL D+++  KE AL  HSEKLAIA+ LLKTP GTPIRI+KNLRVC DCH+A
Sbjct: 775 AGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTA 834

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISKI  REIV RD +RFH+F +
Sbjct: 835 TKFISKIRKREIVARDANRFHYFNN 859



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 160/301 (53%), Gaps = 4/301 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G+  N  TY  V++ CA       GK VH  + +     DI++ N+L++ Y   E  +
Sbjct: 49  QRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFED-V 107

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               +VF  M+ RD V+WS+MI  YA       A D F +M  + + P+ IT +++L AC
Sbjct: 108 ASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKAC 167

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +   LE G+ + + ++   +   V +  ALI M++KCG++  A ++F  M  R +VSWT
Sbjct: 168 NNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWT 227

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I   A H +  EA  L+E+ML+AG+ P+ V FV LL++C+    +++GR    S  ++
Sbjct: 228 AIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISE 286

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+   +     ++ M C+   V+EA E   +M  + + I W  +I+     G  K  ES
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGYAQSG-YKDKES 344

Query: 303 I 303
           I
Sbjct: 345 I 345



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 10/309 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+  +LKAC     L  G+ +H  V       D+ V   L+ MY  C G
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC-G 206

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I +  +VF +M+ER+ VSW+A+I   A+     +A +L+ QM  +G+ P+ +T V++L+
Sbjct: 207 EISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLN 266

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C    AL  G+ + S I ++ +   + + NALI M+ KC  V +A ++F  M+ R ++S
Sbjct: 267 SCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS 326

Query: 181 WTSVIAGLAMHGRG-----LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           W+++IAG A  G        E   L E M   GV P+ V F+ +L AC+  G +++GR+ 
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 236 FDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
              + K  F +   ++    + +M  + G + EA +   KM    N + W + +S     
Sbjct: 387 HAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKC 443

Query: 295 GELKLAESI 303
           G+L  AE +
Sbjct: 444 GDLSSAEKV 452



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 166/345 (48%), Gaps = 41/345 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G+SPN  T+  +L +C     LN G+ +H  + +     D+ V N L+ MY  C  
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKC-N 307

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAID----LFRQMQISGVCPDEITM 115
            ++  R++FD MS+RD +SWSAMI GYA+ G    ++ID    L  +M+  GV P+++T 
Sbjct: 308 SVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTF 367

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA----------------- 158
           +++L ACT  GALE G+ + + + K        L  A+ +M+A                 
Sbjct: 368 MSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMAN 427

Query: 159 --------------KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
                         KCGD+  A K+F  M  R +VSW  +IAG A +G  ++   L   M
Sbjct: 428 KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSM 487

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
              G  PD V  + +L AC     +++G+  + +++K   G+         ++ M  + G
Sbjct: 488 KAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK--LGLESDTVVATSLIGMYSKCG 545

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +V EA     KM    + + W  +++     G+   A  + KR++
Sbjct: 546 QVAEARTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRML 589



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 141/297 (47%), Gaps = 10/297 (3%)

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   +AI L   ++  G+  +  T   V+  C      E GK V   +++  V   + 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N+LI+ ++K  DV  A ++FR M  R +V+W+S+IA  A +    +A   FE M +A 
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + P+ + F+ +L AC++  +++KGR+    +K   G+   +     ++ M  + G +  A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKA-MGMETDVAVATALITMYSKCGEISVA 211

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
            E   KM  E N + W  +I A     +L  A  + ++++  G  P +   +V L +   
Sbjct: 212 CEVFHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLNSCN 269

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
                 +  +I   + +RG++     T + + N +    C   S  +++EI++ + +
Sbjct: 270 TPEALNRGRRIHSHISERGLE-----TDMIVANALITMYCKCNSVQEAREIFDRMSK 321


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/504 (43%), Positives = 308/504 (61%), Gaps = 33/504 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
           G  PN++++ F   AC     +  G+ V    +K     ++ V N L+ M+G        
Sbjct: 273 GYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDA 332

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                    G + L +++FDEM ERD VSWS +I GY ++G   
Sbjct: 333 RNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFM 392

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+D F +M  S V P+E TMV+ L+AC++L AL+ GKW+  +I +  +  +  L  +LI
Sbjct: 393 EALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLI 452

Query: 155 DMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           DM+AKCG++D A  +F      R +  W ++I G AMHG+  EA+ +FE+M    V P+ 
Sbjct: 453 DMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNK 512

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V F+ LL+ACSH  +V +G+ YF+ M +D+GI P+IEHYGCMVD+L RSG +K++ E I 
Sbjct: 513 VTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMIL 572

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP+  +  IW  L++AC    +++    I + +   +P H    VLL +IY+   RW +
Sbjct: 573 SMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNE 632

Query: 334 KTKIREVMD-KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              +RE  +     KKIPG + IEL+   +EF+ GD+SH QS+EIY  LDEM  K+K AG
Sbjct: 633 ARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAG 692

Query: 393 YVPTTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           YVP   EVLLD  +EEDKE AL+ HSEKLAIAF L+ T PGTPIRIVKNLRVC DCH AT
Sbjct: 693 YVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQAT 752

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           KFISK+Y+R I+VRDR R+HHFKD
Sbjct: 753 KFISKVYDRVIIVRDRMRYHHFKD 776



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 34/281 (12%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQM-QISGVCPDEITMVT 117
             +    K+FD++ + D   ++ MI  ++    S  D+I +FR + + SG  P+  + V 
Sbjct: 224 ASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVF 283

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS----- 172
              AC +   +  G+ V +   K  ++ +V + NALI MF K G V+ A  +F S     
Sbjct: 284 AFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRD 343

Query: 173 --------------------------MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
                                     M+ R +VSW+++IAG    G  +EA+  F +ML+
Sbjct: 344 FYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 403

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           + V P++   V  L+ACS+   +D+G+     ++ D  I         ++DM  + G + 
Sbjct: 404 SEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRD-NIKMNDRLLASLIDMYAKCGEID 462

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            A     +  ++     W  +I      G+ + A ++ +++
Sbjct: 463 SASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKM 503



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V PN++T    L AC+ +  L+ GK +H  + +     +  +  +L+ MY  C G
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKC-G 459

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I+    VF E   +R    W+AMIGG+A  G   +AI++F +M++  V P+++T + +L
Sbjct: 460 EIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALL 519

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +AC+    ++ GK + E       +N  +     ++D+ ++ G +  + ++  SM     
Sbjct: 520 NACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSM----- 574

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM 204
                +   +A+ G  L A  ++++M
Sbjct: 575 ----PMAPDVAIWGALLNACRIYKDM 596


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 314/475 (66%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   VSP+ +T+  V+K+CA +  L  G+ VHG VL   FG D++VQ  LV +YG C G
Sbjct: 102 MVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKC-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD++ ER  V+W++MI GY + G + +AI LF +M+ +GV PD  T V+VLS
Sbjct: 161 DLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLS 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA  +G WV  +I    ++ +V L  +LI+M+ +CG+V KA ++F SM  R +V+
Sbjct: 221 ACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVA 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G   +G G +AV LF EM   G+ P+ + FV +LSAC+H GLV++GR  F S++
Sbjct: 281 WTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIR 340

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKL 299
            ++ ++P +EH  C+VDML R+G + EA+ FI +++P    P I   ++ AC       L
Sbjct: 341 EEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDL 400

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + + L+  EP + ++YV+LS+IYA   R ++   +R  M ++ +KK  G + +E+D 
Sbjct: 401 GAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQ 460

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F  GDKSH ++  IY  LDE+  K  +AGYVP +  V+ ++ EE++E AL  HSEK
Sbjct: 461 KTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEK 520

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF LLKT  GTPIRIVKNLR+C DCHSA KFIS I +REI+VRD+ RFHHFK
Sbjct: 521 LAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFK 575



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+   Y F+L+A      L L   VH  ++   +G    +   L+++     G I   R+
Sbjct: 10  PHSPAYNFLLQAGP---RLYLLHQVHAHIIVSGYGRSRSLLTKLLNL-ACAAGSISYTRQ 65

Query: 68  VFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +F  +   DS  ++++I   ++    S  ++  + +M +S V P   T  +V+ +C DL 
Sbjct: 66  IFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLS 125

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL+ G+ V   +        V +  AL+ ++ KCGD+  A K+F  +  R+IV+W S+I+
Sbjct: 126 ALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMIS 185

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDF 243
           G   +G   EA+ LF+ M E GV PD   FV +LSAC+H G    G    EY      D 
Sbjct: 186 GYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDL 245

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            ++        +++M  R G V +A E    M  E N + W  +IS     G
Sbjct: 246 NVVLGTS----LINMYIRCGNVSKAREVFDSMK-ERNVVAWTAMISGYGTNG 292


>gi|226507132|ref|NP_001145890.1| uncharacterized protein LOC100279406 [Zea mays]
 gi|219884839|gb|ACL52794.1| unknown [Zea mays]
          Length = 318

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/309 (62%), Positives = 251/309 (81%)

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
           + +F+ M  RTIVSWTSVI  LAM GRG EAVA+FEEM  AGV PDDVAF+G+L+ACSH 
Sbjct: 1   MAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHA 60

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           G+VD+G  YF+SM+  +GI PKIEHYGCMVDM  R+G V+ A EF+ KMP++ NPIIWRT
Sbjct: 61  GMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRT 120

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L++AC A G L+L E+IT+ L+   P HE+NYV+LS++YA   RW++K++IR  M KRG+
Sbjct: 121 LVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGI 180

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
           KK+PG +L+ELD E++EF+ GD+SH Q KEIY M++EM R++++AG++  TSEVLLD++E
Sbjct: 181 KKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDE 240

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           EDKE AL  HSEKLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS +YNREI+VRD
Sbjct: 241 EDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRD 300

Query: 467 RHRFHHFKD 475
           R RFH FK+
Sbjct: 301 RSRFHRFKN 309



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 2/128 (1%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  M ER  VSW+++I   A  G   +A+ +F +M+ +GV PD++  + VL+AC+  G 
Sbjct: 3   VFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGM 62

Query: 128 LEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTSVI 185
           ++ G  + ES      ++  +     ++DMF + G V++A++    M  +   + W +++
Sbjct: 63  VDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLV 122

Query: 186 AGLAMHGR 193
           A    HGR
Sbjct: 123 AACRAHGR 130


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 303/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+P++ TY  VL ACA  G L  GK +H    K     D+   N L++MY S  G
Sbjct: 322 MLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMY-SKAG 380

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD M +RD VSW+ ++G YA      ++   F+QM   GV  ++IT + VL 
Sbjct: 381 SMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLK 440

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC++  AL+ GK + + + K  +   + + NAL+ M+ KCG V+ A+++F  M+ R +V+
Sbjct: 441 ACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVT 500

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I GL  +GRGLEA+  +E M   G+ P+   FV +LSAC  C LV++GR  F  M 
Sbjct: 501 WNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMS 560

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI+P  +HY CMVD+L R+G ++EA + I  +P++ +  +W  L++AC     +++ 
Sbjct: 561 KDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIG 620

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +  +  EP +   YV LS IYA    W    K+R+ M +RG+KK PG + IE+  E
Sbjct: 621 ERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGE 680

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D+SH +++EIY  L+ + ++MK  GYVP T  V+ D+++E KE A+  HSEKL
Sbjct: 681 VHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKL 740

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TPPGTPIRI KNLRVC DCH+ATKFISKI  REI+ RD HRFHHFK+
Sbjct: 741 AIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKN 795



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 3/288 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P+KFT+  +L AC+    LN G+ +H  V++    +D  V N L+ MY  C G
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKC-G 178

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFD M+ RD VSW+ + G YA  G   +++  +  M    V P  IT + VLS
Sbjct: 179 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLS 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK + + I +   +  V +  AL  M+ KCG    A ++F  ++ R +++
Sbjct: 239 ACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIA 298

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G    G+  EA   F  MLE GV PD   +  +LSAC+  G + +G+E      
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAA 358

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            D G++  +     +++M  ++G +K+A +   +MP + + + W TL+
Sbjct: 359 KD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 168/321 (52%), Gaps = 7/321 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   + + Y  +L++C    DL +GK VH  +L+     ++++ NTL+ +Y  C G +  
Sbjct: 23  GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHC-GSVNE 81

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++FD+ S +  VSW+ MI GYA  GL+ +A +LF  MQ   + PD+ T V++LSAC+ 
Sbjct: 82  ARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS 141

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              L  G+ +   + +  +     + NALI M+AKCG V  A ++F +M  R  VSWT++
Sbjct: 142 PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 201

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
               A  G G E++  +  ML+  V P  + ++ +LSAC     ++KG++ +   +++++
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY 261

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
               ++     +  M  + G  K+A E  + +    + I W T+I      G+L+ A   
Sbjct: 262 HSDVRVS--TALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 304 TKRLI--GNEPMHESNYVLLS 322
             R++  G  P   +   +LS
Sbjct: 319 FHRMLEEGVAPDRATYTTVLS 339



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 151/288 (52%), Gaps = 3/288 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V P++ TY  VL AC  +  L  GK +H  +++ ++  D+ V   L  MY  C G
Sbjct: 221 MLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC-G 279

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R+VF+ +S RD ++W+ MI G+   G   +A   F +M   GV PD  T  TVLS
Sbjct: 280 AFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLS 339

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G L  GK + +   K  +   V   NALI+M++K G +  A ++F  M  R +VS
Sbjct: 340 ACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS 399

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT+++   A   + +E+   F++ML+ GV  + + ++ +L ACS+   +  G+E    + 
Sbjct: 400 WTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVV 459

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              G++  +     ++ M  + G V++A    + M +  + + W TLI
Sbjct: 460 KA-GLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLI 505



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 2/198 (1%)

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           D+ + +   G   D    V +L +C     L VGK V   I +  V  +V + N L+ ++
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
           A CG V++A +LF   + +++VSW  +I+G A  G   EA  LF  M +  + PD   FV
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            +LSACS   +++ GRE    +  + G+         ++ M  + G V++A      M  
Sbjct: 134 SILSACSSPAVLNWGREIHVRVM-EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA- 191

Query: 278 EANPIIWRTLISACCARG 295
             + + W TL  A    G
Sbjct: 192 SRDEVSWTTLTGAYAESG 209


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/414 (47%), Positives = 287/414 (69%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I+  R +FD + ERD++ W+ MI GYA+ GL  + + LFRQM  + V P+E+T++ VL
Sbjct: 20  GMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVL 79

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC   GALE G+WV S+IE   +  +V +  +LIDM++KCG ++ A  +F  ++ + +V
Sbjct: 80  SACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVV 139

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W S++ G AMHG   +A+ LF+EM   G  P D+ F+G+L+ACSH GLV +G ++F SM
Sbjct: 140 AWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSM 199

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K+++GI PK+EHYGCMV++L R+G ++EA+E ++ M I+ +P++W TL+ AC   G + L
Sbjct: 200 KDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIAL 259

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E I + L+     +   YVLLS+IYA    WE   ++R +M + G +K PG + IE++N
Sbjct: 260 GEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNN 319

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++EF+ GD  H +S+EIYEML+E+   +K  GY P T  VL D+ +  KE +L  HSEK
Sbjct: 320 KVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHSEK 379

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LA+AF L+ T PGT I+IVKNLRVC DCH+ TK ISKI  R++V+RDR+RFHHF
Sbjct: 380 LALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFHHF 433



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V PN+ T   VL AC   G L  G+ VH  +     G ++ V  +L+ MY  C G
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC-G 121

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF+ +S +D V+W++M+ GYA  G S DA+ LF++M + G  P +IT + VL+
Sbjct: 122 SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLN 181

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC+  G +  G K+  S  ++  +   V     ++++  + G +++A +L ++M   +  
Sbjct: 182 ACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDP 241

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V W +++    +HG     +AL E++ E
Sbjct: 242 VLWGTLLGACRLHGN----IALGEQIAE 265



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
           M  +S+    A+I  +AK G +D+A  LF  +  R  + W  +I G A HG   E + LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            +ML A V P++V  + +LSAC   G ++ GR     ++N+ GI   +     ++DM  +
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN-GIGINVRVGTSLIDMYSK 119

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR--LIGNEP 312
            G +++A    +++    + + W +++      G  + A  + K   +IG +P
Sbjct: 120 CGSLEDARLVFERIS-NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQP 171


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 318/475 (66%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V+P+ +T+  V+K+CA +  L  G+ +HG VL   FG D++VQ  L+  YG C G
Sbjct: 102 MVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKC-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD+M +R  V+W++MI GY + G + +AI LF +M+  GV P+  T V+VLS
Sbjct: 161 VLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLS 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA  +G WV  +     ++ +V L  +LI+M+ +CG+V KA ++F SM  R +V+
Sbjct: 221 ACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVA 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G   +G G +AV LF EM   G+ P+ + FV +LSAC+H GLV++GR  F+SM+
Sbjct: 281 WTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMR 340

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ ++P++EH+ C+VDML R+G + EA+ FI+++  E  P IW  ++ AC       L 
Sbjct: 341 EEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLG 400

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
             + +  + +EP + ++YV+LS+IYA   R ++   +R+ M ++ +KK  G + I+LD +
Sbjct: 401 AQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRK 460

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            Y F  GDKSH ++ EIY  LD++ RK ++AGYV  +  V+ ++ EE++E AL  HSEKL
Sbjct: 461 TYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKL 520

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LLKT  GT IRIVKNLR+C DCHSA K+IS I NREI+VRD+ RFHHFK+
Sbjct: 521 AIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKN 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 13/292 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+   Y  +L+A      L L   VH  V+   +G    +   L+++     G I   R+
Sbjct: 10  PHSPAYNLLLQAGP---RLKLLHQVHAHVIVSGYGCSRFLLTKLLNL-ACAAGSISYTRQ 65

Query: 68  VFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +F  +   DS  ++++I   ++    S  ++  + +M +S V P   T  +V+ +C DL 
Sbjct: 66  IFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLV 125

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL  G+ +   +        V +  AL+  + KCG +  A K+F  M  R++V+W S+I+
Sbjct: 126 ALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMIS 185

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDF 243
           G   +G   EA+ LF+ M E GV P+   FV +LSAC+H G    G    EY      D 
Sbjct: 186 GYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDL 245

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            ++        +++M  R G V +A E    M  E N + W  +IS     G
Sbjct: 246 NVVLGTS----LINMYTRCGNVSKAREVFDSMK-ERNVVAWTAMISGYGTNG 292


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 315/476 (66%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   +S + +T+  V+K+ A +   ++G+++H  V    +G D +VQ  LV  Y    G
Sbjct: 109 MLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAK-SG 167

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + RKVFD+M E+  V+W++MI GY + G   +A++LF  MQ  GV PD  T V++LS
Sbjct: 168 HVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLS 227

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +GA+ +G WV  +I +   + +V L  AL++M+++CG+V KA ++F SM  + IV+
Sbjct: 228 ACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVA 287

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G  MHG G +A+ LF EM   G  P++V FV +LSAC+H GLVD+GR+ F +MK
Sbjct: 288 WTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMK 347

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKL 299
            ++G++P +EH  CMVDML R+G + EA++FI+   P E  P +W  ++ AC       L
Sbjct: 348 QEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDL 407

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + + L+  EP +  +YV+LS+IYA   R ++  KIR +M +  +KK  G + I++D+
Sbjct: 408 GVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDH 467

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++Y F  GDKSH ++ +IY  LDE+  + ++AGY+P +  V+ ++ EE++E AL  HSEK
Sbjct: 468 KVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEK 527

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LLKT  G  IRIVKNLR+C DCH+A K+IS I NREI VRDR RFHHFKD
Sbjct: 528 LAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKD 583


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 305/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+ G+ PN  T+  +L  C     L LGK VH  ++K     D+HV N LV M+ +C G
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC-G 563

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +F++M +RD VSW+ +I G+ + G +  A D F+ MQ SG+ PD+IT   +L+
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    AL  G+ + + I +   +  V +   LI M+ KCG ++ A ++F  +  + + S
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HGRG EA+ LF +M + GV PD + FVG LSAC+H GL+++G  +F SMK
Sbjct: 684 WTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK 743

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +F I P++EHYGCMVD+  R+G + EA EFI KM +E +  +W  L+ AC     ++LA
Sbjct: 744 -EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELA 802

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++ +  +P     +V+LS+IYA    W++  K+R+VM  RG+ K PG + IE+D +
Sbjct: 803 EKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGK 862

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   DK+H Q++EI+  L+ +  +M++ GYVP T  VL D+ + +KE AL  HSE+L
Sbjct: 863 VHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERL 922

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI + LLKTPP TPI I KNLRVC DCH+ATKFISKI  R+I+ RD +RFHHFKD
Sbjct: 923 AITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 172/291 (59%), Gaps = 5/291 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P+K T+  +L ACA   +++ G+ ++  +LK  +  D+ V   L++M+  C G
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKC-G 260

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    KVFD +  RD V+W++MI G AR G    A +LF++M+  GV PD++  V++L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    ALE GK V + +++   +  + +  A++ M+ KCG ++ AL++F  + GR +VS
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           WT++IAG A HGR  EA   F +M+E+G+ P+ V F+ +L ACS    + +G++  D  +
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  +G   ++     ++ M  + G +K+AH   +K+  + N + W  +I+A
Sbjct: 441 EAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITA 488



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 161/300 (53%), Gaps = 3/300 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ PN+ T+  +L AC+    L  G+ +   +++  +G D  V+  L+ MY  C G
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC-G 462

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF+++S+++ V+W+AMI  Y +     +A+  F+ +   G+ P+  T  ++L+
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C    +LE+GKWV   I K  +   + + NAL+ MF  CGD+  A  LF  M  R +VS
Sbjct: 523 VCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG   HG+   A   F+ M E+G+ PD + F GLL+AC+    + +GR    ++ 
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRR-LHALI 641

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +      +     ++ M  + G +++AH+   K+P + N   W ++I+     G  K A
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEA 700



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 167/335 (49%), Gaps = 44/335 (13%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  +L+ C    +L  G+ ++  + K     DI + NTL++MY  C   I   +++FD+
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTIS-AKQIFDD 170

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M E+D  SW+ ++GGY + GL  +A  L  QM    V PD+ T V++L+AC D   ++ G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + + + I K   +  + +  ALI+M  KCGD+  A K+F ++  R +V+WTS+I GLA H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-------------------------- 225
           GR  +A  LF+ M E GV PD VAFV LL AC+H                          
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 226 ---------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275
                    CG ++   E FD +K        +  +  M+    + GR+ EA  F  KM 
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKG-----RNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 276 --PIEANPIIWRTLISACCARGELKLAESITKRLI 308
              IE N + + +++ AC +   LK  + I   +I
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 156/301 (51%), Gaps = 5/301 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+K  +  +L+AC     L  GK VH  + +  +  +I+V   ++ MY  C G
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKC-G 361

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VFD +  R+ VSW+AMI G+A+ G   +A   F +M  SG+ P+ +T +++L 
Sbjct: 362 SMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   AL+ G+ ++  I +        +  AL+ M+AKCG +  A ++F  ++ + +V+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W ++I     H +   A+A F+ +L+ G+ P+   F  +L+ C     ++ G+  +F  M
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K   G+   +     +V M    G +  A      MP + + + W T+I+     G+ ++
Sbjct: 542 KA--GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQV 598

Query: 300 A 300
           A
Sbjct: 599 A 599



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +D+   +A++   ++ G   +A+ +  ++  S +     T   +L  C     L  G+ +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            + I+K  V   + + N LI+M+AKCG+   A ++F  M  + + SW  ++ G   HG  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA  L E+M++  V PD   FV +L+AC+    VDKGRE ++ +    G    +     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +++M  + G + +A +    +P   + + W ++I+     G  K A ++ +R+
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQRM 303


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/498 (42%), Positives = 305/498 (61%), Gaps = 32/498 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+      VL AC   G+L+ G+++H  V    +  D H+Q  L++MY +C G ++L 
Sbjct: 218 MKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANC-GAMDLA 276

Query: 66  RK-------------------------------VFDEMSERDSVSWSAMIGGYARLGLST 94
           RK                               +FD+M ERD V WSAMI GYA      
Sbjct: 277 RKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQ 336

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+ LF +M      PD+ITM++V+SAC+ +GAL    W+ +++++    R++ + NALI
Sbjct: 337 EALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALI 396

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+AKCG++ KA ++F +M  + ++SW+S+I   AMHG    A+ LF  M E  + P+ V
Sbjct: 397 DMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV 456

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F+G+L AC H GLV++G + F SM N+ GI P  EHYGCMVD+ CR+  +++A E I+ 
Sbjct: 457 TFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIET 516

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP   N IIW +L+SAC   GE +L E   KRL+  EP H+   V+LS+IYAK  RW   
Sbjct: 517 MPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDV 576

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
             IR+ M  +G+ K   S+ IE++N+++ F+  D+ H QS EIYE LDE+  K+K  GY 
Sbjct: 577 GLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYK 636

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P+TS +L+D+ EEDK++ +  HSEKLA+ + L+     + IRIVKNLR+C DCHS  K +
Sbjct: 637 PSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLV 696

Query: 455 SKIYNREIVVRDRHRFHH 472
           SK+Y  EIVVRDR RFHH
Sbjct: 697 SKVYQIEIVVRDRTRFHH 714



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 163/333 (48%), Gaps = 40/333 (12%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++F++P +LKA + +   N G  +HG   K  F DD  +Q  L+ MY SC   ++  R +
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMD-ARLL 178

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M   D+V+W+ +I GY + G   DA+ LF  M+ S + PD + + TVLSAC   G L
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNL 238

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL------------------- 169
             G+ +  F++         L  ALI+M+A CG +D A K+                   
Sbjct: 239 SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGY 298

Query: 170 ------------FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                       F  M  R +V W+++I+G A   +  EA+ LF+EML+    PD +  +
Sbjct: 299 AKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITML 358

Query: 218 GLLSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            ++SACSH G + +      Y D  ++ FG    +     ++DM  + G + +A E  + 
Sbjct: 359 SVISACSHVGALAQANWIHTYVD--RSGFGRALSVN--NALIDMYAKCGNLVKAREVFEN 414

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRL 307
           MP   N I W ++I+A    G    A  + +R+
Sbjct: 415 MP-RKNVISWSSMINAFAMHGNADSAIKLFRRM 446



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 15/254 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    P++ T   V+ AC+ +G L     +H  V +  FG  + V N L+ MY  C G
Sbjct: 345 MLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKC-G 403

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VF+ M  ++ +SWS+MI  +A  G +  AI LFR+M+   + P+ +T + VL 
Sbjct: 404 NLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLY 463

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC   G +E G K   S I +  ++ +      ++D++ +   + KA++L  +M     +
Sbjct: 464 ACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNV 523

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           + W S+++   +HG         + +LE  + PD    + +LS      +  K + +   
Sbjct: 524 IIWGSLMSACQVHGEAELGEFAAKRLLE--LEPDHDGALVVLS-----NIYAKEKRW--- 573

Query: 239 MKNDFGIIPKIEHY 252
             ND G+I K   Y
Sbjct: 574 --NDVGLIRKSMSY 585


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/511 (43%), Positives = 322/511 (63%), Gaps = 39/511 (7%)

Query: 1   MLEYG--VSPNKFTYPFVLKACAGIGDLN-LGKSVHGAVLKFQFGDDIHVQNTLVHMYGS 57
           ML +G   S +K+T+ FV  AC+    L   G++VHG V+K  +  DI V N+LV+MY  
Sbjct: 145 MLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSI 204

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM----------QISG 107
               ++  ++VFDEM +RD ++W++++ GYA  G    A +LF  M           ++G
Sbjct: 205 FSRMVD-AKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAG 263

Query: 108 ----------------------VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                                 V P+E  +V++LSAC  LGAL+ GKW+  +I+K  +  
Sbjct: 264 YVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILL 323

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S  +  ALIDM+AKCG +D A ++F  ++ R +++WTS+I+GL+MHG G E +  F EML
Sbjct: 324 SSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEML 383

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G  PDD+  +G+L+ CSH GLV++G   F  M   +GI+PK+EHYGC++D+L R+GR+
Sbjct: 384 AEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRL 443

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEP-MHESNYVLLSHI 324
           + A E I+ MP+E + + WR L+SAC   G++ L E I   +    P  H   YVLLS++
Sbjct: 444 ESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNL 503

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEM 384
           YA + +WE  TK+R+ M +RG +  PG + IE+D  ++EF+  DK H +  EI + L+E+
Sbjct: 504 YASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEV 563

Query: 385 GRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
            R++  + GYVP+T +VL D+NEEDKE A++ HSEKLA+AF LL T  GT IRI KNLR 
Sbjct: 564 LRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRT 622

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           C DCHSA K IS ++NREIVVRDR RFH F+
Sbjct: 623 CEDCHSAMKTISLVFNREIVVRDRSRFHTFR 653



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 141/327 (43%), Gaps = 48/327 (14%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T+  +LK    +  +   K +H  V+      +  +   L+H Y  C   +   R 
Sbjct: 53  PSHSTFVQLLKKRPSLTQI---KQIHAQVVTHGLAQNTSLLGPLIHSYIGCRN-LSFARI 108

Query: 68  VFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTD 124
           VFD+  S   ++ W+ MI  Y++   S +++ LF QM   G     D+ T   V +AC+ 
Sbjct: 109 VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSR 168

Query: 125 LGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
              L   G+ V   + K      + + N+L++M++    +  A ++F  M  R +++WTS
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228

Query: 184 VIAGLAMHGRGLEAVALFEEM----------LEAG----------------------VPP 211
           V+ G AM G  + A  LF+ M          + AG                      V P
Sbjct: 229 VVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKP 288

Query: 212 DDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           ++   V +LSAC+H G +D+G+    Y D  KN   +   I     ++DM  + GR+  A
Sbjct: 289 NEAVLVSILSACAHLGALDQGKWIHVYID--KNRILLSSNIS--TALIDMYAKCGRIDCA 344

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
                 +  + + + W ++IS     G
Sbjct: 345 RRVFDGLH-KRDLLTWTSMISGLSMHG 370


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/505 (43%), Positives = 312/505 (61%), Gaps = 34/505 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
           G+  + FT PFVLK+CA +  + +G+ VHG  L+     D +V  +L+ MY  C      
Sbjct: 176 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 235

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                   EG I +   +F+ M  R+ VSW+AMI GY + G + 
Sbjct: 236 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 295

Query: 95  DAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
            A+ LF +M   G  + P+ +T+V+VL AC    ALE G+ +  F     ++ +  +  A
Sbjct: 296 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 355

Query: 153 LIDMFAKCGDVDKALKLFR--SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           L  M+AKC  + +A   F   + NG+ +++W ++I   A HG G+EAV++FE ML AGV 
Sbjct: 356 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 415

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD V F+GLLS CSH GL+D G  +F+ M     + P++EHY C+VD+L R+GR+ EA E
Sbjct: 416 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 475

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I +MP++A P +W  L++AC +   L++AE   +RL   EP +  NYVLLS++YA+   
Sbjct: 476 LISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 535

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE+  K+R ++  +GMKK PG + IE++ + + F+  DKSH Q+KEIY+ L+ +  K+K 
Sbjct: 536 WEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKM 595

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY+P TS VL DI+EE+KE  L  HSEKLAIAF LL T PG  +R+ KNLR+C DCH+A
Sbjct: 596 AGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAA 655

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISKIY REI+VRD +RFH FKD
Sbjct: 656 TKFISKIYEREIIVRDLNRFHCFKD 680



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 39/325 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +Y  + +       + LG+  H  ++      +  +   +V MY S  G ++    
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYAS-SGDLDSAVV 133

Query: 68  VFDEMSERDSVSWSAMIGGYARLG---LSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           VFD +    S+ ++++I  Y R G        ++ + +M   G+  D  T+  VL +C D
Sbjct: 134 VFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCAD 193

Query: 125 LGALEVGKWVE----------------SFIE---------------KQMVNRSVGLCNAL 153
           L  + +G+ V                 S I+                +M+ R +   NAL
Sbjct: 194 LSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNAL 253

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--VPP 211
           I  + K G++  A  LF  M  R IVSWT++I+G   +G   +A+ LF+EML+ G  + P
Sbjct: 254 IAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKP 313

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V  V +L AC+    +++GR   D   N  G+         +  M  +   + EA   
Sbjct: 314 NWVTIVSVLPACAQSAALERGRRIHD-FANGIGLHLNSSVQTALAGMYAKCYSLVEARCC 372

Query: 272 IQKMPIEA-NPIIWRTLISACCARG 295
              +     N I W T+I+A  + G
Sbjct: 373 FDMIAQNGKNLIAWNTMITAYASHG 397



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 15/206 (7%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           P   +   +    T    +++G+   + I    +  +  L   ++ M+A  GD+D A+ +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE---EMLEAGVPPDDVAFVGLLSACSHC 226
           F  ++  + + + S+I     HG         E    M   G+  D+     +L +C+  
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 227 GLVDKGREYFDS-----MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
             V  GR          ++ DF +         ++DM  + G + +A +   KM I  + 
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYV------GASLIDMYVKCGVIGDARKLFDKM-IVRDM 247

Query: 282 IIWRTLISACCARGELKLAESITKRL 307
             W  LI+     GE+ +AE + +R+
Sbjct: 248 ASWNALIAGYMKEGEIGVAEDLFERM 273


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/477 (43%), Positives = 304/477 (63%), Gaps = 4/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCE 59
           ML   + P+ +T+  V+KACA +  L +G  VH  V    +  D  VQ  L+  Y  SC 
Sbjct: 99  MLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCT 158

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
               + RKVFDEM +R  V+W++MI GY + GL+ +A+++F +M+ S V PD  T V+VL
Sbjct: 159 P--RVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVL 216

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC+ LG+L+ G W+   I    +  +V L  +L++MF++CGDV +A  +F SM    +V
Sbjct: 217 SACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVV 276

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            WT++I+G  MHG G+EA+ +F  M   GV P+ V FV +LSAC+H GL+D+GR  F SM
Sbjct: 277 LWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASM 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELK 298
           K ++G++P +EH+ CMVDM  R G + EA++F++ +   E  P +W  ++ AC       
Sbjct: 337 KQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFD 396

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L   + + LI  EP +  +YVLLS++YA   R ++   +R VM +RG+KK  G + I++D
Sbjct: 397 LGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVD 456

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N  Y F  GDKSH ++ EIY  LDE+  + K AGY P     + ++  E++E AL  HSE
Sbjct: 457 NRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSE 516

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+KT  G  +RIVKNLR+C DCHSA KFIS + NREI+VRD+ RFHHF++
Sbjct: 517 KLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFRE 573



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 3/234 (1%)

Query: 57  SCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           SC  G I   R++F  +S+ DS  ++++I   ++ G S DA+  +R+M +S + P   T 
Sbjct: 52  SCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTF 111

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +V+ AC DL  L +G  V S +          +  ALI  +AK      A K+F  M  
Sbjct: 112 TSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQ 171

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R+IV+W S+I+G   +G   EAV +F +M E+ V PD   FV +LSACS  G +D G   
Sbjct: 172 RSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWL 231

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            D +    GI   +     +V+M  R G V  A      M IE N ++W  +IS
Sbjct: 232 HDCIVGS-GITMNVVLATSLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMIS 283


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 304/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G   + ++ P V++AC  + DL  G+ +H   LK        V  TLV MY  C+ 
Sbjct: 142 LLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKV 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++F +M +RD  +W+ MIG  A  G+  +++  F +M+  G+ PD++ +VTV+ 
Sbjct: 202 -VEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVY 260

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   K + ++I     +  V L  A+IDM+AKCG V+ A  +F  M  R +++
Sbjct: 261 ACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVIT 320

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IA    HG+G +A+ LF  ML +G+ P+ + FV LL ACSH GL+++G+ +F SM 
Sbjct: 321 WSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMW 380

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +++G+ P ++HY CMVD+L R+GR+ EA E I+ MP+E + ++W  L+ AC     L LA
Sbjct: 381 DEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLA 440

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + + L+  +     +YVLLS+IYA   +WE   K R++M K G++KIPG T IE+  +
Sbjct: 441 ERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEK 500

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y+F  GDK+H +S EIY+ML  +G K++ AGY P T++VL D++EE K+  L  HSEKL
Sbjct: 501 LYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKL 560

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL  P G PIRI KNLRVC DCH+  KF+S I  + I+VRD  RFHHFK+
Sbjct: 561 AIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKE 615



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 3/267 (1%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           + VH  +       ++ V N L++MY    G +E  +++FD MS+R   SWS ++GGYA+
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVE-RGALEDAQELFDGMSKRHPYSWSVIVGGYAK 128

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           +G       +FR++  SG   D+ +   V+ AC DL  L+ G+ +     K  ++    +
Sbjct: 129 VGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFV 188

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           C  L+DM+A+C  V+ A ++F  M  R + +WT +I  LA  G  +E++  F+ M   G+
Sbjct: 189 CATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGI 248

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD VA V ++ AC+  G ++K +    +  N  G    +     M+DM  + G V+ A 
Sbjct: 249 VPDKVALVTVVYACAKLGAMNKAKA-IHAYINGTGYSLDVILGTAMIDMYAKCGSVESAR 307

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
               +M +  N I W  +I+A    G+
Sbjct: 308 WIFDRMQVR-NVITWSAMIAAYGYHGQ 333


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/474 (44%), Positives = 309/474 (65%), Gaps = 3/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G +PN+FT+  VL +C       LG+ +H  V+K  F   I V ++L+ MY    G
Sbjct: 102 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R+VFD + ERD VS +A+I GYA+LGL  +A+DLFR++Q  G+  + +T  +VL+
Sbjct: 161 KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L AL+ G+ V S + +  +   V L N+LIDM++KCG +  + ++F SM  RT++S
Sbjct: 221 ALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W +++ G + HG G EAV LF+ M E   V PD V F+ +LS CSH G+ D+G E F  M
Sbjct: 281 WNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEM 340

Query: 240 KNDF-GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            N   G  P+IEHYGC+VD+  R+GRV+EA EFI+KMP E    IW +L+ AC     + 
Sbjct: 341 VNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVH 400

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + E + +RL+  E  +  NYV+LS++YA   RW+    +RE+M ++ + K PG + IELD
Sbjct: 401 IGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELD 460

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++ F   D+SH + +E++  + E+  K+K+AGYVP  S VL D+++E KE  L  HSE
Sbjct: 461 QTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSE 520

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           KLA+AF L+ TP GTP+RI+KNLR+C DCH+  KF+S++Y RE+ +RD++RFHH
Sbjct: 521 KLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHH 574



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 9/286 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  VL  C     +  G+ VH  ++K  +   ++++  L+ +Y  C   +   R+V DEM
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC-LGDARRVLDEM 71

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ER+ VSW+AMI GY++ G +++A+ LF +M +SG  P+E T  TVL++CT     ++G+
Sbjct: 72  PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 131

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S + K      + + ++L+DM+AK G + +A ++F  +  R +VS T++I+G A  G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM---KNDFGIIPKI 249
              EA+ LF  +   G+  + V +  +L+A S    +D GR+    +   K  F ++ + 
Sbjct: 192 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ- 250

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                ++DM  + G +  +      MP E   I W  ++      G
Sbjct: 251 ---NSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHG 292


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/493 (43%), Positives = 311/493 (63%), Gaps = 19/493 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK------------FQFGDDIHVQ 48
           M+ YG  PN  T   +L ACA +G L+ G   H   LK               G+D+ V 
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--Q 104
           N L+ MY  C    +  R +F+ +   ER+ V+W+ MIGGYA+ G S DA+ LF +M  +
Sbjct: 446 NALIDMYSKCRS-FKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISK 504

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGD 162
              V P+  T+  +L AC  L +L +GK + +++ +     S    + N LIDM++KCGD
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGD 564

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           VD A  +F SM  R  VSWTS+++G  MHGRG EA+ +F++M +AG  PDD++F+ LL A
Sbjct: 565 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA 624

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH G+VD+G +YFD M++D+G+I   +HY C++D+L RSGR+ +A + IQ+MP+E +  
Sbjct: 625 CSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAA 684

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           IW  L+SAC     ++LAE    +L+  +  ++ +Y L+S+IYA   RW+   +IR++M 
Sbjct: 685 IWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMK 744

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
           K G+KK PG + ++       F  GD+SH  S EIY +L+ +  ++K  GYVP T+  L 
Sbjct: 745 KSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALH 804

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           D+++E+K + L +HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EI
Sbjct: 805 DVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEI 864

Query: 463 VVRDRHRFHHFKD 475
           +VRD  RFHHFK+
Sbjct: 865 IVRDSSRFHHFKN 877



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 197/493 (39%), Gaps = 117/493 (23%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+ FT P+ LKAC  +     G + HG +    F  ++ V N LV MY S  G
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMY-SRSG 198

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQM------QISGVCPD 111
            +E    VFDE++ +   D +SW++++  + +      A+DLF +M      + +    D
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L AL   K + S+  +        +CNALID +AKCG +  A+ +F 
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   W++VIAG A  G G E
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY--------------------- 235
           A+  F++M+  G  P+ V  + LLSAC+  G + +G E                      
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438

Query: 236 -------------------FDSMKNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFI 272
                              F + +  F  IP+ E     +  M+    + G   +A +  
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLF 498

Query: 273 QKM-----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL---LSHI 324
            +M      +  N      ++ AC     L++ + I   +  +     S Y +   L  +
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDM 558

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI--YEFVCGDKSHHQSKEIYEMLD 382
           Y+K    +    + + M KR              NE+     + G   H + KE  ++ D
Sbjct: 559 YSKCGDVDTARNVFDSMPKR--------------NEVSWTSMMSGYGMHGRGKEALDIFD 604

Query: 383 EMGRKMKKAGYVP 395
               KM+KAG+VP
Sbjct: 605 ----KMQKAGFVP 613



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 45/316 (14%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           +V  Y +C G       V + +    +V W+ ++  +   G    AI +  +M  +G  P
Sbjct: 89  VVASYLAC-GATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKP 147

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+   L AC +L +   G      I       +V +CNAL+ M+++ G ++ A  +F
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVF 207

Query: 171 RSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEMLE------AGVPPDDVAFVGLLS 221
             +  + I   +SW S++A          A+ LF EM             D ++ V +L 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILP 267

Query: 222 ACSHCGLVDKGREYFD-------------------------SMKNDFGIIPKIE-----H 251
           AC+    + + +E                            SMK+   +   +E      
Sbjct: 268 ACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVS 327

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANP---IIWRTLISACCARGELKLAESITKRLI 308
           +  MV    +SG+   A E  + M  E  P   I W  +I+    RG  + A    +++I
Sbjct: 328 WNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387

Query: 309 --GNEPMHESNYVLLS 322
             G+EP   +   LLS
Sbjct: 388 LYGSEPNSVTIISLLS 403


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/506 (41%), Positives = 321/506 (63%), Gaps = 32/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V  N +T+PF+LKAC+ +      + +H  ++K  FG +I+  N+L+++Y S  G
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVY-SKSG 167

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR------------------------------- 89
            I+  R +FD++ +RD+VSW++MI GY +                               
Sbjct: 168 DIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVG 227

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +A++LF +MQ +G+  D + +V+ L AC DLG L+ GKW+ ++I+K  +     L
Sbjct: 228 AGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL 287

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              LIDM+AKCGD+++A+++FR M  + +  WT++I+G A+HGRG EA+  F +M  AGV
Sbjct: 288 GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGV 347

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ + F G+L+ACSH GLV + +  F+SM+   G  P IEHYGCMVD+L R+G +KEA 
Sbjct: 348 EPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 407

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E I+ MP++ N  IW  L++AC   G L+L + I K LI  +P H   Y+ L+ I+A   
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 467

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W +  ++R  M ++G+ K+PG ++I ++   +EF+ GD+SH Q KEI  ML+++  +++
Sbjct: 468 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 527

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           + GY P   ++LLD+ +++KE A++ HSEKLA+ F L+ T PG  IRIVKNLRVC DCH+
Sbjct: 528 EEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHT 587

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             K ISK+Y REI++RDR RFH FKD
Sbjct: 588 VIKLISKVYAREILMRDRTRFHLFKD 613



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 43/333 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+ C+ + +L   + +HG +LK     D+I     L        G +   R VFD +  
Sbjct: 24  LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            ++  W+ MI GY+      +A+ L+  M    V  +  T   +L AC+ + A E  + +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 135 ESFIEK-------------------------------QMVNRSVGLCNALIDMFAKCGDV 163
            + I K                               Q+  R     N++ID + KCG++
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A ++F  M  R I+SWTS+I+G    G+  EA+ LF  M  AG+  D+VA V  L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 224 SHCGLVDKGREYFDSM-KNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANP 281
           +  G++D+G+     + K++  I P +   GC ++DM  + G ++EA E  +KM  E   
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGV 316

Query: 282 IIWRTLIS--ACCARGELKLAESITKRLIGNEP 312
            +W  +IS  A   RG   L   +  +  G EP
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 349


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/474 (44%), Positives = 309/474 (65%), Gaps = 3/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML  G +PN+FT+  VL +C       LG+ +H  V+K  F   I V ++L+ MY    G
Sbjct: 569  MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA-G 627

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             I   R+VFD + ERD VS +A+I GYA+LGL  +A+DLFR++Q  G+  + +T  +VL+
Sbjct: 628  KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 687

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A + L AL+ G+ V S + +  +   V L N+LIDM++KCG +  + ++F SM  RT++S
Sbjct: 688  ALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS 747

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W +++ G + HG G EAV LF+ M E   V PD V F+ +LS CSH G+ D+G E F  M
Sbjct: 748  WNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEM 807

Query: 240  KNDF-GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             N   G  P+IEHYGC+VD+  R+GRV+EA EFI+KMP E    IW +L+ AC     + 
Sbjct: 808  VNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVH 867

Query: 299  LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
            + E + +RL+  E  +  NYV+LS++YA   RW+    +RE+M ++ + K PG + IELD
Sbjct: 868  IGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELD 927

Query: 359  NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
              ++ F   D+SH + +E++  + E+  K+K+AGYVP  S VL D+++E KE  L  HSE
Sbjct: 928  QTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSE 987

Query: 419  KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
            KLA+AF L+ TP GTP+RI+KNLR+C DCH+  KF+S++Y RE+ +RD++RFHH
Sbjct: 988  KLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHH 1041



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 9/286 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  VL  C     +  G+ VH  ++K  +   ++++  L+ +Y  C   +   R+V DEM
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC-LGDARRVLDEM 538

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ER+ VSW+AMI GY++ G +++A+ LF +M +SG  P+E T  TVL++CT     ++G+
Sbjct: 539 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S + K      + + ++L+DM+AK G + +A ++F  +  R +VS T++I+G A  G
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 658

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM---KNDFGIIPKI 249
              EA+ LF  +   G+  + V +  +L+A S    +D GR+    +   K  F ++ + 
Sbjct: 659 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ- 717

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                ++DM  + G +  +      MP E   I W  ++      G
Sbjct: 718 ---NSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHG 759


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/498 (41%), Positives = 308/498 (61%), Gaps = 34/498 (6%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------------ 58
           FT+PFVLK+   +  + +GK VHG +L+     D++V  +L+ +YG C            
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194

Query: 59  ------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
                              G I+    +F+ M  R+ VSW+ MI GY++ GL+  A+ LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254

Query: 101 RQM--QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
            +M  + SGV P+ +T+++VL AC  L  LE G+ +     +  +N +  +  AL  M+A
Sbjct: 255 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 314

Query: 159 KCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           KCG +  A   F  +N   + +++W ++I   A +G GL+AV+ F EM++AG+ PDD+ F
Sbjct: 315 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 374

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            GLLS CSH GLVD G +YF+ M   + I P++EHY C+ D+L R+GR+ EA + + +MP
Sbjct: 375 TGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMP 434

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336
           + A P IW +L++AC     L++AE+  ++L   EP +  NYVLLS++YA+  RW++  K
Sbjct: 435 MPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDK 494

Query: 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396
           +R ++  +G KK PG + IE++ + + F+ GD SH Q KEIY  L+ +  KMK AGY P 
Sbjct: 495 LRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPD 554

Query: 397 TSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISK 456
           TS VL DI+EE+KE  L  HSEKLA+AF +L TP  T +R+ KNLR+C DCH+A  FIS+
Sbjct: 555 TSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISE 614

Query: 457 IYNREIVVRDRHRFHHFK 474
           IY RE++VRD +RFHHFK
Sbjct: 615 IYGREVIVRDINRFHHFK 632



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  T   VL ACA +  L  G+ +H    +     +  V   L  MY  C G +  
Sbjct: 263 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKC-GSLVD 321

Query: 65  GRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
            R  FD++  +E++ ++W+ MI  YA  G    A+  FR+M  +G+ PD+IT   +LS C
Sbjct: 322 ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGC 381

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM---NGRTI 178
           +  G ++VG K+         +N  V     + D+  + G + +A KL   M    G +I
Sbjct: 382 SHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSI 441

Query: 179 VSWTSVIAGLAMHGRGLE 196
             W S++A    H R LE
Sbjct: 442 --WGSLLAACRKH-RNLE 456



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 45/285 (15%)

Query: 62  IELGRKVFDEMSER----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           ++LG +V   M  R     ++  S M+  YA  G    ++ +F  +       D  T   
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIG------DYFTFPF 139

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--------------- 162
           VL +  +L ++ +GK V   I +  +   + +  +LI ++ KCG+               
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 163 ----------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML- 205
                           +D AL +F  M  R IVSWT++I+G +  G   +A++LF+EM+ 
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 206 -EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
            ++GV P+ V  + +L AC+    +++GR+  + +    G+         +  M  + G 
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGS 318

Query: 265 VKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESITKRLI 308
           + +A     K+   E N I W T+I+A  + G    A S  + +I
Sbjct: 319 LVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMI 363


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/513 (42%), Positives = 310/513 (60%), Gaps = 43/513 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + + PN FT   +LKAC     L+  ++VH   +KF     ++V   LV  Y    G
Sbjct: 112 MLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYAR-GG 166

Query: 61  GIELGRKVFDEMSER-------------------------------DSVSWSAMIGGYAR 89
            +   +K+FD M ER                               D V W+ MI GYA+
Sbjct: 167 DVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQ 226

Query: 90  LGLSTDAIDLFRQMQISG-------VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
            G   +A+  FR+M +         V P+EIT+V VLS+C  +GALE GKWV S++E   
Sbjct: 227 HGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNG 286

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +  +V +  AL+DM+ KCG ++ A K+F  M G+ +V+W S+I G  +HG   EA+ LF 
Sbjct: 287 IKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFH 346

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           EM   GV P D+ FV +L+AC+H GLV KG E FDSMK+ +G+ PK+EHYGCMV++L R+
Sbjct: 347 EMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRA 406

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           GR++EA++ ++ M +E +P++W TL+ AC     + L E I + L+ N       YVLLS
Sbjct: 407 GRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLS 466

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           ++YA    W    K+R +M   G++K PG + IE+ N ++EFV GD+ H +SK+IY ML+
Sbjct: 467 NMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLE 526

Query: 383 EMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           +M   +K+  Y P T  VL DI E++KE +L  HSEKLA+AF L+ T PG  I+IVKNLR
Sbjct: 527 KMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLR 586

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCH+  K +SKI  R+I++RDR+RFHHF++
Sbjct: 587 VCLDCHAVMKIMSKISGRKIIMRDRNRFHHFEN 619



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 45/295 (15%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H A+L+        +   L   Y S  G +     +F      +   W+ +I  +A   
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASL-GHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L   A+  + QM    + P+  T+ ++L ACT    L   + V S   K  ++  + +  
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVST 156

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM------- 204
            L+D +A+ GDV  A KLF +M  R++VS+T+++   A HG   EA  LFE M       
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 205 --------LEAGVP-----------------------PDDVAFVGLLSACSHCGLVDKGR 233
                    + G P                       P+++  V +LS+C   G ++ G+
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                ++N+ GI   +     +VDM C+ G +++A +    M  + + + W ++I
Sbjct: 277 WVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK-DVVAWNSMI 329


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/505 (43%), Positives = 312/505 (61%), Gaps = 34/505 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
           G+  + FT PFVLK+CA +  + +G+ VHG  L+     D +V  +L+ MY  C      
Sbjct: 102 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 161

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                   EG I +   +F+ M  R+ VSW+AMI GY + G + 
Sbjct: 162 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 221

Query: 95  DAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
            A+ LF +M   G  + P+ +T+V+VL AC    ALE G+ +  F     ++ +  +  A
Sbjct: 222 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 281

Query: 153 LIDMFAKCGDVDKALKLFR--SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           L  M+AKC  + +A   F   + NG+ +++W ++I   A HG G+EAV++FE ML AGV 
Sbjct: 282 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD V F+GLLS CSH GL+D G  +F+ M     + P++EHY C+VD+L R+GR+ EA E
Sbjct: 342 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 401

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I +MP++A P +W  L++AC +   L++AE   +RL   EP +  NYVLLS++YA+   
Sbjct: 402 LISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 461

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE+  K+R ++  +GMKK PG + IE++ + + F+  DKSH Q+KEIY+ L+ +  K+K 
Sbjct: 462 WEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKM 521

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AGY+P TS VL DI+EE+KE  L  HSEKLAIAF LL T PG  +R+ KNLR+C DCH+A
Sbjct: 522 AGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAA 581

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
           TKFISKIY REI+VRD +RFH FKD
Sbjct: 582 TKFISKIYEREIIVRDLNRFHCFKD 606


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 312/506 (61%), Gaps = 34/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  G+ P   T    L AC G   L+LG+++H    K     D +V   L+ MY     
Sbjct: 113 MLSEGLLPTAHTLSASLPACRG---LSLGRALHAYAFKLALSGDSYVATALLSMYARAGD 169

Query: 57  -----------------------SCE---GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C    G ++  R++FD +  +D + W+AMI GY + 
Sbjct: 170 AAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQH 229

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK-QMVNRSVGL 149
           G   +A+ LFR+M  S   PDE+T+V VLSA   LG +E GKW+ S+++  + V  +V +
Sbjct: 230 GKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRV 289

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+DM+ KCG ++ A+ +F  +  + IV W ++I G AMHG   +A+ +F ++ + G+
Sbjct: 290 ATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGL 349

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P D+ F+GLL+ACSH GLV++GR +F SM++++GI PKIEHYGCMVD+L R+G ++EA 
Sbjct: 350 WPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAF 409

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
             +Q + I  + ++W +L++AC     + L + I   L+ N   +   Y+LLS+IYA + 
Sbjct: 410 HLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVG 469

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +WE+  ++R +M   G++K PG + IE+D ++YEFV GD SH  + EIY MLD+M   +K
Sbjct: 470 KWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVK 529

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           + G+VP T  VL D++E  KE AL  HSEKLA+AF L+ + PG+ I+IVKNLR C+DCH+
Sbjct: 530 EHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHA 589

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             K ISKI +R+IV RDR+RFHHF D
Sbjct: 590 VLKLISKITSRKIVFRDRNRFHHFVD 615



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H AV++     D  V   L   Y +  G ++    +     +  ++ +++ I  ++  G
Sbjct: 43  LHAAVVRKGLDSDRAVAFRLQRAYAA-SGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRG 101

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L    + L   M   G+ P   T+   L AC     L +G+ + ++  K  ++    +  
Sbjct: 102 LHLPGLALLSDMLSEGLLPTAHTLSASLPACR---GLSLGRALHAYAFKLALSGDSYVAT 158

Query: 152 ALIDMF-------------------------------AKCGDVDKALKLFRSMNGRTIVS 180
           AL+ M+                               A  G +D A +LF  +  +  + 
Sbjct: 159 ALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFIC 218

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG+  EA+ LF  ML +   PD+V  V +LSA +  G V+ G+     +K
Sbjct: 219 WNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVK 278

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N   +   +     +VDM C+ G +++A      +    + ++W  +I+     G+ + A
Sbjct: 279 NSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-NKDIVVWNAMINGYAMHGDSRKA 337


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/475 (43%), Positives = 300/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P   T    L ACA +GDL  GK VH  V + +   D+ V N+L+ MY  C+ 
Sbjct: 223 MLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F  +  +  VSW+AMI GYA+ G   +A++ F +MQ   + PD  TMV+V+ 
Sbjct: 283 -VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L      KW+   + ++ ++++V +  AL+DM+AKCG +  A KLF  MN R +++
Sbjct: 342 ALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT 401

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  +V LF+EM +  + P+D+ F+  LSACSH GLV++G  +F+SMK
Sbjct: 402 WNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMK 461

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P ++HYG MVD+L R+GR+ +A +FIQKMPI+    ++  ++ AC     + L 
Sbjct: 462 KDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLG 521

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     +    P     +VLL++IYA    W K  K+R +M+K G++K PG +L+E+ NE
Sbjct: 522 EKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNE 581

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  SH QSK+IY  L+ +  +++ AGYVP T+ +  D+ ++ K   LN HSEKL
Sbjct: 582 VHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKL 640

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T  GTPI I KNLRVC DCH+ATK+IS +  REI+VRD HRFH FKD
Sbjct: 641 AIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKD 695



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 3/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++LK C    DL  GK +HG+V+   F  ++     +V+MY  C   I   
Sbjct: 26  VRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQ-INDA 84

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             +FD M ERD V W+ MI GYA+ G +  A+ L  +M   G  PD IT+V++L A  D 
Sbjct: 85  YNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADT 144

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G  V  ++ +      V +  AL+DM++KCG V  A  +F  M+ RT+VSW S+I
Sbjct: 145 RLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMI 204

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G    G    A+ +F++ML+ GV P +V  +G L AC+  G +++G+ +   + +   +
Sbjct: 205 DGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGK-FVHKLVDQLKL 263

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +     ++ M  +  RV  A +  + +      + W  +I      G
Sbjct: 264 DSDVSVMNSLISMYSKCKRVDIAADIFKNLR-NKTLVSWNAMILGYAQNG 312



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 157/315 (49%), Gaps = 19/315 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P+  T   +L A A    L +G +VHG VL+  F   ++V   LV MY  C G
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + R +FD M  R  VSW++MI GY + G +  A+ +F++M   GV P  +T++  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG LE GK+V   +++  ++  V + N+LI M++KC  VD A  +F+++  +T+VS
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-------- 232
           W ++I G A +G   EA+  F EM    + PD    V ++ A +   +  +         
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R + D  KN F +         +VDM  + G +  A +    M    + I W  +I    
Sbjct: 361 RRFLD--KNVFVMTA-------LVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYG 410

Query: 293 ARGELKLAESITKRL 307
             G  K +  + K +
Sbjct: 411 THGLGKTSVELFKEM 425



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 19/252 (7%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           M+ GYA+      A+  F +M+   V P       +L  C D   L+ GK +   +    
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
            + ++     +++M+AKC  ++ A  +F  M  R +V W ++I+G A +G    A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKG--------REYFDSMKNDFGIIPKIEHYGC 254
            M E G  PD +  V +L A +   L+  G        R  F+S+ N             
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNV---------STA 171

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +VDM  + G V  A      M      + W ++I      G+ + A  I ++++ +E + 
Sbjct: 172 LVDMYSKCGSVSIARVIFDGMD-HRTVVSWNSMIDGYVQSGDAEGAMLIFQKML-DEGVQ 229

Query: 315 ESNYVLLSHIYA 326
            +N  ++  ++A
Sbjct: 230 PTNVTVMGALHA 241


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/475 (43%), Positives = 304/475 (64%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M E G   ++ T     KA  G+  L  GK +H  V+K  F  D+ V + ++ MY  C G
Sbjct: 1129 MQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKC-G 1187

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R+VF E+   D V+W+ MI G    G    A+  + QM++S V PDE T  T++ 
Sbjct: 1188 EMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVK 1247

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC+ L ALE G+ + + I K        +  +L+DM+AKCG+++ A  LF+  N R I S
Sbjct: 1248 ACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIAS 1307

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I GLA HG   EA+  F+ M   GV PD V F+G+LSACSH GLV +  E F SM+
Sbjct: 1308 WNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQ 1367

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             ++GI P+IEHY C+VD L R+GR++EA + I  MP EA+  ++RTL++AC  + + +  
Sbjct: 1368 KNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETG 1427

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            + + ++L+  EP   + YVLLS++YA   +WE     R +M K  +KK PG + ++L N+
Sbjct: 1428 KRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNK 1487

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ FV GD+SH ++  IY  ++ + +++++ GYVP T   L+D+ EEDKE +L  HSEKL
Sbjct: 1488 VHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKL 1547

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIA+ L+KTPP T +R++KNLRVC DCHSA K+ISK++ REIV+RD +RFHHF++
Sbjct: 1548 AIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRN 1602



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 6/298 (2%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+   V+ +  T+  +L   AG+  L LGK +HG V++      + V N L++MY    G
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKA-G 984

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   R VF +M+E D +SW+ MI G    GL   ++ +F  +    + PD+ T+ +VL 
Sbjct: 985  SVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLR 1044

Query: 121  ACTDL-GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ L G   +   + +   K  V     +  ALID+++K G +++A  LF + +G  + 
Sbjct: 1045 ACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLA 1104

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
            SW +++ G  + G   +A+ L+  M E+G   D +  V    A      + +G++ +   
Sbjct: 1105 SWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +K  F +   +     ++DM  + G ++ A     ++P   + + W T+IS C   G+
Sbjct: 1165 VKRGFNLDLFVT--SGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVENGQ 1219



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 6/302 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
            +L   + P++FT   VL+AC+ + G   L   +H   +K     D  V   L+ +Y S  
Sbjct: 1027 LLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVY-SKR 1085

Query: 60   GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            G +E    +F      D  SW+A++ GY   G    A+ L+  MQ SG   D+IT+V   
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAA 1145

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             A   L  L+ GK + + + K+  N  + + + ++DM+ KCG+++ A ++F  +     V
Sbjct: 1146 KAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDV 1205

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
            +WT++I+G   +G+   A+  + +M  + V PD+  F  L+ ACS    +++GR+ + + 
Sbjct: 1206 AWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANI 1265

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            +K +    P +     +VDM  + G +++A    ++         W  +I      G  K
Sbjct: 1266 VKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTR-RIASWNAMIVGLAQHGNAK 1322

Query: 299  LA 300
             A
Sbjct: 1323 EA 1324



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 4/207 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM--S 73
           +L+      DL+LGK  H  +L      D  V N L+ MY  C G +   RK+FD    +
Sbjct: 662 ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKC-GSLSSARKLFDTTPDT 720

Query: 74  ERDSVSWSAMIGGYA-RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            RD V+W+A++   A     S D   LFR ++ S V     T+  V   C    +    +
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +  +  K  +   V +  AL++++AK G + +A  LF  M  R +V W  ++       
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGL 219
              EA+ LF E    G  PDDV    L
Sbjct: 841 LEYEAMLLFSEFHRTGFRPDDVTLRTL 867



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 32/291 (10%)

Query: 6    VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
            VS  + T   V K C      +  +S+HG  +K     D+ V   LV++Y    G I   
Sbjct: 756  VSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKF-GLIREA 814

Query: 66   RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            R +FD M+ RD V W+ M+  Y    L  +A+ LF +   +G  PD++T+ T+       
Sbjct: 815  RVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL------- 867

Query: 126  GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWTSV 184
                V K  ++ +E +                        A KLF    +G  ++ W   
Sbjct: 868  --SRVVKCKKNILELKQFKA-------------------YATKLFMYDDDGSDVIVWNKA 906

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            ++     G   EAV  F +M+ + V  D + FV +L+  +    ++ G++    +    G
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRS-G 965

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +   +    C+++M  ++G V  A     +M  E + I W T+IS C   G
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGCTLSG 1015



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 5/199 (2%)

Query: 76   DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            D + W+  +  + + G + +A+D F  M  S V  D +T V +L+    L  LE+GK + 
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 136  SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
              + +  +++ V + N LI+M+ K G V +A  +F  MN   ++SW ++I+G  + G   
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 196  EAVALFEEMLEAGVPPDDVAFVGLLSACSHC--GLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +V +F  +L   + PD      +L ACS    G     + +  +MK   G++       
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKA--GVVLDSFVST 1076

Query: 254  CMVDMLCRSGRVKEAHEFI 272
             ++D+  + G+++EA EF+
Sbjct: 1077 ALIDVYSKRGKMEEA-EFL 1094


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/515 (41%), Positives = 321/515 (62%), Gaps = 45/515 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
           + PN+FT+P VLKACA  G +  GK +HG  LK+ FG D  V + LV MY  C       
Sbjct: 117 IEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDAC 176

Query: 59  --------------------------------EGGIELG-----RKVFDEMSERDSVSWS 81
                                           +G + LG     R +FD+M +R  VSW+
Sbjct: 177 VLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 236

Query: 82  AMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
            MI GY++ G   DA+++FR+M+    + P+ +T+V+VL A + LG+LE+G+W+  + E 
Sbjct: 237 TMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAED 296

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
             +     L +ALIDM++KCG ++KA+ +F  +    +++W+++I G A+HG+  +A+  
Sbjct: 297 SGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDC 356

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
           F +M +AGV P DVA++ LL+ACSH GLV++GR YF  M +  G+ P+IEHYGCMVD+L 
Sbjct: 357 FCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 416

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320
           R G + EA EFI  MPI+ + +IW+ L+ AC     +++ + +   L+   P     YV 
Sbjct: 417 RLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVA 476

Query: 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEM 380
           LS++YA    W + +++R  M +  ++K PG + I++D  ++EF+  D SH ++KEI  M
Sbjct: 477 LSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSM 536

Query: 381 LDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKN 440
           L E+  K++ AGY P T++VLL++ EEDKE+AL+ HSEK+A AF L+ T PG PIRIVKN
Sbjct: 537 LVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKN 596

Query: 441 LRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LR+C DCHS+ K ISK+Y R+I VRDR RFHHF+D
Sbjct: 597 LRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQD 631



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 58/344 (16%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGS--CEGG 61
           G SP    +P +   C  I DL+    +H   +K  Q  D +     L     S      
Sbjct: 12  GNSPASSLFPQI-NTCRTIRDLS---QIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRD 67

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLG--LSTDAIDLF-RQMQISGVCPDEITMVTV 118
           ++   K+F++M +R+  SW+ +I G++      +  AI LF   M    + P+  T  +V
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 119 LSACTDLGALEVGKWV-------------------------------------ESFIEKQ 141
           L AC   G ++ GK +                                     ++ IE++
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 142 MV--------NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           MV        +  V L N +ID + + GD   A  LF  M  R++VSW ++I+G + +G 
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 194 GLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
             +AV +F EM +   + P+ V  V +L A S  G ++ G E+      D GI       
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDVLG 306

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             ++DM  + G +++A    +++P E N I W  +I+     G+
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRE-NVITWSAMINGFAIHGQ 349


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 311/475 (65%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P++F    VL+ CAG+  L  G+ VHG V K  F  ++ V ++L HMY  C G
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKC-G 233

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G ++   M  ++ V+W+ +I G A+ G   + +D +  M+++G  PD+IT V+V+S
Sbjct: 234 SLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVIS 293

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C++L  L  G+ + + + K   +  V + ++LI M+++CG ++ +LK+F       +V 
Sbjct: 294 SCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVC 353

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+S+IA    HGRG+EA+ LF +M +  +  +DV F+ LL ACSHCGL +KG ++FD M 
Sbjct: 354 WSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMV 413

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P++EHY CMVD+L R G V+EA   I+ MP++A+ I W+TL+SAC    + ++A
Sbjct: 414 EKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMA 473

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
             I++ +   +P     YVLLS+I+A   RW+  + +R+ M  R +KK PG + +E+ N+
Sbjct: 474 RRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQ 533

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F  GDKSH +S EI   L E+  +MKK GYVP    VL D++ EDKE +L  HSEKL
Sbjct: 534 IHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKL 593

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFALL TP GTPIR++KNLRVC+DCH A K+IS+I NREI+VRD  RFHHFK+
Sbjct: 594 AIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKN 648



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 166/353 (47%), Gaps = 43/353 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--------- 58
           P+ F++  +L++C     L+LGK +H  ++      D  + N L+++Y  C         
Sbjct: 52  PSLFSH--LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITL 109

Query: 59  ---------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
                                 G     RK+FDEM ER+  +W+AM+ G  +   + + +
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
            LF +M   G  PDE  + +VL  C  L AL  G+ V  ++ K     ++ + ++L  M+
Sbjct: 170 GLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMY 229

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
            KCG + +  +L R+M  + +V+W ++IAG A +G   E +  +  M  AG  PD + FV
Sbjct: 230 MKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFV 289

Query: 218 GLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            ++S+CS    + +G++ + + +K    +I  +     ++ M  R G +    E+  K+ 
Sbjct: 290 SVISSCSELATLGQGQQIHAEVIKAGASLIVSV--ISSLISMYSRCGCL----EYSLKVF 343

Query: 277 IE---ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           +E    + + W ++I+A    G    A  +  ++   E +  ++   LS +YA
Sbjct: 344 LECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQM-EQEKLEANDVTFLSLLYA 395


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 311/477 (65%), Gaps = 7/477 (1%)

Query: 5   GVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           GVS ++FTY ++LKAC      +  L  GK +H  +L+  +G  +HV  TL+ MY    G
Sbjct: 165 GVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARF-G 223

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTV 118
            +     VFDEM  ++ VSWSAMI  YA+ G   +A++LFR+M ++     P+ +TMV+V
Sbjct: 224 CVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSV 283

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC    ALE GK + ++I ++ ++  + + +ALI M+A+CG ++    +F  M+ + +
Sbjct: 284 LQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDV 343

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W S+I+   +HG G +A+ +FEEM++ G  P  ++F+ +L ACSH GLV++G++ F+S
Sbjct: 344 VLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFES 403

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  + GI P +EHY CMVD+L R+ R+ EA + I+ + IE  P +W +L+ AC     ++
Sbjct: 404 MVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVE 463

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE  +KRL   EP +  NYVLL+ IYA+   W++  ++++++D R ++K+PG + IE+ 
Sbjct: 464 LAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVR 523

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +IY F   D+ + Q ++++ +L  +  +MK+ GY P T  VL D+++E+KE  +  HSE
Sbjct: 524 RKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSE 583

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+ T  G  IRI KNLR+C DCHS TKFISK  +REI+VRD +RFHHFKD
Sbjct: 584 KLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKD 640



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 155/326 (47%), Gaps = 15/326 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L +  +P + T   ++ + A    L+    VH  ++   F  D  +   L++M+   + 
Sbjct: 60  LLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDT 119

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RKVFD+  +R    W+A+    A  G   D ++L+ +M + GV  D  T   +L 
Sbjct: 120 -VDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLK 178

Query: 121 ACTD----LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           AC      +  L+ GK + + I +      V +   L+DM+A+ G V  A  +F  M  +
Sbjct: 179 ACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVK 238

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGR- 233
            +VSW+++IA  A +G+  EA+ LF EM+       P+ V  V +L AC+    +++G+ 
Sbjct: 239 NVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKL 298

Query: 234 -EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
              +   +    I+P I     ++ M  R G+++       +M  + + ++W +LIS+  
Sbjct: 299 IHAYILRRGLDSILPVI---SALITMYARCGKLESGQLIFDRMH-KKDVVLWNSLISSYG 354

Query: 293 ARGELKLAESITKRLI--GNEPMHES 316
             G  + A  I + +I  G  P H S
Sbjct: 355 LHGYGRKAIKIFEEMIDHGFSPSHIS 380



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L   LI+MF++   VD A K+F     RTI  W ++   LA+ GRG + + L+  M   G
Sbjct: 106 LATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMG 165

Query: 209 VPPDDVAFVGLLSAC--SHC--GLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           V  D   +  LL AC  S C    + KG+E +   +++ +G    +     ++DM  R G
Sbjct: 166 VSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYG--AHVHVMTTLMDMYARFG 223

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            V  A     +MP++ N + W  +I+     G+   A  + + ++ N      N V +  
Sbjct: 224 CVSYASAVFDEMPVK-NVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVS 282

Query: 324 IY---AKLLRWEKKTKIREVMDKRGMKKI 349
           +    A     E+   I   + +RG+  I
Sbjct: 283 VLQACAAFAALEQGKLIHAYILRRGLDSI 311


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 300/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV     +    L+AC  +G L+ G  VH  +++     ++ V N L+ MY  C+ 
Sbjct: 253 MVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR 312

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L   VFDE+  R  VSW+AMI G A+ G S DA+ LF +MQ+  V PD  T+V+V+ 
Sbjct: 313 -VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D+      +W+  +  +  +++ V +  ALIDM+AKCG V+ A  LF S   R +++
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  AV LFEEM   G+ P++  F+ +LSACSH GLVD+GREYF SMK
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P +EHYG MVD+L R+G++ EA  FIQKMP++    ++  ++ AC     ++LA
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELA 551

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +++    P     +VLL++IYA    W+   ++R  M+K G++K PG ++I+L NE
Sbjct: 552 EESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNE 611

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G  +H Q+KEIY  L ++  ++K  GYVP T  +  D+ ++ K   LN HSEKL
Sbjct: 612 IHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKL 670

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L++T PGT I+I KNLRVCNDCH+ATK IS +  REI++RD  RFHHFKD
Sbjct: 671 AIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKD 725



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P   T+  +LK CA  GDL  G++VH  +       +      L +MY  C  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVL 119
             +  R+VFD M  RD V+W+A++ GYAR GL+  A+++  +MQ   G  PD IT+V+VL
Sbjct: 110 PAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC +  AL   +   +F  +  +   V +  A++D + KCGD+  A  +F  M  +  V
Sbjct: 169 PACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSV 228

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I G A +G   EA+ALF  M+E GV   DV+ +  L AC   G +D+G    + +
Sbjct: 229 SWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELL 288

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     ++ M  +  RV  A     ++      + W  +I  C   G  + 
Sbjct: 289 VR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQVSWNAMILGCAQNGCSED 346

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL-IELD 358
           A  +  R+   E +   ++ L+S I A          + ++ D    + I G ++ + LD
Sbjct: 347 AVRLFTRM-QLENVKPDSFTLVSVIPA----------LADISDPLQARWIHGYSIRLHLD 395

Query: 359 NEIY 362
            ++Y
Sbjct: 396 QDVY 399



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 3/286 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  P+  T   VL ACA    L   +  H   ++    + ++V   ++  Y  C G I
Sbjct: 154 EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC-GDI 212

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
              R VFD M  ++SVSW+AMI GYA+ G S +A+ LF +M   GV   +++++  L AC
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +LG L+ G  V   + +  ++ +V + NALI M++KC  VD A  +F  ++ RT VSW 
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A +G   +AV LF  M    V PD    V ++ A +      + R +       
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR-WIHGYSIR 391

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             +   +     ++DM  + GRV  A         E + I W  +I
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR-ERHVITWNAMI 436



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 87  YARLGLSTDAIDL------FRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           +ARL  S    DL      F  M  +G  P   T  ++L  C   G L  G+ V + +  
Sbjct: 28  HARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAA 87

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           + ++       AL +M+AKC     A ++F  M  R  V+W +++AG A +G    A+ +
Sbjct: 88  RGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEM 147

Query: 201 FEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY----GCM 255
              M  E G  PD +  V +L AC++   +   RE      + F I   +E        +
Sbjct: 148 VVRMQEEEGERPDSITLVSVLPACANARALAACRE-----AHAFAIRSGLEELVNVATAI 202

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +D  C+ G ++ A      MP + N + W  +I      G+ + A ++  R++
Sbjct: 203 LDAYCKCGDIRAARVVFDWMPTK-NSVSWNAMIDGYAQNGDSREALALFNRMV 254


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/450 (45%), Positives = 299/450 (66%), Gaps = 5/450 (1%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYG--SC---EGGIELGRKVFDEMSERDSVSWSAM 83
           G ++ G V+  Q   D   + +LV +    +C    G ++  R +FD M ERD V W+ M
Sbjct: 102 GHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 161

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           I GY + G+  +A+ LFR+M  +   P+E+T+++VLSAC  LGALE G+WV S+IE   +
Sbjct: 162 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 221

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             +V +  AL+DM++KCG ++ A  +F  ++ + +V+W S+I G AMHG   EA+ LF+ 
Sbjct: 222 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKS 281

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           M   G+ P ++ F+G+LSAC H G V +G + F+ MK+++GI PKIEHYGCMV++L R+G
Sbjct: 282 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 341

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            V++A+E ++ M IE +P++W TL+ AC   G++ L E I + L+     +   Y+LLS+
Sbjct: 342 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 401

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           IYA +  W+   ++R +M   G+KK PG + IE++N+++EF+ G  +H + KEIY ML+E
Sbjct: 402 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 461

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           +   +K  GY P T  VL DI E +KE +L  HSEKLAIAF L+ T PGT I+IVKNLRV
Sbjct: 462 INGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRV 521

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           C DCH  TK ISKI  R+IVVRDR+RFHHF
Sbjct: 522 CADCHEVTKLISKITGRKIVVRDRNRFHHF 551



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 9/209 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    PN+ T   VL AC  +G L  G+ VH  +       ++HV   LV MY  C G
Sbjct: 181 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC-G 239

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD++ ++D V+W++MI GYA  G S +A+ LF+ M   G+ P  IT + +LS
Sbjct: 240 SLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILS 299

Query: 121 ACTDLGALEVGKW--VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           AC   G +  G W       ++  +   +     ++++  + G V++A +L ++MN    
Sbjct: 300 ACGHSGWVTEG-WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 358

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
            V W +++    +HG+    +AL E+++E
Sbjct: 359 PVLWGTLLGACRLHGK----IALGEKIVE 383



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 33/183 (18%)

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS----------------------- 180
           N SV    A+I   A  GDV  A +LF +M  +++VS                       
Sbjct: 90  NPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 149

Query: 181 --------WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                   W  +I G   +G   EA+ LF  ML+A   P++V  + +LSAC   G ++ G
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 209

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R     ++N+ GI   +     +VDM  + G +++A     K+  + + + W ++I    
Sbjct: 210 RWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVAWNSMIVGYA 267

Query: 293 ARG 295
             G
Sbjct: 268 MHG 270



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           +A  G +D ++ LF      ++  WT++I G A+ G  + A  LF+ M E  +    V+ 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL----VSL 127

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275
             +L+  +  G +D  R  FD M+   G+      +  M+D   ++G   EA    ++M 
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVC-----WNVMIDGYTQNGMPNEALVLFRRML 182

Query: 276 --PIEANPIIWRTLISACCARGELK 298
               + N +   +++SAC   G L+
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALE 207


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/507 (42%), Positives = 307/507 (60%), Gaps = 35/507 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  G+ P   T    L AC G   L+ G+++HG   K     D +V   L+ MY     
Sbjct: 380 MLAQGLLPTAHTLSASLPACRG---LSPGRALHGYAFKLALAGDSYVATALLGMYARAGD 436

Query: 57  ------------------------SCE---GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                   +C    G ++  R +FD +  +D V W+AMI GY +
Sbjct: 437 ATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQ 496

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK-QMVNRSVG 148
            G   +A+ LFR+M  SGV PDE+T+V VLSA   LG +E GKW+ S+++  + V  SV 
Sbjct: 497 HGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVR 556

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  ALIDM+ KCG +  A+ +F  +  + IV W ++I G AMHG   +A+ +F +  E G
Sbjct: 557 VGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQG 616

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + P D+ F+GLL+ACSH G+V++GRE+F SM+ ++GI PKIEHYGCMVD+L R+G +KEA
Sbjct: 617 LWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEA 676

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              +Q M I  + ++W +L++AC     + L + I   L+     +   Y+LLS+IYA +
Sbjct: 677 FCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAV 736

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             W +  ++R +M   G++K PG + IE+D E+YEFV GD SH ++ EIY MLD+M   +
Sbjct: 737 GNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLV 796

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K+ G+VP T  VL D++E  KE AL  HSEKLA+AF L+ T PG  I+IVKNLR C+DCH
Sbjct: 797 KEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCH 856

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +  K IS+I  R+IV RDR+RFHHF D
Sbjct: 857 AVLKLISRITGRKIVFRDRNRFHHFVD 883



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 39/303 (12%)

Query: 32  VHGAVLKFQFGD--DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           +H AVL+    D  D  V   L   Y +  G ++L   +     +  ++ +++ I  ++ 
Sbjct: 308 LHAAVLRTGLLDATDRAVAFRLQRAYAA-SGRLDLSLALLRRTRDPTAIFYTSAIHAHSS 366

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G    A+ L   M   G+ P   T+   L AC     L  G+ +  +  K  +     +
Sbjct: 367 RGHRLPALALLSDMLAQGLLPTAHTLSASLPACR---GLSPGRALHGYAFKLALAGDSYV 423

Query: 150 CNALIDMFAKCGD--------------------------------VDKALKLFRSMNGRT 177
             AL+ M+A+ GD                                +D A  LF  +  + 
Sbjct: 424 ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKD 483

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            V W ++I G   HGR  EA+ LF  ML +GV PD+V  V +LSA +  G V+ G+    
Sbjct: 484 FVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHS 543

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +KN   +   +     ++DM C+ G + +A +    +  + + ++W  +I+     G+ 
Sbjct: 544 YVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG-DKDIVVWNAMINGYAMHGDS 602

Query: 298 KLA 300
           + A
Sbjct: 603 RKA 605


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 297/475 (62%), Gaps = 30/475 (6%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGSCE------------------------------G 60
           SVH + L+     D HVQ+  V MY +                                G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R++FD M +RD V+W+AMI GY   G S +A+ LF +M+ +G    E+T+V+ L+
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S    + +  SV L  ALIDM++KCG V  A+++F SM  R + +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS ++GLAM+G G + +ALF+ M   GV P+ V FV +L  CS  GLVD+GR  FDSMK
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++ GI P +EHYGCMVD+  R+GR+ +A  FI  MP+E +  +W  L++A      ++L 
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +    +L+  E  +++ +VLLS+IYA    W+  + +R +M  +G+KK+PG + IE+  +
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF  G K+H + KEI  ML EM ++++  GY+  T EVL DI EEDKEDA++ HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P    IRIVKNLRVC DCH  TK ISK++NREIV+RDR+RFHHFKD
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 697



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G +  + T    L ACA +G L  GK VH           + +   L+ MY  C G
Sbjct: 325 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC-G 383

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VFD M ER+  +W++ + G A  G+  D + LF++M+ +GV P+ +T V VL 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 121 ACTDLGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G ++ G+   +S      ++  +     ++D++ + G +D A+     M
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 497


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/506 (39%), Positives = 318/506 (62%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML      N +T+P +LKAC+ +        +H  + K  + +D++  N+L++ Y     
Sbjct: 106 MLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGN 165

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +++   +F +M+E++++SW+ MI GY + 
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            ++ +A+ LF +MQ S V PD +++   LSAC  LGALE GKW+ S++ K  +     L 
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
             LIDM+AKCG++++AL++F+++  +++ +WT++I+G A HG G EA++ F EM + G+ 
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+ + F  +L+ACS+ GLV++G+  F SM+ D+ + P IEHYGC+VD+L R+G + EA  
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
           FIQ+MP++ N +IW  L+ AC     ++L E I + LI  +P H   YV  ++I+A   +
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKK 465

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+K  + R +M ++G+ K+PG + I L+   +EF+ GD+SH + ++I      M RK+++
Sbjct: 466 WDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEE 525

Query: 391 AGYVPTTSEVLLDINEEDKEDAL-NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            GYVP   E+LLD+ ++D+ +A+ ++HSEKLAI + L+KT PGT IRI+KNLRVC DCH 
Sbjct: 526 NGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHK 585

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
            TK ISKIY R+IV+RDR RFHHF+D
Sbjct: 586 VTKLISKIYKRDIVMRDRTRFHHFRD 611



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 54/342 (15%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-- 61
           + +  N +     L+ C+   +L   K +H  +LK     D +     +    S      
Sbjct: 8   FSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   + VFD     D+  W+ MI G++       ++ L+++M  S    +  T  ++L A
Sbjct: 65  LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C++L A E    + + I K      V   N+LI+ +A  G+   A  LF  +     VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184

Query: 182 TSVIAGLAMHGR-------------------------------GLEAVALFEEMLEAGVP 210
            SVI G    G+                                 EA+ LF EM  + V 
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244

Query: 211 PDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVK 266
           PD+V+    LSAC+  G +++G+    Y +  +     +      GC ++DM  + G ++
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-----LGCVLIDMYAKCGEME 299

Query: 267 EAHEF---IQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           EA E    I+K  ++A    W  LIS     G  +  E+I+K
Sbjct: 300 EALEVFKNIKKKSVQA----WTALISGYAYHGHGR--EAISK 335


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/474 (45%), Positives = 309/474 (65%), Gaps = 15/474 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTL---VHMYGSCEGG-IE 63
           PN   +  ++ AC   GD+  G+ +          D + V+N +   V + G  + G +E
Sbjct: 170 PNAIAWNAMVTACCRGGDMKGGRELF---------DLMPVRNLMSWNVMLAGYTKAGELE 220

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           L R++F EM  +D VSWS MI G+A  G   +A   FR++Q  G+ P+E ++  VLSAC 
Sbjct: 221 LAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACA 280

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWT 182
             GALE GK +  FIEK  +   V + NAL+D ++KCG+V  A  +F R MN R IVSWT
Sbjct: 281 QAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWT 340

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S++A LAMHG G EA+ +F +M E+G+ PD++AF+ LL ACSH GLV++G EYFD MK  
Sbjct: 341 SMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGM 400

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P IEHYGCMVD+  R+G++++A+EF+ +MPI    IIWRTL+ AC   G++KLAE 
Sbjct: 401 YNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQ 460

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + +RL   +P + S++VLLS+ YA   +W+    +R  M ++ + K PG ++IE+D  +Y
Sbjct: 461 VKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMY 520

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
            F+ G K +  ++E Y+ L E+ R+++ + GYVP    VL DI EE+KE +++ HSEKLA
Sbjct: 521 TFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLA 580

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AF + +   G  IRIVKNLR+C DCH+  K IS+IY  EIVVRDR RFH FKD
Sbjct: 581 VAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKD 634



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN+ +   VL ACA  G L  GK +HG + K      + V N L+  Y  C G + +
Sbjct: 264 GMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKC-GNVLM 322

Query: 65  GRKVFDE-MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            + VF+  M+ER+ VSW++M+   A  G   +AI +F +M+ SG+ PDEI  +++L AC+
Sbjct: 323 AQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACS 382

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSW 181
             G +E G ++ +       +  S+     ++D++ + G + KA +    M    T + W
Sbjct: 383 HAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIW 442

Query: 182 TSVIAGLAMHG 192
            +++   +MHG
Sbjct: 443 RTLLGACSMHG 453



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 113/297 (38%), Gaps = 18/297 (6%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFD 70
           T P  L        L   K +H  VLK     D  +   L+H    S    ++   ++F 
Sbjct: 4   TEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFR 63

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALE 129
                D    + +I G        D++  F +M+ +    PD  +   ++ A  +L ++ 
Sbjct: 64  YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           VG  +        ++  + +   LI M+ +CG V  A K+F  M     ++W +++    
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACC 183

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF--DSMKNDFGIIP 247
             G       LF+ M    +   +V   G   A    G ++  RE F    MK+D     
Sbjct: 184 RGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKA----GELELAREMFLEMPMKDDVS--- 236

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAE 301
               +  M+     +G  +EA  F   +Q+  +  N      ++SAC   G L+  +
Sbjct: 237 ----WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGK 289


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 300/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN  T    L AC  + +L LGK +HG VL+        V + L+ MY  C+ 
Sbjct: 490 MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDS 549

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E+   VF E+S RD V W+++I   A+ G S +A+DL R+M +S V  + +TMV+ L 
Sbjct: 550 -LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL  GK +  FI +  ++    + N+LIDM+ +CG + K+ ++F  M  R +VS
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+   MHG G++AV LF++    G+ P+ + F  LLSACSH GL+++G +YF  MK
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P +E Y CMVD+L R+G+  E  EFI+KMP E N  +W +L+ AC       LA
Sbjct: 729 TEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLA 788

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + L   EP    NYVL+++IY+   RWE   KIR +M +RG+ K PG + IE+  +
Sbjct: 789 EYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRK 848

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD SH   ++I   ++ +   +K+ GYVP T+ VL D++E++KE +L  HSEK+
Sbjct: 849 LHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKI 908

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T  GTP+RI+KNLRVC DCHSATKFISK+  R+I++RD +RFHHF D
Sbjct: 909 ALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVD 963



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 169/364 (46%), Gaps = 49/364 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCE 59
           M+  GV PN  T    + AC  +  L  G+ +HG  +K +    D+ V N+LV  Y  C 
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT---MV 116
             +E+ R+ F  + + D VSW+AM+ GYA  G   +AI+L  +M+  G+ PD IT   +V
Sbjct: 413 S-VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLV 471

Query: 117 T--------------------------------VLSACTDLGALEVGKWVESFIEKQMVN 144
           T                                 L+AC  +  L++GK +  ++ +  + 
Sbjct: 472 TGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIE 531

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            S G+ +ALI M++ C  ++ A  +F  ++ R +V W S+I+  A  GR + A+ L  EM
Sbjct: 532 LSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 591

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH----YGCMVDMLC 260
             + V  + V  V  L ACS    + +G+E      + F I   ++        ++DM  
Sbjct: 592 NLSNVEVNTVTMVSALPACSKLAALRQGKEI-----HQFIIRCGLDTCNFILNSLIDMYG 646

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK--RLIGNEPMHESNY 318
           R G ++++      MP + + + W  +IS     G    A ++ +  R +G +P H +  
Sbjct: 647 RCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 705

Query: 319 VLLS 322
            LLS
Sbjct: 706 NLLS 709



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 77/353 (21%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV P+ F +P V KAC+ + +  +GK V+  +L   F  +  V+ +++ M+  C G
Sbjct: 181 MVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKC-G 239

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ R+ F+E+  +D   W+ M+ GY   G    A+     M++SGV PD++T      
Sbjct: 240 RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT------ 293

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG----- 175
                       W                 NA+I  +A+ G  ++A K F  M G     
Sbjct: 294 ------------W-----------------NAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
             +VSWT++IAG   +G   EA+++F +M+  GV P+ +     +SAC++  L+  GRE 
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 235 ----------------------YF------DSMKNDFGIIPKIE--HYGCMVDMLCRSGR 264
                                 Y+      +  +  FG+I + +   +  M+      G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
            +EA E + +M    IE + I W  L++     G+ K A    +R+  +G +P
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP 497



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 10/285 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI--HVQNTLVHMYGSCEGG-IELGRKVF 69
           Y  +L+ C  + +L LG  VH  ++    G D+   + + L+ +Y  C+ G +E  R++F
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLV--VNGVDVCEFLGSRLLEVY--CQTGCVEDARRMF 147

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D+MSER+  SW+A++  Y  LG   + I LF  M   GV PD      V  AC++L    
Sbjct: 148 DKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 207

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           VGK V  ++       +  +  +++DMF KCG +D A + F  +  + +  W  +++G  
Sbjct: 208 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
             G   +A+    +M  +GV PD V +  ++S  +  G  ++  +YF  M       P +
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISAC 291
             +  ++    ++G   EA    +KM +E    N I   + +SAC
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 136/271 (50%), Gaps = 17/271 (6%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMS-----ERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           N ++  Y    G  E   K F EM      + + VSW+A+I G  + G   +A+ +FR+M
Sbjct: 295 NAIISGYAQ-SGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGD 162
            + GV P+ IT+ + +SACT+L  L  G+ +  + I+ + ++  + + N+L+D +AKC  
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           V+ A + F  +    +VSW +++AG A+ G   EA+ L  EM   G+ PD + + GL++ 
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV------KEAHEFIQKMP 276
            +  G      E+F  M +  G+ P       +   L   G+V      KE H ++ +  
Sbjct: 474 FTQYGDGKAALEFFQRM-HSMGMDPNTT---TISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRL 307
           IE +  +   LIS       L++A S+   L
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSEL 560


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 297/475 (62%), Gaps = 30/475 (6%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGSCE------------------------------G 60
           SVH + L+     D HVQ+  V MY +                                G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R++FD M +RD V+W+AMI GY   G S +A+ LF +M+ +G    E+T+V+ L+
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S    + +  SV L  ALIDM++KCG V  A+++F SM  R + +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS ++GLAM+G G + +ALF+ M   GV P+ V FV +L  CS  GLVD+GR  FDSMK
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++ GI P +EHYGCMVD+  R+GR+ +A  FI  MP+E +  +W  L++A      ++L 
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +    +L+  E  +++ +VLLS+IYA    W+  + +R +M  +G+KK+PG + IE+  +
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF  G K+H + KEI  ML EM ++++  GY+  T EVL DI EEDKEDA++ HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P    IRIVKNLRVC DCH  TK ISK++NREIV+RDR+RFHHFKD
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 697



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G +  + T    L ACA +G L  GK VH           + +   L+ MY  C G
Sbjct: 325 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC-G 383

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VFD M ER+  +W++ + G A  G+  D + LF++M+ +GV P+ +T V VL 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 121 ACTDLGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G ++ G+   +S      ++  +     ++D++ + G +D A+     M
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 497


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/506 (42%), Positives = 311/506 (61%), Gaps = 33/506 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC---- 58
           + G+ PN++++ F   AC     +  G+ V    +K    +++ V N L+ MYG      
Sbjct: 108 DLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVG 167

Query: 59  --------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                      G + L +++FD M ERD VSWS +I GY ++G 
Sbjct: 168 ESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGC 227

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             +A+D F +M   G  P+E T+V+ L+AC++L AL+ GKW+ ++I K  +  +  L  +
Sbjct: 228 FMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLAS 287

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           +IDM+AKCG+++ A ++F     +  V  W ++I G AMHG   EA+ +FE+M    + P
Sbjct: 288 IIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISP 347

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V F+ LL+ACSH  +V++G+ YF  M +D+ I P+IEHYGCMVD+L RSG +KEA + 
Sbjct: 348 NKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDM 407

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I  MP+  +  IW  L++AC    +++    I + + G +P H   +VLLS+IY+   RW
Sbjct: 408 ISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRW 467

Query: 332 EKKTKIREVMD-KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
            +   +RE  +  R  KKIPG + IEL    ++F+ GD+SH QS+EIY  LDEM  K+K 
Sbjct: 468 NEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKS 527

Query: 391 AGYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
           AGYVP   E+L DI +EEDKE AL+ HSEKLAIAF L+ T  GTPIRIVKNLRVC DCH 
Sbjct: 528 AGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQ 587

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           ATKFISK+YNR I+VRDR R+HHF+D
Sbjct: 588 ATKFISKVYNRVIIVRDRTRYHHFED 613



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 119/270 (44%), Gaps = 36/270 (13%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQM-QISGVCPDEITMVT 117
             +    K+FD++ + D   ++ MI  ++    S  +++ +FR + Q  G+ P+  + V 
Sbjct: 61  ASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF 120

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK--------- 168
             SAC +   ++ G+ V     K  +  +V + NALI M+ K G V ++ K         
Sbjct: 121 AFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRD 180

Query: 169 ----------------------LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
                                 LF  M  R +VSW+++IAG    G  +EA+  F +ML+
Sbjct: 181 LYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ 240

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRV 265
            G  P++   V  L+ACS+   +D+G+     + K +  +  ++     ++DM  + G +
Sbjct: 241 IGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERL--LASIIDMYAKCGEI 298

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + A     +  ++    +W  +I      G
Sbjct: 299 ESASRVFFEHKVKQKVWLWNAMIGGFAMHG 328


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 297/475 (62%), Gaps = 30/475 (6%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGSCE------------------------------G 60
           SVH + L+     D HVQ+  V MY +                                G
Sbjct: 216 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 275

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R++FD M +RD V+W+AMI GY   G S +A+ LF +M+ +G    E+T+V+ L+
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGALE GKWV S    + +  SV L  ALIDM++KCG V  A+++F SM  R + +
Sbjct: 336 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 395

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS ++GLAM+G G + +ALF+ M   GV P+ V FV +L  CS  GLVD+GR  FDSMK
Sbjct: 396 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 455

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++ GI P +EHYGCMVD+  R+GR+ +A  FI  MP+E +  +W  L++A      ++L 
Sbjct: 456 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 515

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +    +L+  E  +++ +VLLS+IYA    W+  + +R +M  +G+KK+PG + IE+  +
Sbjct: 516 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 575

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF  G K+H + KEI  ML EM ++++  GY+  T EVL DI EEDKEDA++ HSEKL
Sbjct: 576 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 635

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P    IRIVKNLRVC DCH  TK ISK++NREIV+RDR+RFHHFKD
Sbjct: 636 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKD 690



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G +  + T    L ACA +G L  GK VH           + +   L+ MY  C G
Sbjct: 318 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC-G 376

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VFD M ER+  +W++ + G A  G+  D + LF++M+ +GV P+ +T V VL 
Sbjct: 377 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 436

Query: 121 ACTDLGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G ++ G+   +S      ++  +     ++D++ + G +D A+     M
Sbjct: 437 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 490


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 318/506 (62%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML+  + P+  T+PF++KA + +  + +G+  H  +++F F +D++V+N+LVHMY +C  
Sbjct: 108 MLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGF 167

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E  R++FDEM  R+  +WS MI GYA+ 
Sbjct: 168 IAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKN 227

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
                AIDLF  M+  GV  +E  MV+V+S+C  LGALE G+    ++ K  +  ++ L 
Sbjct: 228 NCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG 287

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DMF +CGD++KA+ +F  +     +SW+S+I GLA+HG   +A+  F +M+  G  
Sbjct: 288 TALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI 347

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P DV F  +LSACSH GLV+KG E +++MK D GI P++EHYGC+VDML R+G++ EA  
Sbjct: 348 PRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAEN 407

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
           FI KM ++ N  I   L+ AC      ++AE +   LI  +P H   YVLLS+IYA   +
Sbjct: 408 FILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQ 467

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG-DKSHHQSKEIYEMLDEMGRKMK 389
           W+K   +R++M ++ +KK PG +LIE+D +I +F  G D+ H +  +I    +E+  K++
Sbjct: 468 WDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIR 527

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY   T +   D++EE+KE +++ HSEKLAIA+ ++KT PGT IRIVKNLRVC DCH+
Sbjct: 528 LIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHT 587

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
            TK IS++Y RE++VRDR+RFHHF++
Sbjct: 588 VTKLISEVYGRELIVRDRNRFHHFRN 613



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 147/338 (43%), Gaps = 44/338 (13%)

Query: 10  KFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM------YGSCEGG 61
           +F +P   +L++C+   DL   K +HG +L+     D+ V + L+ +      +      
Sbjct: 10  RFKHPKLALLQSCSSFSDL---KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNL 66

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +     +F ++   +   ++ +I  ++     + A   + QM  S + PD IT   ++ A
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            +++  + VG+   S I +      V + N+L+ M+A CG +  A ++F  M  R +VSW
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186

Query: 182 TSVIAGLA--------------MHGRGL-----------------EAVALFEEMLEAGVP 210
           TS++AG                M  R L                 +A+ LFE M   GV 
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            ++   V ++S+C+H G ++ G   ++ +      +  I     +VDM  R G +++A  
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIH 305

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
             + +P E + + W ++I      G    A     ++I
Sbjct: 306 VFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 300/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV     +    L+AC  +G L+ G  VH  +++     ++ V N L+ MY  C+ 
Sbjct: 253 MVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR 312

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L   VFDE+  R  VSW+AMI G A+ G S DA+ LF +MQ+  V PD  T+V+V+ 
Sbjct: 313 -VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D+      +W+  +  +  +++ V +  ALIDM+AKCG V+ A  LF S   R +++
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  AV LFEEM   G+ P++  F+ +LSACSH GLVD+GREYF SMK
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P +EHYG MVD+L R+G++ EA  FIQKMP++    ++  ++ AC     ++LA
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELA 551

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +++    P     +VLL++IYA    W+   ++R  M+K G++K PG ++I+L NE
Sbjct: 552 EESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNE 611

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G  +H Q+KEIY  L ++  ++K  GYVP T  +  D+ ++ K   LN HSEKL
Sbjct: 612 IHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKL 670

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L++T PGT I+I KNLRVCNDCH+ATK IS +  REI++RD  RFHHFKD
Sbjct: 671 AIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKD 725



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P   T+  +LK CA  GDL  G++VH  +       +      L +MY  C  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVL 119
             +  R+VFD M  RD V+W+A++ GYAR GL+  A+++  +MQ   G  PD IT+V+VL
Sbjct: 110 PAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC +  AL   +   +F  +  +   V +  A++D + KCGD+  A  +F  M  +  V
Sbjct: 169 PACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSV 228

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I G A +G   EA+ALF  M+E GV   DV+ +  L AC   G +D+G    + +
Sbjct: 229 SWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELL 288

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     ++ M  +  RV  A     ++      + W  +I  C   G  + 
Sbjct: 289 VR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQVSWNAMILGCAQNGCSED 346

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL-IELD 358
           A  +  R+   E +   ++ L+S I A          + ++ D    + I G ++ + LD
Sbjct: 347 AVRLFTRM-QLENVKPDSFTLVSVIPA----------LADISDPLQARWIHGYSIRLHLD 395

Query: 359 NEIY 362
            ++Y
Sbjct: 396 QDVY 399



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 3/286 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  P+  T   VL ACA    L   +  H   ++    + ++V   ++  Y  C G I
Sbjct: 154 EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC-GDI 212

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
              R VFD M  ++SVSW+AMI GYA+ G S +A+ LF +M   GV   +++++  L AC
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +LG L+ G  V   + +  ++ +V + NALI M++KC  VD A  +F  ++ RT VSW 
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A +G   +AV LF  M    V PD    V ++ A +      + R +       
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR-WIHGYSIR 391

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             +   +     ++DM  + GRV  A         E + I W  +I
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR-ERHVITWNAMI 436



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 11/218 (5%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+  F  M  +G  P   T  ++L  C   G L  G+ V + +  + ++       AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDV 214
           M+AKC     A ++F  M  R  V+W +++AG A +G    A+ +   M  E G  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY----GCMVDMLCRSGRVKEAHE 270
             V +L AC++   +   RE      + F I   +E        ++D  C+ G ++ A  
Sbjct: 163 TLVSVLPACANARALAACRE-----AHAFAIRSGLEELVNVATAILDAYCKCGDIRAARV 217

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
               MP + N + W  +I      G+ + A ++  R++
Sbjct: 218 VFDWMPTK-NSVSWNAMIDGYAQNGDSREALALFNRMV 254


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 304/537 (56%), Gaps = 62/537 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV-------- 52
           ML  GV PNK+TYPFVLKAC+G+  +  G  +H     F    D+ V   LV        
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 53  --------------------------HMYGSCEGGIEL---------------------- 64
                                      +YG C+  ++L                      
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 65  ------GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
                  RK+FD M  R+ VSWSAMIGGY       +A+D+FR MQ+SG+ PD  TM+ V
Sbjct: 220 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGV 279

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC+ L AL+ G     ++  +       +CNALIDM++KCG +  A ++F  M+   I
Sbjct: 280 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 339

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW ++I G  +HG G+EA+ LF ++L  G+ PDD+ F+ LLS+CSH GLV +GR +FD+
Sbjct: 340 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 399

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  DF I+P++EH  CMVD+L R+G + EAH FI+ MP E +  IW  L+SAC     ++
Sbjct: 400 MSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIE 459

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E ++K++    P    N+VLLS+IY+   RW+    IR      G+KKIPG + IE++
Sbjct: 460 LGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 519

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++ FV GD+SH Q  +I   L+E+  +MK+ GY    S V  D+ EE+KE  L  HSE
Sbjct: 520 GIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSE 579

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF +L    G PI + KNLRVC DCH+A KF++ I  REI VRD +RFHHFK+
Sbjct: 580 KLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKN 636



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 138/270 (51%), Gaps = 9/270 (3%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           K  Y  +L+AC     L   K +H   LK     D  V + L  +Y SC   + L R++F
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ-VVLARRLF 66

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           DE+     + W+ +I  YA  G    AIDL+  M   GV P++ T   VL AC+ L A+E
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            G  + S  +   +   V +C AL+D +AKCG + +A +LF SM+ R +V+W ++IAG +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
           ++G   +AV L  +M E G+ P+    VG+L  C  C L    R+ FD M    G+  ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC-QCLLY--ARKIFDVM----GVRNEV 239

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
             +  M+     S  +KEA +  + M +  
Sbjct: 240 S-WSAMIGGYVASDCMKEALDIFRMMQLSG 268


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/502 (42%), Positives = 316/502 (62%), Gaps = 35/502 (6%)

Query: 8   PNKFTYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------- 59
           PN++++ F  K C +G+G L  G+ V    +K    +++ V N L+ MY + +       
Sbjct: 100 PNQYSFAFAFKGCGSGVGVLE-GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARK 158

Query: 60  -----------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96
                                  G ++  R++FDEM E+D VSW+ MI G  ++G   +A
Sbjct: 159 VFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEA 218

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           +D+F  M   G+ P+E T+ + L+AC +L AL+ G+W+  +I+K  +  +  L   LIDM
Sbjct: 219 LDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDM 278

Query: 157 FAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           +AKCG+++ A KLF S     R +  W ++I G A+HG+  EA+ +FE+M    V P+ V
Sbjct: 279 YAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKV 338

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            FV LL+ACSH   V++GR YF+SM + + + P++EHYGC+VD+L R+GR+KEA E I  
Sbjct: 339 TFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISS 398

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           M +  +  IW  L+SAC    + ++ E + K +   +P H   +VLL++IY+    W + 
Sbjct: 399 MHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEA 458

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
             +RE + + G KK PG + IEL+   ++F+ GD+SH Q+K++Y  LDEM  K+K AGY+
Sbjct: 459 RTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYI 518

Query: 395 PTTSEVLLDINE-EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           P + EVLLDI++ ED+E AL KHSEKLAIAF L+ T P TPIRIVKNLRVC+DCH A KF
Sbjct: 519 PESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKF 578

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           ISK+Y+REI+VRDR R+HHFKD
Sbjct: 579 ISKVYDREIIVRDRIRYHHFKD 600



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 5/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+SPN++T    L ACA +  L+ G+ +H  + K     +  +   L+ MY  C G
Sbjct: 225 MLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKC-G 283

Query: 61  GIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E   K+F+     +R    W+AMIGG+A  G S +AI++F QM+I  V P+++T V +
Sbjct: 284 ELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVAL 343

Query: 119 LSACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           L+AC+    +E G+ + ES      V   +     L+D+  + G + +A ++  SM+   
Sbjct: 344 LNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTP 403

Query: 178 IVS-WTSVIAGLAMH 191
            V+ W ++++   +H
Sbjct: 404 DVAIWGALLSACKIH 418



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 122/298 (40%), Gaps = 21/298 (7%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F+L +C     +   K VH  ++           N L+    S    I     VFD   +
Sbjct: 6   FLLSSCKSFRQI---KQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQ 62

Query: 75  RDSVSWSAMIGGYA-RLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSAC-TDLGALEVG 131
            D   ++ +I   A     S D+   FR + +   + P++ +       C + +G LE G
Sbjct: 63  PDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLE-G 121

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + V     K  +  ++ + NALI M+     V  A K+F     R + SW  +++G A  
Sbjct: 122 EQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARL 181

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM------KNDFGI 245
           G+  EA  LF+EM E     D V++  ++S C   G   +  + F +M       N++ +
Sbjct: 182 GKMDEARQLFDEMPEK----DVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTL 237

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
              +    C   +    GR    H +I+K  I+ N  +   LI      GEL+ A  +
Sbjct: 238 ASSLA--ACANLVALDQGRW--MHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKL 291


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 312/475 (65%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V PN FT+  VLKACA + D+ LG+ V+  V+K +      V N+L+ MY  C G
Sbjct: 241 MVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRC-G 299

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD + E++ VS++ ++  YA+   S +A +LF +++ +G   +  T  ++LS
Sbjct: 300 NMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLS 359

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             + +GA+  G+ + S I K     ++ +CNALI M+++CG+++ A ++F  M    ++S
Sbjct: 360 GASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVIS 419

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG    A+  F +MLEAGV P++V ++ +LSACSH GL+ +G ++F SMK
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMK 479

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + GI+P++EHY C+VD+L RSG ++EA E +  MP +A+ ++ RT + AC   G + L 
Sbjct: 480 VEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLG 539

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   + ++  +P   + Y+LLS+++A   +WE+  +IR+ M +R + K  G + IE++N+
Sbjct: 540 KHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENK 599

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD SH Q++EIY+ LD++  K+K+ GY+P+T  VL D+ EE KE  L +HSEK+
Sbjct: 600 VHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKI 659

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+  + T    PIR+ KNLRVC DCH+A K+ S +  +EIV+RD +RFHHFKD
Sbjct: 660 AVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKD 714



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 168/351 (47%), Gaps = 48/351 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
           MLE G  PN++ +  V +AC+   +++LGK + G +LK   F  D+ V   L+ M+    
Sbjct: 33  MLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGN 92

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E   KVFD M +R+ V+W+ MI  + +LG S DA+DLF  M +SG  PD  T+  V+
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGR 176
           SAC ++G L +G+     + K  ++  V +  +L+DM+AKC   G VD A K+F  M   
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 177 TIVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSAC------------ 223
            ++SWT++I G    G    EA+ LF EM++  V P+   F  +L AC            
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 224 -----------------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
                                  S CG ++  R+ FD +         +  Y  +V+   
Sbjct: 273 YALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVL-----FEKNLVSYNTIVNAYA 327

Query: 261 RSGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +S   +EA E    I+      N   + +L+S   + G +   E I  R++
Sbjct: 328 KSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL 378



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 6/323 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G  P++FT   V+ ACA +G L+LG+  H  V+K     D+ V  +LV MY  C  
Sbjct: 136 MVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVA 195

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVT 117
           +G ++  RKVFD M   + +SW+A+I GY + G    +AI+LF +M    V P+  T  +
Sbjct: 196 DGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSS 255

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL AC +L  + +G+ V + + K  +     + N+LI M+++CG+++ A K F  +  + 
Sbjct: 256 VLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKN 315

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VS+ +++   A      EA  LF E+  AG   +   F  LLS  S  G + KG +   
Sbjct: 316 LVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHS 375

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG-E 296
            +    G    +     ++ M  R G ++ A +   +M  + N I W ++I+     G  
Sbjct: 376 RILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFA 433

Query: 297 LKLAESITKRLIGNEPMHESNYV 319
            +  E+  K L      +E  Y+
Sbjct: 434 TRALETFHKMLEAGVSPNEVTYI 456



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           ++RD VSWSA+I  YA    + +AI  F  M   G  P+E     V  AC++   + +GK
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 133 WVESFIEKQMVNRS-VGLCNALIDMFAK-CGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            +  F+ K     S V +  ALIDMF K  GD++ A K+F  M  R +V+WT +I     
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKI 249
            G   +AV LF +M+ +G  PD     G++SAC+  GL+  GR++    MK+   +   +
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 250 EHYGC-MVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              GC +VDM  +    G V +A +   +MP+  N + W  +I+     G
Sbjct: 183 ---GCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSG 228


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/403 (48%), Positives = 275/403 (68%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           S R+SV+W+ MI  Y + G    AI +F+QMQ   V P E+TMV++LSAC  LGAL++G+
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
           W+  +I  + +   V L NALIDM+ KCG ++ A+ +F  ++ + I  W S+I GL M+G
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
           RG EA+A F  M + G+ PD V FVG+LS CSH GL+  G+ YF  M   +G+ P +EHY
Sbjct: 286 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHY 345

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312
           GCMVD+L R+G +KEA E I+ MP++ N ++  +L+ AC    + KL E +T++L+  +P
Sbjct: 346 GCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP 405

Query: 313 MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHH 372
               NYV LS++YA L RW+     R++M KRG+ K PG + IE++N ++EFV GD SH 
Sbjct: 406 CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHP 465

Query: 373 QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPG 432
           Q  +I   LDE+ +++K  G+VP T+ VL DI EE+KE A+  HSE++A+AF L+ TPPG
Sbjct: 466 QFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPG 525

Query: 433 TPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             IR+VKNLR C+DCHSA K IS  + REI+VRDR RFHHF++
Sbjct: 526 KTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRN 568



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V P + T   +L ACA +G L++G+ +HG +   +   D+ + N L+ MY  C G
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKC-G 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF  +S ++   W+++I G    G   +AI  F  M+  G+ PD +T V +LS
Sbjct: 255 ALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILS 314

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G L  G ++    +    +   V     ++D+  + G + +AL+L R+M
Sbjct: 315 GCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 368



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V P + +   +L +C   G  ++G+     I K      + L   L+D +AK GD+  A 
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           ++F  M  R +V+  ++I+ L+ HG   EA  LF+ M E     +  ++  +++     G
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCKLG 121

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
            ++  R  FD        +  +  +  ++D  C+S ++  A E    M    N + W T+
Sbjct: 122 DINSARLMFDC-----NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176

Query: 288 ISACCARGELKLAESITKRL 307
           ISA    GE   A S+ +++
Sbjct: 177 ISAYVQCGEFGTAISMFQQM 196


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 314/561 (55%), Gaps = 93/561 (16%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ------------------- 48
           P+ FT P V+K CA +G +  GK +HG  LK  FG D+ VQ                   
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169

Query: 49  ------------NTLVHMYGSCE------------------------------GGIELGR 66
                       N+L+  Y  C                               G +E  R
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESAR 229

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-------------------- 106
           K+FD+M  R+ VSW+AMI GY + G    A++LF QM I                     
Sbjct: 230 KLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMD 289

Query: 107 -----------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
                      G  P   T+V+VLSA + L  L  G+W+ S++EK        L  +LI+
Sbjct: 290 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 349

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKCG ++ AL +FR++  + +  WT++I GL +HG    A+ALF EM + G+ P+ + 
Sbjct: 350 MYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAII 409

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+G+L+AC+H GLVD GR+YFD M N++ I P +EHYGC+VD+LCR+G ++EA   I+ M
Sbjct: 410 FIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENM 469

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           PI  N +IW +L+      G++ + E   +R+I   P     Y+LLS++YA    WEK +
Sbjct: 470 PISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVS 529

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
            +RE+M KRG +K PG + +E    ++EF+ GD SH Q+KEIY  + EM  K+K  G+VP
Sbjct: 530 HVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVP 589

Query: 396 TTSEVLLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
            T++VLL I  E++KE  L  HSE+LAIAF L+   PG PIRI+KNLRVCNDCHS TK +
Sbjct: 590 DTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLL 649

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SKIY+REI+VRD  RFHHFK+
Sbjct: 650 SKIYSREIIVRDNCRFHHFKN 670



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           + +H   LK    +   V + L+ +Y   +   +   R +FD +  R  + W+ +I  Y 
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
               S D I LF ++ +    PD  T+  V+  C  LG ++ GK +     K      V 
Sbjct: 90  ENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  +L++M++KCG++D A K+F  M  + +V W S+I G A  G    A+ LFEEM E  
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER- 207

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
              D  ++  L+   S CG V+  R+ FD M         +  +  M++   +SG    A
Sbjct: 208 ---DAFSWTVLVDGLSKCGKVESARKLFDQMP-----CRNLVSWNAMINGYMKSGDFDSA 259

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEPMHESNYVLLSHIYA 326
            E   +MPI  + + W  +I+     G+   A  +   +  +G+ P H +   +LS + +
Sbjct: 260 LELFYQMPI-WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV-S 317

Query: 327 KLLRWEKKTKIREVMDKRG--MKKIPGSTLIEL 357
            L    K   I   M+K G  +  I G++LIE+
Sbjct: 318 GLAVLGKGRWIHSYMEKNGFELDGILGTSLIEM 350



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G  P+  T   VL A +G+  L  G+ +H  + K  F  D  +  +L+ MY  C G
Sbjct: 297 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC-G 355

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE    VF  + ++    W+A+I G    G++  A+ LF +M  +G+ P+ I  + VL+
Sbjct: 356 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 415

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC   G ++ G+ + +  + +  +  ++     L+D+  + G +++A     +M      
Sbjct: 416 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 475

Query: 179 VSWTSVIAGLAMHGR 193
           V W S++ G   HG+
Sbjct: 476 VIWMSLLGGSRNHGK 490


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/470 (46%), Positives = 302/470 (64%), Gaps = 9/470 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-IELGR 66
           PN   +  V+ AC   GD      V GA + F      ++ +  V + G  + G +EL R
Sbjct: 170 PNVVAWNAVVTACFRCGD------VKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELAR 223

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+F EM  +D VSWS MI G+A  G   +A   FR++Q  G+ P+E+++   LSAC D G
Sbjct: 224 KLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAG 283

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVI 185
           A+E GK +  FIEK      V + NAL+D ++KCG+V  A  +F  M   R+IVSWTS+I
Sbjct: 284 AIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMI 343

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AGLAMHG G EA+ LF EM E+G+ PD +AF+ +L ACSH GL++KG EYF  MK+ + I
Sbjct: 344 AGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNI 403

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P IEHYGCMVD+  R+G++ +A+EFI  MP+    IIWRTL+ AC   G +KLAE + +
Sbjct: 404 EPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKE 463

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           RL   +P +  ++VLLS+IYA   +W+    +R  M  + M K PG ++IE+D  +Y FV
Sbjct: 464 RLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFV 523

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAG-YVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
            G+  +  ++E YE L E+  K++  G Y+P    VL DI +E+KED++++HSEKLA+AF
Sbjct: 524 AGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAF 583

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            + +   G+ IRIVKNLRVC DCH+  K ISK+Y  EIVVRDR RFH FK
Sbjct: 584 GIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFK 633



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 4/193 (2%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G+ PN+ +    L ACA  G +  GK +HG + K  F   + V N L+  Y  C G +
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKC-GNV 320

Query: 63  ELGRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            + R VF+ M E+ S VSW++MI G A  G   +AI LF +M+ SG+ PD I  +++L A
Sbjct: 321 GMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYA 380

Query: 122 CTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
           C+  G +E G ++     +   +  ++     ++D++ + G +DKA +    M    T +
Sbjct: 381 CSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAI 440

Query: 180 SWTSVIAGLAMHG 192
            W +++   ++HG
Sbjct: 441 IWRTLLGACSIHG 453



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 44/289 (15%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKV-FDEMSER-----DSVSWSAMIGGYARLGLSTDAI 97
           D+ + NTL+   G  E        + F EM  R     DS S++ ++   A        I
Sbjct: 69  DVFMHNTLIR--GLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGI 126

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
            L  Q  + G+        T++S  ++ G +   K V     ++M   +V   NA++   
Sbjct: 127 QLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVF----EEMFEPNVVAWNAVVTAC 182

Query: 158 AKCGDVDKALKLFRSMNGRTI-------------------------------VSWTSVIA 186
            +CGDV  A  +F  M  R +                               VSW+++I 
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G A +G   EA   F E+ + G+ P++V+  G LSAC+  G ++ G+     ++   G +
Sbjct: 243 GFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKS-GFL 301

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +     ++D   + G V  A    ++MP + + + W ++I+     G
Sbjct: 302 WMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHG 350


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/491 (42%), Positives = 309/491 (62%), Gaps = 17/491 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-------QFG---DDIHVQNT 50
           M+  G  PN  T   VL ACA +G  + G  +H   LK         FG   +D+ V N 
Sbjct: 247 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 306

Query: 51  LVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QIS 106
           L+ MY  C    +  R +FD+  + ER+ V+W+ MIGG+A+ G S DA+ LF +M  +  
Sbjct: 307 LIDMYSKCRS-FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 365

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVD 164
           GV P+  T+  +L AC  L A+ +GK + +++ +  Q  + +  + N LI+M++KCGDVD
Sbjct: 366 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 425

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F SM+ ++ +SWTS++ G  MHGRG EA+ +F++M +AG  PDD+ F+ +L ACS
Sbjct: 426 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 485

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           HCG+VD+G  YFDSM  D+G+ P+ EHY   +D+L R GR+ +A + ++ MP+E   ++W
Sbjct: 486 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 545

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+SAC     ++LAE    +L+     ++ +Y L+S+IYA   RW+   +IR +M K 
Sbjct: 546 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 605

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+KK PG + ++       F  GD+SH  S +IY +L+ +  ++K  GYVP T+  L D+
Sbjct: 606 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDV 665

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +EE+K + L +HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EIVV
Sbjct: 666 DEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVV 725

Query: 465 RDRHRFHHFKD 475
           RD  RFHHFK+
Sbjct: 726 RDPSRFHHFKN 736



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 56/366 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G   + FT P VLKAC  +     G + HG +    F  ++ + N LV MY  C G
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-G 59

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPD 111
            +E    +FDE+++R   D +SW++++  + +   +  A+DLF +M +      +    D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L A+   K V     +      V + NALID +AKCG ++ A+K+F 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   WT+VIAG +  G   E
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPK 248
           A+ +F +M+ +G  P+ V  + +LSAC+  G   +G E           ++ NDFG   +
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 249 -IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKR 306
            +  Y  ++DM  +    K A      +P+E  N + W  +I      G+   A  +   
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 307 LIGNEP 312
           +I +EP
Sbjct: 360 MI-SEP 364



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 66/331 (19%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L AC  +  +   K VHG  ++     D+ V N L+  Y  C G +E   KVF+ M  +
Sbjct: 126 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC-GLMENAVKVFNMMEFK 184

Query: 76  DSVSWSAM-----------------------------------IGGYARLGLSTDAIDLF 100
           D VSW+AM                                   I GY++ G S +A+++F
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV----------NRSVGLC 150
           RQM  SG  P+ +T+++VLSAC  LGA   G  + ++  K  +          +  + + 
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 151 NALIDMFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           NALIDM++KC     A  +F    +  R +V+WT +I G A +G   +A+ LF EM+   
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--------GCMVDM 258
            GV P+      +L AC+H   +  G++           + +   Y         C+++M
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQI-------HAYVLRHHQYDSSAYFVANCLINM 417

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             + G V  A      M  + + I W ++++
Sbjct: 418 YSKCGDVDTARHVFDSMS-QKSAISWTSMMT 447


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/491 (42%), Positives = 309/491 (62%), Gaps = 17/491 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-------QFG---DDIHVQNT 50
           M+  G  PN  T   VL ACA +G  + G  +H   LK         FG   +D+ V N 
Sbjct: 354 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 413

Query: 51  LVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QIS 106
           L+ MY  C    +  R +FD+  + ER+ V+W+ MIGG+A+ G S DA+ LF +M  +  
Sbjct: 414 LIDMYSKCRS-FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 472

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVD 164
           GV P+  T+  +L AC  L A+ +GK + +++ +  Q  + +  + N LI+M++KCGDVD
Sbjct: 473 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 532

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F SM+ ++ +SWTS++ G  MHGRG EA+ +F++M +AG  PDD+ F+ +L ACS
Sbjct: 533 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 592

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           HCG+VD+G  YFDSM  D+G+ P+ EHY   +D+L R GR+ +A + ++ MP+E   ++W
Sbjct: 593 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 652

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+SAC     ++LAE    +L+     ++ +Y L+S+IYA   RW+   +IR +M K 
Sbjct: 653 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 712

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+KK PG + ++       F  GD+SH  S +IY +L+ +  ++K  GYVP T+  L D+
Sbjct: 713 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDV 772

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +EE+K + L +HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EIVV
Sbjct: 773 DEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVV 832

Query: 465 RDRHRFHHFKD 475
           RD  RFHHFK+
Sbjct: 833 RDPSRFHHFKN 843



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 56/366 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G   + FT P VLKAC  +     G + HG +    F  ++ + N LV MY  C G
Sbjct: 108 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-G 166

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPD 111
            +E    +FDE+++R   D +SW++++  + +   +  A+DLF +M +      +    D
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L A+   K V     +      V + NALID +AKCG ++ A+K+F 
Sbjct: 227 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 286

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   WT+VIAG +  G   E
Sbjct: 287 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 346

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPK 248
           A+ +F +M+ +G  P+ V  + +LSAC+  G   +G E           ++ NDFG   +
Sbjct: 347 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 406

Query: 249 -IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKR 306
            +  Y  ++DM  +    K A      +P+E  N + W  +I      G+   A  +   
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 466

Query: 307 LIGNEP 312
           +I +EP
Sbjct: 467 MI-SEP 471



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 66/331 (19%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L AC  +  +   K VHG  ++     D+ V N L+  Y  C G +E   KVF+ M  +
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC-GLMENAVKVFNMMEFK 291

Query: 76  DSVSWSAM-----------------------------------IGGYARLGLSTDAIDLF 100
           D VSW+AM                                   I GY++ G S +A+++F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV----------NRSVGLC 150
           RQM  SG  P+ +T+++VLSAC  LGA   G  + ++  K  +          +  + + 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 151 NALIDMFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
           NALIDM++KC     A  +F    +  R +V+WT +I G A +G   +A+ LF EM+   
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--------GCMVDM 258
            GV P+      +L AC+H   +  G++           + +   Y         C+++M
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQI-------HAYVLRHHQYDSSAYFVANCLINM 524

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             + G V  A      M  + + I W ++++
Sbjct: 525 YSKCGDVDTARHVFDSMS-QKSAISWTSMMT 554



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 119/267 (44%), Gaps = 14/267 (5%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           +V  Y +C G  +    V + ++   +V W+ +I  + + G    AI++  +M  +G   
Sbjct: 57  VVASYLAC-GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRL 115

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+  VL AC +L +   G      I       +V +CNAL+ M+++CG +++A  +F
Sbjct: 116 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 175

Query: 171 RSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEML------EAGVPPDDVAFVGLLS 221
             +  R I   +SW S+++          A+ LF +M             D ++ V +L 
Sbjct: 176 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 235

Query: 222 ACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           AC     V + +E + ++++N  G    +     ++D   + G ++ A +    M  + +
Sbjct: 236 ACGSLKAVPQTKEVHGNAIRN--GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-D 292

Query: 281 PIIWRTLISACCARGELKLAESITKRL 307
            + W  +++     G  K A  + K +
Sbjct: 293 VVSWNAMVAGYSQSGNFKAAFELFKNM 319


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/471 (44%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   VL ACA + DL  G++V  A  +      + V    V +Y  C G +  
Sbjct: 214 GMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKC-GEMAK 272

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD+M ++D+V+W AM+GGYA  G   +A+DLF  MQ  GV PD   +   LSACT 
Sbjct: 273 AREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTR 332

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL++G+     ++      +  L  ALIDM+AKCG   +A  +F+ M  + I+ W ++
Sbjct: 333 LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAM 392

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GL M G    A  L  +M ++GV  +D  F+GLL +C+H GL+  GR YF +M   + 
Sbjct: 393 ILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 452

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEHYGC+VD+L R+G ++EAH+ I  MP+ AN +I   L+  C      +LAE + 
Sbjct: 453 ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVL 512

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +LI  EP +  NYV+LS+IY+   RWE   K+R  M ++G++K+P  + +E + +++EF
Sbjct: 513 TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEF 572

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
             GDKSH  S +IY+ LDE+G +MK  GY PTT  V+ D+ +E+KE  L  HSEKLAIAF
Sbjct: 573 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 632

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LL T PG  IR+ KNLRVC+DCH+A K IS+I +REI+VRD +RFH F+D
Sbjct: 633 NLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRD 683



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T+P  LK+ + +   L  G+ +H   LK     + HV  +L+ +Y  C G +   
Sbjct: 114 NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC-GLLHRA 172

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFDEM    +VSW+A+I  Y   G   +A+ + R    +G+ PD  T V VL+AC  +
Sbjct: 173 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 232

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  G+ V    E++ + +SV +  A +D++ KCG++ KA ++F  M  +  V+W +++
Sbjct: 233 ADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMV 292

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FG 244
            G A +G   EA+ LF  M   GV PD  A  G LSAC+  G +D GR+    +  D F 
Sbjct: 293 GGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 352

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
             P +     ++DM  + G   EA    Q+M  + + I+W  +I      G  K A ++ 
Sbjct: 353 DNPVLG--TALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKTAFTLI 409

Query: 305 KRL 307
            ++
Sbjct: 410 GQM 412


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/471 (44%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   VL ACA + DL  G++V  A  +      + V    V +Y  C G +  
Sbjct: 167 GMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKC-GEMAK 225

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD+M ++D+V+W AM+GGYA  G   +A+DLF  MQ  GV PD   +   LSACT 
Sbjct: 226 AREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTR 285

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL++G+     ++      +  L  ALIDM+AKCG   +A  +F+ M  + I+ W ++
Sbjct: 286 LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAM 345

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GL M G    A  L  +M ++GV  +D  F+GLL +C+H GL+  GR YF +M   + 
Sbjct: 346 ILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 405

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEHYGC+VD+L R+G ++EAH+ I  MP+ AN +I   L+  C      +LAE + 
Sbjct: 406 ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVL 465

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +LI  EP +  NYV+LS+IY+   RWE   K+R  M ++G++K+P  + +E + +++EF
Sbjct: 466 TQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEF 525

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
             GDKSH  S +IY+ LDE+G +MK  GY PTT  V+ D+ +E+KE  L  HSEKLAIAF
Sbjct: 526 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 585

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LL T PG  IR+ KNLRVC+DCH+A K IS+I +REI+VRD +RFH F+D
Sbjct: 586 NLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRD 636



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T+P  LK+ + +   L  G+ +H   LK     + HV  +L+ +Y  C G +   
Sbjct: 67  NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARC-GLLHRA 125

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFDEM    +VSW+A+I  Y   G   +A+ + R    +G+ PD  T V VL+AC  +
Sbjct: 126 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 185

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  G+ V    E++ + +SV +  A +D++ KCG++ KA ++F  M  +  V+W +++
Sbjct: 186 ADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMV 245

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FG 244
            G A +G   EA+ LF  M   GV PD  A  G LSAC+  G +D GR+    +  D F 
Sbjct: 246 GGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 305

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
             P +     ++DM  + G   EA    Q+M  + + I+W  +I      G  K A ++ 
Sbjct: 306 DNPVLG--TALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKTAFTLI 362

Query: 305 KRL 307
            ++
Sbjct: 363 GQM 365


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/484 (43%), Positives = 312/484 (64%), Gaps = 12/484 (2%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G V  +K T+PFVLKACA +  L+ G+ +H  +LK  F  D+++ N+LVH Y +C+
Sbjct: 118 MLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCD 177

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++  + VFD MSER  VSW+ +I  + R G    A++LF +MQ     PD  T+ ++ 
Sbjct: 178 R-LDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIA 235

Query: 120 SACTDLGALEVGKWVESFIEKQM----VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +AC  +G+L +G W   F+ K+     VN  V L  +L+DM+ KCG ++ AL+LF  M  
Sbjct: 236 NACAGMGSLSLGMWAHVFLLKKFDADRVN-DVLLNTSLVDMYCKCGSLELALQLFHRMPK 294

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGRE 234
           R + SW S+I G + HG    A+  F  M+    + P+ + FVG+LSAC+H GLV +GR 
Sbjct: 295 RDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRR 354

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFD M  ++ I P++EHYGC+VD+L R+G + EA + +  MP+  + +IWR+L+ ACC +
Sbjct: 355 YFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQ 414

Query: 295 GE-LKLAESITKRLIGNEP-MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
              ++L+E + +R++  E  +    YVLLS +YA   RW     +R++M  +G+ K PG 
Sbjct: 415 NAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGC 474

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDINEEDKED 411
           + IE+D   +EF  GD SH Q++EIY  LD +  ++++ GY P +S+  ++D   + K+ 
Sbjct: 475 SSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQY 534

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           +L  HSE+LAIAF LLKT PG PIRI KNLRVCN+CH  TK IS+++NREI+VRDR RFH
Sbjct: 535 SLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFH 594

Query: 472 HFKD 475
           HFKD
Sbjct: 595 HFKD 598



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTD----AIDLFRQMQISG-VCPDEITMVTVLSA 121
           +VF ++   +S  W+A+I   AR   STD    AI L+ +M   G V  D+ T   VL A
Sbjct: 81  RVFHQIENPNSFMWNALIRACAR---STDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKA 137

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  L AL  G+ + + I K   +  V + N+L+  +A C  +D A  +F  M+ R++VSW
Sbjct: 138 CAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSW 197

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG--REYFDSM 239
             VI      G    A+ LF EM +    PD      + +AC+  G +  G     F   
Sbjct: 198 NVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLK 256

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K D   +  +     +VDM C+ G ++ A +   +MP + +   W ++I      GE+  
Sbjct: 257 KFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAA 315

Query: 300 A 300
           A
Sbjct: 316 A 316


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 297/476 (62%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P + T+  +L ACA       GK +H  +L+     + H+ N L++MY  C G
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC-G 480

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + VF+    RD +SW++MI G+A+ G    A  LF++MQ   + PD IT  +VLS
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +  ALE+GK +   I +  +   V L NALI+M+ +CG +  A  +F S+  R ++S
Sbjct: 541 GCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           WT++I G A  G  ++A+ LF +M   G  PPD   F  +LSAC+H GLV +G + F SM
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSM 660

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           ++++G++P IEHYGC+V +L R+ R +EA   I +MP   +  +W TL+ AC   G + L
Sbjct: 661 ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 720

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE      +     + + Y+LLS++YA   RW+   KIR VM+ RG++K PG + IE+DN
Sbjct: 721 AEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 780

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+EF+  D+SH ++ EIY  L  +  +M++AGY P T  VL D+ +  +E +L  HSE+
Sbjct: 781 IIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSER 840

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA+ L+KTPPGTPIRI KNLR+C DCH+A+KFISK+  REI+ RD +RFH FK+
Sbjct: 841 LAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKN 896



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 154/292 (52%), Gaps = 3/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+ N+ TY  +L AC+    L  GK +H  + +     D+ + N L+ MY  C G +  
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC-GDLPK 383

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F  M +RD +SW+A+I GYAR     +A+ L++QMQ  GV P  +T + +LSAC +
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             A   GK +   I +  +  +  L NAL++M+ +CG + +A  +F     R ++SW S+
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG A HG    A  LF+EM    + PD++ F  +LS C +   ++ G++    +  + G
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESG 562

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   +     +++M  R G +++A      +    + + W  +I  C  +GE
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIGGCADQGE 613



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PNK TY  +L AC    +L  GK +H  ++K  +  D  VQN+L+ MYG C G
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKC-G 177

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VF  +S RD VS++ M+G YA+     + + LF QM   G+ PD++T + +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T    L+ GK +     ++ +N  + +  AL+ M  +CGDVD A + F+ +  R +V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVV 297

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++IA LA HG  +EA   +  M   GV  +   ++ +L+ACS    ++ G+     + 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D G    ++    ++ M  R G + +A E    MP + + I W  +I+    R +   A
Sbjct: 358 ED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEA 415

Query: 301 ESITKRL 307
             + K++
Sbjct: 416 MRLYKQM 422



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 4/322 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+SP+K TY  +L A      L+ GK +H   ++     DI V   LV M   C G
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC-G 278

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  ++ F  +++RD V ++A+I   A+ G + +A + + +M+  GV  +  T +++L+
Sbjct: 279 DVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   ALE GK + S I +   +  V + NALI M+A+CGD+ KA +LF +M  R ++S
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG A      EA+ L+++M   GV P  V F+ LLSAC++      G+   + + 
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              GI         +++M  R G + EA    +      + I W ++I+     G  + A
Sbjct: 459 RS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETA 516

Query: 301 ESITKRLIGNEPMHESNYVLLS 322
             + + +  NE +   N    S
Sbjct: 517 YKLFQEM-QNEELEPDNITFAS 537



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 151/287 (52%), Gaps = 3/287 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++ TY  +L+ C     L   K +H  +++   G DI + N L++MY  C   ++   +V
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD-AHQV 84

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F EM  RD +SW+++I  YA+ G    A  LF +MQ +G  P++IT +++L+AC     L
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E GK + S I K    R   + N+L+ M+ KCGD+ +A ++F  ++ R +VS+ +++   
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A      E + LF +M   G+ PD V ++ LL A +   ++D+G+     +  + G+   
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSD 263

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           I     +V M  R G V  A +  + +  + + +++  LI+A    G
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHG 309


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   VL ACA I DL  G++V  A  +      + V    V +Y  C G +  
Sbjct: 167 GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKC-GEMAK 225

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD+M  +D+V+W AM+GGYA  G   +A+DLF  MQ  G+ PD   +   LSACT 
Sbjct: 226 AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTR 285

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL++G+     ++      +  L  ALIDM+AKCG   +A  +F+ M  + I+ W ++
Sbjct: 286 LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 345

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GL M G    A AL  +M ++GV  +D  F+GLL +C+H GL+  GR YF +M   + 
Sbjct: 346 ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 405

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEHYGCMVD+L R+G ++EAH+ +  MP+ AN +I   L+  C      +LAE + 
Sbjct: 406 ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 465

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           K+LI  EP +  NYV+LS+IY+   RWE   K+R  M  +G++K+P  + +E + +++EF
Sbjct: 466 KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 525

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
             GDKSH  S +IY+ LDE+G +MK  GY PTT  V+ D+ +E+KE  L  HSEKLAIAF
Sbjct: 526 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 585

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LL T PG  IR+ KNLRVC+DCH+A K +S+I +REI+VRD +RFH F+D
Sbjct: 586 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 636



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 6/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T P  LK+ + +   L  G+ +H   LK     + HV  +L+ +Y  C G +   
Sbjct: 67  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-GLLHRA 125

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFDEM    +V W+A+I  Y   G   +A+ + R    +G+ PD  T V VL+AC  +
Sbjct: 126 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 185

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  G+ V    E++ V +SV +  A +D++ KCG++ KA ++F  M  +  V+W +++
Sbjct: 186 ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 245

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FG 244
            G A +G   EA+ LF  M   G+ PD  A  G LSAC+  G +D GR+    +  D F 
Sbjct: 246 GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 305

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
             P +     ++DM  + G   EA    Q+M  + + I+W  +I      G  K+A ++ 
Sbjct: 306 DNPVLG--TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALV 362

Query: 305 KRL 307
            ++
Sbjct: 363 GQM 365


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G+ P+ FT   VL ACA I DL  G++V  A  +      + V    V +Y  C G +  
Sbjct: 622  GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKC-GEMAK 680

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             R+VFD+M  +D+V+W AM+GGYA  G   +A+DLF  MQ  G+ PD   +   LSACT 
Sbjct: 681  AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTR 740

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            LGAL++G+     ++      +  L  ALIDM+AKCG   +A  +F+ M  + I+ W ++
Sbjct: 741  LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 800

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I GL M G    A AL  +M ++GV  +D  F+GLL +C+H GL+  GR YF +M   + 
Sbjct: 801  ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 860

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P+IEHYGCMVD+L R+G ++EAH+ +  MP+ AN +I   L+  C      +LAE + 
Sbjct: 861  ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 920

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            K+LI  EP +  NYV+LS+IY+   RWE   K+R  M  +G++K+P  + +E + +++EF
Sbjct: 921  KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 980

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              GDKSH  S +IY+ LDE+G +MK  GY PTT  V+ D+ +E+KE  L  HSEKLAIAF
Sbjct: 981  RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 1040

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             LL T PG  IR+ KNLRVC+DCH+A K +S+I +REI+VRD +RFH F+D
Sbjct: 1041 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 1091



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 6/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T P  LK+ + +   L  G+ +H   LK     + HV  +L+ +Y  C G +   
Sbjct: 522 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-GLLHRA 580

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFDEM    +V W+A+I  Y   G   +A+ + R    +G+ PD  T V VL+AC  +
Sbjct: 581 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 640

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  G+ V    E++ V +SV +  A +D++ KCG++ KA ++F  M  +  V+W +++
Sbjct: 641 ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 700

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FG 244
            G A +G   EA+ LF  M   G+ PD  A  G LSAC+  G +D GR+    +  D F 
Sbjct: 701 GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 760

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
             P +     ++DM  + G   EA    Q+M  + + I+W  +I      G  K+A ++ 
Sbjct: 761 DNPVLG--TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALV 817

Query: 305 KRL 307
            ++
Sbjct: 818 GQM 820


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/477 (43%), Positives = 300/477 (62%), Gaps = 30/477 (6%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYG------------------------------S 57
           L  SVH A  +     D HVQ+  V MY                               S
Sbjct: 142 LAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALS 201

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             G ++  R++FD M +RD V+W+AM+ GY R+G S +A+ LF +MQ +GV   E+T+V+
Sbjct: 202 AGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVS 261

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL+AC  +GALE G WV S++  + +  SV L  AL+DM++KCG V  ++++F +M  R 
Sbjct: 262 VLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERN 321

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           I +WTS ++GLAM+G G E + LF+ M  AG+ P+ V FV +L  CS  GLV++GR  FD
Sbjct: 322 IYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFD 381

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           SMK+   + P +EHYGCMVD+  R+GR+ +A +FI  MP+E +  +W  L++A      +
Sbjct: 382 SMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNV 441

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            L +    +L   E  +++ +VLLS+IYA+   W+  +K+R +M  +G+KK+PG + IE+
Sbjct: 442 DLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEV 501

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D +++EF  G KSH + K+I  ML EM  +++  GY   T EVL DI EE+KE A++ HS
Sbjct: 502 DGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHS 561

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           EKLA+AF L+  P  T IRIVKNLRVC DCH  TK ISK+++REIV+RDR+RFHHFK
Sbjct: 562 EKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFK 618



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV+ ++ T   VL ACA +G L  G  VH  V        + +   LV MY  C G
Sbjct: 247 MQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKC-G 305

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + +  +VF+ M ER+  +W++ + G A  G+  + ++LF++M+ +G+ P+ +T V VL 
Sbjct: 306 VVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLR 365

Query: 121 ACTDLGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G +E G+   +S  +K  V   +     ++D++ + G +D A+    SM
Sbjct: 366 GCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSM 419


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/501 (39%), Positives = 314/501 (62%), Gaps = 32/501 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++PN FT+ F+ + C+     +LG+  HG V+K  F  D+ V+N+++  Y  C G +   
Sbjct: 88  LAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVC-GRLNDA 146

Query: 66  RKVFDE-------------------------------MSERDSVSWSAMIGGYARLGLST 94
           R VFDE                               M+ER+ +SW+ MI GYA+ G   
Sbjct: 147 RWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPK 206

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+ LFR+MQ+    P+   +V+VLSAC+ LGAL+ G WV  +I K+ V     L  ALI
Sbjct: 207 EALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALI 266

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+AKCG +D A++ F +   R + ++T+ I+GLAM+G   EA+ LFE+M   G+ PD V
Sbjct: 267 DMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGV 326

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
           +++ +L ACSH G V+KG  YF SM +  GI P+++HY CMVD+L R+G ++EA +F+  
Sbjct: 327 SYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVAS 386

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MPI+ + +IW  L+ AC   G  ++ + +   L+ ++  H+  Y+LLS+IYA+ ++ E  
Sbjct: 387 MPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDA 446

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
            ++R+ M +R + ++PG +LIE+   ++EF  GD+SH +++EIY M +E+ +++KK GY 
Sbjct: 447 EQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYR 506

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
             T  V+ D+ EE+KE  +  HSEKLA+AF  L T  G+ +RIVKN+R+C+DCH A K +
Sbjct: 507 EETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLV 566

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK++ R+I +RDR  FHHF++
Sbjct: 567 SKVFKRKIAIRDRKCFHHFEE 587



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 34/187 (18%)

Query: 80  WSAMIGGYARL---GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           ++  I G++R    G    ++ LF +M +  + P+  T   +   C++  A ++G+    
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVD-------------------------------K 165
            + K      V + N++I  ++ CG ++                               +
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILE 176

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           AL LF  M  R  +SW  +I+G A +G+  EA+ALF EM      P+    V +LSACS 
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQ 236

Query: 226 CGLVDKG 232
            G +D G
Sbjct: 237 LGALDHG 243



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 37/188 (19%)

Query: 161 GDVDKALKLF-RSMNGRTIVSWTSVIAGLAMHGRG---LEAVALFEEMLEAGVPPDDVAF 216
           GD+D AL L  R+    T+  + + I G +   R    L +V LF  M    + P++  F
Sbjct: 36  GDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTF 95

Query: 217 VGLLSACSHCGLVDKGREYFD-SMKNDF--------GIIP-------------------- 247
             L   CS+C   D GR++    +KN F         II                     
Sbjct: 96  TFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSE 155

Query: 248 -KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK- 305
             +  +  M+D   R+G + EA     KM  E N I W  +IS     G+ K A ++ + 
Sbjct: 156 LDVVSWNSMIDGCIRNGNILEALSLFSKM-TERNDISWNMMISGYAQNGQPKEALALFRE 214

Query: 306 -RLIGNEP 312
            +++  EP
Sbjct: 215 MQMLDQEP 222


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G+ P+ FT   VL ACA I DL  G++V  A  +      + V    V +Y  C G +  
Sbjct: 646  GMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKC-GEMAK 704

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             R+VFD+M  +D+V+W AM+GGYA  G   +A+DLF  MQ  G+ PD   +   LSACT 
Sbjct: 705  AREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTR 764

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            LGAL++G+     ++      +  L  ALIDM+AKCG   +A  +F+ M  + I+ W ++
Sbjct: 765  LGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAM 824

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I GL M G    A AL  +M ++GV  +D  F+GLL +C+H GL+  GR YF +M   + 
Sbjct: 825  ILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYH 884

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P+IEHYGCMVD+L R+G ++EAH+ +  MP+ AN +I   L+  C      +LAE + 
Sbjct: 885  ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVL 944

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            K+LI  EP +  NYV+LS+IY+   RWE   K+R  M  +G++K+P  + +E + +++EF
Sbjct: 945  KQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEF 1004

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              GDKSH  S +IY+ LDE+G +MK  GY PTT  V+ D+ +E+KE  L  HSEKLAIAF
Sbjct: 1005 RVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAF 1064

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             LL T PG  IR+ KNLRVC+DCH+A K +S+I +REI+VRD +RFH F+D
Sbjct: 1065 NLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRD 1115



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 6/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T P  LK+ + +   L  G+ +H   LK     + HV  +L+ +Y  C G +   
Sbjct: 546 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKC-GLLHRA 604

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFDEM    +V W+A+I  Y   G   +A+ + R    +G+ PD  T V VL+AC  +
Sbjct: 605 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 664

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  G+ V    E++ V +SV +  A +D++ KCG++ KA ++F  M  +  V+W +++
Sbjct: 665 ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 724

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FG 244
            G A +G   EA+ LF  M   G+ PD  A  G LSAC+  G +D GR+    +  D F 
Sbjct: 725 GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 784

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
             P +     ++DM  + G   EA    Q+M  + + I+W  +I      G  K+A ++ 
Sbjct: 785 DNPVLG--TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALV 841

Query: 305 KRL 307
            ++
Sbjct: 842 GQM 844


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/504 (41%), Positives = 313/504 (62%), Gaps = 34/504 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V PN  T   VL ACA   DL  G+ V   + +     D+ + N ++ MY  C G ++ 
Sbjct: 222 NVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKC-GSVDD 280

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLG-------------------------------LS 93
            +K+FDEM ERD  SW+ M+ GYA++G                                 
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340

Query: 94  TDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
            +A+ +F ++Q+S +  PDE+T+V+ LSAC  LGA+++G W+  +I+++ +  +  L ++
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKCG ++KAL++F S+  R +  W+++IAGL MHGRG  A+ LF EM EA V P+
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V F  +L ACSH GLVD+GR +F  M+  +G++P+++HY CMVD+L R+G ++EA E I
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
            +M    +  +W  L+ AC     ++L E  + +L+  EP +    VLLS+IYAK  RWE
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWE 580

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
           K +++R++M    +KK PG + IE +  ++EF+ GD +H  S  IY  L+E+  K+K  G
Sbjct: 581 KVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVG 640

Query: 393 YVPTTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           Y P  S +L  I E+D KE AL+ HSEKLAIAF L+   P  PIR+VKNLR+C DCH+  
Sbjct: 641 YEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFA 700

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           K +S++Y+R+I++RDR+RFHHF+D
Sbjct: 701 KLVSRVYDRDILLRDRYRFHHFRD 724



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 173/325 (53%), Gaps = 35/325 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNKFT+PFV+KA + +    +G +VHG  +K  FG D+++ N+LV  YG+C G + +  +
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGAC-GDLSMAER 182

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F  +S +D VSW++MI  +A+     DA++LF +M+   V P+ +TMV VLSAC     
Sbjct: 183 LFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE G+WV S+IE++ +   + LCNA++DM+ KCG VD A KLF  M  R + SWT ++ G
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302

Query: 188 LA-------------------------------MHGRGLEAVALFEEM-LEAGVPPDDVA 215
            A                                +G+  EA+A+F E+ L     PD+V 
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            V  LSAC+  G +D G      +K + GI+        +VDM  + G +++A E    +
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKALEVFYSV 421

Query: 276 PIEANPIIWRTLISACCARGELKLA 300
             E +  +W  +I+     G  K A
Sbjct: 422 E-ERDVYVWSAMIAGLGMHGRGKAA 445



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 16/292 (5%)

Query: 30  KSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K VH  +L+   F D             S    ++  R +FD++ + +  +W+ +I  YA
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 89  RLGLSTDAIDLFRQ-MQISGVC---PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
               S+D    F   + +   C   P++ T   V+ A ++L A  VG  V     K    
Sbjct: 102 S---SSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFG 158

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
             + + N+L+  +  CGD+  A +LF+ ++ + +VSW S+I+  A      +A+ LF +M
Sbjct: 159 MDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKM 218

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
               V P+ V  VG+LSAC+    ++ GR +  S     GI   +     M+DM  + G 
Sbjct: 219 ERENVMPNSVTMVGVLSACAKKLDLEFGR-WVCSYIERKGIKVDLTLCNAMLDMYTKCGS 277

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHE 315
           V +A +   +MP E +   W  ++      G  K+ +    RL+ N  P+ E
Sbjct: 278 VDDAQKLFDEMP-ERDVFSWTIMLD-----GYAKMGDYDAARLVFNAMPVKE 323


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/470 (46%), Positives = 298/470 (63%), Gaps = 7/470 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T+  VL A    GD+   + V G +       ++   N ++  Y    G + L R+
Sbjct: 167 PNVVTWNAVLTAAFRCGDVEGAQDVFGCMPV----RNLTSWNGMLAGYAKA-GELGLARR 221

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF EM  RD VSWS MI G+A  G   +A   FR++    +  +E+++  VLSAC   GA
Sbjct: 222 VFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGA 281

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIA 186
            E GK +  F+EK        + NALID ++KCG+V  A  +F++M   R+IVSWTS+IA
Sbjct: 282 FEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIA 341

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLAMHG G EA+ LF EM E+GV PD + F+ LL ACSH GLV++G   F  MKN +GI 
Sbjct: 342 GLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIE 401

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P IEHYGCMVD+  R+ R+++A+EFI +MP+  N IIWRTL+ AC   G +++AE +  R
Sbjct: 402 PAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKAR 461

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L   +P +  ++VLLS++YA   +W+  + IR  M +  MKK PG ++IE+D  IY FV 
Sbjct: 462 LAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVA 521

Query: 367 GDKSHHQSKEIYEMLDE-MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
           G+K +  ++E +E L E M R   +AGY P    VL DI EE+KED+++KHSEKLA AF 
Sbjct: 522 GEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFG 581

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + K P G  +RIVKNLRVC DCH+  K ISK+Y  EI+VRDR RFH FKD
Sbjct: 582 IAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKD 631



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 6/224 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   +  N+ +   VL ACA  G    GK +HG V K  F     V N L+  Y  C G
Sbjct: 257 LLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKC-G 315

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            + + R VF  M   R  VSW+++I G A  G   +AI LF +M+ SGV PD IT +++L
Sbjct: 316 NVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLL 375

Query: 120 SACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
            AC+  G +E G  + S ++    +  ++     ++D++ +   + KA +    M     
Sbjct: 376 YACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPN 435

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            + W +++   ++HG  +E   L +  L A + PD+     LLS
Sbjct: 436 AIIWRTLLGACSIHG-NIEMAELVKARL-AEMDPDNSGDHVLLS 477


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/477 (43%), Positives = 309/477 (64%), Gaps = 4/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCE 59
           ML   + P+ +T+  V+KACA +  L LG  VH  V    +  +  VQ  LV  Y  SC 
Sbjct: 99  MLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCT 158

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
               + RKVFDEM +R  ++W++MI GY + GL+++A+++F +M+ SG  PD  T V+VL
Sbjct: 159 P--RVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVL 216

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC+ LG+L++G W+   I    +  +V L  +L++MF++CGDV +A  +F SMN   +V
Sbjct: 217 SACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVV 276

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++I+G  MHG G+EA+ +F  M   GV P+ V +V +LSAC+H GL+++GR  F SM
Sbjct: 277 SWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASM 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELK 298
           K ++G++P +EH+ CMVDM  R G + EA++F++ +  E   P +W  ++ AC       
Sbjct: 337 KQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFD 396

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L   + + LI  EP +  +YVLLS++YA   R ++   +R VM +RG+KK  G + I+++
Sbjct: 397 LGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVE 456

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N  Y F  GDKSH ++ EIY  LDE+  + K AGY P     + ++ EE++E AL  HSE
Sbjct: 457 NRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSE 516

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+KT  G  +RIVKNLR+C DCHSA KFIS + NREI+VRD+ RFHHF++
Sbjct: 517 KLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFRE 573



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 3/234 (1%)

Query: 57  SCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           SC  G I   R++F  +S+ DS  ++++I   +  G S DA+  +R+M  S + P   T 
Sbjct: 52  SCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTF 111

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +V+ AC DL  L +G  V S +       +  +  AL+  +AK      A K+F  M  
Sbjct: 112 TSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQ 171

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R+I++W S+I+G   +G   EAV +F +M E+G  PD   FV +LSACS  G +D G   
Sbjct: 172 RSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWL 231

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            + +    GI   +     +V+M  R G V  A      M  E N + W  +IS
Sbjct: 232 HECIVGT-GIRMNVVLATSLVNMFSRCGDVGRARAVFDSMN-EGNVVSWTAMIS 283


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/475 (44%), Positives = 302/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+  + P   T   VL+ACA + DL+ G+ +H  ++K     DI + NTL+ MY  C G
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC-G 361

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   + FDEM+ +DSVS+SA++ G  + G +  A+ +FR MQ+SG+ PD  TM+ VL 
Sbjct: 362 VIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL+ G     ++  +       +CNALIDM++KCG +  A ++F  M+   IVS
Sbjct: 422 ACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVS 481

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G  +HG G+EA+ LF ++L  G+ PDD+ F+ LLS+CSH GLV +GR +FD+M 
Sbjct: 482 WNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMS 541

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF I+P++EH  CMVD+L R+G + EAH FI+ MP E +  IW  L+SAC     ++L 
Sbjct: 542 RDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELG 601

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E ++K++    P    N+VLLS+IY+   RW+    IR      G+KKIPG + IE++  
Sbjct: 602 EEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGI 661

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD+SH Q  +I   L+E+  +MK+ GY    S V  D+ EE+KE  L  HSEKL
Sbjct: 662 VHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKL 721

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF +L    G PI + KNLRVC DCH+A KF++ I  REI VRD +RFHHFK+
Sbjct: 722 AIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKN 776



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 160/315 (50%), Gaps = 6/315 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PNK+TYPFVLKAC+G+  +  G  +H     F    D+ V   LV  Y  C  
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  +++F  MS RD V+W+AMI G +  GL  DA+ L  QMQ  G+CP+  T+V VL 
Sbjct: 160 LVE-AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
              +  AL  GK +  +  ++  +  V +   L+DM+AKC  +  A K+F  M  R  VS
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W+++I G        EA+ LF++M L+  + P  V    +L AC+    + +GR+     
Sbjct: 279 WSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK-LHCY 337

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G +  I     ++ M  + G + +A  F  +M    + + +  ++S C   G   +
Sbjct: 338 IIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAV 396

Query: 300 AESITK--RLIGNEP 312
           A SI +  +L G +P
Sbjct: 397 ALSIFRMMQLSGIDP 411



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 168/355 (47%), Gaps = 13/355 (3%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           K  Y  +L+AC     L   K +H   LK     D  V + L  +Y SC   + L R++F
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ-VVLARRLF 66

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           DE+     + W+ +I  YA  G    AIDL+  M   GV P++ T   VL AC+ L A+E
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            G  + S  +   +   V +C AL+D +AKCG + +A +LF SM+ R +V+W ++IAG +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGII 246
           ++G   +AV L  +M E G+ P+    VG+L        +  G+    Y      D G++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
                   ++DM  +   +  A +    M +  N + W  +I    A   +K A  +  +
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 307 LIGNEPMHESNYVLLSHIY--AKLLRWEKKTKIREVMDKRG--MKKIPGSTLIEL 357
           +I  + M  +   L S +   AKL    +  K+   + K G  +  + G+TL+ +
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSM 356


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 315/475 (66%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G  P+ FTYP +LKAC  +  +  GK +HG V K     D+ VQN+L++MYG C G
Sbjct: 123 MMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRC-G 181

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            +EL   VF+++  + + SWS+M+   A +G+ ++ + LFR M   + +  +E  MV+ L
Sbjct: 182 EMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC + GAL +G  +  F+ + +   ++ +  +L+DM+ KCG +DKAL +F+ M  R  +
Sbjct: 242 LACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL 301

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +++++I+GLA+HG G  A+ +F +M++ G+ PD V +V +L+ACSH GLV +GR  F  M
Sbjct: 302 TYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEM 361

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             +  + P  EHYGC+VD+L R+G ++EA E IQ +PIE N +IWRT +S C  R  ++L
Sbjct: 362 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIEL 421

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   + L+     +  +Y+L+S++Y++   W+   + R  +  +G+K+ PG +++EL  
Sbjct: 422 GQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKG 481

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + + FV  D+SH + KEIY+ML +M  ++K  GY P  +++LL+++EE+K++ L  HS+K
Sbjct: 482 KTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQK 541

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +AIAF LL TPPG+ I+I +NLR+C+DCH+ TK IS IY REIVVRDR+RFH FK
Sbjct: 542 VAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFK 596



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 11/306 (3%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM---YGSCEGGIELGRKVFDE 71
           ++LK C  I +    K VH   +K           + V     +   E  +     +F  
Sbjct: 35  YLLKRCHNIDEF---KQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRG 91

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           + +  +  ++ MI GY  +    +A+  + +M   G  PD  T   +L ACT L ++  G
Sbjct: 92  IDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREG 151

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K +   + K  +   V + N+LI+M+ +CG+++ +  +F  +  +T  SW+S+++  A  
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211

Query: 192 GRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           G   E + LF  M  E  +  ++   V  L AC++ G ++ G      +  +   +  I 
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-- 308
               +VDM  + G + +A    QKM  + N + +  +IS     GE + A  +  ++I  
Sbjct: 272 QTS-LVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHGEGESALRMFSKMIKE 329

Query: 309 GNEPMH 314
           G EP H
Sbjct: 330 GLEPDH 335


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 305/477 (63%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+ FT+PFV+KACA + +L  G  +HG V+K        V+  L+ MY    G
Sbjct: 126 MRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKF-G 184

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F  M ERD V+W+A+I    + G S+ A+  FR+M ++G+ PD +T+V+ LS
Sbjct: 185 ELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALS 244

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG LE G+ +  F  ++ ++ ++ + NA +DM AKCGD+DKA+ LF  M  R ++S
Sbjct: 245 ACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVIS 304

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           W++VI G A++G   +A+ALF  M   GV P+ V F+ +LSACSH G V++G +YF+ M 
Sbjct: 305 WSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMA 364

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             +D  I P+ EHY CMVD+L RSG ++EA+ FI+ MPIEA+P IW  L+ AC     +K
Sbjct: 365 QSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIK 424

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L + +   L    P   S +VLLS++YA   RW    K+R+ M K+G +K+   + +E +
Sbjct: 425 LGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFN 484

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            EI+    GDKSH QS  I   L+++ ++MK  GY+P T  V  D+ +E+KE  L+ HSE
Sbjct: 485 GEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSE 544

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF+L+   P  PIR++KNLR+C DCH+  K +S+I  REI++RD++RFHHFK+
Sbjct: 545 KLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKN 601



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 4/265 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R++FDEM +     W+ ++ GY + G+   A+ ++ +M+  GV PD  T   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC +L  L  G  +   + K  +     +   L+ M+ K G++  A  LF SM  R +V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W ++IA     G   +A+  F EM  AG+ PD V  V  LSAC H G ++ G E ++  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + + GI   I  +   +DM  + G + +A     +MP + N I W T+I      GE + 
Sbjct: 263 REE-GIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP-QRNVISWSTVIGGYAVNGESEK 320

Query: 300 AESITKRL--IGNEPMHESNYVLLS 322
           A ++  R+   G +P + +   +LS
Sbjct: 321 ALALFSRMKNQGVQPNYVTFLAVLS 345


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/505 (41%), Positives = 309/505 (61%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML++G  P++ T    + AC+ + D++ GK  HG VL+       +V N +++MY  C  
Sbjct: 332 MLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGK 391

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E   K+F  M + D VSW+ MIG   + 
Sbjct: 392 QEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQE 451

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            +  +AI+LFR MQ  G+  D++TMV V SAC  LGAL++ KW+  +I+K+ ++  + L 
Sbjct: 452 SMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLG 511

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DMFA+CGD   A+++F  M  R + +WT+ I  +AM G G  A+ LF+EML+ G+ 
Sbjct: 512 TALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIK 571

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD V FV LL+A SH GLV++G   F SMK+ +GI P+  HYGCMVD+L R+G + EA  
Sbjct: 572 PDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALS 631

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I  M +E N +IW +L++AC     + +A    +R+   +P     +VLLS+IYA   R
Sbjct: 632 LINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGR 691

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+   K+R  + ++G  K+PGS+ IE++ +I+EF  GD+SH +   I  ML E+  +++ 
Sbjct: 692 WDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRD 751

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GYVP  + VLLD+NE++KE  L++HSEKLAIAFAL+ T  G PIR+ KNLR+C+DCHS 
Sbjct: 752 IGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSF 811

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K +SK Y+REI+VRD +RFH F+ 
Sbjct: 812 AKLVSKSYSREIIVRDNNRFHFFQQ 836



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 25/310 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+ FT+PFVL AC     L  G  VHGA++K  F  D+ V+N+L+H YG C G I+ 
Sbjct: 134 GAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGEC-GEIDC 192

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD+MSER+ VSW+++IGGYA+ G   +A+ LF +M   G+ P+ +TMV V+SAC  
Sbjct: 193 MRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAK 252

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L++G+ V + I +  +  +  + NAL+DM+ KCG +DKA K+F     + +V + ++
Sbjct: 253 LQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTI 312

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-----CG------LVDKGR 233
           ++     G   E +A+  EML+ G  PD +  +  +SACS      CG      ++  G 
Sbjct: 313 MSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGL 372

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           E +D++ N             +++M  + G+ + A     +M +    + W +LI+    
Sbjct: 373 EGWDNVCN------------AIINMYMKCGKQEMACRVFDRM-LNKTRVSWNSLIAGFVR 419

Query: 294 RGELKLAESI 303
            G+++ A  I
Sbjct: 420 NGDMESAWKI 429



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 155/327 (47%), Gaps = 36/327 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ PN  T   V+ ACA + DL LG+ V   + + +   +  + N LV MY  C G
Sbjct: 231 MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKC-G 289

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK+FDE  +++ V ++ ++  Y R GL+ + + +  +M   G  PD ITM++ +S
Sbjct: 290 AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVS 349

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC++L  +  GKW   ++ +  +     +CNA+I+M+ KCG  + A ++F  M  +T VS
Sbjct: 350 ACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS 409

Query: 181 WTSVIAGLAMHG-------------------------------RGLEAVALFEEMLEAGV 209
           W S+IAG   +G                                  EA+ LF  M   G+
Sbjct: 410 WNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEA 268
             D V  VG+ SAC + G +D  +     +K     I    H G  +VDM  R G  + A
Sbjct: 470 TADKVTMVGVASACGYLGALDLAKWIHGYIKKK--DIHFDMHLGTALVDMFARCGDPQSA 527

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
            +   KM ++ +   W   I A    G
Sbjct: 528 MQVFNKM-VKRDVSAWTAAIGAMAMEG 553



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 2/233 (0%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           +S++I G++  GL   AI +FRQ+   G  PD  T   VLSACT   AL  G  V   I 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K    R + + N+LI  + +CG++D   ++F  M+ R +VSWTS+I G A  G   EAV+
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF EM+E G+ P+ V  VG++SAC+    +  G +    +  +  +         +VDM 
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI-GELELEVNALMVNALVDMY 285

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312
            + G + +A +   +  ++ N +++ T++S    +G  +   ++   ++ + P
Sbjct: 286 MKCGAIDKARKIFDEC-VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP 337


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/421 (47%), Positives = 283/421 (67%), Gaps = 2/421 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D    NTL+  Y    G +   R +FDEM  R++VSWSAM+ GY + G   +A+ LF +M
Sbjct: 276 DASTFNTLITAYARA-GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM 334

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           Q  GV PD+  +V VL+AC  LG LE GKWV  +++   +  +V L  AL+DM+AKCG++
Sbjct: 335 QADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A+++F+ M  + +++WT++I GLAMHGRG EA+ LF +M   GV PDD+AF+G L AC
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCAC 454

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +H GLVDKGRE FDSM   +GI PKIEHYGCMVD+L R+G + EA E ++KMP++ + +I
Sbjct: 455 THTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALI 514

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L++ C     ++LAE + K  I  EP     YVLL +IYA   R     +IR +M +
Sbjct: 515 WGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMRE 574

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLL 402
           +G+ K PG + +E+   I++F+ GD SH   +EI    DE+  +++ + GYVP   EVLL
Sbjct: 575 KGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLL 634

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI EE+KE+AL++HSEK+AIAFAL+ T    PIRIVKNLRVC+DCH  TK ISK+++  +
Sbjct: 635 DIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTV 694

Query: 463 V 463
           V
Sbjct: 695 V 695



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+      VL ACA +G L  GK VHG +        + +   LV MY  C G ++L
Sbjct: 338 GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKC-GEMQL 396

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF  M E++ ++W+ MI G A  G  ++A++LF QM+  GV PD+I  +  L ACT 
Sbjct: 397 AMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTH 456

Query: 125 LGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G ++ G+ + +S + K  +   +     ++D+ A+ G +++A ++   M  +   + W 
Sbjct: 457 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 516

Query: 183 SVIAGLAMH 191
           +++AG   H
Sbjct: 517 ALMAGCRFH 525


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/453 (45%), Positives = 288/453 (63%), Gaps = 1/453 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
            G L+L   + G  +K        V   L  +Y      I+L R++FDE SE+   +W+A
Sbjct: 318 FGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL-NEIDLARQLFDESSEKTVAAWNA 376

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GYA+ GL+  AI LF++M  +   P+ +T+ ++LSAC  LGAL  GK V   I+ + 
Sbjct: 377 MISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKN 436

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           + +++ +  ALIDM+AKCG++ +A +LF   + +  V+W ++I G  +HG G EA+ LF 
Sbjct: 437 LEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFN 496

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           EML  G  P  V F+ +L ACSH GLV +G E F +M N + I P  EHY CMVD+L R+
Sbjct: 497 EMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRA 556

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           G++++A EFI+KMP+E  P +W TL+ AC    +  LA   ++RL   +P +   YVLLS
Sbjct: 557 GQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLS 616

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           +IY+    + K   +RE + KR + K PG TLIE++   + FVCGD+SH Q+  IY  L+
Sbjct: 617 NIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLE 676

Query: 383 EMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           E+  KM++ GY   T   L D+ EE+KE   N HSEKLAIAF L+ T PGT IRI+KNLR
Sbjct: 677 ELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLR 736

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCH+ATKFISKI  R IVVRD +RFHHFKD
Sbjct: 737 VCLDCHAATKFISKITERVIVVRDANRFHHFKD 769



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 52/363 (14%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIEL 64
           +SP+ FTY F + A     D NLG  +H   +   F  ++ V + LV +Y  C+   +  
Sbjct: 102 LSPDNFTYAFAISASP---DDNLGMCLHAHAVVDGFDSNLFVASALVDLY--CKFSRVAY 156

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVFD+M +RD+V W+ MI G  R     D++ +F+ M   GV  D  T+ TVL A  +
Sbjct: 157 ARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAE 216

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  ++VG  ++    K   +    +   LI +F+KC DVD A  LF  +    +VS+ ++
Sbjct: 217 MQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNAL 276

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL---------------- 228
           I+G + +G    AV  F E+L +G        VGL+   S  G                 
Sbjct: 277 ISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGT 336

Query: 229 -------------------VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
                              +D  R+ FD           +  +  M+    +SG  + A 
Sbjct: 337 ILQPSVSTALTTIYSRLNEIDLARQLFDESSEK-----TVAAWNAMISGYAQSGLTEMAI 391

Query: 270 EFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHI 324
              Q+M       NP+   +++SAC   G L   +S+  +LI ++ + ++ YV   L  +
Sbjct: 392 SLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSV-HQLIKSKNLEQNIYVSTALIDM 450

Query: 325 YAK 327
           YAK
Sbjct: 451 YAK 453



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 158/330 (47%), Gaps = 12/330 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  +  T   VL A A + ++ +G  +    LK  F  D +V   L+ ++  CE 
Sbjct: 195 MVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R +F  + + D VS++A+I G++  G +  A+  FR++ +SG      TMV ++ 
Sbjct: 255 -VDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIP 313

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             +  G L +   ++ F  K        +  AL  ++++  ++D A +LF   + +T+ +
Sbjct: 314 VSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAA 373

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G A  G    A++LF+EM+     P+ V    +LSAC+  G +  G+     +K
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----E 296
           +   +   I     ++DM  + G + EA +    +  E N + W T+I      G     
Sbjct: 434 SK-NLEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLHGYGDEA 491

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           LKL   +    +G +P   S+   LS +YA
Sbjct: 492 LKLFNEMLH--LGFQP---SSVTFLSVLYA 516



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 123/314 (39%), Gaps = 59/314 (18%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA--IDLFRQM-QISGVCPDEITMV 116
           G     R +F  + + D   ++ +I G++    S DA  I  +  + + + + PD  T  
Sbjct: 54  GATRHARALFFSVPKPDIFLFNVLIKGFS---FSPDASSISFYTHLLKNTTLSPDNFTYA 110

Query: 117 TVLSACTD--LG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
             +SA  D  LG  L     V+ F      + ++ + +AL+D++ K   V  A K+F  M
Sbjct: 111 FAISASPDDNLGMCLHAHAVVDGF------DSNLFVASALVDLYCKFSRVAYARKVFDKM 164

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-----------PP----------- 211
             R  V W ++I GL  +    ++V +F++M+  GV           P            
Sbjct: 165 PDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGM 224

Query: 212 -------------DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
                        DD    GL+S  S C  VD  R  F  ++      P +  Y  ++  
Sbjct: 225 GIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRK-----PDLVSYNALISG 279

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRT---LISACCARGELKLAESITKRLI-GNEPMH 314
              +G  + A ++ +++ +    +   T   LI      G L LA  I    +     + 
Sbjct: 280 FSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQ 339

Query: 315 ESNYVLLSHIYAKL 328
            S    L+ IY++L
Sbjct: 340 PSVSTALTTIYSRL 353


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/453 (45%), Positives = 290/453 (64%), Gaps = 1/453 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
            G L+L  S+HG  +K     +  V      +Y      I+L R +FDE  E+  V+W+A
Sbjct: 323 FGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNE-IDLARHLFDESPEKTVVAWNA 381

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GY + G +  AI LF++M  +   P+ +T+ T+LSAC  LG+L  GKWV   I+ + 
Sbjct: 382 MISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSEN 441

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +  ++ +  AL+DM+AKCG++ +A +LF SM+ +  V+W ++I G  +HG G EA+ L+ 
Sbjct: 442 LEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYN 501

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           EML  G  P  V F+ +L ACSH GLV +G E F +M N + I P IEHY CMVD+L RS
Sbjct: 502 EMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRS 561

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           G++++A EFI+KMP+E  P +W TL+ AC    +  +A   ++RL   +P     YVLLS
Sbjct: 562 GQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLS 621

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           +IY+    + K   IR+V+ KR + K PG TLIE++   + FV GD+SH  + +IY  L+
Sbjct: 622 NIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLE 681

Query: 383 EMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           ++  KM++ GY   T   L D+ EE+KE A+N HSEKLAIAF L+ T PG  IRI+KNLR
Sbjct: 682 KLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLR 741

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCH+ATKFISKI  R IVVRD +RFHHFKD
Sbjct: 742 VCLDCHTATKFISKITERVIVVRDANRFHHFKD 774



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 141/288 (48%), Gaps = 3/288 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  +  T   VL A A + +L +G  +    LK  FG   +V   L+ +Y  C G
Sbjct: 200 MVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKC-G 258

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +F  ++  D ++++AMI G+   G +  ++ LFR++  SG      T+V ++ 
Sbjct: 259 DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIP 318

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             +  G L +   +  F  K  +  +  +  A   ++ K  ++D A  LF     +T+V+
Sbjct: 319 LHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA 378

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G   +G    A++LF+EM++    P+ V    +LSAC+  G +  G+     +K
Sbjct: 379 WNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIK 438

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           ++  + P I     +VDM  + G + EA +    M  E N + W T+I
Sbjct: 439 SE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMI 484



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 161/358 (44%), Gaps = 42/358 (11%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIEL 64
           +SP+ FTY F + AC+    L L   +H   +   +G ++ V + LV +Y  C+   +  
Sbjct: 107 LSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLY--CKFSRVVY 161

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVFD M ERD+V W+ MI G  +     D+I LFR+M   GV  D  T+  VL A  +
Sbjct: 162 ARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAE 221

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L+VG  ++    K        +   LI +++KCGDV+ A  LFR +N   ++++ ++
Sbjct: 222 LQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAM 281

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS----------ACSHCGLVDKG-- 232
           I+G   +G    +V LF E+L +G        VGL+           ACS  G   K   
Sbjct: 282 ISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGI 341

Query: 233 ------REYFDSMKNDFGIIPKIEH------------YGCMVDMLCRSGRVKEAHEFIQK 274
                    F ++ N    I    H            +  M+    ++G  + A    ++
Sbjct: 342 ILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKE 401

Query: 275 M---PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAK 327
           M       N +   T++SAC   G L   + +   LI +E +  + YV   L  +YAK
Sbjct: 402 MMKTEFTPNAVTITTILSACAQLGSLSFGKWV-HHLIKSENLEPNIYVSTALVDMYAK 458


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/467 (42%), Positives = 304/467 (65%), Gaps = 1/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +++T+  VL AC G+  L  GK VH  +++  + D+I V + LV MY  C+  I+    V
Sbjct: 274 DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKN-IKSAEAV 332

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F +M+ ++ VSW+AM+ GY + G S +A+  F  MQ  G+ PD+ T+ +V+S+C +L +L
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E G    +      +   + + NAL+ ++ KCG ++ + +LF  ++ +  V+WT++++G 
Sbjct: 393 EEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGY 452

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A  G+  E + LFE ML  G+ PD V F+G+LSACS  GLV+KG + F+SM N+ GI+P 
Sbjct: 453 AQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPI 512

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            +HY CM+D+  R+GR++EA  FI KMP   + I W TL+S+C   G + + +   + L+
Sbjct: 513 QDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLM 572

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             +P + ++YVLLS +YA   +WE+  ++R+ M  +G++K PG + I+  N+++ F   D
Sbjct: 573 ELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADD 632

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           KS+  S +IY  L+++  KM K GYVP  + VL D+ + +K   LN HSEKLAIAF LL 
Sbjct: 633 KSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLF 692

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            PPG PIR+VKNLRVC+DCH+ATK+ISKI NREI+VRD  RFH FKD
Sbjct: 693 IPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKD 739



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 167/319 (52%), Gaps = 34/319 (10%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ T+  +L   +  G + LG+ +HG V+KF F   + V + LV MY S  G I   RKV
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMY-SKMGMISCARKV 200

Query: 69  FDE-------------------------------MSERDSVSWSAMIGGYARLGLSTDAI 97
           FDE                               M ERDS+SW++MI G+ + GL  DAI
Sbjct: 201 FDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAI 260

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           D+FR+M++  +  D+ T  +VL+AC  + AL+ GK V ++I +     ++ + +AL+DM+
Sbjct: 261 DIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMY 320

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
            KC ++  A  +F+ M  + +VSWT+++ G   +G   EAV  F +M + G+ PDD    
Sbjct: 321 CKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLG 380

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++S+C++   +++G + F +     G+I  I     +V +  + G ++++H    ++  
Sbjct: 381 SVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISF 439

Query: 278 EANPIIWRTLISACCARGE 296
           + + + W  L+S     G+
Sbjct: 440 K-DEVTWTALVSGYAQFGK 457



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +YG+ P+ FT   V+ +CA +  L  G   H   L       I V N LV +YG C G
Sbjct: 367 MQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKC-G 425

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   ++F+E+S +D V+W+A++ GYA+ G + + I LF  M   G+ PD++T + VLS
Sbjct: 426 SIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLS 485

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC+  G +E G  + ES I +  +         +ID+F++ G +++A      M      
Sbjct: 486 ACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDA 545

Query: 179 VSWTSVIAGLAMHG 192
           +SW ++++    +G
Sbjct: 546 ISWATLLSSCRFYG 559



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +++  NT++  Y    G +     +FD M  RD VSW+++I GYA  GL   ++  +  M
Sbjct: 74  NLYSWNTILSAYSKL-GRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132

Query: 104 --QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-- 159
                    + IT  T+L   +  G +++G+ +   + K      V + + L+DM++K  
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMG 192

Query: 160 -----------------------------CGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
                                        CG V+ + +LF  M  R  +SWTS+I G   
Sbjct: 193 MISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ 252

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKI 249
           +G   +A+ +F EM    +  D   F  +L+AC     + +G++     ++ D+     I
Sbjct: 253 NGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK--DNI 310

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                +VDM C+   +K A    +KM  + N + W  ++
Sbjct: 311 FVASALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAML 348



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 43/218 (19%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +L  C +       K + S I K +      L N LI  +AK G +  A K+F  M   
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + SW ++++  +  GR  E   LF+ M       D V++  L+S  + CGL+ +  + +
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQSVKAY 129

Query: 237 DSM-KND-----------------------------------FGIIPKIEHYGCMVDMLC 260
           + M KND                                   FG +  +     +VDM  
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISAC--CARGE 296
           + G +  A +   ++P E N +++ TLI     C R E
Sbjct: 190 KMGMISCARKVFDELP-EKNVVMYNTLIMGLMRCGRVE 226


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/493 (42%), Positives = 309/493 (62%), Gaps = 19/493 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK------------FQFGDDIHVQ 48
           M+  G  PN  T   +L ACA +G L+ G  +H   LK               G+D+ V 
Sbjct: 386 MILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--Q 104
           N L+ MY  C    +  R +FD +   ER+ V+W+ MIGGYA+ G S DA+ +F +M  +
Sbjct: 446 NALIDMYSKCRS-FKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISK 504

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGD 162
              V P+  T+  +L AC  L AL +GK + +++ +  +       + N LIDM++KCGD
Sbjct: 505 PYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGD 564

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           VD A  +F SM  R  VSWTS+++G  MHGRG EA+ +F++M +AG  PDD++F+ LL A
Sbjct: 565 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA 624

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH G+VD+G  YFD M+ D+ ++   EHY C++D+L R GR+ +A + IQ+MP+E + +
Sbjct: 625 CSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAV 684

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           IW  L+SAC     ++LAE    +L+  +  ++ +Y L+S+IYA   RW+   +IR++M 
Sbjct: 685 IWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMK 744

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
           K G+KK PG + ++       F  GD+SH  S EIY +L+ +  ++K  GYVP T+  L 
Sbjct: 745 KSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALH 804

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           D+++E+K + L++HSEKLA+A+ LL T PG PIRI KNLRVC DCHSA  +ISKI + EI
Sbjct: 805 DVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEI 864

Query: 463 VVRDRHRFHHFKD 475
           +VRD  RFHHFK+
Sbjct: 865 IVRDSSRFHHFKN 877



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 162/364 (44%), Gaps = 57/364 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+ FT P+ LKAC  +     G+++HG +    F  ++ V N LV MY  C G
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRC-G 198

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPD 111
            +E    VFDE++ +   D +SW++++  + +      A++LF +M +      +    D
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            I++V +L AC  L AL   K + S+  +        +CNALID +AKCG ++ A+K+F 
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 172 SMNGRTIVS-----------------------------------WTSVIAGLAMHGRGLE 196
            M  + +VS                                   W++VIAG A  G   E
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQE 378

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKN----------DFGI 245
           A+  F++M+  G  P+ V  + LLSAC+  G + +G E +  S+K             G 
Sbjct: 379 ALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESIT 304
              +  Y  ++DM  +    K A      +P  E N + W  +I      G+   A  I 
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIF 498

Query: 305 KRLI 308
             +I
Sbjct: 499 SEMI 502



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 152/344 (44%), Gaps = 54/344 (15%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L ACA +  L   K +H   ++     D  V N L+  Y  C G +    KVF+ M  +
Sbjct: 265 ILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKC-GSMNDAVKVFNVMEFK 323

Query: 76  DSVSWSAM-----------------------------------IGGYARLGLSTDAIDLF 100
           D VSW+AM                                   I GYA+ G S +A+D F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV------------NRSVG 148
           +QM + G  P+ +T++++LSAC  LGAL  G  + ++  K+ +               + 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 149 LCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + NALIDM++KC     A  +F S+    R +V+WT +I G A +G   +A+ +F EM+ 
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 207 A--GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-CMVDMLCRSG 263
               V P+      +L AC+H   +  G++    +       P +     C++DM  + G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            V  A      MP + N + W +++S     G  K A  I  ++
Sbjct: 564 DVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 55/321 (17%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           +V  Y +C G  +    V + ++   +V W+ ++  + + G    AI +  +M  +G  P
Sbjct: 89  VVASYLAC-GATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKP 147

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+   L AC +L +   G+ +   I       +V +CNAL+ M+++CG ++ A  +F
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVF 207

Query: 171 RSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEML------EAGVPPDDVAFVGLLS 221
             +  + I   +SW S++A          A+ LF EM             D ++ V +L 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILP 267

Query: 222 ACSH-----------------------------------CGLVDKGREYFDSMKNDFGII 246
           AC+                                    CG ++   + F+ M+      
Sbjct: 268 ACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME-----F 322

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP---IIWRTLISACCARGELKLAESI 303
             +  +  MV    +SG    A E  + M  E  P   I W  +I+    RG  + A   
Sbjct: 323 KDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDA 382

Query: 304 TKRLI--GNEPMHESNYVLLS 322
            +++I  G+EP   +   LLS
Sbjct: 383 FQQMILDGSEPNSVTIISLLS 403


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 289/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  PN  TY  +L ACA  G L   K VH   L      D+ V   LV MY    G
Sbjct: 221 MEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAK-SG 279

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R VFD M  RD VSW+ MIG +A  G   +A DLF QMQ  G  PD I  +++L+
Sbjct: 280 SIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILN 339

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GALE  K +        +   V +  AL+ M++K G +D A  +F  M  R +VS
Sbjct: 340 ACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS 399

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+GLA HG G +A+ +F  M   GV PD V FV +LSACSH GLVD+GR  + +M 
Sbjct: 400 WNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMT 459

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P + H  CMVD+L R+GR+ EA  FI  M ++ +   W  L+ +C   G ++L 
Sbjct: 460 QVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELG 519

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K  +  +P + + YVLLS+IYA+  +W+  + +R +M +RG++K PG + IE+DN+
Sbjct: 520 ELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNK 579

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F+  D SH + KEI E  D++  K+K  GY+P T  VL + N +DKE  +  HSEKL
Sbjct: 580 IHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKL 639

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI + L+ TPPG PIR+ KNLRVC DCH ATK ISK+  REI+VRD +RFHHFKD
Sbjct: 640 AIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKD 694



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 3/310 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  TY  +LKACA +  L  GK VH  +       D+ V   L+ MYG C G
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC-G 178

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R++FD +   D +SW+ MIG YA+ G   +A  L  QM+  G  P+ IT V++L+
Sbjct: 179 SINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GAL+  K V        +   V +  AL+ M+AK G +D A  +F  M  R +VS
Sbjct: 239 ACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS 298

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I   A HGRG EA  LF +M   G  PD + F+ +L+AC+  G ++  ++      
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK-IHRHA 357

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D G+   +     +V M  +SG + +A     +M +  N + W  +IS     G  + A
Sbjct: 358 LDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHGLGQDA 416

Query: 301 ESITKRLIGN 310
             + +R+  +
Sbjct: 417 LEVFRRMTAH 426



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 44/342 (12%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L+ G+  + F Y  VLK C    DL   K VH  ++K +   + HV N L+H+Y  C G 
Sbjct: 20  LQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIEC-GR 78

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  R VFD + ++   SW+AMI GY     + DA+ LFR+M   GV P+  T + +L A
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA 138

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  L AL+ GK V + I    +   V +  AL+ M+ KCG +++A ++F ++    I+SW
Sbjct: 139 CASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC------------------ 223
           T +I   A  G G EA  L  +M + G  P+ + +V +L+AC                  
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALD 258

Query: 224 -----------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
                            +  G +D  R  FD MK     +  +  +  M+      GR  
Sbjct: 259 AGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK-----VRDVVSWNVMIGAFAEHGRGH 313

Query: 267 EAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITK 305
           EA++   +M  E    + I++ ++++AC + G L+  + I +
Sbjct: 314 EAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHR 355



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 44/252 (17%)

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           LS   + L  ++Q  G+  D    V VL  C     L   K V   I K  + ++  + N
Sbjct: 9   LSEAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMN 67

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
            L+ ++ +CG + +A  +F ++  ++  SW ++IAG   H    +A+ LF EM   GV P
Sbjct: 68  NLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQP 127

Query: 212 DDVAFVGLLSACS-----------------------------------HCGLVDKGREYF 236
           +   ++ +L AC+                                    CG +++ R  F
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCA 293
           D++ N       I  +  M+    +SG  KEA+  + +M  E    N I + ++++AC +
Sbjct: 188 DNLMNH-----DIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 294 RGELKLAESITK 305
            G LK  + + +
Sbjct: 243 EGALKWVKRVHR 254


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/454 (44%), Positives = 304/454 (66%), Gaps = 3/454 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P++ T   V+ ACA  G + LG+ VH  +    FG ++ + N L+ +Y  C G
Sbjct: 214 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC-G 272

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ +  +D +SW+ +IGGY  + L  +A+ LF++M  SG  P+++TM+++L 
Sbjct: 273 ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 332

Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC  LGA+++G+W+  +I+K++  V  +  L  +LIDM+AKCGD++ A ++F S+  +++
Sbjct: 333 ACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 392

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW ++I G AMHGR   +  +F  M + G+ PDD+ FVGLLSACSH G++D GR  F S
Sbjct: 393 SSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 452

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+ + PK+EHYGCM+D+L  SG  KEA E I  M +E + +IW +L+ AC   G ++
Sbjct: 453 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 512

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L ES  + LI  EP +  +YVLLS+IYA   RW +    R +++ +GMKK+PG + IE+D
Sbjct: 513 LGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + ++EF+ GDK H +++EIY ML+EM   +++AG+VP TSEVL ++ EE KE AL  HSE
Sbjct: 573 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSE 632

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           KLAIAF L+ T PGT + IVKNLRVC +CH A K
Sbjct: 633 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 38/347 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M+  G+ PN +T+PF+LK+CA       G+ +HG VLK     D++V  +L+ MY   G 
Sbjct: 82  MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 141

Query: 58  CE---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
            E                           G IE  +K+FDE+  +D VSW+AMI GYA  
Sbjct: 142 LEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAET 201

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LF+ M  + V PDE TMVTV+SAC   G++E+G+ V S+I+      ++ + 
Sbjct: 202 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 261

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALID+++KCG+++ A  LF  +  + ++SW ++I G        EA+ LF+EML +G  
Sbjct: 262 NALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 321

Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           P+DV  + +L AC+H G +D GR    Y D  K   G+         ++DM  + G ++ 
Sbjct: 322 PNDVTMLSILPACAHLGAIDIGRWIHVYID--KRLKGVANASSLRTSLIDMYAKCGDIEA 379

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
           AH+    + +  +   W  +I      G    +  I  R+  N  EP
Sbjct: 380 AHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEP 425



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+     VF+ + E + + W+ M  G+A       A+ L+  M   G+ P+  T   +L 
Sbjct: 40  GLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLK 99

Query: 121 ACTDLGALEVGKWVESFIEK-------------------------------QMVNRSVGL 149
           +C    A + G+ +   + K                               +  +R V  
Sbjct: 100 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVS 159

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI  +A  G ++ A K+F  +  + +VSW ++I+G A  G   EA+ LF++M++  V
Sbjct: 160 YTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 219

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+   V ++SAC+  G ++ GR+   S  +D G    ++    ++D+  + G ++ A 
Sbjct: 220 RPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGELETAC 278

Query: 270 EFIQKMPIEANPIIWRTLI 288
              + +P + + I W TLI
Sbjct: 279 GLFEGLPYK-DVISWNTLI 296


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/499 (42%), Positives = 315/499 (63%), Gaps = 34/499 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+ T   VL ACA   DL  G+     + +     ++ + N ++ MY  C G +E  R+
Sbjct: 230 PNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKC-GSLEDARR 288

Query: 68  VFDEMSERDSVSWSAMIGGYARLG-----------------------LST--------DA 96
           +FD+M E+D VSW+ MI GYA++G                       +S+        +A
Sbjct: 289 LFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEA 348

Query: 97  IDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           + +FR++Q++    P+E+T+ + L+AC  LGA+++G W+  +I+KQ +  +  +  +LID
Sbjct: 349 LAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLID 408

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M++KCG ++KAL++F S+  R +  W+++IAGLAMHG G  A+ LF +M E  V P+ V 
Sbjct: 409 MYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVT 468

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F  LL ACSH GLVD+GR +F+ M+  +G++P  +HY CMVD+L R+G ++EA E I+KM
Sbjct: 469 FTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKM 528

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           PI  +  +W  L+ AC   G ++LAE    RL+  +  +   YVLLS+IYAK  +W+  +
Sbjct: 529 PIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVS 588

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
           ++R+ M   G++K PG + IE++  I+EF+ GD SH  S EIY  LDE+  ++K  GYV 
Sbjct: 589 RLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVS 648

Query: 396 TTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
             S +L  + EE  KE ALN HSEKLAIA+ L++  P  PIRIVKNLRVC DCHS  K I
Sbjct: 649 DESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLI 708

Query: 455 SKIYNREIVVRDRHRFHHF 473
           SK+YNR+I++RDR+RFHHF
Sbjct: 709 SKLYNRDILLRDRYRFHHF 727



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 168/325 (51%), Gaps = 35/325 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN +T+PFV+KA   +  L  G+++HG V+K  FG D+ + N+L+H Y S  G ++    
Sbjct: 129 PNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSL-GDLDSAYL 187

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF ++ E+D VSW++MI G+ + G   +A+ LF++M++    P+ +TMV VLSAC     
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRID 247

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE G+W   +IE+  ++ ++ L NA++DM+ KCG ++ A +LF  M  + IVSWT++I G
Sbjct: 248 LEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDG 307

Query: 188 LA-------------------------------MHGRGLEAVALFEEM-LEAGVPPDDVA 215
            A                                +G+  EA+A+F E+ L     P++V 
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVT 367

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
               L+AC+  G +D G      +K   GI         ++DM  + G +++A E    +
Sbjct: 368 LASTLAACAQLGAMDLGGWIHVYIKKQ-GIKLNFHITTSLIDMYSKCGHLEKALEVFYSV 426

Query: 276 PIEANPIIWRTLISACCARGELKLA 300
               +  +W  +I+     G  + A
Sbjct: 427 E-RRDVFVWSAMIAGLAMHGHGRAA 450



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRK 67
           N  T P ++  CA    L   K +H  +L+   F D             S    ++   K
Sbjct: 29  NPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACK 85

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLG 126
           VFD++   +  +W+ +I  +A        + +F QM   S   P+  T   V+ A T++ 
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           +L  G+ +   + K      + + N+LI  ++  GD+D A  +F  +  + IVSW S+I+
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G    G   EA+ LF+ M      P+ V  VG+LSAC+    ++ GR   D ++ + GI 
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERN-GID 264

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
             +     M+DM  + G +++A     KM  E + + W T+I      G+   A  +
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAKVGDYDAARRV 320



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     PN+ T    L ACA +G ++LG  +H  + K     + H+  +L+ MY  C G 
Sbjct: 357 LNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKC-GH 415

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E   +VF  +  RD   WSAMI G A  G    AIDLF +MQ + V P+ +T   +L A
Sbjct: 416 LEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCA 475

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCN---ALIDMFAKCGDVDKALKLFRSMNGRTI 178
           C+  G ++ G+    F + + V   V        ++D+  + G +++A++L   M     
Sbjct: 476 CSHSGLVDEGRLF--FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPS 533

Query: 179 VS-WTSVIAGLAMHG 192
            S W +++    ++G
Sbjct: 534 ASVWGALLGACRIYG 548


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/483 (43%), Positives = 312/483 (64%), Gaps = 12/483 (2%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G V P+K T+PF+LKACA +  L+ G+  H  + K     D++V N+L+H+Y SC 
Sbjct: 116 MLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASC- 174

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + +  KVF++M  R  VSW+ MI  Y + GL  +A+ LF +MQ +   PD  TM +++
Sbjct: 175 GCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ-NSFEPDGYTMQSIV 233

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVG---LCNALIDMFAKCGDVDKALKLFRSMNGR 176
           SAC  +GAL +G W  +++ ++      G   + ++L+DM++KCG +  A ++F +M   
Sbjct: 234 SACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKH 293

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREY 235
            + SW S+I  LAMHGRG  A+  F  ++E     P+ V FVG+LSAC+H G+V  GR+Y
Sbjct: 294 DLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKY 353

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           FD M ND+ I P++EHYGC+VD+L RSG + EA E +  M I+ + +IWR+L+ AC  + 
Sbjct: 354 FDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQN 413

Query: 296 E-LKLAESITKRLIGNEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
             ++L+E +  +++ +E    S  YV+LS +YA   +W     IR+VM   G+ K PG +
Sbjct: 414 AGVELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCS 473

Query: 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED--KED 411
            IE+D   +EF  GD SH + KEIY ++D +  K+++ GY P  S+  + ++E D  K+ 
Sbjct: 474 SIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATM-VDEPDNIKQQ 532

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           +L  HSE+LAIAF LL   PGTP+RI KNLRVCNDCH  TK IS+I+N EI++RDR+RFH
Sbjct: 533 SLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFH 592

Query: 472 HFK 474
           HFK
Sbjct: 593 HFK 595



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 28/291 (9%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR- 89
           S H + L F +   +HV ++L+    +C        +VF+++   +S  W+ +IG  AR 
Sbjct: 53  STHNSSL-FLYSRILHV-SSLIDFDYAC--------RVFNQIDNPNSFMWNTLIGACARS 102

Query: 90  LGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           L     AI++F +M   G V PD+ T   +L AC  + AL  G+   + I K  ++  V 
Sbjct: 103 LDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVY 162

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + N+LI ++A CG +  ALK+F  M  R++VSW  +I      G    A+ LF EM +  
Sbjct: 163 VGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEM-QNS 221

Query: 209 VPPDDVAFVGLLSACSHCGLVDKG--------REYFDSMKNDFGIIPKIEHYGCMVDMLC 260
             PD      ++SAC+  G +  G        R+   +M  D  I         +VDM  
Sbjct: 222 FEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLI------NSSLVDMYS 275

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           + G ++ A +  + MP + +   W ++I A    G  + A     RL+  E
Sbjct: 276 KCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGRGQAALQCFSRLVEME 325


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/468 (44%), Positives = 311/468 (66%), Gaps = 3/468 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  T  FVLKACA +        +H  +++  F  D  +  TL+ +Y    G I+   KV
Sbjct: 104 DALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKV-GEIDSAEKV 162

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEM +RD  SW+A+I G+A+    T+A+ LF++M+I G  P+EI+++  LSAC  LG  
Sbjct: 163 FDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDF 222

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAG 187
           + G+ +  +I+ +  + +  +CN +IDM+AKCG VDKA  +F SM+ R  IV+W ++I  
Sbjct: 223 KEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMA 282

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            AMHG G +A+ LFE+M ++GV PDDV+++ +L AC+H GLV++G   F+SM+N  G+ P
Sbjct: 283 FAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKP 341

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            ++HYG +VD+L R+GR+ EA++ +  MP   + ++W+TL+ A      +++AE+++++L
Sbjct: 342 NVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKL 401

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +     H  ++VLLS++YA   RW    ++RE M  R +KK+PG + IE +  I++F   
Sbjct: 402 VEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNA 461

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           DKSH   +EIY  LDE+  ++K+ GYV  TS VL DI EEDKE+ L  HSEKLA+AF L+
Sbjct: 462 DKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLI 521

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            T  GTPI+++KNLR+C DCH   K ISKIY+REI+VRDR RFH FK+
Sbjct: 522 STSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKE 569



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN+ +    L ACA +GD   G+ +HG +   +F  +  V N ++ MY  C G ++ 
Sbjct: 201 GFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKC-GFVDK 259

Query: 65  GRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              VF+ MS  +D V+W+ MI  +A  G    A++LF +M  SGV PD+++ + VL AC 
Sbjct: 260 AYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACN 319

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWT 182
             G +E G  + + +E   V  +V    +++D+  + G + +A  +  SM     IV W 
Sbjct: 320 HGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQ 379

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAG 208
           +++     H     A  +  +++E G
Sbjct: 380 TLLGASRTHRNVEIAETVSRKLVEMG 405


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/503 (42%), Positives = 306/503 (60%), Gaps = 33/503 (6%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           +  +PNK T  FVL+AC+    +  G  V   V+K  F  D+ V+N L+H+Y +C   +E
Sbjct: 127 FVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTC-CRVE 185

Query: 64  LGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVC--- 109
             ++VFDE+ S RD VSW++MI G+ RLG  + A  LF +M           ISG     
Sbjct: 186 SAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNG 245

Query: 110 ------------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
                             P+E  +V++L+A   LG LE GK + S         +  L  
Sbjct: 246 ELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGT 305

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           AL+DM+AKCG +D++  LF  M  +   SW  +I GLA HG G EA+ALFE+ L  G  P
Sbjct: 306 ALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHP 365

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
            +V F+G+L+ACS  GLV +G+ +F  M + +GI P++EHYGCMVD+L R+G V +A E 
Sbjct: 366 VNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEM 425

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I +MP   +P++W +++ +C   G ++L E I  +LI  +P H  +YV L+ I+A+L +W
Sbjct: 426 INRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKW 485

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E  +K+R +M +R   KI G +LIE +  ++ FV GDK H ++ EIY+ML+ MG ++  A
Sbjct: 486 EDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAA 545

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GY    S VL DI EE+KE+A+ +HSE+LAIAF LL T  G  IRI+KNLRVC DCH  +
Sbjct: 546 GYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVS 605

Query: 452 KFISKIYNREIVVRDRHRFHHFK 474
           K IS ++ REI+VRD  RFHHFK
Sbjct: 606 KIISLVFEREIIVRDGSRFHHFK 628



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  + PN+     +L A A +G L  GK +H      +F     +   LV MY  C G I
Sbjct: 259 EQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKC-GCI 317

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +  R +FD M E+D  SW+ MI G A  GL  +A+ LF +    G  P  +T + VL+AC
Sbjct: 318 DESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTAC 377

Query: 123 TDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVS 180
           +  G +  GK + +   +   +   +     ++D+ ++ G V  A+++   M      V 
Sbjct: 378 SRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVL 437

Query: 181 WTSVIAGLAMHG 192
           W SV+    +HG
Sbjct: 438 WASVLGSCQVHG 449


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/421 (47%), Positives = 283/421 (67%), Gaps = 2/421 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D    NTL+  Y    G +   R +FDEM  R++VSWSAM+ GY + G   +A+ LF +M
Sbjct: 276 DASTFNTLITAYARA-GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM 334

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           Q  GV PD+  +V VL+AC  LG LE GKWV  +++   +  +V L  AL+DM+AKCG++
Sbjct: 335 QADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A+++F+ M  + +++WT++I GLAMHGRG EA+ LF +M   GV PDD+AF+G L AC
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCAC 454

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +H GLVDKGRE FDSM   +GI PKIEHYGCMVD+L R+G + EA E ++KMP++ + +I
Sbjct: 455 THTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALI 514

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L++ C     ++LAE + K  I  EP     YVLL +IYA   R     +IR +M +
Sbjct: 515 WGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMRE 574

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLL 402
           +G+ K PG + +E+   I++F+ GD SH   +EI    DE+  +++ + GYVP   EVLL
Sbjct: 575 KGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLL 634

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI EE+KE+AL++HSEK+AIAFAL+ T    PIRIVKNLRVC+DCH  TK ISK+++  +
Sbjct: 635 DIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTV 694

Query: 463 V 463
           V
Sbjct: 695 V 695



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+      VL ACA +G L  GK VHG +        + +   LV MY  C G ++L
Sbjct: 338 GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKC-GEMQL 396

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF  M E++ ++W+ MI G A  G  ++A++LF QM+  GV PD+I  +  L ACT 
Sbjct: 397 AMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTH 456

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G ++ G+   +S + K  +   +     ++D+ A+ G +++A ++   M  +   + W 
Sbjct: 457 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 516

Query: 183 SVIAGLAMH 191
           +++AG   H
Sbjct: 517 ALMAGCRFH 525


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/470 (43%), Positives = 309/470 (65%), Gaps = 3/470 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTY F LK+C  +      K +HG + K  FG D+++QN L+HMY    G + + R+
Sbjct: 89  PDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEI-GELVIARQ 147

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD MS RD VSW++MI G+    L+ +AI LF++M   GV  +E T+++VL  C D GA
Sbjct: 148 VFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGA 207

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L VG+ V   ++++ ++    +C ALI M++KCG ++ A ++F  +  R +  WT++I G
Sbjct: 208 LSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYG 267

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           LA HG   EA+ LF EM    V PD+   + +LSA  + GLV +G  +F+ ++  + + P
Sbjct: 268 LACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKP 327

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+H+GCMVD+L + G ++EA +FI  MP++ + +IWRTLI AC    + + AE + K L
Sbjct: 328 NIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHL 387

Query: 308 -IGNEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            +     H+S +Y+L S++YA   +W  K ++RE+M+K+G+ K PGS+ IE+D  ++EFV
Sbjct: 388 ELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFV 447

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD  H  +++I+  LD+M  K++K GY P  SEV+L++++E+K   L  HSEKLA+A+ 
Sbjct: 448 MGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKLALAYG 507

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L++T PG+ IRIVKNLR C DCH   K ISK+Y R+I+VRDR RFHHFK+
Sbjct: 508 LIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKN 557



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 3/215 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV  N+ T   VL+ CA  G L++G+ VHG V +       +V   L+HMY  C G
Sbjct: 183 MLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKC-G 241

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD++ +RD   W+AMI G A  G+  +AI+LF +M+   V PDE T++ VLS
Sbjct: 242 CLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLS 301

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           A  + G +  G    + ++K+  +  ++     ++D+ AK G +++A     +M  +   
Sbjct: 302 AYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDA 361

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           V W ++I    +H     A  L + +   G+   D
Sbjct: 362 VIWRTLIWACKVHADTERAERLMKHLELQGMSAHD 396


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/475 (44%), Positives = 301/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+  + P   T   VL+ACA + DL+ G+ +H  ++K     DI + NTL+ MY  C G
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKC-G 361

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   + FD M+ +DSVS+SA++ G  + G +  A+ +FR MQ+SG+ PD  TM+ VL 
Sbjct: 362 VIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL+ G     ++  +       +CNALIDM++KCG +  A ++F  M+   IVS
Sbjct: 422 ACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVS 481

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G  +HG G+EA+ LF ++L  G+ PDD+ F+ LLS+CSH GLV +GR +FD+M 
Sbjct: 482 WNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMS 541

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF I+P++EH  CMVD+L R+G + EAH FI+ MP E +  IW  L+SAC     ++L 
Sbjct: 542 RDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELG 601

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E ++K++    P    N+VLLS+IY+   RW+    IR      G+KKIPG + IE++  
Sbjct: 602 EEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGI 661

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD+SH Q  +I   L+E+  +MK+ GY    S V  D+ EE+KE  L  HSEKL
Sbjct: 662 VHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKL 721

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF +L    G PI + KNLRVC DCH+A KF++ I  REI VRD +RFHHFK+
Sbjct: 722 AIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKN 776



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 159/315 (50%), Gaps = 6/315 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PNK+TYPFVLKAC+G+  +  G  +H     F    D+ V   LV  Y  C  
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  +++F  MS RD V+W+AMI G +  GL  DA+ L  QMQ  G+CP+  T+V VL 
Sbjct: 160 LVE-AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
              +  AL  GK +  +  ++  +  V +   L+DM+AKC  +  A K+F  M  R  VS
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W+++I G        EA+ LF++M L+  + P  V    +L AC+    + +GR+     
Sbjct: 279 WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK-LHCY 337

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G +  I     ++ M  + G + +A  F   M    + + +  ++S C   G   +
Sbjct: 338 IIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAV 396

Query: 300 AESITK--RLIGNEP 312
           A SI +  +L G +P
Sbjct: 397 ALSIFRMMQLSGIDP 411



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 167/355 (47%), Gaps = 13/355 (3%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           K  Y  +L+AC     L   K +H   LK     D  V + L  +Y SC   + L R++F
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ-VVLARRLF 66

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           DE+     + W+ +I  YA  G    AIDL+  M   GV P++ T   VL AC+ L A+E
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            G  + S  +   +   V +C AL+D +AKCG + +A +LF SM+ R +V+W ++IAG +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGII 246
           ++G   +AV L  +M E G+ P+    VG+L        +  G+    Y      D G++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
                   ++DM  +   +  A +    M +  N + W  +I        +K A  +  +
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 307 LIGNEPMHESNYVLLSHIY--AKLLRWEKKTKIREVMDKRG--MKKIPGSTLIEL 357
           +I  + M  +   L S +   AKL    +  K+   + K G  +  + G+TL+ +
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSM 356


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/423 (47%), Positives = 283/423 (66%)

Query: 51   LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
            L  +  +C   +   +++F +++ +  VSW+ MI  Y    +  +A+D+F QM+   V P
Sbjct: 1234 LPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDP 1293

Query: 111  DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
            D I++ +VL AC DL AL +G+ +  ++ ++ +  ++ L NALIDM+AKCG ++ A ++F
Sbjct: 1294 DAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVF 1353

Query: 171  RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
              M  R +VSWTS+I+   M+G+G +AV+LF  M + G+ PD +AFV +LSACSH GL+D
Sbjct: 1354 DQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLD 1413

Query: 231  KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +GR YF  M  +  I+P+IEH+ CMVD+L R+G+V EA+ FI++MP+E N  +W  L+SA
Sbjct: 1414 EGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473

Query: 291  CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350
            C     + +      +L    P     YVLLS+IYAK  RWE  T +R +M  +G+KK+P
Sbjct: 1474 CRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMP 1533

Query: 351  GSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKE 410
            G +  ELDN ++ F+ GD+SH QSK+IYE LD +  KMK+AGYVP T   L D+ EEDKE
Sbjct: 1534 GVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKE 1593

Query: 411  DALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRF 470
              L  HSEKLAIAFA+L T PG+PIRI KNLRVC DCH A K ISKI  REI +RD +RF
Sbjct: 1594 CHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRF 1653

Query: 471  HHF 473
            HHF
Sbjct: 1654 HHF 1656



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 149/307 (48%), Gaps = 36/307 (11%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M  +G+ P+ +TYP VLKA +G  DL +G  +H AV++     ++ V N L+ MYG C  
Sbjct: 1117 MAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 1176

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R V DZM  RD VSW++++ G AR G   DA+++ ++M++ G+ PD  TM ++L 
Sbjct: 1177 LVEACR-VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLP 1235

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A T                           N  +D      +V    ++F  +  +++VS
Sbjct: 1236 AVT---------------------------NTCLD------NVSFVKEMFMKLANKSLVS 1262

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W  +IA    +    EAV +F +M +  V PD ++   +L AC     +  GR   + + 
Sbjct: 1263 WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVV 1322

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                + P +     ++DM  + G ++ A E   +M    + + W ++ISA    G+ + A
Sbjct: 1323 RK-RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISAYGMNGKGRDA 1380

Query: 301  ESITKRL 307
             S+  R+
Sbjct: 1381 VSLFSRM 1387



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 51   LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
            L+  Y  C G     R +FDE+ +++ V ++ MI  Y    L +DA+ +F+ M   G+ P
Sbjct: 1066 LMRAYAVC-GEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDP 1124

Query: 111  DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
            D  T   VL A +    L VG  + + + +  ++ +V + N LI M+ KCG + +A ++ 
Sbjct: 1125 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 1184

Query: 171  RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL-- 228
              M  R +VSW S++AG A +G+  +A+ + +EM   G+ PD      LL A ++  L  
Sbjct: 1185 DZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 1244

Query: 229  VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWR 285
            V   +E F  + N       +  +  M+ +   +    EA +   +M    ++ + I   
Sbjct: 1245 VSFVKEMFMKLANK-----SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 1299

Query: 286  TLISACCARGELKLAESITKRLI 308
            +++ AC     L L   I + ++
Sbjct: 1300 SVLPACGDLSALLLGRRIHEYVV 1322


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 311/475 (65%), Gaps = 18/475 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V  N +T+PF+LKAC+ +  L   + +H  ++K  FG +I+  N+L+++Y S  G
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVY-SKSG 167

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R +FD++ +RD                 T+A++LF +MQ +G+  D + +V+ L 
Sbjct: 168 DIKSARLLFDQVDQRD-----------------TEALNLFHRMQTAGIKLDNVALVSTLQ 210

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG L+ GKW+ ++I+K  +     L   LIDM+AKCGD+++A+++FR M  + +  
Sbjct: 211 ACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSV 270

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+G A+HGRG EA+  F +M  AGV P+ + F G+L+ACSH GLV + +  F+SM+
Sbjct: 271 WTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESME 330

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G  P IEHYGCMVD+L R+G +KEA E I+ MP++ N  IW  L++AC   G L+L 
Sbjct: 331 RIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELG 390

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + I K LI  +P H   Y+ L+ I+A    W +  ++R  M ++G+ K+PG ++I ++  
Sbjct: 391 KQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGT 450

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            +EF+ GD+SH Q KEI  ML+++  ++++ GY P   ++LLD+ +++KE A++ HSEKL
Sbjct: 451 AHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKL 510

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ F L+ T PG  IRIVKNLRVC DCH+  K ISK+Y REI++RDR RFH FKD
Sbjct: 511 AVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKD 565



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 29/302 (9%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+ C+ + +L   + +HG +LK     D+I     L        G +   R VFD +  
Sbjct: 24  LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            ++  W+ MI GY+      +A+ L+  M    V  +  T   +L AC+ + ALE  + +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            + I K      +   N+L+++++K GD+  A  LF  ++ R                  
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT---------------- 184

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYG 253
            EA+ LF  M  AG+  D+VA V  L AC+  G++D+G+     + K++  I P +   G
Sbjct: 185 -EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---G 240

Query: 254 C-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--ACCARGELKLAESITKRLIGN 310
           C ++DM  + G ++EA E  +KM  E    +W  +IS  A   RG   L   +  +  G 
Sbjct: 241 CVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGV 299

Query: 311 EP 312
           EP
Sbjct: 300 EP 301


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/475 (43%), Positives = 292/475 (61%), Gaps = 21/475 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE  + PN+ T   ++  C  +G L+LGK  H  +L+  FG  + +   L+ MYG C G
Sbjct: 283 MLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKC-G 341

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +F+ + ++D   WS +I  YA +       +LF +M  + V P+ +TMV++LS
Sbjct: 342 QVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLS 401

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C + GAL++GKW  ++I +  +   V L  ALI+M+AKCGDV  A  LF     R I  
Sbjct: 402 LCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRM 461

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++AG +MHG G EA+ LF EM   GV P+D+ FV +  ACSH GL            
Sbjct: 462 WNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL------------ 509

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                   +EHYGC+VD+L R+G + EAH  I+ MP+  N IIW  L++AC     L L 
Sbjct: 510 --------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALG 561

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++++  +P +    VL S+IYA   RW   T +RE M   GMKK PG + IE+   
Sbjct: 562 EVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGS 621

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GDK+  Q+ ++YEM+ EM  K++++GY P T+ VLL+I+EE+KE AL+ HSEKL
Sbjct: 622 VHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKL 681

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A AF L+ T PGTPIRIVKNLR+C+DCH+ATK +SKIY R I+VRDR+RFHHF +
Sbjct: 682 ATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSE 736



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 152/285 (53%), Gaps = 7/285 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F  P +LKACA     +LG+ +HG   K  F  D+ V N L++MY  C G +   R V
Sbjct: 87  DNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKC-GCLVSARLV 145

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M ERD VSW+ M+G Y R     +A+ L R+MQ  GV    + ++++++   +L  +
Sbjct: 146 FDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDM 205

Query: 129 EVGKWVESFIEKQMVNR--SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           + G+ V  +I + + +    V +  ALIDM+ K G +  A +LF  ++ R++VSWT +IA
Sbjct: 206 KSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIA 265

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGI 245
           G     R  E    F  MLE  + P+++  + L++ C   G +D G+ +    ++N FG+
Sbjct: 266 GCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGM 325

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              +     ++DM  + G+V  A      +  + +  IW  LISA
Sbjct: 326 --SLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 143/275 (52%), Gaps = 9/275 (3%)

Query: 25  DLNLGKSVHGAVLKFQFGDD---IHVQNTLVHMYGSCEGG-IELGRKVFDEMSERDSVSW 80
           D+  G++VHG +++   GD+   + +   L+ MY  C+GG +   +++FD +S+R  VSW
Sbjct: 204 DMKSGRAVHGYIVR-NVGDEKMEVSMTTALIDMY--CKGGCLASAQRLFDRLSKRSVVSW 260

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           + MI G  R     +    F +M    + P+EIT++++++ C  +G L++GKW  +++ +
Sbjct: 261 TVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLR 320

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
                S+ L  ALIDM+ KCG V  A  LF  +  + +  W+ +I+  A      +   L
Sbjct: 321 NGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNL 380

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
           F EML   V P++V  V LLS C+  G +D G+ +  +  N  G+   +     +++M  
Sbjct: 381 FVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGK-WTHAYINRHGLEVDVILETALINMYA 439

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + G V  A     +  ++ +  +W T+++     G
Sbjct: 440 KCGDVTIARSLFNE-AMQRDIRMWNTMMAGFSMHG 473


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/476 (42%), Positives = 308/476 (64%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+  +  +  FV++    I  L  G+ VH  +L      D  +   L+ +Y  C+ 
Sbjct: 15  MRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLMDLYSLCDK 74

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTV 118
           G E   KVFDEM +RD+++W+ +I  Y R   + D + +F  M     G  PD++T + +
Sbjct: 75  GSE-ACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLL 133

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC +LGALE G+ V   I ++  + +  LCN+LI M+++ G++DKA  +F+ M+ + +
Sbjct: 134 LQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNV 193

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W+++I+GLAM+G G EA+  FEEML+ GV PDD+ F G+LSACS+CGLVDKG   F  
Sbjct: 194 VTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFAR 253

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  +FGI+P I HYGCMVD+L R+G++ +A++ I  M ++ +  IWRTL+ AC     + 
Sbjct: 254 MSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVI 313

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E + + LI  +     +YVLL ++Y+ +  W+K T++R+ M ++G++  P S+ IEL 
Sbjct: 314 LGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTTPASSSIELK 373

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +++EFV  D SH Q  EIYEMLDE+ +++K AGYV   +  L +++ E+K   L+ HSE
Sbjct: 374 GKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSE 433

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLAIAF +L TPPGT IRI KNLR+C DCH+  K +S +YNR++++ D  RFHHF+
Sbjct: 434 KLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTRFHHFR 489


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/474 (42%), Positives = 300/474 (63%), Gaps = 1/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M E G   N+ T     KA  G+  L  GK +   V+K  F  D+ V + ++ MY  C G
Sbjct: 1100 MQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKC-G 1158

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R++F+E+   D V+W+ MI G    G    A+  +  M++S V PDE T  T++ 
Sbjct: 1159 EMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVK 1218

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC+ L ALE G+ + +   K        +  +L+DM+AKCG+++ A  LF+  N   I S
Sbjct: 1219 ACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIAS 1278

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I GLA HG   EA+  FEEM   GV PD V F+G+LSACSH GLV +  E F SM+
Sbjct: 1279 WNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQ 1338

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              +GI P+IEHY C+VD L R+GR++EA + I  MP EA+  ++RTL++AC  + + +  
Sbjct: 1339 KIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETG 1398

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            + + ++L+  EP   + YVLLS++YA   +WE     R +M K  +KK PG + ++L N+
Sbjct: 1399 KRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNK 1458

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ FV GD+SH ++  IY  ++ + +++++ GY+P T   L+D+ EEDKE +L  HSEKL
Sbjct: 1459 VHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKL 1518

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            AIA+ L+KTPP T +R++KNLRVC DCH+A K+ISK++ RE+V+RD +RFHHF+
Sbjct: 1519 AIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFR 1572



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 144/276 (52%), Gaps = 5/276 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
            +L  G+ P++FT   VL+AC+ +G   +L   +H   +K     D  V  TL+ +Y S  
Sbjct: 998  LLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVY-SKS 1056

Query: 60   GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            G +E    +F      D  SW+AM+ GY   G    A+ L+  MQ SG   ++IT+    
Sbjct: 1057 GKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAA 1116

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             A   L  L+ GK +++ + K+  N  + + + ++DM+ KCG+++ A ++F  +     V
Sbjct: 1117 KAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDV 1176

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
            +WT++I+G   +G+   A+  +  M  + V PD+  F  L+ ACS    +++GR+ + ++
Sbjct: 1177 AWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANT 1236

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            +K +    P +     +VDM  + G +++A    ++
Sbjct: 1237 VKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKR 1270



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 26/308 (8%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+   V+ +  T+  +L   AG+  L LGK +HG V++      + V N L++MY    G
Sbjct: 897  MINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKT-G 955

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   R VF +M+E D VSW+ MI G A  GL   ++ +F  +   G+ PD+ T+ +VL 
Sbjct: 956  SVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLR 1015

Query: 121  ACTDLG------------ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            AC+ LG            A++ G  ++SF+              LID+++K G +++A  
Sbjct: 1016 ACSSLGGGCHLATQIHACAMKAGVVLDSFVS-----------TTLIDVYSKSGKMEEAEF 1064

Query: 169  LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
            LF + +G  + SW +++ G  + G   +A+ L+  M E+G   + +       A      
Sbjct: 1065 LFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVG 1124

Query: 229  VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            + +G++   ++    G    +     ++DM  + G ++ A     ++P   + + W T+I
Sbjct: 1125 LKQGKQ-IQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMI 1182

Query: 289  SACCARGE 296
            S C   G+
Sbjct: 1183 SGCVENGQ 1190



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 132/275 (48%), Gaps = 6/275 (2%)

Query: 76   DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            D ++W+  +  + + G + +A+D F  M  S V  D +T V +LS    L  LE+GK + 
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 136  SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
              + +  +++ V + N LI+M+ K G V +A  +F  MN   +VSW ++I+G A+ G   
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 196  EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
             +V +F ++L  G+ PD      +L ACS  G          +     G++        +
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 256  VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
            +D+  +SG+++EA EF+       +   W  ++      G+    +++   ++  E    
Sbjct: 1050 IDVYSKSGKMEEA-EFLFVNQDGFDLASWNAMMHGYIVSGDFP--KALRLYILMQESGER 1106

Query: 316  SNYVLLSH---IYAKLLRWEKKTKIREVMDKRGMK 347
            +N + L++       L+  ++  +I+ V+ KRG  
Sbjct: 1107 ANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFN 1141



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 28/291 (9%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           VS  + T   V K C      +  +S+HG  +K     D+ V   LV++Y    G I   
Sbjct: 723 VSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKF-GRIREA 781

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD M  RD V W+ M+  Y   GL  +A+ LF +   +G+ PD++T+ T+       
Sbjct: 782 RVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL------- 834

Query: 126 GALEVGKWVESFIEKQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
               V K  ++ +E Q+   ++ G                K        +G  +++W   
Sbjct: 835 --ARVVKSKQNVLEWQLKQLKAYGT---------------KLFMYDDDDDGSDVIAWNKT 877

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           ++     G   EAV  F +M+ + V  D + FV +LS  +    ++ G++    +    G
Sbjct: 878 LSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRS-G 936

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +   +    C+++M  ++G V  A     +M  E + + W T+IS C   G
Sbjct: 937 LDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EVDLVSWNTMISGCALSG 986



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P  F+   +L+      DL LGK  H  +L      D  + N L+ MY  C G +   RK
Sbjct: 627 PQWFS---ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKC-GSLSSARK 682

Query: 68  VFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +FD    + RD V+W+A++  +A    + D   LFR ++ S V     T+  V   C   
Sbjct: 683 LFDTTPDTSRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLS 740

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +    + +  +  K  +   V +  AL++++AK G + +A  LF  M  R +V W  ++
Sbjct: 741 ASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMM 800

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
                 G   EA+ LF E    G+ PDDV    L
Sbjct: 801 KAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 300/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P   +    L ACA +GDL  G+ VH  + + + G D+ V N+L+ MY  C+ 
Sbjct: 335 MLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKR 394

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VF  +  +  V+W+AMI GYA+ G   +A++LF +MQ   + PD  T+V+V++
Sbjct: 395 -VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT 453

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  DL      KW+     + +++++V +C ALID  AKCG +  A KLF  M  R +++
Sbjct: 454 ALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   +G G EA+ LF EM    V P+++ F+ +++ACSH GLV++G  YF+SMK
Sbjct: 514 WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++G+ P ++HYG MVD+L R+GR+ +A +FIQ MP++    +   ++ AC     ++L 
Sbjct: 574 ENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELG 633

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     L   +P     +VLL+++YA    W+K  ++R  M+K+G++K PG +L+EL NE
Sbjct: 634 EKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNE 693

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  +H QSK IY  L+ +G +MK AGYVP T+ +  D+ E+ KE  L+ HSE+L
Sbjct: 694 VHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERL 752

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T  GT I I KNLRVC DCH ATK+IS +  REI+VRD  RFHHFK+
Sbjct: 753 AIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKN 807



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 175/345 (50%), Gaps = 11/345 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++L+      DL  G+ +HG V+   F  ++     +V++Y  C   IE  
Sbjct: 138 VMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQ-IEDA 196

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+F+ M +RD VSW+ ++ GYA+ G +  A+ +  QMQ +G  PD IT+V+VL A  DL
Sbjct: 197 YKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADL 256

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +G+ +  +  +      V +  A++D + KCG V  A  +F+ M+ R +VSW ++I
Sbjct: 257 KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMI 316

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A +G   EA A F +ML+ GV P +V+ +G L AC++ G +++GR Y   + ++  I
Sbjct: 317 DGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR-YVHRLLDEKKI 375

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     ++ M  +  RV  A      +      + W  +I      G +  A ++  
Sbjct: 376 GFDVSVMNSLISMYSKCKRVDIAASVFGNLK-HKTVVTWNAMILGYAQNGCVNEALNLFC 434

Query: 306 RLIGNEPMHESNYVLLSHIYA-------KLLRWEKKTKIREVMDK 343
            +  ++ +   ++ L+S I A       +  +W     IR +MDK
Sbjct: 435 EMQSHD-IKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDK 478



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P+  T   VL A A +  L +G+S+HG   +  F   ++V   ++  Y  C G
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKC-G 292

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VF  MS R+ VSW+ MI GYA+ G S +A   F +M   GV P  ++M+  L 
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH 352

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +LG LE G++V   ++++ +   V + N+LI M++KC  VD A  +F ++  +T+V+
Sbjct: 353 ACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVT 412

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC----------------- 223
           W ++I G A +G   EA+ LF EM    + PD    V +++A                  
Sbjct: 413 WNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAI 472

Query: 224 ------------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                             + CG +   R+ FD M+    I      +  M+D    +G  
Sbjct: 473 RTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHG 527

Query: 266 KEAHEFIQKM---PIEANPIIWRTLISACCARG 295
           +EA +   +M    ++ N I + ++I+AC   G
Sbjct: 528 REALDLFNEMQNGSVKPNEITFLSVIAACSHSG 560



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 148/332 (44%), Gaps = 11/332 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ C  + +L+    +   ++K  F ++   Q  L+ ++       E  R VF+ +  +
Sbjct: 50  LLELCTSLKELH---QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAAR-VFEPVEHK 105

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
             V +  M+ GYA+     DA+  + +M+   V P       +L    +   L  G+ + 
Sbjct: 106 LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             +       ++    A+++++AKC  ++ A K+F  M  R +VSW +V+AG A +G   
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGC 254
            AV +  +M EAG  PD +  V +L A +    +  GR     + +  F  +  +     
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA--TA 283

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEP 312
           M+D   + G V+ A    + M    N + W T+I      GE + A +   +++  G EP
Sbjct: 284 MLDTYFKCGSVRSARLVFKGMS-SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEP 342

Query: 313 MHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
            + S    L H  A L   E+   +  ++D++
Sbjct: 343 TNVSMMGAL-HACANLGDLERGRYVHRLLDEK 373


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 304/470 (64%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   A   D++ GK +HG  ++     +++V ++L+ MY  C   ++  
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVD-S 354

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  ++ERD +SW+++I G  + GL  + +  FRQM ++ + P   +  +++ AC  L
Sbjct: 355 YRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHL 414

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  +I +   + ++ + ++L+DM+AKCG++  A ++F  M  R +VSWT++I
Sbjct: 415 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMI 474

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG  L+A+ LFE+M   G+ P+ VAF+ +L+ACSH GLVD+  +YF+SM  DFGI
Sbjct: 475 MGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGI 534

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P +EHY  + D+L R+GR++EA++FI  MPI     +W TL+SAC     + +AE +  
Sbjct: 535 APGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVAN 594

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  +P +   Y+LL++IY+   RW++  K R  + + G++K P  + IE+ N++Y F+
Sbjct: 595 RILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFM 654

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH   ++I E ++ +   M+K GYVP TSEV  D+ EE K+  +  HSE+LAI F 
Sbjct: 655 AGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFG 714

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++ TP GT IR+ KNLRVC DCH+ATKFISKI  REIVVRD  RFHHFK+
Sbjct: 715 IINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKN 764



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 2/230 (0%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RK+F+ M E+D VSW+ +I G AR GL  + + + R+M  + + PD  T+ +VL    + 
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  GK +     +Q ++  V + ++LIDM+AKC  V  + ++F  +  R  +SW S+I
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG   +G   E +  F +ML A + P   +F  ++ AC+H   +  G++    +  + G 
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GF 432

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              I     +VDM  + G ++ A +   +M +  + + W  +I  C   G
Sbjct: 433 DENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHG 481



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P  +++  ++ ACA +  L+LGK +HG + +  F ++I + ++LV MY  C G
Sbjct: 392 MLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKC-G 450

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R++FD M  RD VSW+AMI G A  G + DAI+LF QM+  G+ P+ +  + VL+
Sbjct: 451 NIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLT 510

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC+  G + E  K+  S      +   V    A+ D+  + G +++A      M  G T 
Sbjct: 511 ACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTG 570

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
             W ++++   +H     A  +   +LE   P +  A++ L
Sbjct: 571 SVWATLLSACRVHKNVDMAEKVANRILEVD-PKNTGAYILL 610



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 35/306 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+   +P VLKACA + DLNLG+S+HG +++     D++  N L++MY     
Sbjct: 99  MLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 158

Query: 61  GIELGR------KVFDEMSERDSV--SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112
             + GR      +V DEM+ER     + S ++G   R     +A +              
Sbjct: 159 LKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNY------------- 205

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN--ALIDMFAKCGDVDKALKLF 170
              V+  S   +   LE+        + +   R +  CN    I   +    VD   K+F
Sbjct: 206 --DVSCRSREFEAQVLEID------YKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIF 257

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  + +VSW ++IAG A +G   E + +  EM  A + PD      +L   +    + 
Sbjct: 258 EMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDIS 317

Query: 231 KGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           KG+E    S++   G+  ++     ++DM  +  RV +++  +  +  E + I W ++I+
Sbjct: 318 KGKEIHGCSIRQ--GLDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGISWNSIIA 374

Query: 290 ACCARG 295
            C   G
Sbjct: 375 GCVQNG 380



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 128/305 (41%), Gaps = 40/305 (13%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F+ +    +++W ++I  Y   GL   ++  F  M  SG+ PD     +VL AC  L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L +G+ +  +I +  ++  +   NAL++M++K   + K+        GR  +  + V+ 
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKS--------GRQRLGASQVLD 174

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
            +    R +   ++   +   G    D+       +C       + RE F++   +    
Sbjct: 175 EMTERTRSVRTASVL--VGNQGRKVSDIEAFNYDVSC-------RSRE-FEAQVLEIDYK 224

Query: 247 PKIEH-------YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           P+ E+        G  +  +  S  V    +  + MP E + + W T+I+     G    
Sbjct: 225 PRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMP-EKDLVSWNTIIAGNARNG--LY 281

Query: 300 AESITK-RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE-L 357
            E++T  R +G   +   ++ L S +            I E +D    K+I G ++ + L
Sbjct: 282 GETLTMVREMGGANLKPDSFTLSSVL----------PLIAENVDISKGKEIHGCSIRQGL 331

Query: 358 DNEIY 362
           D E+Y
Sbjct: 332 DAEVY 336


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/420 (47%), Positives = 281/420 (66%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
            +C   +   +++F +++ +  VSW+ MI  Y    +  +A+D+F QM+   V PD I++
Sbjct: 250 NTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISI 309

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +VL AC DL AL +G+ +  ++ ++ +  ++ L NALIDM+AKCG ++ A ++F  M  
Sbjct: 310 ASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 369

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R +VSWTS+I+   M+G+G +AV+LF  M + G+ PD +AFV +LSACSH GL+D+GR Y
Sbjct: 370 RDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYY 429

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F  M  +  I+P+IEH+ CMVD+L R+G+V EA+ FI++MP+E N  +W  L+SAC    
Sbjct: 430 FKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYS 489

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
            + +      +L    P     YVLLS+IYAK  RWE  T +R +M  +G+KK+PG +  
Sbjct: 490 NMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNF 549

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           ELDN ++ F+ GD+SH QSK+IYE LD    KMK+AGYVP T   L D+ EEDKE  L  
Sbjct: 550 ELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAV 609

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAFA+L T PG+PIRI KNLRVC DCH A K ISKI  REI +RD +RFHHF +
Sbjct: 610 HSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYN 669



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 149/307 (48%), Gaps = 36/307 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+ +TYP VLKA +G  DL +G  +H AV++     ++ V N L+ MYG C  
Sbjct: 128 MAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 187

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R V D+M  RD VSW++++ G AR G   DA+++ ++M++ G+ PD  TM ++L 
Sbjct: 188 LVEACR-VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLP 246

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T                           N  +D      +V    ++F  +  +++VS
Sbjct: 247 AVT---------------------------NTCLD------NVSFVKEMFMKLANKSLVS 273

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IA    +    EAV +F +M +  V PD ++   +L AC     +  GR   + + 
Sbjct: 274 WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVV 333

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               + P +     ++DM  + G ++ A E   +M    + + W ++ISA    G+ + A
Sbjct: 334 RK-RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISAYGMNGKGRDA 391

Query: 301 ESITKRL 307
            S+  R+
Sbjct: 392 VSLFSRM 398



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 23/313 (7%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           L+  Y  C G     R +FDE+ +++ V ++ MI  Y    L +DA+ +F+ M   G+ P
Sbjct: 77  LMRAYAVC-GEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDP 135

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T   VL A +    L VG  + + + +  ++ +V + N LI M+ KCG + +A ++ 
Sbjct: 136 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 195

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL-- 228
             M  R +VSW S++AG A +G+  +A+ + +EM   G+ PD      LL A ++  L  
Sbjct: 196 DQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 255

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWR 285
           V   +E F  + N       +  +  M+ +   +    EA +   +M    ++ + I   
Sbjct: 256 VSFVKEMFMKLANK-----SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 310

Query: 286 TLISACCARGELKLAESI-----TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
           +++ AC     L L   I      KRL  N  +  +    L  +YAK    E     REV
Sbjct: 311 SVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENA----LIDMYAKCGCLEYA---REV 363

Query: 341 MDKRGMKKIPGST 353
            D+   + +   T
Sbjct: 364 FDQMKFRDVVSWT 376


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/477 (43%), Positives = 307/477 (64%), Gaps = 6/477 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSC 58
           M +  V P+      VL+A   + DL  GKS+HG V+K   +F  D+ +  +L  MY  C
Sbjct: 261 MRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYAKC 318

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G + + R  FD+M   + + W+AMI GYA+ G + +A+ LF++M    +  D IT+ + 
Sbjct: 319 -GQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSA 377

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC  +G+L++ KW+  +I K      V +  ALIDMFAKCG VD A ++F     + +
Sbjct: 378 ILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDV 437

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W+++I G  +HGRG +A+ LF  M +AGV P+DV FVGLL+AC+H GLV++G E F S
Sbjct: 438 VVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHS 497

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  +GI  + +HY C+VD+L RSG + EA++FI  MPIE    +W  L+ AC     + 
Sbjct: 498 MKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVT 556

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E   ++L   +P +  +YV LS++YA    W+   K+R +M ++G+ K  G +LIE++
Sbjct: 557 LGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEIN 616

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            ++  F  GDKSH + KEI+E L+ + R++K+AG++P    VL D+N+E+KE+ L  HSE
Sbjct: 617 GKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSE 676

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIA+ L+ T PGT +RI KNLR C +CHSATK ISK+ NREIVVRD +RFHHFK+
Sbjct: 677 RLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKN 733



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 157/293 (53%), Gaps = 13/293 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+P+ FT P VLKAC+G+  L +GK VHG + +  F  D+ VQN LV +Y  C G
Sbjct: 160 MQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKC-G 218

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF+ + +R+ VSW++MI GY + GL  +A+ +F QM+   V PD I +V+VL 
Sbjct: 219 RVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLR 278

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A TD+  LE GK +   + K  +     L  +L  M+AKCG V  A   F  M    ++ 
Sbjct: 279 AYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMM 338

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           W ++I+G A +G   EAV LF+EM+   +  D +     + AC+  G +D  +   D + 
Sbjct: 339 WNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYIN 398

Query: 240 ----KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
               +ND  +         ++DM  + G V  A E   +  ++ + ++W  +I
Sbjct: 399 KTEYRNDVFV------NTALIDMFAKCGSVDLAREVFDRT-LDKDVVVWSAMI 444



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 43/280 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I   RKVFDE  E     W+A+I GY+      DAI+++ +MQ SGV PD  T+  VL
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ +  LEVGK V   I +      V + N L+ ++AKCG V++A  +F  ++ R IV
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV 236

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------------- 224
           SWTS+I+G   +G  +EA+ +F +M +  V PD +A V +L A +               
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296

Query: 225 --------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
                                CG V   R +FD M+     IP +  +  M+    ++G 
Sbjct: 297 VKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQME-----IPNVMMWNAMISGYAKNGY 351

Query: 265 VKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAE 301
             EA    Q+M    I  + I  R+ I AC   G L LA+
Sbjct: 352 TNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAK 391


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/470 (43%), Positives = 299/470 (63%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN+FT+  VL+A A I  L+L K++HG  LK     D+ V N L+  Y  C G IE  
Sbjct: 244 VIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKC-GCIEQS 302

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++F+ +S+R+ VSW+ +I  Y +LG    A+ LF  M    V   E+T  ++L AC  L
Sbjct: 303 MELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATL 362

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            ALE+G  V     K +  + V + NALIDM+AKCG +  A  +F  ++ R  VSW ++I
Sbjct: 363 AALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAII 422

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G +MHG G+EA+ +F  M E    PD++ FVG+LSACS+ G +D+G++YF SMK D+GI
Sbjct: 423 CGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGI 482

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P +EHY CMV ++ RSG + +A +FI+ +P E + +IWR L+ AC    +++L     +
Sbjct: 483 EPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQ 542

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  EP  E+++VLLS+IYA+  RW     +R+ M ++G+KK PG + IE    ++ F 
Sbjct: 543 RVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFT 602

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D SH   K I  ML+ +  K +KAGY P  + VLLD+ +++KE  L  HSE+LA+AF 
Sbjct: 603 VADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFG 662

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L++ P G PIRI+KNLR+C DCHS  K ISKI  R+I+VRD +RFHHF++
Sbjct: 663 LVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFEN 712



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 156/285 (54%), Gaps = 5/285 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT+  VLKAC G+ + + GK+VH +VLK  +  D++V   L+ +Y  C G  + 
Sbjct: 142 GFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRC-GDNDD 200

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F +M + D + WS MI  +A+ G S  A+++F QM+ + V P++ T  +VL A  D
Sbjct: 201 AWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASAD 260

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           + +L++ K +     K  ++  V + NAL+  +AKCG ++++++LF +++ R  VSW ++
Sbjct: 261 IESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTI 320

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I      G G  A++LF  ML   V   +V +  +L AC+    ++ G + +  + K  +
Sbjct: 321 IVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIY 380

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           G    +     ++DM  + G +K+A  F+  M    + + W  +I
Sbjct: 381 G--QDVAVGNALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWNAII 422



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 5/301 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F +  VLK    +    LG+ VHG VLK  +G +  +   L+  Y S  G + + R+V
Sbjct: 45  NPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAY-SVSGCVSMAREV 103

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDE+S +D VSW+ MI  YA     ++A++ F QM+++G  P+  T   VL AC  L   
Sbjct: 104 FDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNF 163

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           + GK V   + K    R + +   L++++ +CGD D A + F  M    ++ W+ +I+  
Sbjct: 164 DAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRF 223

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIP 247
           A  G+  +A+ +F +M  A V P+   F  +L A +    +D  +  +  ++K   G+  
Sbjct: 224 AQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKA--GLST 281

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +     ++    + G ++++ E  + +  + N + W T+I +    G+ + A S+   +
Sbjct: 282 DVFVSNALMACYAKCGCIEQSMELFEALS-DRNDVSWNTIIVSYVQLGDGERALSLFSNM 340

Query: 308 I 308
           +
Sbjct: 341 L 341



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML Y V   + TY  +L+ACA +  L LG  VH    K  +G D+ V N L+ MY  C G
Sbjct: 340 MLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKC-G 398

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R +FD +  RD VSW+A+I GY+  GL  +AI +F  M+ +   PDE+T V VLS
Sbjct: 399 SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLS 458

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC++ G L+ GK +  S  +   +   +     ++ +  + G++D+A+K    +    ++
Sbjct: 459 ACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSV 518

Query: 179 VSWTSVIAGLAMH 191
           + W +++    +H
Sbjct: 519 MIWRALLGACVIH 531



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 33/269 (12%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFDEM ER++VS+  +I GYA+     +A +LF ++   G   +     TVL     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
            E+G+ V   + K     +  +  ALID ++  G V  A ++F  ++ + +VSWT +IA 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-----------SHCGLVDKGRE-- 234
            A +    EA+  F +M  AG  P++  F G+L AC            HC ++    E  
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 235 ----------YFDSMKND-----FGIIPK--IEHYGCMVDMLCRSGRVKEAHEFIQKMP- 276
                     Y     ND     FG +PK  +  +  M+    +SG+ ++A E   +M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 277 --IEANPIIWRTLISACCARGELKLAESI 303
             +  N   + +++ A      L L+++I
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTI 270


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 304/475 (64%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V PN FT+   LKACA +  L +G+ V    +K  F     V N+L+ MY    G
Sbjct: 367 MILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYAR-SG 425

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK FD + E++ +S++ +I  YA+   S +A++LF +++  G+     T  ++LS
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +G +  G+ + + + K  +  +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS 545

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG   +A+ LF +MLE GV P++V ++ +LSACSH GLV++G ++F SM 
Sbjct: 546 WTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMY 605

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G+IP++EHY C+VD+L RSG + EA +FI  MP +A+ ++WRT + AC   G L+L 
Sbjct: 606 TEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELG 665

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   K +I  EP   + Y+LLS++YA + +W++ + IR+ M ++ + K  G + +E++N+
Sbjct: 666 KHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENK 725

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD SH ++ EIY+ L  +  K+KK GYVP    VL D+ EE KE  L +HSEK+
Sbjct: 726 VHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKI 785

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIR+ KNLR+C DCHSA K+IS    REI+VRD +RFHH KD
Sbjct: 786 AVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKD 840



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 150/298 (50%), Gaps = 5/298 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G  P++FT   V+ ACA +  L LG+ +H   ++     D  V   L++MY  C  
Sbjct: 262 MIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVT 117
           +G +   RK+FD++ + +  SW+AMI GY + G    +A+DLFR M ++ V P+  T  +
Sbjct: 322 DGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSS 381

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            L AC +L AL +G+ V +   K   +    + N+LI M+A+ G +D A K F  +  + 
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           ++S+ +VI   A +    EA+ LF E+ + G+      F  LLS  +  G + KG +   
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +    G+         ++ M  R G ++ A +  + M  + N I W ++I+     G
Sbjct: 502 RVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHG 557



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 13/298 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           M+E G  PN++ +    +AC+    +++G S+ G V+K  +   D+ V   L+ M+    
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    KVF++M ER++V+W+ MI    + G + +AIDLF  M  SG  PD  T+  V+
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 120 SACTDLGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMN 174
           SAC ++  L +G+ + S   +    ++R VG C  LI+M+AKC   G +  A K+F  + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCC--LINMYAKCSVDGSMCAARKIFDQIL 336

Query: 175 GRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
              + SWT++I G     G   EA+ LF  M+   V P+   F   L AC++   +  G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 234 EYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           + F  ++K  F  +  + +   ++ M  RSGR+ +A +    +  E N I + T+I A
Sbjct: 397 QVFTHAVKLGFSSVNCVAN--SLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDA 451



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  P+  TY   LK C      ++G  VH  + +     D    N+L+ +Y  C G
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKC-G 115

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             E    +F  M S RD +SWSAM+  +A   +   A+  F  M  +G  P+E       
Sbjct: 116 QWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 120 SACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRT 177
            AC+    + VG  +  F+ K   +   V +   LIDMF K  GD+  A K+F  M  R 
Sbjct: 176 RACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            V+WT +I  L   G   EA+ LF +M+ +G  PD     G++SAC++  L+  G++
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQ 292



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 19/204 (9%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALI 154
           AI     M   G  PD  T    L  C    + ++G  V E   +  +   SV L N+LI
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL-NSLI 108

Query: 155 DMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
            +++KCG  +KA  +FR M + R ++SW+++++  A +  G  A+  F +M+E G  P++
Sbjct: 109 SLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY------GC-MVDMLCRS-GRV 265
             F     ACS    V  G    DS+   FG + K  +       GC ++DM  +  G +
Sbjct: 169 YCFAAATRACSTAEFVSVG----DSI---FGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 266 KEAHEFIQKMPIEANPIIWRTLIS 289
             A +  +KMP E N + W  +I+
Sbjct: 222 VSAFKVFEKMP-ERNAVTWTLMIT 244


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/475 (43%), Positives = 296/475 (62%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   G  P K T+  +LKAC     L+ GK V   +L   +  D  V N L+  Y S  G
Sbjct: 679  MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAY-SKSG 737

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   RKVFD+M  RD +SW+ MI GYA+ GL   A+    QMQ  GV  ++ + V++L+
Sbjct: 738  SMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN 797

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC+   ALE GK V + I K+ +   V +  ALI M+AKCG +++A ++F +   + +V+
Sbjct: 798  ACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVT 857

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I   A HG   +A+  F  M + G+ PD   F  +LSAC+H GLV +G   F S++
Sbjct: 858  WNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLE 917

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  G+ P IEHYGC+V +L R+GR +EA   I +MP   +  +W TL+ AC   G + LA
Sbjct: 918  SQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALA 977

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E      +     + + YVLLS++YA   RW+   KIR VM+ RG++K PG + IE+DN 
Sbjct: 978  EHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 1037

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+EF+  D+SH ++ EIYE L  +  +M++AGY P T  VL ++++E +E +L  HSE+L
Sbjct: 1038 IHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERL 1097

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIA+ LLKTPPGTPIRI KNLR+C DCH+A+KFISK+  REI+ RD +RFH FK+
Sbjct: 1098 AIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKN 1152



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 158/296 (53%), Gaps = 3/296 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+ TY  VL AC+    L  G+ +H  + +     D+ + N+L+ MY  C G +  
Sbjct: 380 GVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARC-GDLPR 438

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F+ M +RD +SW+A+I GYAR     +A+ L++QMQ  GV P  +T + +LSACT+
Sbjct: 439 ARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTN 498

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             A   GK +   I +  +  +  L NAL++M+ +CG + +A  +F     R I+SW S+
Sbjct: 499 SSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSM 558

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG A HG    A  LF EM + G+ PD + F  +L  C +   ++ GR+    +  + G
Sbjct: 559 IAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESG 617

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +   +     +++M  R G +++A+E    +    N + W  +I     +GE + A
Sbjct: 618 LQLDVNLGNALINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMIGGFADQGEDRKA 672



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 151/300 (50%), Gaps = 13/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P + T+  +L AC      + GK +H  +L+     + H+ N L++MY  C G
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRC-G 535

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   + VF+    RD +SW++MI G+A+ G    A  LF +M+  G+ PD+IT  +VL 
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +  ALE+G+ +   I +  +   V L NALI+M+ +CG +  A ++F S+  R ++S
Sbjct: 596 GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS 655

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A  G   +A  LF +M   G  P    F  +L AC     +D+G++    + 
Sbjct: 656 WTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHIL 715

Query: 241 N-----DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           N     D G+         ++    +SG + +A +   KMP   + + W  +I+     G
Sbjct: 716 NSGYELDTGV------GNALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAGYAQNG 768



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+K TY  +L AC    +L  GK +H  +++  +  D  VQN+L++MYG CE 
Sbjct: 174 MQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCED 233

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VF  +  RD VS++ M+G YA+     + I LF QM   G+ PD++T + +L 
Sbjct: 234 -LPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLD 292

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T    L+ GK +      + +N  + +  AL  MF +CGDV  A +   +   R +V 
Sbjct: 293 AFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVV 352

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++IA LA HG   EA   + +M   GV  +   ++ +L+ACS    +  G E   S  
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHI 411

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++ G    ++    ++ M  R G +  A E    MP + + I W  +I+    R +   A
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEA 470

Query: 301 ESITKRL 307
             + K++
Sbjct: 471 MKLYKQM 477



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 150/300 (50%), Gaps = 13/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+K T+  VL  C     L LG+ +H  +++     D+++ N L++MY  C G
Sbjct: 578 MKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRC-G 636

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF  +  R+ +SW+AMIGG+A  G    A +LF QMQ  G  P + T  ++L 
Sbjct: 637 SLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILK 696

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC     L+ GK V + I         G+ NALI  ++K G +  A K+F  M  R I+S
Sbjct: 697 ACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMS 756

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF---- 236
           W  +IAG A +G G  A+    +M E GV  +  +FV +L+ACS    +++G+       
Sbjct: 757 WNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIV 816

Query: 237 -DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              M+ D  +         ++ M  + G ++EA E       E N + W  +I+A    G
Sbjct: 817 KRKMQGDVRV------GAALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMINAYAQHG 869



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 148/292 (50%), Gaps = 3/292 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+  Y  +++ C     L   K +H  +++   G DI + N L++MY  C   +    +V
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRS-VSDAHQV 139

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F +M  RD +SW+++I  YA+ G    A  LF +MQ +G  P +IT +++L+AC     L
Sbjct: 140 FLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAEL 199

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E GK + S I +    R   + N+L++M+ KC D+  A ++F  +  R +VS+ +++   
Sbjct: 200 EYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLY 259

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A      E + LF +M   G+PPD V ++ LL A +   ++D+G+       N+ G+   
Sbjct: 260 AQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE-GLNSD 318

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           I     +  M  R G V  A + ++    + + +++  LI+A    G  + A
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFA-DRDVVVYNALIAALAQHGHYEEA 369



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 151/301 (50%), Gaps = 5/301 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+K TY  +L A      L+ GK +H   +      DI V   L  M+  C G
Sbjct: 275 MSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC-G 333

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   ++  +  ++RD V ++A+I   A+ G   +A + + QM+  GV  +  T ++VL+
Sbjct: 334 DVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLN 393

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   AL  G+ + S I +   +  V + N+LI M+A+CGD+ +A +LF +M  R ++S
Sbjct: 394 ACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLIS 453

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG A      EA+ L+++M   GV P  V F+ LLSAC++      G+   + + 
Sbjct: 454 WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKL 299
              GI         +++M  R G + EA    +     A  II W ++I+     G  + 
Sbjct: 514 RS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEG--TRARDIISWNSMIAGHAQHGSYEA 570

Query: 300 A 300
           A
Sbjct: 571 A 571


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 310/475 (65%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E+GV+ ++     V++AC   G+  +G SVHG  L+     D+ +  +LV MY    G
Sbjct: 203 MREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAK-NG 261

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             ++ R+VF  M  R++VSW+A+I G+A+ G + +A+DLFR+M  SG+ PD   +V+ L 
Sbjct: 262 HFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALL 321

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC D+G L++GK +  FI +++  + + L  A++DM++KCG ++ A KLF  ++ R +V 
Sbjct: 322 ACADVGFLKLGKSIHGFILRRLEFQCI-LGTAVLDMYSKCGSLESARKLFNKLSSRDLVL 380

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA    HG G +A+ALF+E+ E G+ PD   F  LLSA SH GLV++G+ +FD M 
Sbjct: 381 WNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMI 440

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +FGI P  +H  C+VD+L RSG V+EA+E +  M  E    IW  L+S C    +L+L 
Sbjct: 441 TEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELG 500

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E+I K+++ ++P       L+S++YA   +W+K  +IR++M   G KK+PG +LIE+   
Sbjct: 501 ETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGT 560

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + FV  D+SH Q +EI +M+ ++  +M+K GYVP T  V  D++E+ KE  L+ HSE+L
Sbjct: 561 RHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERL 620

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I+KNLRVC DCH A K+ISKI +REIVVRD  RFHHFKD
Sbjct: 621 AIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKD 675



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 166/332 (50%), Gaps = 20/332 (6%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     P+  T+   L ACA +GDL+  ++V        +G D+ V + L+H+Y  C G 
Sbjct: 103 LPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRC-GA 161

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    +VFD M  +D V+WS M+ G+   G   +A+ ++ +M+  GV  DE+ MV V+ A
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT  G   +G  V     +  +   V +  +L+DM+AK G  D A ++FR M  R  VSW
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSW 281

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I+G A +G   EA+ LF EM  +G+ PD  A V  L AC+  G +  G       K+
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLG-------KS 334

Query: 242 DFGIIPKIEHYGCM-----VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC----C 292
             G I +   + C+     +DM  + G ++ A +   K+    + ++W  +I+ C    C
Sbjct: 335 IHGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLS-SRDLVLWNAMIACCGTHGC 393

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
               L L + + +   G +P H +   LLS +
Sbjct: 394 GHDALALFQELNE--TGIKPDHATFASLLSAL 423



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 13/222 (5%)

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           +W+A++   +R G    A+ +FR +  S   PD  T    L+AC  LG L+  + V    
Sbjct: 79  AWNALLAARSRAGSPGAALRVFRALP-SSARPDSTTFTLALTACARLGDLDAAEAVRVRA 137

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
                 R V +C+AL+ ++++CG +  A+++F  M  +  V+W++++AG    GR +EA+
Sbjct: 138 FAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEAL 197

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSAC-----SHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
            ++  M E GV  D+V  VG++ AC     +  G    GR     M+ D  I        
Sbjct: 198 GMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATS----- 252

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +VDM  ++G    A +  + MP   N + W  LIS     G
Sbjct: 253 -LVDMYAKNGHFDVARQVFRMMPYR-NAVSWNALISGFAQNG 292


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 302/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V PN FT+   LKACA +  L +G+ V    +K  F     V N+L+ MY    G
Sbjct: 367 MILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYAR-SG 425

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK FD + E++ +S++ +I  YA+   S +A++LF +++  G+     T  ++LS
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS 485

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +G +  G+ + + + K  +  +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 486 GAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS 545

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG   +A+ LF +MLE GV P+ V ++ +LSACSH GLV++G ++F SM 
Sbjct: 546 WTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMY 605

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G+IP++EHY CMVD+L RSG + EA +FI  MP +A+ ++WRT + AC   G L+L 
Sbjct: 606 TEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELG 665

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   K +I  EP   + Y+LLS++YA   +W++ + IR+ M ++ + K  G + +E++N+
Sbjct: 666 KHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENK 725

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD SH ++ EIY+ L  +  K+KK GYVP    VL D+ EE KE  L +HSEK+
Sbjct: 726 VHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKI 785

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIR+ KNLR+C DCHSA K+IS    REI+VRD +RFHH KD
Sbjct: 786 AVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKD 840



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 150/298 (50%), Gaps = 5/298 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G  P++FT   V+ ACA +  L LG+ +H   ++     D  V   L++MY  C  
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVT 117
           +G +   RK+FD++ + +  SW+AMI GY + G    +A+DLFR M ++ V P+  T  +
Sbjct: 322 DGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSS 381

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            L AC +L AL +G+ V +   K   +    + N+LI M+A+ G +D A K F  +  + 
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           ++S+ +VI   A +    EA+ LF E+ + G+      F  LLS  +  G + KG +   
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +    G+         ++ M  R G ++ A +  + M  + N I W ++I+     G
Sbjct: 502 RVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHG 557



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 158/298 (53%), Gaps = 13/298 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           M+E G  PN++ +    +AC+    +++G S+ G V+K  +   D+ V   L+ M+    
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    KVF++M ER++V+W+ MI    + G + +AIDLF +M +SG  PD  T+  V+
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 120 SACTDLGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMN 174
           SAC ++  L +G+ + S   +    ++R VG C  LI+M+AKC   G +  A K+F  + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCC--LINMYAKCSVDGSMCAARKIFDQIL 336

Query: 175 GRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
              + SWT++I G     G   EA+ LF  M+   V P+   F   L AC++   +  G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 234 EYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           + F  ++K  F  +  + +   ++ M  RSGR+ +A +    +  E N I + T+I A
Sbjct: 397 QVFTHAVKLGFSSVNCVAN--SLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDA 451



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  P+  TY   LK C      ++G  VH  + +     D    N+L+ +Y  C G
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKC-G 115

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             E    +F  M S RD +SWSAM+  +A   +   A+  F  M  +G  P+E       
Sbjct: 116 QWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 120 SACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRT 177
            AC+    + VG  +  F+ K   +   V +   LIDMF K  GD+  A K+F  M  R 
Sbjct: 176 RACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            V+WT +I  L   G   EA+ LF EM+ +G  PD     G++SAC++  L+  G++
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQ 292



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 19/204 (9%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALI 154
           AI     M   G  PD  T    L  C    + ++G  V E   +  +   SV L N+LI
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL-NSLI 108

Query: 155 DMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
            +++KCG  +KA  +F+ M + R ++SW+++++  A +  G  A+  F +M+E G  P++
Sbjct: 109 SLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNE 168

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY------GC-MVDMLCRS-GRV 265
             F     ACS    V  G    DS+   FG + K  +       GC ++DM  +  G +
Sbjct: 169 YCFAAATRACSTAEFVSVG----DSI---FGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 266 KEAHEFIQKMPIEANPIIWRTLIS 289
             A +  +KMP E N + W  +I+
Sbjct: 222 VSAFKVFEKMP-ERNAVTWTLMIT 244


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/501 (41%), Positives = 311/501 (62%), Gaps = 32/501 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+      VL ACA  G+L+ GK++H  +    F    H+Q +LV+MY +C G + L
Sbjct: 212 GTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANC-GAMHL 270

Query: 65  GRKV-------------------------------FDEMSERDSVSWSAMIGGYARLGLS 93
            R+V                               FD M E+D V WSAMI GYA     
Sbjct: 271 AREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQP 330

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+ LF +MQ   + PD+ITM++V+SAC ++GAL   KW+ ++ +K    R++ + NAL
Sbjct: 331 LEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNAL 390

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM+AKCG++ KA ++F +M  + ++SW+S+I   AMHG    A+ALF  M E  + P+ 
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V F+G+L ACSH GLV++G+++F SM N+  I P+ EHYGCMVD+ CR+  +++A E I+
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE 510

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP   N IIW +L+SAC   GE++L E    RL+  EP H+   V+LS+IYAK  RW+ 
Sbjct: 511 TMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDD 570

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
              +R++M  +G+ K    + IE++NE++ F+  D+ H QS EIY+ LD +  ++K  GY
Sbjct: 571 VGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGY 630

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
            P+TS +L+D+ EE+K++ +  HSEKLA+ + L+     + IRIVKNLR+C DCHS  K 
Sbjct: 631 TPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKL 690

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
           +SK++  EIV+RDR RFHHF 
Sbjct: 691 VSKVHRIEIVMRDRTRFHHFN 711



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 166/338 (49%), Gaps = 41/338 (12%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIE 63
           G   ++F++P +LKA + +  LNLG  +HG   KF F   D  +Q+ L+ MY +C G I 
Sbjct: 110 GFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAAC-GRIM 168

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             R +FD+MS RD V+W+ MI GY++       + L+ +M+ SG  PD I + TVLSAC 
Sbjct: 169 DARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACA 228

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--------------------- 162
             G L  GK +  FI+         +  +L++M+A CG                      
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288

Query: 163 ----------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
                     V  A  +F  M  + +V W+++I+G A   + LEA+ LF EM    + PD
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPD 348

Query: 213 DVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            +  + ++SAC++ G + + +    Y D  KN FG    I     ++DM  + G + +A 
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYAD--KNGFGRTLPIN--NALIDMYAKCGNLVKAR 404

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           E  + MP   N I W ++I+A    G+   A ++  R+
Sbjct: 405 EVFENMP-RKNVISWSSMINAFAMHGDADSAIALFHRM 441



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 5/251 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++    +F  +    +   + ++  ++R     + + L+  ++ +G   D  +   +L
Sbjct: 63  SALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLL 122

Query: 120 SACTDLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            A + L AL +G  +     K    +    + +ALI M+A CG +  A  LF  M+ R +
Sbjct: 123 KAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDV 182

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W  +I G + +      + L+EEM  +G  PD +    +LSAC+H G +  G+     
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242

Query: 239 MK-NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +K N F +   I+    +V+M    G +  A E   ++P   + ++   ++S     G +
Sbjct: 243 IKDNGFRVGSHIQ--TSLVNMYANCGAMHLAREVYDQLP-SKHMVVSTAMLSGYAKLGMV 299

Query: 298 KLAESITKRLI 308
           + A  I  R++
Sbjct: 300 QDARFIFDRMV 310


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/428 (46%), Positives = 284/428 (66%), Gaps = 2/428 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N+++  +  C G +E    +F EM  RD VSW++M+  YA+ G   +A+ LF QM+  GV
Sbjct: 327 NSMLAGFVKC-GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 385

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P E T+V++LSAC  LGAL+ G  + ++I    +  +  +  AL+DM+AKCG +  A +
Sbjct: 386 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 445

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  + +++W ++IAG+A+HG   EA  LF+EM EAGV P+D+ FV +LSACSH G+
Sbjct: 446 VFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGM 505

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G++  D M + +GI PK+EHYGC++D+L R+G ++EA E I  MP+E NP     L+
Sbjct: 506 VDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALL 565

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
             C   G  +L E + KRLI  +P H   Y+LLS+IYA   +W+   K+R +M   G+ K
Sbjct: 566 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 625

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA-GYVPTTSEVLLDINEE 407
           +PG ++IEL   ++ FV GD SH +S +IYE L+E+  ++K A GY   T  VLLD+ EE
Sbjct: 626 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEE 685

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           DKE AL  HSEKLAIA+ LL       IRIVKNLRVC DCH   K ISK+Y REI+VRDR
Sbjct: 686 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDR 745

Query: 468 HRFHHFKD 475
           +RFHHF+D
Sbjct: 746 NRFHHFED 753



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 168/316 (53%), Gaps = 17/316 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G+ P+  TYPFV+KAC        G  VH  V+K  F  D ++ ++L+H+Y +   
Sbjct: 186 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYAN--- 242

Query: 61  GIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           G +LG  +++F+  S RD VSW+AMI GY +      A  +F +M    VC D I+  T+
Sbjct: 243 GKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTM 298

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           ++    +G ++  K     +  +M  R++   N+++  F KCG+V+ A  LF  M  R +
Sbjct: 299 INGYAIVGKIDEAK----RLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDV 354

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S++A  A  G+  EA+ALF++M   GV P +   V LLSAC+H G +DKG  +  +
Sbjct: 355 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHT 413

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             ND  I         +VDM  + G++  A +    M    + + W T+I+     G +K
Sbjct: 414 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGNVK 472

Query: 299 LAESITKRL--IGNEP 312
            A+ + K +   G EP
Sbjct: 473 EAQQLFKEMKEAGVEP 488



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 12/263 (4%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   + +F  +       ++++I   +      +A+ L+  M  SG+ PD +T   V+ A
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +      G  V + + K        + ++LI ++A   D+  A +LF   + R +VSW
Sbjct: 205 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 264

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I G   H     A  +F+ M    V  D +++  +++  +  G +D+ +  FD M  
Sbjct: 265 NAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE 320

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--ACCARGELKL 299
                  +  +  M+    + G V++A     +MP   + + W ++++  A C +    L
Sbjct: 321 R-----NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQCGKPNEAL 374

Query: 300 AESITKRLIGNEPMHESNYVLLS 322
           A     R +G +P   +   LLS
Sbjct: 375 ALFDQMRAVGVKPTEATVVSLLS 397


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 314/475 (66%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ P+ FTYP +LKAC  +  +  GK +HG V K     D+ VQN+L++MYG C G
Sbjct: 124 MMERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            +EL   VF+++  + + SWS+M      +G+ ++ + LFR+M + + +  +E  MV+ L
Sbjct: 183 EMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSAL 242

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC + GAL +G  +  F+ + +   ++ +  +L+DM+ KCG +D AL +F+ M  R  +
Sbjct: 243 SACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNL 302

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +++++I+G A+HG G  A+ +F EM++ G+ PD V +V LL+ACSH GLV +GR  F  M
Sbjct: 303 TYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEM 362

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             +  + P  EHYGC+VD+L R+G ++EA E IQ +PIE N ++WR+ +S C     ++L
Sbjct: 363 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIEL 422

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   + L+     +  +Y+L+S++Y++   W+   + R  +  +G+K+ PG + +++  
Sbjct: 423 GQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKG 482

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + + FV  D+SH Q KEIY+ML +M  ++K  GY P  +++LL+++EE+K++ L  HS+K
Sbjct: 483 KTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQK 542

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +AIAFALL TPPG+ I+I +NLR+C+DCH+ TK IS IY REIVVRDR+RFH FK
Sbjct: 543 VAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFK 597



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 17/309 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM---YGSCEGGIELGRKVFDE 71
           ++LK C  I +    K VH   +K           + V     +   E  +     +F  
Sbjct: 36  YLLKRCNNIDEF---KQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRG 92

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           + +  +  +  MI GY        A+  + +M   G+ PD  T   +L ACT L A+  G
Sbjct: 93  IDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREG 152

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K +   + K  +   V + N+LI+M+ +CG+++ +  +F  +  ++  SW+S+ +     
Sbjct: 153 KQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGM 212

Query: 192 GRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIP 247
           G   E + LF EM  E  +  ++   V  LSAC++ G ++ G     +     ++  II 
Sbjct: 213 GMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIV 272

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           K      +VDM  + G +  A    QKM  + N + +  +IS     GE + A  +   +
Sbjct: 273 KTS----LVDMYVKCGCIDNALHIFQKME-KRNNLTYSAMISGFALHGEGESALRMFSEM 327

Query: 308 I--GNEPMH 314
           I  G EP H
Sbjct: 328 IKEGLEPDH 336


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/508 (40%), Positives = 302/508 (59%), Gaps = 38/508 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  G+ P   T    L AC G   L LG+++H    K     D +V   L+ MY     
Sbjct: 124 MLGRGLIPTSHTLSSSLPACHG---LALGRALHAYAFKLALAGDSYVATALLGMYARGGD 180

Query: 57  -----------------------SCE---GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C    G ++  R++FD M  +D + W+AMI GY + 
Sbjct: 181 ADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQH 240

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ---MVNRSV 147
           G   +A+ LFR M  SGV PDE+ ++  LSA   LG  E G+W+ S+++      +N  V
Sbjct: 241 GRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARV 300

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           G   ALIDM+ KCG ++ A+ +F S+  + IV W ++I G AMHG   +A+ +F ++   
Sbjct: 301 G--TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 358

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P D+ F+GLL+ACSH GLVD+G ++F SM+ ++ I+PKIEHYGCMVD+L R+G ++E
Sbjct: 359 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 418

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A   +Q M I  + ++W +L++AC     + L + I   L+     +   Y+LLS+IYA 
Sbjct: 419 AFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAA 478

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
           +  WE+  ++R +M   G++K PG + IE+  ++YEFV GD SH ++ EIY ML++M   
Sbjct: 479 VGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGI 538

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           +K+ G+VP T  VL D++E  KE AL  HSEKLA+AF L+ T PG  I+IVKNLR C DC
Sbjct: 539 VKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADC 598

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           H+  K ISKI  R+IV RDR+RFHHF D
Sbjct: 599 HAVLKLISKITGRKIVFRDRNRFHHFVD 626



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 36/317 (11%)

Query: 22  GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS 81
           G   L     +H A ++     D  V   L   Y + +  ++L   +     +  +V ++
Sbjct: 44  GCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDR-LDLTVTLLRLTPDPTTVFYT 102

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
           + I  ++  GL   A+ L  +M   G+ P   T+ + L AC     L +G+ + ++  K 
Sbjct: 103 SAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALHAYAFKL 159

Query: 142 MVNRSVGLCNALIDMFAKCGD-------------------------------VDKALKLF 170
            +     +  AL+ M+A+ GD                               +D A +LF
Sbjct: 160 ALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELF 219

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  +  + W ++I G   HGR  EA+ LF  ML +GV PD+VA +  LSA +  G  +
Sbjct: 220 DGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAE 279

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            GR     +KN   +         ++DM C+ G +++A      +  + + ++W  +I+ 
Sbjct: 280 SGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVWNAMING 338

Query: 291 CCARGELKLAESITKRL 307
               G+ + A  +  +L
Sbjct: 339 YAMHGDSRKALEMFSQL 355


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/508 (40%), Positives = 302/508 (59%), Gaps = 38/508 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           ML  G+ P   T    L AC G   L LG+++H    K     D +V   L+ MY     
Sbjct: 123 MLGRGLIPTSHTLSSSLPACHG---LALGRALHAYAFKLALAGDSYVATALLGMYARGGD 179

Query: 57  -----------------------SCE---GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                  +C    G ++  R++FD M  +D + W+AMI GY + 
Sbjct: 180 ADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQH 239

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ---MVNRSV 147
           G   +A+ LFR M  SGV PDE+ ++  LSA   LG  E G+W+ S+++      +N  V
Sbjct: 240 GRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARV 299

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           G   ALIDM+ KCG ++ A+ +F S+  + IV W ++I G AMHG   +A+ +F ++   
Sbjct: 300 G--TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 357

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P D+ F+GLL+ACSH GLVD+G ++F SM+ ++ I+PKIEHYGCMVD+L R+G ++E
Sbjct: 358 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 417

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A   +Q M I  + ++W +L++AC     + L + I   L+     +   Y+LLS+IYA 
Sbjct: 418 AFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAA 477

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
           +  WE+  ++R +M   G++K PG + IE+  ++YEFV GD SH ++ EIY ML++M   
Sbjct: 478 VGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGI 537

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           +K+ G+VP T  VL D++E  KE AL  HSEKLA+AF L+ T PG  I+IVKNLR C DC
Sbjct: 538 VKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADC 597

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           H+  K ISKI  R+IV RDR+RFHHF D
Sbjct: 598 HAVLKLISKITGRKIVFRDRNRFHHFVD 625



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 36/317 (11%)

Query: 22  GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS 81
           G   L     +H A ++     D  V   L   Y + +  ++L   +     +  +V ++
Sbjct: 43  GCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDR-LDLTVTLLRLTPDPTTVFYT 101

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
           + I  ++  GL   A+ L  +M   G+ P   T+ + L AC     L +G+ + ++  K 
Sbjct: 102 SAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALHAYAFKL 158

Query: 142 MVNRSVGLCNALIDMFAKCGD-------------------------------VDKALKLF 170
            +     +  AL+ M+A+ GD                               +D A +LF
Sbjct: 159 ALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELF 218

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  +  + W ++I G   HGR  EA+ LF  ML +GV PD+VA +  LSA +  G  +
Sbjct: 219 DGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAE 278

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            GR     +KN   +         ++DM C+ G +++A      +  + + ++W  +I+ 
Sbjct: 279 SGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVWNAMING 337

Query: 291 CCARGELKLAESITKRL 307
               G+ + A  +  +L
Sbjct: 338 YAMHGDSRKALEMFSQL 354


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/453 (45%), Positives = 287/453 (63%), Gaps = 1/453 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
            G L+L + +HG   K     +  V   L  +Y      IE  R +FDE SE+   SW+A
Sbjct: 321 FGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNE-IESARLLFDESSEKSLASWNA 379

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GYA+ GL+  AI LF++MQ   V P+ +T+ ++LSAC  LGAL +GKWV   I ++ 
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
              ++ +  ALIDM+AKCG + +A +LF  M  +  V+W ++I+G  +HG G EA+ LF 
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           EML + V P  V F+ +L ACSH GLV +G E F SM +D G  P  EHY CMVD+L R+
Sbjct: 500 EMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           G + +A +FI+KMP+E  P +W  L+ AC    +  LA   + +L   +P +   YVLLS
Sbjct: 560 GNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLS 619

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           +IY+    + +   +R V+ +R + K PG TLIE+ N ++ F  GD+SH Q+  IY ML+
Sbjct: 620 NIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLE 679

Query: 383 EMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           ++  KM++AG+   T   L D+ EE+KE  +  HSEKLAIAF L+ + PGT IRI+KNLR
Sbjct: 680 KLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLR 739

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCH+ATKFISKI  R IVVRD +RFHHFKD
Sbjct: 740 VCLDCHNATKFISKITERVIVVRDANRFHHFKD 772



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 168/354 (47%), Gaps = 9/354 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G+  +  T   VL   A + DL LG  +    +K  F    +V   L  +Y  C G
Sbjct: 198 MVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKC-G 256

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +F ++ + D VS++AMI GY     +  ++ LF+++ +SG   +  ++V ++ 
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIP 316

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                G L + + +  F  K  V  +  +  AL  ++++  +++ A  LF   + +++ S
Sbjct: 317 VFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLAS 376

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G A +G   +A++LF+EM +  V P+ V    +LSAC+  G +  G+   D + 
Sbjct: 377 WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD-LI 435

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N       I     ++DM  + G + EA      MP E N + W  +IS     G    A
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHGYGHEA 494

Query: 301 ESITKRLIGNEPMHESNYVLLSHIY----AKLLRWEKKTKIREVMDKRGMKKIP 350
            ++   ++ +  +  +    LS +Y    A L+R E     R ++   G + +P
Sbjct: 495 LNLFNEMLHSR-VSPTGVTFLSVLYACSHAGLVR-EGDEIFRSMVHDHGFEPLP 546



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 159/379 (41%), Gaps = 50/379 (13%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FTY FV+   + +G   L  +     +   FG D+ V + +V  Y      +   
Sbjct: 105 LEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSR-VAAA 160

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVFD M ERD+V W+ M+ G  +     +AI +F  M   G+  D  T+  VL    +L
Sbjct: 161 RKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAEL 220

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G  ++    K   +    +   L  +++KCG+++ A  LF  +    +VS+ ++I
Sbjct: 221 QDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMI 280

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL-----------LSACSH--------- 225
           +G   +     +V LF+E+L +G   +  + VGL           L+ C H         
Sbjct: 281 SGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVV 340

Query: 226 ---------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
                             ++  R  FD           +  +  M+    ++G  ++A  
Sbjct: 341 SNSSVSTALTTVYSRLNEIESARLLFDESSEK-----SLASWNAMISGYAQNGLTEKAIS 395

Query: 271 FIQKMP---IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIY 325
             Q+M    +  NP+   +++SAC   G L L + +   LI  E    + +V   L  +Y
Sbjct: 396 LFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWV-HDLINRESFESNIFVSTALIDMY 454

Query: 326 AKLLRWEKKTKIREVMDKR 344
           AK     +  ++  +M ++
Sbjct: 455 AKCGSITEAQRLFSMMPEK 473


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 306/480 (63%), Gaps = 6/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVL-----KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY 55
           +L  G+ P+ FT   +      KAC  +  L+ GK +H   +K  F  D+HV + ++ MY
Sbjct: 378 LLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY 437

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
             C   +  G  VF+ +S  D V+W++MI G    G    A+ ++ +M+ S V PDE T 
Sbjct: 438 IKCGDMVNAG-IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 496

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            T++ A + + ALE G+ + + + K        +  +L+DM+AKCG+++ A +LF+ MN 
Sbjct: 497 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 556

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R I  W +++ GLA HG   EAV LF+ M   G+ PD V+F+G+LSACSH GL  +  EY
Sbjct: 557 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 616

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             SM ND+GI P+IEHY C+VD L R+G V+EA + I+ MP +A+  I R L+ AC  +G
Sbjct: 617 LHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQG 676

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
           +++  + +  RL   EP   + YVLLS+IYA   RW+  T  R++M ++ +KK PG + I
Sbjct: 677 DVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWI 736

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           ++ N ++ FV  D+SH Q+  IY+ ++EM + +++ GYVP T  VLLD+ +E+KE +L  
Sbjct: 737 DVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYY 796

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIA+ L+ TP  T IR++KNLRVC DCH+A K+ISK++ REIV+RD +RFHHF+D
Sbjct: 797 HSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRD 856



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 153/309 (49%), Gaps = 12/309 (3%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           S  + T   VLK C   G L   + VHG  +K     D+ V   LV++Y  C G +   R
Sbjct: 180 STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKC-GRMRDAR 238

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            +FD M ERD V W+ M+ GY +LGL  +A  LF +   SG+ PDE ++  +L+ C   G
Sbjct: 239 LLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAG 298

Query: 127 A--LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              LE+GK V     K  ++  V + N+L++M++K G    A ++F  M    ++SW S+
Sbjct: 299 TDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSM 358

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPD--DVAFVGLLSACSHCG---LVDKGRE-YFDS 238
           I+  A      E+V LF ++L  G+ PD   +A + L +A   CG   L+D+G++ +  +
Sbjct: 359 ISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHA 418

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K  F     +     ++DM  + G +  A      +    + + W ++IS C   G   
Sbjct: 419 IKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNED 475

Query: 299 LAESITKRL 307
            A  I  R+
Sbjct: 476 QALRIYHRM 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 10/283 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+      +L LGK  H  ++      D  + N L+ MY  C G +   R+VFD   ER
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKC-GSLSSARQVFDTTPER 141

Query: 76  DSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           D V+W+A++G YA       G + + + LFR ++ S      +T+  VL  C + G L  
Sbjct: 142 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            + V  +  K  +   V +  AL+++++KCG +  A  LF  M  R +V W  ++ G   
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--KGREYFDSMKNDFGIIPK 248
            G   EA  LF E   +G+ PD+ +   +L+ C   G  D   G++    +    G+   
Sbjct: 262 LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQ-VHGIAVKSGLDSD 320

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           +     +V+M  + G    A E    M    + I W ++IS+C
Sbjct: 321 VSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSC 362


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 303/476 (63%), Gaps = 9/476 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T+PFVLKACA +  L  GK  H  +LK  F  D+++ N+L+H Y SC G +E  + 
Sbjct: 124 PDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASC-GSLESAKN 182

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD+M +R  VSW+AMI  +   G    A+ LF Q Q     PD  T+ +V++AC  L A
Sbjct: 183 VFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCA 242

Query: 128 LEVGKWVESFIEKQ----MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           L +G W  +F+ +     +    V + N+L+DM+ KCG +D A ++F  M    + SW S
Sbjct: 243 LSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNS 302

Query: 184 VIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I G AMHG+G  A+  FE M+  +   P+ + FVG+LSAC+H  +V++GR+YFD M N+
Sbjct: 303 MILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNE 362

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR-GELKLAE 301
           + I P++EHYGC+VD+L R+G + EA E +  MP++ + +IWR+L+ +CC +   ++L+E
Sbjct: 363 YKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSE 422

Query: 302 SITKRLIGNEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +I ++++ +E    S  YVLLS +YA   RW     +R++M   G+ K PG +LIE+D  
Sbjct: 423 NIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGV 482

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDINEEDKEDALNKHSEK 419
            +EF  GD SH Q+KEIY++L+ +  ++   GY P  S+  ++D     K D+L  HSE+
Sbjct: 483 THEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSER 542

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA  LL   PG PIRI KNLRVC+DCH  T  IS+I+N EI+VRDR RFHHFKD
Sbjct: 543 LAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKD 598



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 17/308 (5%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-----SCEGGIELGRK 67
           Y  +L+      D++  K +H   L+    +     +T + +Y      S    +    +
Sbjct: 22  YNLLLQHLNECKDMSQLKQIHALSLRSTLPN----HSTTLFLYSRILHFSSLHDLNYAYR 77

Query: 68  VFDEMSERDSVSWSAMIGGYAR---LGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACT 123
           VFD++   +S  W+ +I   A+   + L  +AI L+  M Q S   PD  T   VL AC 
Sbjct: 78  VFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACA 137

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L AL  GK   + + K      V + N+LI  +A CG ++ A  +F  M  R++VSW +
Sbjct: 138 YLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNA 197

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I    + G    A+ LF +  +    PD      +++AC+    +  G      +  + 
Sbjct: 198 MIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNC 257

Query: 244 GIIPKIEHY---GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           G+    +H      ++DM C+ G +  A +  + M  + +   W ++I      G+ +LA
Sbjct: 258 GVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQ-KHDVTSWNSMILGFAMHGKGELA 316

Query: 301 ESITKRLI 308
               +R+I
Sbjct: 317 LECFERMI 324


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/409 (49%), Positives = 274/409 (66%), Gaps = 1/409 (0%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+F  +  ++ +SW+ MI  Y +  L T A+DL+ QM+   V PD IT  +VL AC DL 
Sbjct: 243 KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLS 302

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL +G+ +  ++EK+ +  ++ L N+LIDM+A+CG +D A ++F  M  R + SWTS+I+
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
              M G+G  AVALF EML +G  PD +AFV +LSACSH GL+D+GR YF  M +D+ I 
Sbjct: 363 AYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRIT 422

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P+IEHY C+VD+L R+GRV EA+  I++MPIE N  +W TL+S+C     + +       
Sbjct: 423 PRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADN 482

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+   P     YVLLS+IYAK  RW++ T+IR VM ++ ++K PG + +EL+N+++ F+ 
Sbjct: 483 LLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLA 542

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH QSKEIYE L  +  KMK+ GYVP T   L D+ EEDKE  L  HSEKLAI FAL
Sbjct: 543 GDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFAL 602

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L T     IRI KNLRVC DCH A K ISKI  REI+VRD +RFHHFKD
Sbjct: 603 LNTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKD 650



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 138/299 (46%), Gaps = 42/299 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  P+ +TYP VLKAC+   +L  G  +HG VLK     ++ V N L+ MYG C G
Sbjct: 110 MVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKC-G 168

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFDEM  +D VSW++M+ GYA      DA+++ R+M+  G  PD  TM +++ 
Sbjct: 169 CLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMP 228

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +  +  V      ++EK  VN                            +  + ++S
Sbjct: 229 AVANTSSENV-----LYVEKIFVN----------------------------LERKNLIS 255

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFD 237
           W  +I     +    +AV L+ +M +  V PD + F  +L AC     +  GR   EY +
Sbjct: 256 WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             K    + P +     ++DM  R G + +A     +M    +   W +LISA    G+
Sbjct: 316 KKK----LCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR-DVASWTSLISAYGMTGQ 369



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T+  VL AC  +  L LG+ +H  V K +   ++ ++N+L+ MY  C G ++  
Sbjct: 284 VEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARC-GCLDDA 342

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFD M  RD  SW+++I  Y   G   +A+ LF +M  SG  PD I  V +LSAC+  
Sbjct: 343 KRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHS 402

Query: 126 GALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           G L+ G+ + +   +   +   +     L+D+  + G VD+A  + + M
Sbjct: 403 GLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQM 451



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           ++  + KA     D+   K +H  +       +  +   L+  Y +C G   L RKVFDE
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAAC-GEPGLTRKVFDE 78

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           MS+R+ V ++ MI  Y       D + +FR+M   G  PD  T   VL AC+    L  G
Sbjct: 79  MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYG 138

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             +   + K  ++ ++ + N LI M+ KCG + +A ++F  M  + +VSW S++AG A +
Sbjct: 139 LLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHN 198

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
            R  +A+ +  EM + G  PD      L+ A ++
Sbjct: 199 MRFDDALEICREMEDYGQKPDGCTMASLMPAVAN 232


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/415 (45%), Positives = 280/415 (67%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  R +FD+M E+D V WSAMI GYA      +A++LF +MQ+ G+ PD++T+++V+
Sbjct: 28  GRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVI 87

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LG L+  KW+  +++K  +  ++ + NALIDM+AKCG++  A  +F  M  R ++
Sbjct: 88  SACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVI 147

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+I   A+HG    A+  F +M +  + P+ V FVG+L ACSH GLV++GR  F SM
Sbjct: 148 SWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASM 207

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            N+  I PK EHYGCMVD+  R+  +++A E ++ MP+  N +IW +L++AC   GE +L
Sbjct: 208 TNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENEL 267

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+++  EP H+   V LS+IYAK  RW+   ++R +M +RG+ K  G + IEL+N
Sbjct: 268 GEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNN 327

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++YEFV  DK H Q+ +IYE LDE+ +++K  GY P T  VL+D+ EE K++ +  HSEK
Sbjct: 328 QVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLWHSEK 387

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+ + L+    G+ IRIVKNLRVC DCH+  K +SK+Y  EI+VRDR RFHH+K
Sbjct: 388 LALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYK 442



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P++ T   V+ ACA +G L+  K +H  V K   G  + V N L+ MY  C G
Sbjct: 71  MQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKC-G 129

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VF++M  R+ +SW++MI  +A  G +++A+  F QM+   + P+ +T V VL 
Sbjct: 130 NLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLY 189

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC+  G +E G+    S   +  +         ++D+F +   +  AL+L  +M     +
Sbjct: 190 ACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNV 249

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           V W S++A   +HG         +++LE   P  D A V L
Sbjct: 250 VIWGSLMAACQIHGENELGEFAAKQVLELE-PDHDGALVQL 289



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           ++ +R++ +  A+I  +++ G V+ A  +F  M  + +V W+++I+G A   +  EA+ L
Sbjct: 8   KISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNL 67

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVD 257
           F EM   G+ PD V  + ++SAC+  G++D+ +    Y D  KN  G    + +   ++D
Sbjct: 68  FSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVD--KNGLGGALPVNN--ALID 123

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           M  + G +  A    +KM    N I W ++I+A    G+
Sbjct: 124 MYAKCGNLGAARGVFEKMQ-SRNVISWTSMINAFAIHGD 161


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/511 (41%), Positives = 307/511 (60%), Gaps = 41/511 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V PN FT+P +L AC  I     G  +H  + KF FG      N+L+HMY + + 
Sbjct: 116 MLQNSVLPNNFTFPSLLIACRKIQH---GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQA 172

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP---------- 110
            +E  R+VF  +   DSVSW+++I GY++ GL  +A  +F+ M                 
Sbjct: 173 -LEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQ 231

Query: 111 ----------------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
                                 D+    T+LSACT LGAL+ GKW+  +I++  +     
Sbjct: 232 TNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSK 291

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           L  A++DM+ KCG ++KAL++F S+    R I SW  +I GLAMHG G  A+ LF+EM  
Sbjct: 292 LTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMER 351

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             V PDD+ F+ LL+AC+H GLV++GR YF  M   +GI P++EH+GCMVD+L R+G V 
Sbjct: 352 QRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVP 411

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA + I +MP+  +  +  TL+ AC     ++L E I +R+I  EP +   YVLL+++YA
Sbjct: 412 EARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYA 471

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +WE   K+R++MD RG+KK PG ++IEL   ++EF+ G+++H Q+KE++  + EM  
Sbjct: 472 NAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLE 531

Query: 387 KMKKAGYVPTTSEVLLDIN---EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
            +K  GYV  T+ VL   +   EED E+ L  HSEKLAIAF L +T PG  +RI+KNLR+
Sbjct: 532 HLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRI 591

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           C DCH A K IS +++REI+VRDR RFH FK
Sbjct: 592 CEDCHHACKLISTVFDREIIVRDRTRFHRFK 622



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 137/331 (41%), Gaps = 44/331 (13%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--YGSCEGGIELGRKVFDE 71
           PF  + C  +  L   +  H  +++       H+   L++     S    +    K+FD 
Sbjct: 26  PFHFEKCQSMSQL---RQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDS 82

Query: 72  MSERDSVSWSAMIGGY--ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           + + D+  ++ +I G+  ++L  +   + L+  M  + V P+  T  ++L AC  +   +
Sbjct: 83  IPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---Q 139

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            G  + + + K          N+LI M+     +++A ++F ++     VSWTS+I+G +
Sbjct: 140 HGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYS 199

Query: 190 MHG-------------------------------RGLEAVALFEEM-LEAGVPPDDVAFV 217
             G                               R  EA ALF+ M  E     D     
Sbjct: 200 KWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVAT 259

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            +LSAC+  G +D+G+   + +K + GI    +    +VDM C+ G +++A +    +P+
Sbjct: 260 TMLSACTGLGALDQGKWIHEYIKRN-GIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL 318

Query: 278 EANPI-IWRTLISACCARGELKLAESITKRL 307
               I  W  +I      G  + A  + K +
Sbjct: 319 PCRWISSWNCMIGGLAMHGNGEAAIQLFKEM 349


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 306/476 (64%), Gaps = 10/476 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+K TYPFVLKACA +  L  GK VH  VLK  F  D ++ N+L+H Y SC G +E  RK
Sbjct: 83  PDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASC-GYLETARK 141

Query: 68  VFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VFD M E R+ VSW+ MI  YA++G     + +F +M +    PD  TM +V+ AC  LG
Sbjct: 142 VFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM-MKVYEPDCYTMQSVIRACGGLG 200

Query: 127 ALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L +G WV +F+ K+    V   V +   L+DM+ KCG ++ A ++F  M+ R + SW S
Sbjct: 201 SLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNS 260

Query: 184 VIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I G A+HG+   A+  F  M++   + P+ + FVG+LSAC+H G+VD+G  YF+ M  +
Sbjct: 261 IILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKE 320

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR-GELKLAE 301
           + + P + HYGC+VD+  R+G ++EA   + +MPI+ + +IWR+L+ AC  +   ++L+E
Sbjct: 321 YNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSE 380

Query: 302 SITKRLI-GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            + K++   N  +    YVLLS +YA   RW     +R++M+ +G+ K PG +LIE++  
Sbjct: 381 EMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGA 440

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDINEEDKEDALNKHSEK 419
            +EF  GD +H QSK+IY+ ++E+  K++  GY+P  S   L+D   E K++ +  HSE+
Sbjct: 441 AHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSER 500

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LL + P  PIR+ KNLRVCNDCH  TK IS+IYN EI+VRDR RFHHFKD
Sbjct: 501 LAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKD 556


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 299/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +YG+ P+ FT+PFVLKACA +  +  G+ +H  V++  +  D+ V   L+ MY  C G
Sbjct: 167 MFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC-G 225

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFD++  RD+V W++M+  Y++ G     + L  +M ++G+ P E T+VT +S
Sbjct: 226 CVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAIS 285

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D  AL  G+ +     +Q       +  AL+DM+AKCG V  A  LF  +  + +VS
Sbjct: 286 ASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVS 345

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G AMHG   EA+ LFEEM      PD + FVG+LSACSH GL+++G  +F++M 
Sbjct: 346 WNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMI 404

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P ++HY CMVD+L  SGR+ EA+  I +M +  +  +W  L+++C     ++L 
Sbjct: 405 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 464

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +RLI  EP    NYV+LS+IYA+  +WE   K+R++M  R +KK    + IE+ N+
Sbjct: 465 EIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNK 524

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GD SH  S EIY  L+ +G  MK+AGY P+T  V  D+ +++K + +  HSE+L
Sbjct: 525 VHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERL 584

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TPPGT + I KNLR+C DCH A KFISKI  REI VRD +R+HHFKD
Sbjct: 585 AIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKD 639



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 5/291 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y  +L++C     +  GK +H  V    FG D  +   LV++Y  C+  +   
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDS-LSSA 129

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD + + +   W+ +I GYA  G    A+ L+ QM   G+ PD  T   VL AC  L
Sbjct: 130 RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            A+E G+ +   + +    + V +  ALIDM+AKCG V  A ++F  +  R  V W S++
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSML 249

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFG 244
           A  + +G     ++L  EM+  G+ P +   V  +SA +    + +GRE    S + +F 
Sbjct: 250 AAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFE 309

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              K++    +VDM  + G V+ A    +++ ++   + W  +I+     G
Sbjct: 310 SHDKVK--TALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAMITGYAMHG 357


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G   + FT   VLK C  +  +N GK VH   +K  +  D+ V + ++ MY  C G
Sbjct: 515 MHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC-G 573

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +  FD +   D V+W+ +I G    G    A+ +F QM++ GV PDE T+ T+  
Sbjct: 574 DMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAK 633

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L ALE G+ + +   K        +  +L+DM+AKCG +D A  LF+ +    I +
Sbjct: 634 ASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA 693

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ GLA HG G EA+ LF++M   G+ PD V F+G+LSACSH GLV +  +Y  SM 
Sbjct: 694 WNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMH 753

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P+IEHY C+ D L R+G VKEA   I  M +EA+  ++RTL++AC  +G+ +  
Sbjct: 754 RDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETG 813

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + +  +L+  EP+  S YVLLS++YA   +W++    R +M    +KK PG + IE+ N+
Sbjct: 814 KRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNK 873

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV  D+S+ Q++ IY+ + +M R +K+ GYVP T   L+D+ EE+KE AL  HSEKL
Sbjct: 874 IHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKL 933

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF LL TPP TPIR++KNLRVC DCH+A K+ISK+Y+REIV+RD +RFH FKD
Sbjct: 934 AVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKD 988



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 9/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  +  ++ T+  VL     +  L LG+ VH   LK      + V N+L++MY     
Sbjct: 313 MVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 372

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L R VF+ MSERD +SW+++I G A+  L  +A+ LF Q+   G+ PD  TM +VL 
Sbjct: 373 -IGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLK 431

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           A + L   L + K +     K        +  ALID +++   + +A  LF   N   +V
Sbjct: 432 AASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLV 490

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +W ++++G      G + + LF  M + G   DD     +L  C     +++G++ +  +
Sbjct: 491 AWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYA 550

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K+ + +   +     ++DM  + G +  A      +P+  + + W TLIS C   GE +
Sbjct: 551 IKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEE 607

Query: 299 LAESI--TKRLIGNEP 312
            A  +    RL+G  P
Sbjct: 608 RALHVFSQMRLMGVLP 623



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 17/320 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-- 57
           +L  G+ P+ +T   VLKA + + + L+L K +H   +K     D  V   L+  Y    
Sbjct: 414 LLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNR 473

Query: 58  C--EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           C  E  +  GR  FD       V+W+AM+ GY +       ++LF  M   G   D+ T+
Sbjct: 474 CMKEAEVLFGRNNFD------LVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTL 527

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            TVL  C  L A+  GK V ++  K   +  + + + ++DM+ KCGD+  A   F S+  
Sbjct: 528 ATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 587

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
              V+WT++I+G   +G    A+ +F +M   GV PD+     L  A S    +++GR+ 
Sbjct: 588 PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 647

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           + +++K +    P +     +VDM  + G + +A+   +++ +  N   W  ++      
Sbjct: 648 HANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQH 704

Query: 295 GELKLAESITKRL--IGNEP 312
           GE K A  + K++  +G +P
Sbjct: 705 GEGKEALQLFKQMESLGIKP 724



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 6/205 (2%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+      DL LGK  H  +L  +   +  + N L+ MY  C G +   R+VFD+M ERD
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKC-GSLTYARRVFDKMPERD 111

Query: 77  SVSWSAMIGGYARLGLST-----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
            VSW++++  YA+          +A  LFR ++   V    +T+  +L  C   G +   
Sbjct: 112 LVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCAS 171

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           +    +  K  ++    +  AL++++ K G V +   LF  M  R +V W  ++      
Sbjct: 172 ESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEM 231

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAF 216
           G   EA+ L      +G+ P+++  
Sbjct: 232 GFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%)

Query: 78  VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137
           +S + ++ GY   G  +  +  F  M  S +  D++T + VL+    L +L +G+ V   
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 138 IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
             K  ++  + + N+LI+M+ K   +  A  +F +M+ R ++SW SVIAG+A     +EA
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 198 VALFEEMLEAGVPPDDVAFVGLLSACS 224
           V LF ++L  G+ PD      +L A S
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 35/284 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V  ++ T   +LK C   G +   +S HG   K     D  V   LV++Y    G ++ G
Sbjct: 148 VYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKF-GKVKEG 206

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +F+EM  RD V W+ M+  Y  +G   +AIDL      SG+ P+EIT+  +     D 
Sbjct: 207 RVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDD 266

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
              E G+ V+SF                     + G+   A+          I+S   ++
Sbjct: 267 S--EAGQ-VKSF---------------------ENGNDASAVS--------EIISRNKIL 294

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G    G+    +  F +M+E+ +  D V F+ +L+       +  G++    M    G+
Sbjct: 295 SGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQ-VHCMALKLGL 353

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
              +     +++M C+  ++  A      M  E + I W ++I+
Sbjct: 354 DLMLTVSNSLINMYCKLRKIGLARTVFNNMS-ERDLISWNSVIA 396



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +GK   + I     N    L N LI M++KCG +  A ++F  M  R +VSW S++A 
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 188 LAMHGRGL-----EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            A    G+     EA  LF  + +  V    +    +L  C H G V    E F      
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CASESFHGYACK 180

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G+       G +V++  + G+VKE     ++MP   + ++W  ++ A
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/542 (40%), Positives = 319/542 (58%), Gaps = 68/542 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--------------------- 39
           M   G  P+ +TYP VLKA +    L +G  +HGAVLK                      
Sbjct: 111 MYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKS 170

Query: 40  -----QFGDDIHVQ-----NTLVHMY---GSCEGGIELGRKV------------------ 68
                Q  D+I  +     N++V +Y   G     +EL R++                  
Sbjct: 171 LKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230

Query: 69  ---------------FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
                          F +++++  +SW+ MI  Y    +  +A+ L+ QM+ +GV PD +
Sbjct: 231 VTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVV 290

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           ++V+VL A  DL AL +G+ V  F E++ +  ++ L NALIDM+AKCG +  A  +F  M
Sbjct: 291 SIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM 350

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             R +VSWTS+I+     G+G +AVA+F EM  +G+ PD +AFV +L+ACSH GL+D GR
Sbjct: 351 QFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGR 410

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
            YF+ M  + GI PK+EH+ C+VD+L R+G++ EA+ FI++MP+E +  +W  L+SAC  
Sbjct: 411 YYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRV 469

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
              + +      +L+   P H   YVLLS+IYAK  RW     IR +M+++G+KK+PG +
Sbjct: 470 YSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGIS 529

Query: 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDAL 413
            +EL++ ++ F+ GD SH QSK+IYE LD +  KMK+ GY+P T   L D+ EEDKE  L
Sbjct: 530 NVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHL 589

Query: 414 NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
             HSEKLA+AFA++ T PGTPIR+ KNLRVC DCH A K ISKI  REI++RD HRFHHF
Sbjct: 590 AVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHF 649

Query: 474 KD 475
           ++
Sbjct: 650 QE 651



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 2/202 (0%)

Query: 25  DLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           D+N  K +HG VL  Q+   +  V   L+ +Y +C G   L R +FDE+++++ V ++ M
Sbjct: 33  DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAAC-GEPGLARHIFDEITDKNVVFFNVM 91

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           I  Y    L  DA+ +++ M   G  PD  T   VL A +   +L VG  +   + K  +
Sbjct: 92  IRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGL 151

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
           + ++ + N LI M+ KC  + +A ++   +  R +VSW S+++  A +GR  +A+ L  E
Sbjct: 152 DLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCRE 211

Query: 204 MLEAGVPPDDVAFVGLLSACSH 225
           M    + P+D     LL A ++
Sbjct: 212 MEALNLKPNDCTMASLLPAVTN 233


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/452 (44%), Positives = 286/452 (63%), Gaps = 1/452 (0%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           G L L  ++HG  LK  F     V   L  +Y      IE  RK+FDE  E+   SW+AM
Sbjct: 333 GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKL-NEIESARKLFDESPEKSLPSWNAM 391

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           I GY + GL+ DAI LFR+MQ S   P+ +T+  +LSAC  LGAL +GKWV   +     
Sbjct: 392 ISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             S+ +  ALI M+AKCG + +A +LF  M  +  V+W ++I+G  +HG G EA+ +F E
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSE 511

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           ML +G+ P  V F+ +L ACSH GLV +G E F+SM + +G  P ++HY C+VD+L R+G
Sbjct: 512 MLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAG 571

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            ++ A +FI+ MPI+  P +W TL+ AC    +  LA +++++L   +P +   +VLLS+
Sbjct: 572 HLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           I++    + +   +R+   KR + K PG TLIE+    + F  GD+SH Q K I+E L++
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEK 691

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           +  KM++AGY P T   L D+ EE++E  +  HSE+LAIAF L+ T PGT IRI+KNLRV
Sbjct: 692 LEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRV 751

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH+ATK ISKI  R IVVRD +RFHHFKD
Sbjct: 752 CLDCHTATKLISKITERVIVVRDANRFHHFKD 783



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 5/217 (2%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           SPN  T   +L ACA +G L+LGK VH  V    F   I+V   L+ MY  C G I   R
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC-GSIAEAR 475

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FD M +++ V+W+ MI GY   G   +A+ +F +M  SG+ P  +T + VL AC+  G
Sbjct: 476 RLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAG 535

Query: 127 ALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSV 184
            ++ G  +  S I +     SV     ++D+  + G + +AL+   +M  +   S W ++
Sbjct: 536 LVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETL 595

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           +    +H     A  + E++ E  + PD+V +  LLS
Sbjct: 596 LGACRIHKDTNLARTVSEKLFE--LDPDNVGYHVLLS 630



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 9/308 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN  TY F + A +G  D   G  +HG  +      ++ + + +V MY      +E  
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKF-WRVEDA 173

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACT 123
           RKVFD M E+D++ W+ MI GY +  +  ++I +FR + I+  C   D  T++ +L A  
Sbjct: 174 RKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVA 232

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L  L +G  + S   K        +    I +++KCG +  A  LFR      IV++ +
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNA 292

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I G   +G    +++LF+E++ +G        V L+    H  L+     Y  S+K++F
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGY--SLKSNF 350

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
             +        +  +  +   ++ A +   + P ++ P  W  +IS     G  + A S+
Sbjct: 351 --LSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLP-SWNAMISGYTQNGLTEDAISL 407

Query: 304 TKRLIGNE 311
            + +  +E
Sbjct: 408 FREMQNSE 415


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 302/471 (64%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G++ +++T+  +L AC  +  L  GK +H  +++ ++ D++ V + LV MY  C   I+L
Sbjct: 267 GIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRS-IKL 325

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF  M+ ++ +SW+A+I GY + G S +A+ +F +MQ  G+ PD+ T+ +V+S+C +
Sbjct: 326 AETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCAN 385

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G           +   + + NAL+ ++ KCG ++ A +LF  M+    VSWT++
Sbjct: 386 LASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 445

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           ++G A  GR  E + LFE+ML  GV PD V F+G+LSACS  G V+KGR YF SM+ D G
Sbjct: 446 VSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHG 505

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P  +HY CM+D+  RSG++KEA EFI++MP+  + I W TL+SAC  RG++++ +   
Sbjct: 506 IVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAA 565

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L+  +P + ++YVLL  ++A   +W +  ++R  M  R +KK PG + I+  N+++ F
Sbjct: 566 ENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIF 625

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D+SH  SK IYE L+ +  KM + GY P  S VL D+ + DK   ++ HSEKLAIAF
Sbjct: 626 SADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAF 685

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+  P   PIRIVKNLRVC DCH+ATKFISKI  R+I+VRD  RFH F D
Sbjct: 686 GLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSD 736



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 169/323 (52%), Gaps = 32/323 (9%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG--SCEGG-- 61
           V P++ T   ++ A + +GD  LGK  H  +L+  FG +  V + LV MY   S  G   
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 62  --------------------------IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                                     +E  R++F+ M++RDS++W+ M+ G+ + GL ++
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+++FR+M+  G+  D+ T  ++L+AC  L ALE GK + ++I +   + +V + +AL+D
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M++KC  +  A  +FR M  + I+SWT++I G   +G   EAV +F EM   G+ PDD  
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
              ++S+C++   +++G + F  +    G++  I     +V +  + G +++AH    +M
Sbjct: 376 LGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434

Query: 276 PIEANPIIWRTLISACCARGELK 298
               + + W  L+S     G  K
Sbjct: 435 SFH-DQVSWTALVSGYAQFGRAK 456



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 41/257 (15%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTVLSACTDL 125
           +F  M++RD VS++A+I G++  G    A+ ++  +    S V P  ITM T++ A + L
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-------------------------- 159
           G   +GK     I +     +  + + L+DM+AK                          
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 160 -----CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
                C  V++A +LF  M  R  ++WT+++ G   +G   EA+ +F  M   G+  D  
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 215 AFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
            F  +L+AC     +++G++   Y    + D  +         +VDM  +   +K A   
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVG----SALVDMYSKCRSIKLAETV 329

Query: 272 IQKMPIEANPIIWRTLI 288
            ++M  + N I W  LI
Sbjct: 330 FRRMTCK-NIISWTALI 345



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 43/194 (22%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--G 208
           NAL+   A    +     LF SM  R IVS+ +VIAG +  G   +AV ++  +L+A   
Sbjct: 76  NALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSS 135

Query: 209 VPPDDVAFVGLLSACS-----------HC------------------------GLVDKGR 233
           V P  +    ++ A S           HC                         LV   +
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
             FD + +       +  Y  M+  L R   V+EA    + M  + + I W T+++    
Sbjct: 196 RAFDEVDSK-----NVVMYNTMITGLLRCKMVEEARRLFEVM-TDRDSITWTTMVTGFTQ 249

Query: 294 RGELKLAESITKRL 307
            G    A  I +R+
Sbjct: 250 NGLESEALEIFRRM 263


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/474 (43%), Positives = 304/474 (64%), Gaps = 3/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN+FT+  VL +C G     LG+ +H  + K  + + I V ++L+ MY    G
Sbjct: 102 MLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKA-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R VF+ + ERD VS +A+I GYA+LGL  +A++LF ++Q  G+  + +T  ++L+
Sbjct: 161 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLT 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L AL+ GK V S + +  +   V L N+LIDM++KCG+++ A K+F +M  RT++S
Sbjct: 221 ALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVIS 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W +++ G + HG+G+E V LF+ M E   V PD V F+ +LS CSH GL DKG E FD M
Sbjct: 281 WNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEM 340

Query: 240 KNDFGIIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            N    I   IEHYGC++D+L R+GRV+EA E I+KMP E    IW +L+ AC       
Sbjct: 341 MNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTN 400

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + E +  RL+  EP +  NYV+LS++YA   RWE    +RE+M ++ + K PG + IELD
Sbjct: 401 IGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELD 460

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             I+ F   D+SH + +E++  + E+  K K++GYVP  S VL D++EE KE  L  HSE
Sbjct: 461 QTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSE 520

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           KLA+AF L+ T  G P+R++KNLR+C DCH+  KF+SK+Y R++ +RD++RFHH
Sbjct: 521 KLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHH 574



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 147/279 (52%), Gaps = 9/279 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L  C     +  G+ VH  ++K  +   +++   L+ +Y  CE  +   R VFDEM
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC-LGCARHVFDEM 71

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ER+ VSW+AMI GY++ G +++A+ LF QM  S   P+E T  TVLS+CT     E+G+
Sbjct: 72  RERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGR 131

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S I K+     + + ++L+DM+AK G + +A  +F  +  R +VS T++I+G A  G
Sbjct: 132 QIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 191

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM---KNDFGIIPKI 249
              EA+ LF  +   G+  + V +  LL+A S    +D G++    +   +  F ++ + 
Sbjct: 192 LDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQ- 250

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                ++DM  + G +  A +    MP+    I W  ++
Sbjct: 251 ---NSLIDMYSKCGNLNYARKIFNNMPVRT-VISWNAML 285


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 313/469 (66%), Gaps = 5/469 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  T  F LKACA     +    +H  +L+F F  D+ +Q TL+  Y    G ++L +K+
Sbjct: 102 DALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKI-GDLDLAQKL 160

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGA 127
           FDEM + D  SW+A+I G+A+     DAI  F++M++ G + P+ +T+   L AC+ LGA
Sbjct: 161 FDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGA 220

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIA 186
           L+ G+ V  +I ++ +N +V +CN +IDM+AKCG +DKA  +F +M   +++++W ++I 
Sbjct: 221 LKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIM 280

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
             AMHG G +A+ LFE++  +G+ PD V+++ +L AC+H GLV+ G + F+SM    G+ 
Sbjct: 281 AFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLE 339

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P I+HYG MVD+L R+GR+KEA++ +  +P   N ++W+TL+ AC   G++++AE  +++
Sbjct: 340 PNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRK 398

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+    +   ++VLLS++YA   RW+   ++R+ M +R +KK PG + IE+  ++Y+FV 
Sbjct: 399 LVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVN 458

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD+SH   +EIY  LDE+  ++K  GY   TS VL DI +EDKE+AL  HSEKLA+AF L
Sbjct: 459 GDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGL 518

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             T  GTPI+++KNLR+C DCH   K ISKIY REI+VRDR RFH FK+
Sbjct: 519 TCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKE 567



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN  T    L AC+ +G L  G+SVH  +++ +   ++ V N ++ MY  C G ++  
Sbjct: 201 LRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKC-GSMDKA 259

Query: 66  RKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             VF+ M  ++  ++W+ MI  +A  G    A+DLF ++  SG+ PD ++ + VL AC  
Sbjct: 260 YWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNH 319

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G +E G  + + + ++ +  ++    +++D+  + G + +A  +  S+    +V W ++
Sbjct: 320 AGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTL 379

Query: 185 IAGLAMHG 192
           +     +G
Sbjct: 380 LGACRTYG 387


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/409 (48%), Positives = 277/409 (67%), Gaps = 1/409 (0%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F EM  RD VSW++M+  YA+ G   +A+ LF QM+  GV P E T+V++LSAC  LGA
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 229

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ G  + ++I    +  +  +  AL+DM+AKCG +  A ++F +M  + +++W ++IAG
Sbjct: 230 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 289

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           +A+HG   EA  LF+EM EAGV P+D+ FV +LSACSH G+VD+G++  D M + +GI P
Sbjct: 290 MAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 349

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           K+EHYGC++D+L R+G ++EA E I  MP+E NP     L+  C   G  +L E + KRL
Sbjct: 350 KVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRL 409

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           I  +P H   Y+LLS+IYA   +W+   K+R +M   G+ K+PG ++IEL   ++ FV G
Sbjct: 410 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 469

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKA-GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           D SH +S +IYE L+E+  ++K A G+   T +VLLD+ EEDKE AL  HSEKLAIA+ L
Sbjct: 470 DWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGL 529

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L       IRIVKNLRVC DCH  TK ISK+Y REI+VRDR+RFHHF+D
Sbjct: 530 LHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFED 578



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P + T   +L ACA +G L+ G  +H  +   +   +  V   LV MY  C G
Sbjct: 205 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC-G 263

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L  +VF+ M  +D ++W+ +I G A  G   +A  LF++M+ +GV P++IT V +LS
Sbjct: 264 KISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLS 323

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC+  G ++ G K ++       +   V     +ID+ A+ G +++A++L  +M
Sbjct: 324 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM 377



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G  D A  LF  M  R +VSW S++A  A  G+  EA+ALF++M   GV P +   V LL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           SAC+H G +DKG  +  +  ND  I         +VDM  + G++  A +    M    +
Sbjct: 222 SACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKD 279

Query: 281 PIIWRTLISACCARGELKLAESITKRL--IGNEPMHESNYVLLS 322
            + W T+I+     G +K A+ + K +   G EP   +   +LS
Sbjct: 280 VLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLS 323


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 285/452 (63%), Gaps = 1/452 (0%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           G L L  ++HG  LK  F     V   L  +Y      IE  RK+FDE  E+   SW+AM
Sbjct: 333 GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKL-NEIESARKLFDESPEKSLPSWNAM 391

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           I GY + GL+ DAI LFR+MQ S   P+ +T+  +LSAC  LGAL +GKWV   +     
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             S+ +  ALI M+AKCG + +A +LF  M  +  V+W ++I+G  +HG+G EA+ +F E
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYE 511

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           ML +G+ P  V F+ +L ACSH GLV +G E F+SM + +G  P ++HY CMVD+L R+G
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAG 571

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            ++ A +FI+ M IE    +W TL+ AC    +  LA +++++L   +P +   +VLLS+
Sbjct: 572 HLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           I++    + +   +R+   KR + K PG TLIE+    + F  GD+SH Q KEIYE L++
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           +  KM++AGY P T   L D+ EE++E  +  HSE+LAIAF L+ T PGT IRI+KNLRV
Sbjct: 692 LEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRV 751

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH+ TK ISKI  R IVVRD +RFHHFKD
Sbjct: 752 CLDCHTVTKLISKITERVIVVRDANRFHHFKD 783



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           SPN  T   +L ACA +G L+LGK VH  V    F   I+V   L+ MY  C G I   R
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC-GSIAEAR 475

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FD M++++ V+W+ MI GY   G   +A+++F +M  SG+ P  +T + VL AC+  G
Sbjct: 476 RLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAG 535

Query: 127 ALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWT 182
            ++ G  +  S I +     SV     ++D+  + G + +AL+   +M+   G ++  W 
Sbjct: 536 LVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV--WE 593

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           +++    +H     A  + E++ E  + PD+V +  LLS
Sbjct: 594 TLLGACRIHKDTNLARTVSEKLFE--LDPDNVGYHVLLS 630



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 182/429 (42%), Gaps = 61/429 (14%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN  TY F + A +G  D   G+ +HG  +      ++ + + +V MY      +E  
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF-WRVEDA 173

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACT 123
           RKVFD M E+D++ W+ MI GY +  +  ++I +FR + I+  C   D  T++ +L A  
Sbjct: 174 RKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVA 232

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L  L +G  + S   K        +    I +++KCG +     LFR      IV++ +
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-------- 235
           +I G   +G    +++LF+E++ +G        V L+    H  L+     Y        
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLS 352

Query: 236 -----------------FDSMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEF---IQ 273
                             +S +  F   P+  +  +  M+    ++G  ++A      +Q
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI--YAKLLRW 331
           K     NP+    ++SAC   G L L + +   L+ +     S YV  + I  YAK    
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWV-HDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE----IYEMLDEMGRK 387
            +  ++ ++M K+   ++  +T+I           G   H Q +E     YEML+     
Sbjct: 472 AEARRLFDLMTKKN--EVTWNTMIS----------GYGLHGQGQEALNIFYEMLN----- 514

Query: 388 MKKAGYVPT 396
              +G  PT
Sbjct: 515 ---SGITPT 520


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/471 (42%), Positives = 301/471 (63%), Gaps = 1/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G   ++ T     KAC  +  L+ GK +H   +K  F  D+HV + ++ MY  C   +  
Sbjct: 1102 GEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA 1161

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            G  VF+ +S  D V+W++MI G    G    A+ ++ +M+ S V PDE T  T++ A + 
Sbjct: 1162 G-IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSC 1220

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            + ALE G+ + + + K        +  +L+DM+AKCG+++ A +LF+ MN R I  W ++
Sbjct: 1221 VTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAM 1280

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            + GLA HG   EAV LF+ M   G+ PD V+F+G+LSACSH GL  +  EY  SM ND+G
Sbjct: 1281 LVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYG 1340

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P+IEHY C+VD L R+G V+EA + I+ MP +A+  I R L+ AC  +G+++  + + 
Sbjct: 1341 IEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVA 1400

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             RL   EP   + YVLLS+IYA   RW+  T  R++M ++ +KK PG + I++ N ++ F
Sbjct: 1401 ARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLF 1460

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
            V  D+SH Q+  IY+ ++EM + +++ GYVP T  VLLD+ +E+KE +L  HSEKLAIA+
Sbjct: 1461 VVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAY 1520

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             L+ TP  T IR++KNLRVC DCH+A K+ISK++ REIV+RD +RFHHF+D
Sbjct: 1521 GLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRD 1571



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 157/309 (50%), Gaps = 6/309 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
            +L  G+ P+ FT   VL+AC+ + D LN+ + +H   LK     D  V  TL+ +Y S  
Sbjct: 996  LLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVY-SKS 1054

Query: 60   GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            G +E    +F    + D   W+AM+ GY        A++LF  +  SG   D+IT+ T  
Sbjct: 1055 GKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAA 1114

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             AC  L  L+ GK + +   K   +  + + + ++DM+ KCGD+  A  +F  ++    V
Sbjct: 1115 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 1174

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
            +WTS+I+G   +G   +A+ ++  M ++ V PD+  F  L+ A S    +++GR+ + + 
Sbjct: 1175 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 1234

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            +K D    P +     +VDM  + G +++A+   +KM +  N  +W  ++      G  +
Sbjct: 1235 IKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 1291

Query: 299  LAESITKRL 307
             A ++ K +
Sbjct: 1292 EAVNLFKSM 1300



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 28/309 (9%)

Query: 12   TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
            T   VL A AG  DL LGK VHG  +K     D+ V N+LV+MY S  G     R+VF++
Sbjct: 906  TLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY-SKMGCAYFAREVFND 964

Query: 72   MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL------ 125
            M   D +SW++MI   A+  L  ++++LF  +   G+ PD  T+ +VL AC+ L      
Sbjct: 965  MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNI 1024

Query: 126  ------GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                   AL+ G   +SF+              LID+++K G +++A  LF++ +   + 
Sbjct: 1025 SRQIHVHALKTGNIADSFV-----------ATTLIDVYSKSGKMEEAEFLFQNKDDLDLA 1073

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
             W +++ G  +   G +A+ LF  + ++G   D +       AC    L+D+G++ +  +
Sbjct: 1074 CWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHA 1133

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            +K  F     +     ++DM  + G +  A      +    + + W ++IS C   G   
Sbjct: 1134 IKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNED 1190

Query: 299  LAESITKRL 307
             A  I  R+
Sbjct: 1191 QALRIYHRM 1199



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+      +L LGK  H  ++      D  + N L+ MY  C G +   R+VFD   ER
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKC-GSLSSARQVFDTTPER 685

Query: 76  DSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           D V+W+A++G YA       G + + + LFR ++ S      +T+  VL  C + G L  
Sbjct: 686 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            + V  +  K  +   V +  AL+++++KCG +  A  LF  M  R +V W  ++ G   
Sbjct: 746 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            G   EA  LF E   +G+ PD+ +   +L+  S     D+G+   D ++
Sbjct: 806 LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEGKWLADQVQ 854



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 21/250 (8%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           S  + T   VLK C   G L   + VHG  +K     D+ V   LV++Y  C G +   R
Sbjct: 724 STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKC-GRMRDAR 782

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            +FD M ERD V W+ M+ GY +LGL  +A  LF +   SG+ PDE ++  +L+  +++ 
Sbjct: 783 LLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN 842

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-------CGDVDKALKLFRSMNGRTI- 178
             E GKW+   ++      S+   N  +  + K        GD   A++ F +MNG  I 
Sbjct: 843 WDE-GKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNID 901

Query: 179 ---VSWTSVIAGLAMHGRGLEAVALFEEM----LEAGVPPDDVAFVGLLSACSHCGLVDK 231
              V+   V+A +A    G + + L +++    +++G+  D      L++  S  G    
Sbjct: 902 YDAVTLLVVLAAVA----GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 957

Query: 232 GREYFDSMKN 241
            RE F+ MK+
Sbjct: 958 AREVFNDMKH 967


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/419 (46%), Positives = 285/419 (68%), Gaps = 2/419 (0%)

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           SC+  + + + +F ++ E+  +SW+ MI  Y    +  +A+DL+ QMQ+ GV PD +++ 
Sbjct: 252 SCDNVLYV-KDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSIS 310

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +VL AC DL A  +G+ +  ++E++ +  ++ L NALIDM+AKCG + +A  +F  M  R
Sbjct: 311 SVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFR 370

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSWTS+I+   M G+G +AVALF++M ++G  PD +AFV +L+ACSH GLVD+GR  F
Sbjct: 371 DVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCF 430

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           + M  ++GI P IEHY CMVD+L R+G++ EA+   ++MP+E N  +W +L+SAC     
Sbjct: 431 NLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSS 489

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + +A      L    P     YVLLS+IYAK  RW+    +R +M+ +G+KKIPG++ +E
Sbjct: 490 MNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVE 549

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           +++ +Y F+ GD+SH QSKEIY+ L  +  +MK+ GY+P T   L D+ EEDKE  L  H
Sbjct: 550 INDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVH 609

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLAI FA+L T PG+ IRI KN+RVC DCH ATK ISKI  REI++RD HRFHHF+D
Sbjct: 610 SEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRD 668



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           L+  Y +C G     R +FDE+++++ V ++ MI  Y   GL  DA+ +F+ M   G  P
Sbjct: 77  LMRAYAAC-GEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYP 135

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T   VL AC+  G L VG  +   + K  ++ ++ + N L+ M+ KC  +D A ++ 
Sbjct: 136 DNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVL 195

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--CGL 228
             M GR +VSW S++AG A +GR  +A+ L  EM +  + PD      LL A ++  C  
Sbjct: 196 DEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDN 255

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWR 285
           V   ++ F  +K    I      +  M+ +   +    EA +   +M    +E + +   
Sbjct: 256 VLYVKDMFVKLKEKSLI-----SWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSIS 310

Query: 286 TLISACCARGELKLA 300
           +++ AC   G+L  A
Sbjct: 311 SVLPAC---GDLSAA 322


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   G  P K T+  +LK C     L+ GK V   +L   +  D  V N L+  Y S  G
Sbjct: 624  MQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAY-SKSG 682

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   R+VFD+M  RD VSW+ +I GYA+ GL   A++   QMQ   V P++ + V++L+
Sbjct: 683  SMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLN 742

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC+   ALE GK V + I K+ +   V +  ALI M+AKCG   +A ++F ++  + +V+
Sbjct: 743  ACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVT 802

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I   A HG   +A+  F  M + G+ PD   F  +LSAC+H GLV +G + F SM+
Sbjct: 803  WNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSME 862

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +++G++P IEHYGC+V +L R+ R +EA   I +MP   +  +W TL+ AC   G + LA
Sbjct: 863  SEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALA 922

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E      +     + + Y+LLS++YA   RW+   KIR VM+ RG++K PG + IE+DN 
Sbjct: 923  EHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 982

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+EF+  D+SH ++ EIY  L  +  +M++AGY P T  VL D+ +  +E +L  HSE+L
Sbjct: 983  IHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERL 1042

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIA+ L+KTPPGTPIRI KNLR+C DCH+A+KFISK+  REI+ RD +RFH FK+
Sbjct: 1043 AIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKN 1097



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 154/292 (52%), Gaps = 3/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+ N+ TY  +L AC+    L  GK +H  + +     D+ + N L+ MY  C G +  
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC-GDLPK 383

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F  M +RD +SW+A+I GYAR     +A+ L++QMQ  GV P  +T + +LSAC +
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             A   GK +   I +  +  +  L NAL++M+ +CG + +A  +F     R ++SW S+
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG A HG    A  LF+EM    + PD++ F  +LS C +   ++ G++    +  + G
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI-TESG 562

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   +     +++M  R G +++A      +    + + W  +I  C  +GE
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIGGCADQGE 613



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 3/307 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PNK TY  +L AC    +L  GK +H  ++K  +  D  VQN+L+ MYG C G
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKC-G 177

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VF  +S RD VS++ M+G YA+     + + LF QM   G+ PD++T + +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T    L+ GK +     ++ +N  + +  AL+ M  +CGDVD A + F+    R +V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++IA LA HG  +EA   +  M   GV  +   ++ +L+ACS    ++ G+     + 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D G    ++    ++ M  R G + +A E    MP + + I W  +I+    R +   A
Sbjct: 358 ED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEA 415

Query: 301 ESITKRL 307
             + K++
Sbjct: 416 MRLYKQM 422



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 5/291 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  T+  VL  C     L LGK +HG + +     D+++ N L++MY  C G ++  
Sbjct: 528 LEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRC-GSLQDA 586

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VF  +  RD +SW+AMIGG A  G    AI+LF QMQ  G  P + T  ++L  CT  
Sbjct: 587 RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSS 646

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L+ GK V ++I         G+ NALI  ++K G +  A ++F  M  R IVSW  +I
Sbjct: 647 ACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKII 706

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFG 244
           AG A +G G  AV    +M E  V P+  +FV LL+ACS    +++G R + + +K    
Sbjct: 707 AGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ 766

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              ++     ++ M  + G   EA E    + IE N + W  +I+A    G
Sbjct: 767 GDVRVG--AALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 13/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P + T+  +L ACA       GK +H  +L+     + H+ N L++MY  C G
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC-G 480

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + VF+    RD +SW++MI G+A+ G    A  LF++MQ   + PD IT  +VLS
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +  ALE+GK +   I +  +   V L NALI+M+ +CG +  A  +F S+  R ++S
Sbjct: 541 GCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A  G  ++A+ LF +M   G  P    F  +L  C+    +D+G++    + 
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL 660

Query: 241 N-----DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           N     D G+         ++    +SG + +A E   KMP   + + W  +I+     G
Sbjct: 661 NSGYELDTGV------GNALISAYSKSGSMTDAREVFDKMP-SRDIVSWNKIIAGYAQNG 713



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 163/322 (50%), Gaps = 4/322 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+SP+K TY  +L A      L+ GK +H   ++     DI V   LV M   C G
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC-G 278

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  ++ F   ++RD V ++A+I   A+ G + +A + + +M+  GV  +  T +++L+
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   ALE GK + S I +   +  V + NALI M+A+CGD+ KA +LF +M  R ++S
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG A      EA+ L+++M   GV P  V F+ LLSAC++      G+   + + 
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              GI         +++M  R G + EA    +      + I W ++I+     G  + A
Sbjct: 459 RS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETA 516

Query: 301 ESITKRLIGNEPMHESNYVLLS 322
             + + +  NE +   N    S
Sbjct: 517 YKLFQEM-QNEELEPDNITFAS 537



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 149/286 (52%), Gaps = 3/286 (1%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           + TY  +L+ C     L   K +H  +++   G DI + N L++MY  C   ++   +VF
Sbjct: 27  RATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD-AHQVF 85

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
            EM  RD +SW+++I  YA+ G    A  LF +MQ +G  P++IT +++L+AC     LE
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            GK + S I K    R   + N+L+ M+ KCGD+ +A ++F  ++ R +VS+ +++   A
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
                 E + LF +M   G+ PD V ++ LL A +   ++D+G+     +  + G+   I
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDI 264

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                +V M  R G V  A +   K   + + +++  LI+A    G
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAF-KGTADRDVVVYNALIAALAQHG 309



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 3/161 (1%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           +  T V +L  CT    L   K + + + +  V   + L N LI+M+ KC  V  A ++F
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
           + M  R ++SW S+I+  A  G   +A  LFEEM  AG  P+ + ++ +L+AC     ++
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 231 KGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            G++     +K  +   P++++   ++ M  + G +  A +
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQ 184


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/421 (47%), Positives = 279/421 (66%), Gaps = 5/421 (1%)

Query: 56  GSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C  G +E  R+VF+EM ERD VSW+AMI G     L  +A+ LFR M   G  P+  T
Sbjct: 117 GFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGT 176

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +V+VLSACT  GALE GKWV  F+EK+ +     L  AL+DM+AKCG V+ AL++F  + 
Sbjct: 177 VVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLR 236

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
            R   +W ++I GLAM+G   +A+ +F +M L   V PD+V FVG+L ACSH G VD G+
Sbjct: 237 ARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGK 296

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           E+F ++   +G+   +EHY CMVD+L RSG ++EAH+ I +MP++ + ++WR L+  C  
Sbjct: 297 EHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRL 356

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
              +K+AE++   +   E     ++VLLS++YA + RW     +R  M  +G++KIPG +
Sbjct: 357 HKNVKMAENVISEM---EATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCS 413

Query: 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDAL 413
            +E+D  I+EF+ GDKSH    +I+  L E+G +M++ GYV  T+EV  DI +E+KE AL
Sbjct: 414 SVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQAL 473

Query: 414 NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
             HSEKLAIAF L+  PP   IRIVKNLR C DCHS  K +SKIY+REIVVRDR RFHHF
Sbjct: 474 GYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHF 533

Query: 474 K 474
           +
Sbjct: 534 R 534



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 123/243 (50%), Gaps = 9/243 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G  PN+ T   VL AC G G L  GK VH  V K +   D  +   LV MY  C G
Sbjct: 165 MMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKC-G 223

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            +EL  +VF  +  R++ +W+AMI G A  G S  A+D+FRQM+++G V PDE+T V VL
Sbjct: 224 AVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVL 283

Query: 120 SACTDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            AC+  G ++ GK  E F    +K  V   +     ++D+ A+ G + +A KL   M  +
Sbjct: 284 LACSHAGFVDAGK--EHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMK 341

Query: 177 T-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
             +V W +++ G  +H     A  +  EM EA    D V    L +A      V+  R  
Sbjct: 342 PDVVVWRALLGGCRLHKNVKMAENVISEM-EATCSGDHVLLSNLYAAVGRWNGVEDVRRT 400

Query: 236 FDS 238
             S
Sbjct: 401 MRS 403



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 48/268 (17%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
           S+H    K  F       N  +  Y S  G +   R+VFD M  RD+VS+++MI GYA  
Sbjct: 32  SLHAVCTKLGFLLCTRTNNAFIQGYCSA-GRVTDARRVFDGMPRRDTVSFNSMIHGYAVS 90

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G    A  LF ++    + P  +T  ++++                           G C
Sbjct: 91  GDVGSAQRLFERV----LAPTPVTWTSMVA---------------------------GFC 119

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            A        GDV+ A ++F  M  R +VSW ++I+G   +   +EA+ LF  M+E G  
Sbjct: 120 RA--------GDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171

Query: 211 PDDVAFVGLLSACSHCGLVDKGR--EYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKE 267
           P+    V +LSAC+  G ++ G+    F   K     +   E  G  +VDM  + G V+ 
Sbjct: 172 PNRGTVVSVLSACTGAGALETGKWVHVFVEKKR----LRWDEFLGTALVDMYAKCGAVEL 227

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A E    +    N   W  +I+     G
Sbjct: 228 ALEVFTGLRAR-NTCTWNAMINGLAMNG 254


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/428 (46%), Positives = 283/428 (66%), Gaps = 2/428 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N+++  +  C G +E    +F EM  RD VSW++M+  YA+ G   +A+ LF QM+  GV
Sbjct: 132 NSMLSGFVKC-GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 190

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P E T+V++LSAC  LGAL+ G  + ++I    +  +  +  AL+DM+AKCG +  A +
Sbjct: 191 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 250

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  + +++W ++IAG+A+HG   EA  LF+EM EA V P+D+ FV +LSACSH G+
Sbjct: 251 VFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGM 310

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G++  D M + +GI PK+EHY C++D+L R+G ++EA E I  MP+E NP     L+
Sbjct: 311 VDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALL 370

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
             C   G  +L E + KRLI  +P H   Y+LLS+IYA   +W+   K+R +M   G+ K
Sbjct: 371 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 430

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA-GYVPTTSEVLLDINEE 407
           +PG ++IEL   ++ FV GD SH +S +IY+ L+E+  ++K A GY   T  VLLD+ EE
Sbjct: 431 VPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEE 490

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           DKE AL  HSEKLAIA+ LL       IRIVKNLRVC DCH  TK ISK+Y REI+VRDR
Sbjct: 491 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDR 550

Query: 468 HRFHHFKD 475
           +RFHHF+D
Sbjct: 551 NRFHHFED 558



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 159/299 (53%), Gaps = 15/299 (5%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG--RKV 68
            TYPFV+KAC        G  VH  V+K  F  D ++ N+L+H+Y +   G +LG  +++
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYAN---GKDLGAAKQL 57

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F   S+RD VSW+AMI GY + G       +F +M    VC D I+  T+++    +G +
Sbjct: 58  FSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKI 113

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           +  K     +  +M  R++   N+++  F KCG+V++A  LF  M  R +VSW S++A  
Sbjct: 114 DEAK----RLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACY 169

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A  G+  EA+ALF++M   GV P +   V LLSAC+H G +DKG  +  +  ND  I   
Sbjct: 170 AQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVN 228

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
                 +VDM  + G++  A +    M    + + W T+I+     G +K A+ + K +
Sbjct: 229 SIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGHVKEAQQLFKEM 286



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P + T   +L ACA +G L+ G  +H  +   +   +  V   LV MY  C G
Sbjct: 185 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC-G 243

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L  +VF+ M  +D ++W+ +I G A  G   +A  LF++M+ + V P++IT V +LS
Sbjct: 244 KISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLS 303

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC+  G ++ G K ++       +   V   + +ID+ A+ G +++A++L  +M
Sbjct: 304 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM 357



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 12/212 (5%)

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           +T   V+ AC +      G  V + + K        + N+LI ++A   D+  A +LF  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            + R +VSW ++I G    G       +F+ M    V  D +++  +++  +  G +D+ 
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEA 116

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--A 290
           +  FD M         +  +  M+    + G V+EA     +MP   + + W ++++  A
Sbjct: 117 KRLFDEMPER-----NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLACYA 170

Query: 291 CCARGELKLAESITKRLIGNEPMHESNYVLLS 322
            C +    LA     R +G +P   +   LLS
Sbjct: 171 QCGKPNEALALFDQMRAVGVKPTEATVVSLLS 202


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 307/479 (64%), Gaps = 6/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   VSP+ +T+  V+K+CA +  L +GK VH   +   FG D +VQ  LV  Y  C G
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKC-G 156

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD M E+  V+W++++ G+ + GL+ DAI +F QM+ SG  PD  T V++LS
Sbjct: 157 DMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLS 216

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA+ +G WV  +I  + ++ +V L  ALI+++++CGDV KA ++F  M    + +
Sbjct: 217 ACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA 276

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           WT++I+    HG G +AV LF +M  + G  P++V FV +LSAC+H GLV+ GR  +  M
Sbjct: 277 WTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRM 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN---PIIWRTLISACCARGE 296
              + +IP +EH+ C+VDML R+G + EA+ FIQ++    N   P +W  ++ AC     
Sbjct: 337 TESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRN 396

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
             L   I KRLI  EP +  ++V+LS+IYA   + ++ + IR+ M +  ++K  G ++IE
Sbjct: 397 YDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIE 456

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++N+ Y F  GD+SH ++ EIY  L+ +  + K+ GY P + EV+  + EE+KE AL  H
Sbjct: 457 VENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYH 516

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLA+AF LLKT   + I +VKNLR+C DCHSA K+IS + NR+I+VRD+ RFHHF++
Sbjct: 517 SEKLAVAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQN 574



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 144/302 (47%), Gaps = 6/302 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+ N   Y  +++A   +  L   + VH  ++   +G    +   L+ +  S    I   
Sbjct: 5   VAANSAAYEAIVRAGPRVKQL---QQVHAHLIVTSYGRSRSLLTKLITLACSARA-IAYT 60

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             +F  +   D   ++++I   ++L L    +  +R+M  S V P   T  +V+ +C DL
Sbjct: 61  HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL++GK V              +  AL+  ++KCGD++ A ++F  M  +++V+W S++
Sbjct: 121 SALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLV 180

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G   +G   +A+ +F +M E+G  PD   FV LLSAC+  G +  G      + ++ G+
Sbjct: 181 SGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSE-GL 239

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              ++    ++++  R G V +A E   KM  E N   W  +ISA    G  K A  +  
Sbjct: 240 DVNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHGYGKQAVDLFN 298

Query: 306 RL 307
           ++
Sbjct: 299 KM 300


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/465 (43%), Positives = 292/465 (62%), Gaps = 2/465 (0%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           T   V++ CA + DL+ G  +H   +K  F  D+ V NTL+ MY  C G I    + F+E
Sbjct: 327 TLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKC-GIINGAMRFFNE 385

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M  RD+VS++A+I GY + G S + + +F +MQ+SG+ P++ T+ +VL AC  L  L  G
Sbjct: 386 MDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG 445

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
                +           +CNALIDM+AKCG +D A K+F  M+ R IVSW ++I    +H
Sbjct: 446 SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIH 505

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G GLEA+ LF+ M   G+ PDDV F+ L+SACSH GLV +G+ +F++M  DFGIIP++EH
Sbjct: 506 GIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEH 565

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           Y CMVD+L R+G  KE H FI+KMP+E +  +W  L+SAC     ++L E ++K++    
Sbjct: 566 YACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG 625

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD-KS 370
           P    N+VLLS++Y+ + RW+   ++R    ++G +K PG + IE+   ++ F+ G  +S
Sbjct: 626 PESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRS 685

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
           H Q  +I   LDE+  +MK+ GY   +S V  D+ EE+KE  L  HSEKLAIAF +L   
Sbjct: 686 HPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLS 745

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           P   I + KNLRVC DCH+A KFIS +  R+I VRD  RFHHFKD
Sbjct: 746 PDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKD 790



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML YG++PN+FT+PFVLKAC+ + + + G+ +H  + + +   +++V   LV  Y  C G
Sbjct: 110 MLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKC-G 168

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI-DLFRQMQISGVCPDEITMVTVL 119
            ++  ++VFD+M +RD V+W++MI G++    S D +  L  QMQ + V P+  T+V VL
Sbjct: 169 CLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVL 227

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
            A   + +L  GK +  F  ++     V +   ++D++ KC  +D A ++F  M   +  
Sbjct: 228 PAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE 287

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEML 205
           V+W++++    +     EA+ LF ++L
Sbjct: 288 VTWSAMVGAYVVCDFMREALELFCQLL 314



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLK-FQFGDDIHVQN------TLVHMYGSCEGGIELGRKV 68
           +L++C     L  GK +H  +LK      + ++ N       LV +Y +C   +++ R V
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSE-LKIARHV 73

Query: 69  FDEMSER--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           FD+M  R  + V W+ +I  YA  G   +AIDL+ +M   G+ P+  T   VL AC+ L 
Sbjct: 74  FDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALK 133

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
               G+ +   I++  +  +V +  AL+D +AKCG +D A ++F  M+ R +V+W S+I+
Sbjct: 134 EASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMIS 193

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G ++H    + VA     ++  V P+    VG+L A +    +  G+E         G +
Sbjct: 194 GFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKE-IHGFCVRRGFV 252

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             +     ++D+  +   +  A      M I  N + W  ++ A
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/473 (42%), Positives = 298/473 (63%), Gaps = 5/473 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL---KFQFGDDIHVQNTLVHMYGSCEGGI 62
           V PN  T+  V  AC  I DL  G+ +H   +   + +  + I ++N L++MY  C G +
Sbjct: 83  VEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAI-LENALLNMYVRC-GSL 140

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E  RKVFD M   D+ SW++MI          +A++LF +M + G+ P  +T+ +VL+AC
Sbjct: 141 EEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNAC 200

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
              GAL+VGK + S ++    + SV    AL+DM+AKCG ++ + K+F +M  R  VSWT
Sbjct: 201 ACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWT 260

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++IA LA HG+G EA+ LF+EM   G+  D   F+ +L ACSH GL+ +  E+F SM  D
Sbjct: 261 AMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVED 320

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P   HY   +D + R+GR+++A E I  MP     + W+TL++AC    + + A  
Sbjct: 321 YAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATK 380

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + + L    P     Y LL ++YA   R+  + ++R+ M  RG+KK+PG + IE+ N+++
Sbjct: 381 VAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVH 440

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
           EFV GD++H    EI   L+++G +M++AGYVP T +VL  +NEE+KE  +  HSEKLAI
Sbjct: 441 EFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAI 500

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF L+ TPPGTP+ IVKNLRVC+DCH+ATK I+KI  R IVVRD HRFHHF+D
Sbjct: 501 AFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFED 553



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 6/271 (2%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G+ +H  +    F      QN LV MY  C G ++  R +F+ + ER  VSWSAMIG YA
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKC-GCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 89  RLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESF--IEKQMVNR 145
             G   +A+ LF +M+  G V P+ +T   V +AC  +  LE G+ + +      ++ + 
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           +  L NAL++M+ +CG +++A K+F +M+     SWTS+I     +   LEA+ LF  M 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+PP  V    +L+AC+  G +  G++   S  +  G    +     ++DM  + G +
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGSL 241

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           + + +    M    N + W  +I+A    G+
Sbjct: 242 ECSSKVFTAMETR-NSVSWTAMIAALAQHGQ 271



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P   T   VL ACA  G L +GK +H  +    F   +  Q  L+ MY  C G +E 
Sbjct: 185 GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKC-GSLEC 243

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF  M  R+SVSW+AMI   A+ G   +A++LF++M + G+  D  T + VL AC+ 
Sbjct: 244 SSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSH 303

Query: 125 LGAL-EVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSW 181
            G + E  ++  S +E   +  +    C AL D   + G +  A +L  SM      ++W
Sbjct: 304 AGLIKESLEFFHSMVEDYAIAPTETHYCRAL-DTIGRAGRLQDAEELIHSMPFHPETLTW 362

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
            +++    +H +   A  +  E+L    P D +A+  L
Sbjct: 363 KTLLNACRIHSQAERATKV-AELLSKLAPEDSMAYTLL 399



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 49/260 (18%)

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +E G+ + S +     +R+    N L+ M+AKCG +D+A  +F  +  RT+VSW+++I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 188 LAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACS---------------------- 224
            A+HGRG EA+ LF  M   G V P+ + F G+ +AC                       
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 225 ---------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
                           CG +++ R+ FD+M +     P    +  M+     +  + EA 
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDH-----PDAFSWTSMITACTENCELLEAL 175

Query: 270 EFIQKMPIEANP---IIWRTLISACCARGELKLAESITKRLIGNEPMHES--NYVLLSHI 324
           E   +M +E  P   +   ++++AC   G LK+ + I  RL  +   H S      L  +
Sbjct: 176 ELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDAS-GFHSSVLAQTALLDM 234

Query: 325 YAKLLRWEKKTKIREVMDKR 344
           YAK    E  +K+   M+ R
Sbjct: 235 YAKCGSLECSSKVFTAMETR 254


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/471 (42%), Positives = 301/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   ++ T     KAC  +  L+ GK +H   +K  F  D+HV + ++ MY  C   +  
Sbjct: 25  GEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA 84

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G  VF+ +S  D V+W++MI G    G    A+ ++ +M+ S V PDE T  T++ A + 
Sbjct: 85  G-IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSC 143

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           + ALE G+ + + + K        +  +L+DM+AKCG+++ A +LF+ MN R I  W ++
Sbjct: 144 VTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAM 203

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + GLA HG   EAV LF+ M   G+ PD V+F+G+LSACSH GL  +  EY  SM ND+G
Sbjct: 204 LVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYG 263

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEHY C+VD L R+G V+EA + I+ MP +A+  I R L+ AC  +G+++  + + 
Sbjct: 264 IEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVA 323

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            RL   EP   + YVLLS+IYA   RW+  T  R++M ++ +KK PG + I++ N ++ F
Sbjct: 324 ARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLF 383

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V  D+SH Q+  IY+ ++EM + +++ GYVP T  VLLD+ +E+KE +L  HSEKLAIA+
Sbjct: 384 VVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAY 443

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TP  T IR++KNLRVC DCH+A K+ISK++ REIV+RD +RFHHF+D
Sbjct: 444 GLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRD 494



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+++T+  ++KA + +  L  G+ +H  V+K     D  V  +LV MY  C G
Sbjct: 122 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   ++F +M+ R+   W+AM+ G A+ G + +A++LF+ M+  G+ PD ++ + +LS
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G   E  +++ S      +   +   + L+D   + G V +A K+  +M  +   
Sbjct: 241 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           S    + G       +E        L A  P D  A+V L
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLL 340



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           M+ GY        A++LF  +  SG   D+IT+ T   AC  L  L+ GK + +   K  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
            +  + + + ++DM+ KCGD+  A  +F  ++    V+WTS+I+G   +G   +A+ ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            M ++ V PD+  F  L+ A S    +++GR+ + + +K D    P +     +VDM  +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAK 178

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            G +++A+   +KM +  N  +W  ++      G  + A ++ K +
Sbjct: 179 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSM 223


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 313/484 (64%), Gaps = 12/484 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E    P+  T+P VLKACA    L  GK VH  VLK  F  D ++ N+LVH Y +C G
Sbjct: 122 MEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  K+F +MSER+ VSW+ MI  YA+ G+   A+ +F +MQ     PD  TM +V+S
Sbjct: 181 CLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVHD-PDGYTMQSVIS 239

Query: 121 ACTDLGALEVGKWVESFI----EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           AC  LGAL +G WV ++I    +K MV+  V +   L+DM+ K G+++ A ++F SM  R
Sbjct: 240 ACAGLGALSLGLWVHAYILKKCDKNMVD-DVLVNTCLVDMYCKSGELEIAKQVFESMAFR 298

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREY 235
            + +W S+I GLAMHG    A+  +  M++   + P+ + FVG+LSAC+H G+VD+G  +
Sbjct: 299 DLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVH 358

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR- 294
           FD M  ++ + P++EHYGC+VD+  R+GR+ EA   + +M I+ + +IWR+L+ ACC + 
Sbjct: 359 FDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQY 418

Query: 295 GELKLAESITKRLIGNEPMHESN--YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
             ++L+E + K++  +E    S+  YVLLS +YA   RW     +R++M ++G+ K PG 
Sbjct: 419 ASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGC 478

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDINEEDKED 411
           ++IE+D  ++EF  GD +H +S+ IY+++ E+  K++  GY+P  S   ++D   + K +
Sbjct: 479 SIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLN 538

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
            L  HSE+LAIAF +L + P  PIR+ KNLRVCNDCH  TK IS+IYN EI+VRDR RFH
Sbjct: 539 TLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFH 598

Query: 472 HFKD 475
           HFKD
Sbjct: 599 HFKD 602



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 10/271 (3%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST---DAIDLFRQMQI 105
           N L H     +  +    +VF      +S  W+ +I  YAR   +     A++L++ M  
Sbjct: 62  NILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMT 121

Query: 106 ---SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
                  PD  T   VL AC    +L  GK V + + K        +CN+L+  +A CG 
Sbjct: 122 MEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGC 181

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +D A K+F  M+ R  VSW  +I   A  G    A+ +F EM      PD      ++SA
Sbjct: 182 LDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISA 240

Query: 223 CSHCGLVDKGR--EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           C+  G +  G     +   K D  ++  +    C+VDM C+SG ++ A +  + M    +
Sbjct: 241 CAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFR-D 299

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNE 311
              W ++I      GE K A +   R++  E
Sbjct: 300 LNAWNSMILGLAMHGEAKAALNYYVRMVKVE 330


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/462 (43%), Positives = 304/462 (65%), Gaps = 2/462 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           V+ AC+ +    L +S+H  V+K  F   + V NTL+  Y    EGG+ + RK+FD++ +
Sbjct: 189 VISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKW 133
           +D VS+++++  YA+ G+S +A D+FR++    V   + IT+ TVL A +  GAL +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKC 308

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + +  +   V +  ++IDM+ KCG V+ A   F  M  + + SWT++IAG  MHG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A+ LF  M+++GV P+ + FV +L+ACSH GL D G  +F++MK  FG+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYG 428

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           CMVD+L R+G +++A++ IQKM +E + IIW +L++AC     ++LAE    RL   +P 
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPS 488

Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
           +   Y+LLSHIYA   RW+   ++R  M  RG+ K PG +L+EL+ E++ F+ GD+ H Q
Sbjct: 489 NCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 374 SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT 433
            ++IYE L E+ RK+ +AGYV  TS V  D++EE+KE  L  HSEKLAIAF ++ T PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608

Query: 434 PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + +VKNLRVC+DCH+  K ISKI +RE VVRD  RFHHFKD
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 169/337 (50%), Gaps = 18/337 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P + ++P  +KAC+ + D+  GK  H     F +  DI V + L+ MY +C G
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTC-G 125

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPDEIT 114
            +E  RKVFDE+ +R+ VSW++MI GY   G + DA+ LF+ + I      + +  D + 
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMG 185

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--VDKALKLFRS 172
           MV+V+SAC+ + A  + + + SF+ K+  +R V + N L+D +AK G+  V  A K+F  
Sbjct: 186 MVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDK 231
           +  +  VS+ S+++  A  G   EA  +F  ++ E  V  + +    +L A SH G +  
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRI 305

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+   D +    G+   +     ++DM C+ GRV+ A     +M    N   W  +I+  
Sbjct: 306 GKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMK-NKNVRSWTAMIAGY 363

Query: 292 CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
              G    A  +   +I  G  P    NY+    + A
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRP----NYITFVSVLA 396



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 6/155 (3%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D  SW+++I   AR G S +A+  F  M+   + P   +    + AC+ L  +  GK   
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
                      + + +ALI M++ CG ++ A K+F  +  R IVSWTS+I G  ++G  L
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 196 EAVALFEEML------EAGVPPDDVAFVGLLSACS 224
           +AV+LF+++L      +A +  D +  V ++SACS
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACS 194



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
           R ++   + SW SVIA LA  G   EA+  F  M +  + P   +F   + ACS    + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIF 93

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G++        FG    I     ++ M    G++++A +   ++P + N + W ++I  
Sbjct: 94  SGKQT-HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRG 151

Query: 291 CCARGELKLAESITKRLIGNE 311
               G    A S+ K L+  E
Sbjct: 152 YDLNGNALDAVSLFKDLLIEE 172


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 300/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV P+ +    VL AC  +GDL+ G+ +   + + +   +  V+ TLV++Y  C G
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC-G 261

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M E+D V+WS MI GYA      + I+LF QM    + PD+ ++V  LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGAL++G+W  S I++     ++ + NALIDM+AKCG + +  ++F+ M  + IV 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
             + I+GLA +G    + A+F +  + G+ PD   F+GLL  C H GL+  G  +F+++ 
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + +   +EHYGCMVD+  R+G + +A+  I  MP+  N I+W  L+S C    + +LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E++ K LI  EP +  NYV LS+IY+   RW++  ++R++M+K+GMKKIPG + IEL+ +
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+  DKSH  S +IY  L+++G +M+  G+VPTT  V  D+ EE+KE  L  HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A  L+ T  G  IR+VKNLRVC DCH   K ISKI  REIVVRD +RFH F +
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTN 676



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 168/301 (55%), Gaps = 3/301 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           ++G+  + FT+P VLKAC       LG  +H  V+K  F  D+    +L+ +Y S  G +
Sbjct: 104 KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIY-SGSGRL 162

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               K+FDE+ +R  V+W+A+  GY   G   +AIDLF++M   GV PD   +V VLSAC
Sbjct: 163 NDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSAC 222

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +G L+ G+W+  ++E+  + ++  +   L++++AKCG ++KA  +F SM  + IV+W+
Sbjct: 223 VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWS 282

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A +    E + LF +ML+  + PD  + VG LS+C+  G +D G E+  S+ + 
Sbjct: 283 TMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDR 341

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
              +  +     ++DM  + G +    E  ++M  E + +I    IS     G +KL+ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFA 400

Query: 303 I 303
           +
Sbjct: 401 V 401



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 14/217 (6%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++++I G+    L  + +DLF  ++  G+     T   VL ACT   + ++G  + S + 
Sbjct: 79  YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K   N  V    +L+ +++  G ++ A KLF  +  R++V+WT++ +G    GR  EA+ 
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSM---KNDFGIIPKIEHYG 253
           LF++M+E GV PD    V +LSAC H G +D G    +Y + M   KN F          
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFV-------RT 251

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +V++  + G++++A      M +E + + W T+I  
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/474 (42%), Positives = 301/474 (63%), Gaps = 1/474 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L   V PN+FT+  VL+ACA +  LNLG  +H  V+K     D+ V N L+ +Y  C G 
Sbjct: 130 LHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKC-GR 188

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E   ++F E   R+ V+W+ +I G+ +LG    A+ LF  M    V   E+T  + L A
Sbjct: 189 MENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRA 248

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  L ALE G  + S   K   ++ + + NALIDM+AKCG +  A  +F  MN +  VSW
Sbjct: 249 CASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSW 308

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I+G +MHG G EA+ +F++M E  V PD + FVG+LSAC++ GL+D+G+ YF SM  
Sbjct: 309 NAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQ 368

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           D GI P IEHY CMV +L R G + +A + I ++P + + ++WR L+ AC    +++L  
Sbjct: 369 DHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGR 428

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
              +R++  EP  ++ +VLLS++YA   RW+    +R+ M ++G+KK PG + IE    +
Sbjct: 429 ISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTV 488

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD SH + + I  ML+ +  K KKAGY+P  + VLLD+ +E+KE  L  HSE+LA
Sbjct: 489 HSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLA 548

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++F +++TP G+PIRI+KNLR+C DCH+A K ISK+  REIVVRD +RFHHF++
Sbjct: 549 LSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQE 602



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 9/294 (3%)

Query: 6   VSPNKFT---YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           VSP++F    Y   L+ C    + + GK +H  +LK     D+   N L++MY   +   
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   K+FDEM ER+++S+  +I GYA      +AI+LF ++    V P++ T  +VL AC
Sbjct: 91  D-ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH-REVLPNQFTFASVLQAC 148

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +  L +G  +   + K  ++  V + NAL+D++AKCG ++ +++LF     R  V+W 
Sbjct: 149 ATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWN 208

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKN 241
           +VI G    G G +A+ LF  MLE  V   +V +   L AC+    ++ G +    ++K 
Sbjct: 209 TVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKT 268

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            F     I     ++DM  + G +K+A      M  + + + W  +IS     G
Sbjct: 269 TFD--KDIVVTNALIDMYAKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMHG 319



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLEY V   + TY   L+ACA +  L  G  +H   +K  F  DI V N L+ MY  C G
Sbjct: 230 MLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKC-G 288

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R VFD M+++D VSW+AMI GY+  GL  +A+ +F +MQ + V PD++T V VLS
Sbjct: 289 SIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLS 348

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC + G L+ G+ +  S I+   +   +     ++ +  + G +DKA+KL   +  + ++
Sbjct: 349 ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSV 408

Query: 179 VSWTSVIAGLAMHG 192
           + W +++    +H 
Sbjct: 409 MVWRALLGACVIHN 422



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEIT---MVTVLSACTDLGALEVGKWVESFIEKQMV 143
           ++R G S  +  L ++  +  V P E         L  C        GK +   I K+  
Sbjct: 11  FSRRGFSVQSAKLTQEF-VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGG 69

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
              +   N L++M+ K   +  A KLF  M  R  +S+ ++I G A   R LEA+ LF  
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
            L   V P+   F  +L AC+    ++ G +    +    G+   +     ++D+  + G
Sbjct: 130 -LHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVFVSNALMDVYAKCG 187

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLI 288
           R++ + E   + P   N + W T+I
Sbjct: 188 RMENSMELFAESP-HRNDVTWNTVI 211


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/466 (43%), Positives = 294/466 (63%), Gaps = 1/466 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           NK T    L A A I  L++GK +HG +++     D  V  +L+ MYG C G IE  R +
Sbjct: 250 NKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKC-GSIEEARYI 308

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M ERD VSW+ MI  Y + G   +   LFR +  S + P++ T   VL+AC DL A 
Sbjct: 309 FDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAE 368

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           ++GK + +++ +   +      +AL+ M++KCGD++ A  +F  +    + SWTS++ G 
Sbjct: 369 DLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGY 428

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A HG+  +A+  FE +L++G  PD +AF+G+LSAC+H GLVDKG EYF S+K   G+   
Sbjct: 429 AQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRT 488

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           I+HY C++D+L R+G+  EA   I +MPI+ +  IW  L+  C   G L+LA+   K L 
Sbjct: 489 IDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLF 548

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EP + + YV L++IYA      ++  IRE MD RG+ K PG + IE+  E++ F  GD
Sbjct: 549 EIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGD 608

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
            SH +SKEI E L E+ ++MK+ GYVP T+ VL D+  E KE+ L+ HSEKLA+AF ++ 
Sbjct: 609 NSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIIS 668

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           TP GTPI++ KNLR C DCH+A KFIS I  R+I+VRD +RFH F+
Sbjct: 669 TPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFE 714



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 143/321 (44%), Gaps = 36/321 (11%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P    Y  +LK C     L  GK VH A +K      +++ N L+ MY  C G +    K
Sbjct: 117 PYASIYLTLLKFCLKQRALKEGKQVH-AHIKTSGSIGLYISNRLLDMYAKC-GSLVDAEK 174

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVC----PDEI 113
           VFDEM  RD  SW+ MI GY + G    A +LF +M           ISG      P+E 
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEA 234

Query: 114 TMVTVL---------SACT---------DLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
             +  L         + CT          + +L +GK +   I +  ++    +  +L+D
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ KCG +++A  +F  M  R +VSWT++I     +GR  E  ALF  ++ + + P+D  
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F G+L+AC+     D G++    M    G          +V M  + G ++ A    + +
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVR-VGFDSFSSAASALVHMYSKCGDIENAKSVFEIL 413

Query: 276 PIEANPIIWRTLISACCARGE 296
           P + +   W +L+      G+
Sbjct: 414 P-QPDLFSWTSLLVGYAQHGQ 433



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++   + PN FT+  VL ACA +   +LGK +H  +++  F       + LVHMY  C G
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  + VF+ + + D  SW++++ GYA+ G    A+  F  +  SG  PD I  + VLS
Sbjct: 402 DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLS 461

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC   G ++ G ++  S  EK  + R++     +ID+ A+ G   +A  +   M  +   
Sbjct: 462 ACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDK 521

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
             W +++ G  +HG  LE      + L    P +   +V L +  +  G+
Sbjct: 522 YIWAALLGGCRIHG-NLELAKRAAKSLFEIEPENPATYVTLANIYASAGM 570



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 16/243 (6%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKAL 167
           P     +T+L  C    AL+ GK V + I+    + S+GL   N L+DM+AKCG +  A 
Sbjct: 117 PYASIYLTLLKFCLKQRALKEGKQVHAHIK---TSGSIGLYISNRLLDMYAKCGSLVDAE 173

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           K+F  M  R + SW  +I+G    G   +A  LF++M       D+ ++  ++S C    
Sbjct: 174 KVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHN 229

Query: 228 LVDKGREYFDSM-KNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             ++  E +  M K+D+    K  I         +      K+ H  I +M ++++ ++W
Sbjct: 230 RPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVW 289

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI-REVMDK 343
            +L+      G ++ A  I  ++   E     ++  + H Y K  R E+   + R +M+ 
Sbjct: 290 CSLLDMYGKCGSIEEARYIFDKM---EERDVVSWTTMIHTYLKNGRREEGFALFRHLMNS 346

Query: 344 RGM 346
             M
Sbjct: 347 NIM 349


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 312/469 (66%), Gaps = 5/469 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  T  F LKACA     +    +H  +L+F F  D+ +Q TL+  Y    G ++L +K+
Sbjct: 102 DALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKI-GDLDLAQKL 160

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGA 127
           FDEM + D  SW+A+I G+A+     DAI  F++M++ G + P+ +T+   L AC+ LGA
Sbjct: 161 FDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGA 220

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIA 186
           L+ G+ V  +I ++ ++ +V +CN +IDM+AKCG +DKA  +F +M   +++++W ++I 
Sbjct: 221 LKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIM 280

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
             AMHG G +A+ LFE++  +G+ PD V+++ +L AC+H GLV+ G + F+SM    G+ 
Sbjct: 281 AFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLE 339

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P I+HYG MVD+L R+GR+KEA++ +  +P   N ++W+TL+ AC   G++++AE  +++
Sbjct: 340 PNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRK 398

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+    +    +VLLS++YA   RW+   ++R+ M +R +KK PG + IE+  ++Y+FV 
Sbjct: 399 LVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVN 458

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD+SH   +EIY  LDE+  ++K  GY   TS VL DI +EDKE+AL  HSEKLA+AF L
Sbjct: 459 GDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGL 518

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             T  GTPI+++KNLR+C DCH   K ISKIY REI+VRDR RFH FK+
Sbjct: 519 TCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKE 567



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN  T    L AC+ +G L  G+SVH  +++ +   ++ V N ++ MY  C G ++  
Sbjct: 201 LRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKC-GSMDKA 259

Query: 66  RKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             VF+ M  ++  ++W+ MI  +A  G    A+DLF ++  SG+ PD ++ + VL AC  
Sbjct: 260 YWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNH 319

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G +E G  + + + ++ +  ++    +++D+  + G + +A  +  S+    +V W ++
Sbjct: 320 AGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTL 379

Query: 185 IAGLAMHG 192
           +     +G
Sbjct: 380 LGACRTYG 387


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/501 (40%), Positives = 306/501 (61%), Gaps = 29/501 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVH------------------------GAV 36
           +L     P+ F+Y  ++K  +  G ++L   +H                          +
Sbjct: 44  LLRLPTPPDPFSYNTIIKHVSPTGAISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSLI 103

Query: 37  LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96
            K  F  +I VQN L++ YGS  G +++  K+FDEM  RD VSWS +I    +  L  +A
Sbjct: 104 FKLGFDTNIFVQNALINAYGS-RGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEA 162

Query: 97  IDLFRQMQISGV----CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           + +F+QMQ+         D   M++V+SA + LG +E+G WV SFI +  +  +V L  A
Sbjct: 163 LSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTA 222

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI+M+++CG +D+++K+F  M  R +V+WT++I GLA+HGR  EA+ +F EM E+G+ PD
Sbjct: 223 LINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPD 282

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
              F+G+L ACSH GLV+ G   F+SM+++FGI P +EHYGCMVD+L R+G + EA +F+
Sbjct: 283 GALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFV 342

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           ++MP++ N +IWRTL+ AC     L LAE   +R+I  +P H+ +YVLLS+ Y ++  W 
Sbjct: 343 EEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWG 402

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
            K  +R  M +  + K PG + + +D  ++EFV GD  H Q +EI + L  +   +K  G
Sbjct: 403 GKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGG 462

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           Y P TS VL DI +E+KE  L  HSEKLA+AF LL       IR++KNLR+C DCH   K
Sbjct: 463 YTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMK 522

Query: 453 FISKIYNREIVVRDRHRFHHF 473
             S I++R+I++RDR+RFHHF
Sbjct: 523 HASGIFDRDIIIRDRNRFHHF 543


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 299/475 (62%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  +L A A +        +H  V+K  + +   V   L   Y    G
Sbjct: 387 MRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKI-G 441

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                 K+F+ + E+D V+WSAM+ GYA++G    A+ +F Q+   GV P+E T  +VL+
Sbjct: 442 DANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLN 501

Query: 121 ACT-DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC     ++E GK   S   K   + ++ + +AL+ M+AK G+++ A ++F+    R +V
Sbjct: 502 ACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLV 561

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG G +++ +FEEM    +  D + F+G++SAC+H GLV++G+ YFD M
Sbjct: 562 SWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLM 621

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ I+P +EHY CMVD+  R+G +++A + I KMP  A   IWRTL++AC     ++L
Sbjct: 622 VKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQL 681

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   ++LI  +P   + YVLLS+IYA    W+++ K+R++MD + +KK  G + IE+ N
Sbjct: 682 GELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKN 741

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + + F+ GD SH QS  IY  L+E+  ++K AGY P T  VL D+ EE KE  L++HSE+
Sbjct: 742 KTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSER 801

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF L+ TPPGTPI+IVKNLRVC DCH+  K ISKI  R+IVVRD +RFHHFK
Sbjct: 802 LAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFK 856



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 170/363 (46%), Gaps = 38/363 (10%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VLK C  + D  +GK VH   +K  F +D+ V  +LV MY   E  +E G +VFDEM  +
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES-VEDGERVFDEMRVK 156

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW++++ GY + GL+  A+ LF QMQ+ G+ P+  T   VL      GA+E G  V 
Sbjct: 157 NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           + + K  ++ ++ + N++++M++K   V  A  +F SM  R  VSW S+IAG   +G  L
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGREYFDSMKNDFG 244
           EA  LF  M   GV      F  ++  C+           HC ++  G ++  ++K    
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM 336

Query: 245 I--------------------IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA---NP 281
           +                    +  +  +  ++    ++GR   A     +M  E    N 
Sbjct: 337 VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNH 396

Query: 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
             + T+++A  A    ++   + K    N P   S    LS  Y+K+    +  KI E++
Sbjct: 397 FTYSTILTANAAVSPSQIHALVVKTNYENSP---SVGTALSDSYSKIGDANEAAKIFELI 453

Query: 342 DKR 344
           D++
Sbjct: 454 DEK 456



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 10/311 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN FT+  VL   A  G +  G  VH  V+K      I V N++V+MY S    +  
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY-SKSLMVSD 246

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + VFD M  R++VSW++MI G+   GL  +A +LF +M++ GV   +    TV+  C +
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTS 183
           +  +   K +   + K   +  + +  AL+  ++KC ++D A KLF  M+G + +VSWT+
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+G   +GR   A+ LF +M   GV P+   +  +L+A +    V   + +   +K ++
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA---AVSPSQIHALVVKTNY 423

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
              P +     + D   + G   EA +  + +  E + + W  ++S     G+++ A  I
Sbjct: 424 ENSPSVG--TALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSGYAQMGDIEGAVKI 480

Query: 304 TKRLI--GNEP 312
             +L   G EP
Sbjct: 481 FLQLAKEGVEP 491



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 2/230 (0%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +++FDE  ++     + ++  ++R   + +A++LF  ++ SG   D  ++  VL  C  L
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
               VGK V     K      V +  +L+DM+ K   V+   ++F  M  + +VSWTS++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG   +G   +A+ LF +M   G+ P+   F  +L   +  G V+KG +   +M    G+
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGL 224

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              I     MV+M  +S  V +A      M    N + W ++I+     G
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNG 273


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 301/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+SP+ FT   +L ACA  G L  GK VH  + + +   D+ V N L+ MY  C G
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF EM  +D VSW+ MIGGY++  L  +A++LF +MQ +   P+ ITM  +L 
Sbjct: 402 SMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILP 460

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE G+ +   I +   +    + NAL+DM+ KCG +  A  LF  +  + +VS
Sbjct: 461 ACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVS 520

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+A F EM  +G+ PD+V+F+ +L ACSH GL+D+G  +F+ M+
Sbjct: 521 WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMR 580

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N+  I PK EHY C+VD+L R+G + +A++FI+ MPIE +  IW  L+  C    ++KLA
Sbjct: 581 NNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLA 640

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + + +   EP +   YVLL++IYA+  +WE+  K+RE + +RG++K PG + IE+  +
Sbjct: 641 EKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGK 700

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD SH  + +I  +L +   +MK+ G+ P     L+  ++ +KE AL  HSEK+
Sbjct: 701 VHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKI 760

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF +L  PPG  +R+ KNLRVC DCH   KF+SK+  R+I++RD +RFHHFKD
Sbjct: 761 AMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKD 815



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 161/291 (55%), Gaps = 6/291 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G++ +  T   V+  C+  G L LG+++HG  +K  FG ++ + N L+ MY S  G
Sbjct: 242 MLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMY-SKSG 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF+ M ER  VSW++MI GYAR GLS  ++ LF +M+  G+ PD  T+ T+L 
Sbjct: 301 NLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILH 360

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G LE GK V ++I++  +   + + NAL+DM+AKCG +  A  +F  M  + IVS
Sbjct: 361 ACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS 420

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W ++I G + +    EA+ LF EM +    P+ +    +L AC+    +++G+E     +
Sbjct: 421 WNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHIL 479

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N F +   + +   +VDM  + G +  A      +P E + + W  +I+ 
Sbjct: 480 RNGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAG 527



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 137/227 (60%), Gaps = 2/227 (0%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E  RK+FDE+ +RD +SW++MI GY   GLS   +DLF QM + G+  D  TMV+V++ 
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C++ G L +G+ +  +  K    + + L N L+DM++K G+++ A+++F +M  R++VSW
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+IAG A  G    +V LF EM + G+ PD      +L AC+  GL++ G++  + +K 
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  +   +     ++DM  + G + +AH    +M ++ + + W T+I
Sbjct: 381 N-KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMI 425



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 57/252 (22%)

Query: 98  DLFRQMQISGVCP----DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
           +L R M++    P    +  T  +VL  C DL +++ G+ + S I+   V     L + L
Sbjct: 83  NLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKL 142

Query: 154 IDMFAKCGD-------------------------------------------------VD 164
           + M+  CGD                                                 V+
Sbjct: 143 VFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE 202

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A KLF  +  R ++SW S+I+G   +G   + + LFE+ML  G+  D    V +++ CS
Sbjct: 203 SARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCS 262

Query: 225 HCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           + G++  GR     ++K  FG   ++    C++DM  +SG +  A +  + M  E + + 
Sbjct: 263 NTGMLLLGRALHGYAIKASFG--KELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVS 319

Query: 284 WRTLISACCARG 295
           W ++I+     G
Sbjct: 320 WTSMIAGYAREG 331


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 296/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G   + FT   V K C  +  +N GK VH   +K  +  D+ V + ++ MY  C G
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC-G 566

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +  FD +   D V+W+ MI G    G    A  +F QM++ GV PDE T+ T+  
Sbjct: 567 DMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAK 626

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L ALE G+ + +   K        +  +L+DM+AKCG +D A  LF+ +    I +
Sbjct: 627 ASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA 686

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ GLA HG G E + LF++M   G+ PD V F+G+LSACSH GLV +  ++  SM 
Sbjct: 687 WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMH 746

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P+IEHY C+ D L R+G VK+A   I+ M +EA+  ++RTL++AC  +G+ +  
Sbjct: 747 GDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETG 806

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + +  +L+  EP+  S YVLLS++YA   +W++    R +M    +KK PG + IE+ N+
Sbjct: 807 KRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNK 866

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV  D+S+ Q++ IY  + +M R +K+ GYVP T   L+D+ EE+KE AL  HSEKL
Sbjct: 867 IHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKL 926

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF LL TPP TPIR++KNLRVC DCH+A K+I+K+YNREIV+RD +RFH FKD
Sbjct: 927 AVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKD 981



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 152/316 (48%), Gaps = 9/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V  ++ T+  +L     +  L LG+ VH   LK      + V N+L++MY     
Sbjct: 306 MVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 365

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R VFD MSERD +SW+++I G A+ GL  +A+ LF Q+   G+ PD+ TM +VL 
Sbjct: 366 -FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           A + L   L + K V     K        +  ALID +++   + +A  LF   N   +V
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLV 483

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +W +++AG      G + + LF  M + G   DD     +   C     +++G++ +  +
Sbjct: 484 AWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYA 543

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K+ + +   +     ++DM  + G +  A      +P+  + + W T+IS C   GE +
Sbjct: 544 IKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEE 600

Query: 299 LAESITK--RLIGNEP 312
            A  +    RL+G  P
Sbjct: 601 RAFHVFSQMRLMGVLP 616



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 9/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           +L  G+ P+++T   VLKA + + + L+L K VH   +K     D  V   L+  Y    
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
              E   ++  E    D V+W+AM+ GY +       + LF  M   G   D+ T+ TV 
Sbjct: 467 CMKE--AEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C  L A+  GK V ++  K   +  + + + ++DM+ KCGD+  A   F S+     V
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDV 584

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +WT++I+G   +G    A  +F +M   GV PD+     L  A S    +++GR+ + ++
Sbjct: 585 AWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANA 644

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K +    P +     +VDM  + G + +A+   +++ +  N   W  ++      GE K
Sbjct: 645 LKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGK 701

Query: 299 LAESITKRL--IGNEP 312
               + K++  +G +P
Sbjct: 702 ETLQLFKQMKSLGIKP 717



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
            DL LGK  H  +L F+   +  + N L+ MY  C G +   R+VFD+M +RD VSW+++
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKC-GSLTYARRVFDKMPDRDLVSWNSI 111

Query: 84  IGGYARLGLST-----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           +  YA+           A  LFR ++   V    +T+  +L  C   G +   +    + 
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K  ++    +  AL++++ K G V +   LF  M  R +V W  ++      G   EA+
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231

Query: 199 ALFEEMLEAGVPPDDVAF 216
            L      +G+ P+++  
Sbjct: 232 DLSSAFHSSGLNPNEITL 249



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%)

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           Y   G  +  +  F  M  S V  D++T + +L+    + +L +G+ V     K  ++  
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + N+LI+M+ K      A  +F +M+ R ++SW SVIAG+A +G  +EAV LF ++L 
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409

Query: 207 AGVPPDDVAFVGLLSACS 224
            G+ PD      +L A S
Sbjct: 410 CGLKPDQYTMTSVLKAAS 427



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 47/296 (15%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V  ++ T   +LK C   G +   +S HG   K     D  V   LV++Y    G ++ G
Sbjct: 141 VYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF-GKVKEG 199

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +F+EM  RD V W+ M+  Y  +G   +AIDL      SG+ P+EIT+          
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL---------- 249

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                          +++ R               GD   A ++    NG    S + +I
Sbjct: 250 ---------------RLLARI-------------SGDDSDAGQVKSFANGNDASSVSEII 281

Query: 186 ---AGLAMHGRGLEAVAL---FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
               GL+ +    +  AL   F +M+E+ V  D V F+ +L+       +  G++    M
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQ-VHCM 340

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               G+   +     +++M C+  +   A      M  E + I W ++I+     G
Sbjct: 341 ALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS-ERDLISWNSVIAGIAQNG 395



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-----EAVALFEE 203
           L N LI M++KCG +  A ++F  M  R +VSW S++A  A     +     +A  LF  
Sbjct: 76  LINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRI 135

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           + +  V    +    +L  C H G V    E F       G+       G +V++  + G
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
           +VKE     ++MP   + ++W  ++ A
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/498 (38%), Positives = 313/498 (62%), Gaps = 31/498 (6%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC---------- 58
           N +T+P +LKAC+ +  L     +H  + K  + +D++  N+L++ Y +           
Sbjct: 143 NAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLF 202

Query: 59  --------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98
                                G +++   +F +M E++++SW+ MI GY + G+  +A+ 
Sbjct: 203 DRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQ 262

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           LF +MQ S V PD +++   LSAC  LGALE GKW+ S++ K  +     L   LIDM+A
Sbjct: 263 LFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYA 322

Query: 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           KCGD+ +AL++F+++  +++ +WT++I+G A HG G EA++ F EM + G+ P+ + F  
Sbjct: 323 KCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTT 382

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           +L+ACS+ GLV++G+  F +M+ D+ + P IEHYGC+VD+L R+G + EA  FIQ+MP++
Sbjct: 383 VLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLK 442

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338
            N +IW  L+ AC     ++L E I + LI  +P H   YV  ++I+A   +W+K  + R
Sbjct: 443 PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETR 502

Query: 339 EVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP-TT 397
            +M ++G+ K+PG + I L+   +EF+ GD+SH + ++I      M RK+++ GYVP   
Sbjct: 503 RLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELE 562

Query: 398 SEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKI 457
             +L  ++++++E  +++HSEKLAI + L+KT PGT IRI+KNLRVC DCH  TK ISKI
Sbjct: 563 DMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKI 622

Query: 458 YNREIVVRDRHRFHHFKD 475
           Y R+IV+RDR RFHHF+D
Sbjct: 623 YKRDIVMRDRTRFHHFRD 640



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V P+  +    L ACA +G L  GK +H  + K +   D  +   L+ MY  C G
Sbjct: 267 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKC-G 325

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF  +  +   +W+A+I GYA  G   +AI  F +MQ  G+ P+ IT  TVL+
Sbjct: 326 DMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLT 385

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC+  G +E GK +   +E+   +  ++     ++D+ ++ G +D+A +  + M  +   
Sbjct: 386 ACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNA 445

Query: 179 VSWTSVIAGLAMH 191
           V W +++    +H
Sbjct: 446 VIWGALLKACRIH 458



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 132/313 (42%), Gaps = 45/313 (14%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVH--MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           K +H  +LK     D +     +   +  +    +   + VFD     D+  W+ MI G+
Sbjct: 60  KQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 119

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           +       ++ L+++M       +  T  ++L AC++L ALE    + + I K      V
Sbjct: 120 SCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDV 179

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR-------------- 193
              N+LI+ +A  G+   A  LF  +     VSW SVI G A  G+              
Sbjct: 180 YAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEK 239

Query: 194 ---------------GL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
                          G+  EA+ LF EM  + V PD+V+    LSAC+  G +++G+   
Sbjct: 240 NAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIH 299

Query: 237 DSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLISACC 292
             +      +  +   GC ++DM  + G + EA E    IQ+  ++A    W  LIS   
Sbjct: 300 SYLTKTRIRMDSV--LGCVLIDMYAKCGDMGEALEVFKNIQRKSVQA----WTALISGYA 353

Query: 293 ARGELKLAESITK 305
             G  +  E+I+K
Sbjct: 354 YHGHGR--EAISK 364


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 299/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV     +    L AC  +G L+ G+ VH  +++     +++V N L+ MY  C+ 
Sbjct: 419 MVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKR 478

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +L  +VFDE+  +  VSW+AMI G  + G S DA+ LF +MQ+  V PD  T+V+++ 
Sbjct: 479 -TDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIP 537

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D+      +W+  +  +  +++ V +  ALIDM+AKCG V  A  LF S   R +++
Sbjct: 538 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVIT 597

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  AV LFEEM  +G  P++  F+ +LSACSH GLVD+G+EYF SMK
Sbjct: 598 WNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMK 657

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P +EHYG MVD+L R+G++ EA  FIQKMP+E    ++  ++ AC     ++LA
Sbjct: 658 EDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELA 717

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +R+   EP     +VLL++IYA    W+   ++R  M+K+G++K PG ++++L NE
Sbjct: 718 EESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNE 777

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G  +H Q+K+IY  L ++  ++K  GYVP T  +  D+ ++ K   LN HSEKL
Sbjct: 778 IHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKL 836

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L++T PGT I+I KNLRVC DCH+ATK IS +  REI++RD  RFHHFKD
Sbjct: 837 AIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKD 891



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 177/360 (49%), Gaps = 16/360 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P   T+  +LK CA   DL  G++VH  +       +      L +MY  C    + 
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD- 278

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACT 123
            R+VFD M  RD V+W+A++ GYAR GL+  A+ +  +MQ   G  PD +T+V+VL AC 
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           D  AL   + V +F  +   +  V +  A++D++ KCG VD A K+F  M  R  VSW +
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I G A +G   EA+ALF+ M+  GV   DV+ +  L AC   G +D+GR   + +    
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR-I 457

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+   +     ++ M C+  R   A +   ++  +   + W  +I  C   G  + A  +
Sbjct: 458 GLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGSSEDAVRL 516

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL-IELDNEIY 362
             R+   E +   ++ L+S I A          + ++ D    + I G ++ + LD ++Y
Sbjct: 517 FSRM-QLENVKPDSFTLVSIIPA----------LADISDPLQARWIHGYSIRLHLDQDVY 565



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 3/298 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  P+  T   VL ACA    L   + VH   ++  F + ++V   ++ +Y  C G +
Sbjct: 320 EDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC-GAV 378

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +  RKVFD M +R+SVSW+AMI GYA  G +T+A+ LF++M   GV   +++++  L AC
Sbjct: 379 DSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHAC 438

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +LG L+ G+ V   + +  +  +V + NALI M+ KC   D A ++F  +  +T VSW 
Sbjct: 439 GELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWN 498

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G   +G   +AV LF  M    V PD    V ++ A +      + R +       
Sbjct: 499 AMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR-WIHGYSIR 557

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +   +     ++DM  + GRV  A         + + I W  +I    + G  K+A
Sbjct: 558 LHLDQDVYVLTALIDMYAKCGRVSIARSLFNSAR-DRHVITWNAMIHGYGSHGSGKVA 614



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 96  AIDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           A+  F  M   SG  P   T  ++L  C     L  G+ V + +  + ++       AL 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDD 213
           +M+AKC     A ++F  M  R  V+W +++AG A +G    AV +   M E  G  PD 
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V  V +L AC+    +   RE   +     G   ++     ++D+ C+ G V  A +   
Sbjct: 328 VTLVSVLPACADAQALGACRE-VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD 386

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA--KLLRW 331
            M  + N + W  +I      G+   A ++ KR++G E +  ++  +L+ ++A  +L   
Sbjct: 387 GMQ-DRNSVSWNAMIKGYAENGDATEALALFKRMVG-EGVDVTDVSVLAALHACGELGFL 444

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           ++  ++ E++ + G++     + + + N +    C  K    + +++   DE+G K +
Sbjct: 445 DEGRRVHELLVRIGLE-----SNVNVMNALITMYCKCKRTDLAAQVF---DELGYKTR 494


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/480 (43%), Positives = 308/480 (64%), Gaps = 18/480 (3%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           MLE G V  +K T+PFVLKACA +  L+ G+ +H  +LK  F  D+++ N+LVH Y +C+
Sbjct: 118 MLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCD 177

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++  + VFD MSER  VSW+ +I  + R G    A++LF +MQ     PD  T+ ++ 
Sbjct: 178 R-LDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIA 235

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +AC  +G+L +G          +VN  V L  +L+DM+ KCG ++ AL+LF  M  R + 
Sbjct: 236 NACAGMGSLSLG----------IVN-DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVT 284

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           SW S+I G + HG    A+  F  M+    + P+ + FVG+LSAC+H GLV +GR YFD 
Sbjct: 285 SWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDV 344

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-L 297
           M  ++ I P++EHYGC+VD+L R+G + EA + +  MP+  + +IWR+L+ ACC +   +
Sbjct: 345 MVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGV 404

Query: 298 KLAESITKRLIGNEP-MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           +L+E + +R++  E  +    YVLLS +YA   RW     +R++M  +G+ K PG + IE
Sbjct: 405 ELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIE 464

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDINEEDKEDALNK 415
           +D   +EF  GD SH Q++EIY  LD +  ++++ GY P +S+  ++D   + K+ +L  
Sbjct: 465 IDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRL 524

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSE+LAIAF LLKT PG PIRI KNLRVCN+CH  TK IS+++NREI+VRDR RFHHFKD
Sbjct: 525 HSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKD 584



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 22/239 (9%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTD----AIDLFRQMQISG-VCPDEITMVTVLSA 121
           +VF ++   +S  W+A+I   AR   STD    AI L+ +M   G V  D+ T   VL A
Sbjct: 81  RVFHQIENPNSFMWNALIRACAR---STDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKA 137

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  L AL  G+ + + I K   +  V + N+L+  +A C  +D A  +F  M+ R++VSW
Sbjct: 138 CAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSW 197

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
             VI      G    A+ LF EM +    PD      + +AC+  G +            
Sbjct: 198 NVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMGSL------------ 244

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             GI+  +     +VDM C+ G ++ A +   +MP + +   W ++I      GE+  A
Sbjct: 245 SLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVAAA 302


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 301/470 (64%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   A   D++ GK +HG  ++     DI+V ++L+ MY  C    +  
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VF  ++ERD +SW+++I G  + GL  + +  FRQM ++ + P   +  +++ AC  L
Sbjct: 295 R-VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  +I +   + ++ + ++L+DM+AKCG++  A ++F  M  R +VSWT++I
Sbjct: 354 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG+  +A+ LFE+M   G+ P+ VAF+ +L+ACSH GLVD+  +YF+SM  DFGI
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGI 473

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P +EHY  + D+L R+GR++EA++FI  M I     IW TL+SAC     + +AE +  
Sbjct: 474 APGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVAN 533

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  +P +   Y+LL++IY+   RW++  K R  M + G++K P  + IE+ N++Y F+
Sbjct: 534 RILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFM 593

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH   ++I E ++ +   M+K GYVP TSEV  D+ EE K+  +  HSE+LAI F 
Sbjct: 594 AGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFG 653

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++ TP G  IR+ KNLRVC DCH+ATKFISKI  REIVVRD  RFHHFK+
Sbjct: 654 IINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKN 703



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 160/327 (48%), Gaps = 33/327 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+   +P VLK+CA + DLNLG+S+HG +++     D++  N L++MY     
Sbjct: 97  MLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 156

Query: 61  GIELGRK------VFDEMSER-------------------------DSVSWSAMIGGYAR 89
             E GR+      VFDEM+ER                         D VSW+ +I G AR
Sbjct: 157 LEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            GL  + + + R+M  + + PD  T+ +VL    +   +  GK +     +Q ++  + +
Sbjct: 217 NGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            ++LIDM+AKC  V  + ++F  +  R  +SW S+IAG   +G   E +  F +ML A +
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P   +F  ++ AC+H   +  G++    +  + G    I     +VDM  + G ++ A 
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
           +   +M +  + + W  +I  C   G+
Sbjct: 396 QIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 36/262 (13%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F+ +    +++W ++I  Y   GL   ++  F  M  SG+ PD     +VL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-------------CGDV---------- 163
            L +G+ +  +I +  ++  +   NAL++M++K              G+V          
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 164 ---------DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
                    D   K+F  M  + +VSW ++IAG A +G   E + +  EM  A + PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 215 AFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
               +L   +    + +G+E    S++   G+   I     ++DM  +  RV ++   + 
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCR-VF 297

Query: 274 KMPIEANPIIWRTLISACCARG 295
            +  E + I W ++I+ C   G
Sbjct: 298 TLLTERDGISWNSIIAGCVQNG 319


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV P+ +    VL AC  +GDL+ G+ +   + + +   +  V+ TLV++Y  C G
Sbjct: 203 MVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKC-G 261

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M E+D V+WS MI GYA      + I+ F QM    + PD+ ++V  LS
Sbjct: 262 KMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS 321

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGAL++G+W  S I++     ++ + NALIDM+AKCG + +  ++F+ M  + IV 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
             + I+GLA +G    + A+F +  + G+ PD   F+GLL  C H GL+  G  +F+++ 
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + +   +EHYGCMVD+  R+G + +A+  I  MP+  N I+W  L+S C    + +LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E++ K LI  EP +  NYV LS+IY+   RW++  ++R++M+++GMKKIPG + IEL+  
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGT 561

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF+  DKSH  S +IY  L+++G +M+  G+VPTT  V  D+ +E+KE  L  HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKL 621

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T  G  IR+VKNLRVC DCH   K ISKI  REIVVRD +RFH F +
Sbjct: 622 AVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTN 676



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 168/301 (55%), Gaps = 3/301 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           ++G++ + FT+P VLKAC    +  LG  +H  V+K  F  D+    +L+ +Y S  G +
Sbjct: 104 KHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIY-SGSGRL 162

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               KVF+E+ ER  V+W+A+  GY   G   +AIDLF++M   GV PD   +V VLSAC
Sbjct: 163 NDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSAC 222

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +G L+ G+W+   +E+  + ++  +   L++++AKCG ++KA  +F SM  + IV+W+
Sbjct: 223 VHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWS 282

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A +    E +  F +ML+  + PD  + VG LS+C+  G +D G E+  S+ + 
Sbjct: 283 TMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDR 341

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
              +  +     ++DM  + G +    E  ++M  E + +I    IS     G +KL+ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFA 400

Query: 303 I 303
           +
Sbjct: 401 V 401



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 14/217 (6%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++ +I G+    L  + +DLF  ++  G+     T   VL ACT     ++G  + S + 
Sbjct: 79  YNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVV 138

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K   N  V    +L+ +++  G ++ A K+F  +  R++V+WT++ +G    G+  EA+ 
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAID 198

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR------EYFDSMKNDFGIIPKIEHYG 253
           LF++M+E GV PD    V +LSAC H G +D G       E  +  KN F          
Sbjct: 199 LFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFV-------RT 251

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +V++  + G++++A      M  E + + W T+I  
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMIQG 287


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/479 (43%), Positives = 311/479 (64%), Gaps = 5/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P+ +    +LKAC     L  G+ VH   LK  F  +  V+  ++ +YG C G
Sbjct: 128 MLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKC-G 186

Query: 61  GIELGRKVFDEMSE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            +   R+VF+EM E    +D+V W+AMI G+ R   +  A++ FR MQ   V P+E T+V
Sbjct: 187 ELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 246

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VLSAC+ LGALE+G+WV S++ K  +  ++ + NALI+M+++CG +D+A  +F  M  R
Sbjct: 247 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 306

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            ++++ ++I+GL+M+G+  +A+ LF  M+   + P +V FVG+L+ACSH GLVD G E F
Sbjct: 307 DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIF 366

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            SM  D+ + P+IEHYGCMVD+L R GR++EA++ I+ M +  + I+  TL+SAC     
Sbjct: 367 HSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 426

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           L+L E + K L          YVLLSH+YA   +W++  ++R  M + GM+K PG + IE
Sbjct: 427 LELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 486

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++NEI+EF+ GD  H Q + IYE L+E+ R ++  GY P    VL DI + +KE AL  H
Sbjct: 487 VNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMH 546

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAI + L+ T P T IR++KNLRVC DCHSA K I+KI  R+IVVRDR+RFH+F++
Sbjct: 547 SERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFEN 605



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 11/284 (3%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  +++     D  +   L+     C   I+   ++F      +   ++A+I G+   G
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHA-IDYASRIFQYTHNPNVYLYTALIDGFVSSG 116

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ--MVNRSVGL 149
              +AI L+ +M    + PD   M ++L AC    AL  G+ V S   K     NR V L
Sbjct: 117 NYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRL 176

Query: 150 CNALIDMFAKCGDVDKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
              +++++ KCG++  A ++F  M      +  V WT++I G   +     A+  F  M 
Sbjct: 177 --RIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQ 234

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
              V P++   V +LSACS  G ++ GR +  S    F I   +     +++M  R G +
Sbjct: 235 GENVRPNEFTIVCVLSACSQLGALEIGR-WVHSYMRKFEIELNLFVGNALINMYSRCGSI 293

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
            EA     +M  + + I + T+IS     G+ + A  + + ++G
Sbjct: 294 DEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMVG 336


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/489 (42%), Positives = 299/489 (61%), Gaps = 16/489 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF--------GDDIHVQNTLV 52
           M + G  PN  T   +L AC  +G L  GK  H   +KF           DD+ V N L+
Sbjct: 491 MCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLI 550

Query: 53  HMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGV 108
            MY  C+   E+ RK+FD +S  +RD V+W+ MIGGYA+ G + +A+ LF  M      +
Sbjct: 551 DMYAKCQS-TEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSI 609

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKA 166
            P++ T+   L AC  L AL  G+ V +++ +     SV L   N LIDM++K GDVD A
Sbjct: 610 KPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG-SVMLFVANCLIDMYSKSGDVDTA 668

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
             +F +M  R  VSWTS++ G  MHGRG +A+ +F+EM +  + PD + F+ +L ACSH 
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           G+VD G  +F+ M  DFG+ P  EHY CMVD+  R+GR+ EA + I +MP+E  P++W  
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L+SAC     ++L E    RL+  E  ++ +Y LLS+IYA   RW+   +IR  M + G+
Sbjct: 789 LLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGI 848

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
           KK PG + I+    +  F  GD+SH QS++IYE L ++ +++K  GYVP TS  L D+++
Sbjct: 849 KKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDD 908

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           E+K D L +HSEKLA+A+ +L   P  PIRI KNLR+C DCHSA  +ISKI   EI++RD
Sbjct: 909 EEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRD 968

Query: 467 RHRFHHFKD 475
             RFHHFK+
Sbjct: 969 SSRFHHFKN 977



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 156/331 (47%), Gaps = 49/331 (14%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +SP+  +   +L ACA +     G+ VHG  ++    DD+ V N +V MY  C G +E  
Sbjct: 360 MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC-GKMEEA 418

Query: 66  RKVFDEMSERDSVSWSAM-----------------------------------IGGYARL 90
            KVF  M  +D VSW+AM                                   I GYA+ 
Sbjct: 419 NKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQR 478

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN------ 144
           G   +A+D+FRQM   G  P+ +T+V++LSAC  +GAL  GK    +  K ++N      
Sbjct: 479 GQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDP 538

Query: 145 --RSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVAL 200
               + + N LIDM+AKC   + A K+F S++   R +V+WT +I G A HG    A+ L
Sbjct: 539 GADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQL 598

Query: 201 FEEM--LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
           F  M  ++  + P+D      L AC+    +  GR+    +  +F     +    C++DM
Sbjct: 599 FSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDM 658

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             +SG V  A      MP + N + W +L++
Sbjct: 659 YSKSGDVDTAQIVFDNMP-QRNAVSWTSLMT 688



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 40/273 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G +P+ +T+PFV KACA +  L+LG S+H  V +  F  ++ V N +V MYG C G
Sbjct: 250 MKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKC-G 308

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPDEITMV 116
            +     +FD++  R   D VSW++++  Y     +  A+ LF +M    +  PD I++V
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLV 368

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +L AC  L A   G+ V  F  +  +   V + NA++DM+AKCG +++A K+F+ M  +
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK 428

Query: 177 TIVS-----------------------------------WTSVIAGLAMHGRGLEAVALF 201
            +VS                                   WT+VI G A  G+G EA+ +F
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            +M + G  P+ V  V LLSAC   G +  G+E
Sbjct: 489 RQMCDCGSRPNVVTLVSLLSACVSVGALLHGKE 521



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ +I     LG   D   L+RQM+  G  PD  T   V  AC +L +L +G  + + + 
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI---VSWTSVIAGLAMHGRGLE 196
           +     +V +CNA++ M+ KCG +  A  +F  +  R I   VSW SV++          
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 197 AVALFEEMLEAGV-PPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGC 254
           A+ALF +M    +  PD ++ V +L AC+      +GR+    S+++  G++  +     
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS--GLVDDVFVGNA 404

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +VDM  + G+++EA++  Q+M  + + + W  +++     G L+ A S+ +R+
Sbjct: 405 VVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLEHALSLFERM 456


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 300/477 (62%), Gaps = 4/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIG--DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML  G+ PN+FT   +LKA +G+G  D+  G+ +HG  L++ +  +++V   ++ MY  C
Sbjct: 107 MLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARC 166

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
              +E  + +FD M  ++ VSW+A+I GYAR G    A  LF  M    V P   T  +V
Sbjct: 167 HH-LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSV 225

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC  +G+LE GKWV + + K        + N L+DM+AK G ++ A K+F  +  R +
Sbjct: 226 LCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDV 285

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S++ G + HG G  A+  FEEML   + P+D+ F+ +L+ACSH GL+D+GR YFD 
Sbjct: 286 VSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDM 345

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  + + P+I HY  MVD+L R+G +  A +FI +MPI+    +W  L+ AC     ++
Sbjct: 346 MKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNME 404

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L     + +   +  +   +VLL +IYA   RW    K+R++M + G+KK P  + +E++
Sbjct: 405 LGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEME 464

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           NE++ FV  D +H Q +EI+ M +++  K+K+ GYVP +S VLL ++++++E  L  HSE
Sbjct: 465 NEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSE 524

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AFALL TPPG+ IRI KN+R+C DCHSA KF+SK+  REI+VRD +RFHHF D
Sbjct: 525 KLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCD 581



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 165/289 (57%), Gaps = 9/289 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK C  +  LN GK +H  +L  +F DD+ +QNTL+++Y  C G +   RK+FDEMS R
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKC-GDLVYARKLFDEMSSR 79

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV--GKW 133
           D V+W+A+I GY++     DA+ L  +M   G+ P++ T+ ++L A + +G+ +V  G+ 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +     +   + +V +  A++DM+A+C  +++A  +F  M  +  VSW ++IAG A  G+
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY- 252
           G +A  LF  ML   V P    +  +L AC+  G +++G+ +  ++   +G   K+  + 
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGK-WVHALMIKWG--EKLVAFV 256

Query: 253 -GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              ++DM  +SG +++A +   ++  + + + W ++++     G  K+A
Sbjct: 257 GNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHGLGKVA 304



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 10/267 (3%)

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           ++L RQ   +     EI   T+L  CT L  L  GK + + +        + + N L+++
Sbjct: 1   MELIRQQCKNNAGAREICH-TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNL 59

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           +AKCGD+  A KLF  M+ R +V+WT++I G + H R  +A+ L  EML  G+ P+    
Sbjct: 60  YAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTL 119

Query: 217 VGLLSACSHCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
             LL A S  G  D  +GR+    +   +G    +     ++DM  R   ++EA + I  
Sbjct: 120 ASLLKAASGVGSTDVLQGRQ-LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA-QLIFD 177

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EPMHESNYVLLSHIYAKLLRWE 332
           + +  N + W  LI+    +G+   A  +   ++    +P H +   +L    A +   E
Sbjct: 178 VMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCAC-ASMGSLE 236

Query: 333 KKTKIREVMDKRGMKKIP--GSTLIEL 357
           +   +  +M K G K +   G+TL+++
Sbjct: 237 QGKWVHALMIKWGEKLVAFVGNTLLDM 263


>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 397

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/245 (79%), Positives = 216/245 (88%), Gaps = 1/245 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLEY V PNKFTYPFVLKACAGIG LNLGKSVHG+VLKF F +D+HVQNT+VHMY     
Sbjct: 127 MLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMVHMYCCGRD 186

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVL 119
           GIE  R+VFDEM +RD VSWSAMIGGYARLG  +DAIDLFR+MQI GVC PDEITMV+VL
Sbjct: 187 GIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVL 246

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACTDLGALE+GKWVES+IEK+ V +SV LCNALIDMFAKCGDVDKA+KLFR+M  RTIV
Sbjct: 247 SACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIV 306

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTSVIAGLAMHGRGLEAV  FEEM+++GV PDDVAF+GLLSACSH GLVDKGREYFD M
Sbjct: 307 SWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLLSACSHSGLVDKGREYFDLM 366

Query: 240 KNDFG 244
           + +FG
Sbjct: 367 RENFG 371



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 6/203 (2%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ +++ M    V P++ T   VL AC  +G L +GK V   + K   +  V + N ++ 
Sbjct: 120 ALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMVH 179

Query: 156 MFAKCG--DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD 212
           M+  CG   ++ A ++F  M  R  VSW+++I G A  GR  +A+ LF EM   GV  PD
Sbjct: 180 MYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPD 238

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           ++  V +LSAC+  G ++ G+ + +S      +   +E    ++DM  + G V +A +  
Sbjct: 239 EITMVSVLSACTDLGALELGK-WVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLF 297

Query: 273 QKMPIEANPIIWRTLISACCARG 295
           + M  +   + W ++I+     G
Sbjct: 298 RNMK-DRTIVSWTSVIAGLAMHG 319


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 307/477 (64%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P++FTYPFV+KA + +GD + G ++H  V+K+ FG    V   LV MY    G
Sbjct: 100 MRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKF-G 158

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F+ M  +D V+W+A +    + G S  A++ F +M    V  D  T+V++LS
Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG+LE+G+ +     K+ ++ ++ + NA +DM  KCG+ + A  LF  M  R +VS
Sbjct: 219 ACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVS 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           W+++I G AM+G   EA+ LF  M   G+ P+ V F+G+LSACSH GLV++G+ YF  M 
Sbjct: 279 WSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             ND  + P+ EHY CMVD+L RSG ++EA+EFI+KMP+E +  IW  L+ AC    ++ 
Sbjct: 339 QSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI 398

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L + +   L+   P   S +VLLS+IYA   +W+   K+R  M K G KK+   + +E +
Sbjct: 399 LGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFE 458

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +I+ F  GDKSH QSK IYE LDE+ +K++K GYVP T  V  D+  E+KE +L+ HSE
Sbjct: 459 GKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSE 518

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+K  PG PIR++KNLR C+DCH+ +KF+S + + EI++RD++RFHHF++
Sbjct: 519 KLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 11/293 (3%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H  VL+  F +   +   L+       G +   R+VFDEM +     W+ +  GY R
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVI-GDMCYARQVFDEMHKPRIFLWNTLFKGYVR 86

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
             L  +++ L+++M+  GV PDE T   V+ A + LG    G  + + + K        +
Sbjct: 87  NQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIV 146

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              L+ M+ K G++  A  LF SM  + +V+W + +A     G    A+  F +M    V
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV 206

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKN---DFGIIPKIEHYGCMVDMLCRSGRVK 266
             D    V +LSAC   G ++ G E +D  +    D  II +       +DM  + G  +
Sbjct: 207 QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVE----NARLDMHLKCGNTE 262

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            A    ++M  + N + W T+I      G+ + A ++   +  NE +   NYV
Sbjct: 263 AARVLFEEMK-QRNVVSWSTMIVGYAMNGDSREALTLFTTM-QNEGL-RPNYV 312


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/490 (42%), Positives = 310/490 (63%), Gaps = 22/490 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGI 62
            + PN FT+P + KAC       + G  +H  VLKF Q   D  VQ +L++ Y    G +
Sbjct: 245 NLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAK-YGKM 303

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARL-------------GLSTDAIDLFRQMQISGVC 109
            + R +FD ++E D  +W+ ++  YAR                S +++ LFR MQ+ G+ 
Sbjct: 304 CVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIR 363

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMV--NRSVGLCNALIDMFAKCGDVDKAL 167
           P+E+T+V ++SAC++LGA+  G WV  F+ +  +  NR VG   A +DM++KCG ++ A 
Sbjct: 364 PNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVG--TAFVDMYSKCGCLNLAC 421

Query: 168 KLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           ++F  M  N R    +T++I G A+HG G +A+ L+ +M   G+ PD   FV  + ACSH
Sbjct: 422 QVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSH 481

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            GLV++G E F SMK   G+ PK+EHYGC++D+L R+GR+KEA E++  MP++ N ++WR
Sbjct: 482 VGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWR 541

Query: 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345
           +L+ A    G L + E    +LI  EP    NYVLLS++YA + R     ++R++M   G
Sbjct: 542 SLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHG 601

Query: 346 MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
           + K+PG +L+E+   ++EF+ GD+SH  SKEIY  + E+  ++++ G+   TSE L D+ 
Sbjct: 602 VNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLE 661

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           EEDKE  L+ HSE+LAIAFAL+ +P    IRI+KNLRVC DCH+ TK IS  Y+REI+VR
Sbjct: 662 EEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVR 721

Query: 466 DRHRFHHFKD 475
           DR+RFHHFKD
Sbjct: 722 DRNRFHHFKD 731


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 297/468 (63%), Gaps = 1/468 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT   VL   A   +L  GK +HG  ++  +  D+ + ++L+ MY  C   ++   +
Sbjct: 234 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTR-VDDSCR 292

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  + + D +SW+++I G  + G+  + +  F+QM I+ + P+ ++  +++ AC  L  
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +GK +  +I +   + +V + +AL+DM+AKCG++  A  +F  M    +VSWT++I G
Sbjct: 353 LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMG 412

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A+HG   +A++LF+ M   GV P+ VAF+ +L+ACSH GLVD+  +YF+SM  D+ IIP
Sbjct: 413 YALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIP 472

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +EHY  + D+L R GR++EA+EFI  M IE    +W TL++AC     ++LAE ++K+L
Sbjct: 473 GLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKL 532

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
              +P +   YVLLS+IY+   RW+   K+R  M  +GMKK P  + IE+ N+++ FV G
Sbjct: 533 FTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAG 592

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           DKSH     I E L  +  +M++ GYV  T+EVL D+ EE K   L  HSE+LAI F ++
Sbjct: 593 DKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGII 652

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            TP GT IR+ KNLRVC DCH+ATKFISKI  REIVVRD  RFHHFKD
Sbjct: 653 STPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKD 700



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 36/338 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML  G  P+   +P VLK+C  + DL  G+SVHG +++   G D++  N L++MY     
Sbjct: 97  MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 156

Query: 59  ------------EGGIE------------LG--RKVFDEMSERDSVSWSAMIGGYARLGL 92
                       EG               LG  RKVF+ M +RD VSW+ +I G A+ G+
Sbjct: 157 LEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             DA+ + R+M  + + PD  T+ +VL    +   L  GK +  +  +   +  V + ++
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 276

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LIDM+AKC  VD + ++F  +     +SW S+IAG   +G   E +  F++ML A + P+
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPN 336

Query: 213 DVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            V+F  ++ AC+H   +  G++   Y    + D  +         +VDM  + G ++ A 
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA----SALVDMYAKCGNIRTAR 392

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
               KM +  + + W  +I      G    A S+ KR+
Sbjct: 393 WIFDKMEL-YDMVSWTAMIMGYALHGHAYDAISLFKRM 429



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 34/259 (13%)

Query: 68  VFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +F+ + S   +++W ++I  Y   GL   ++  F QM  SG  PD     +VL +CT + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA-------------------- 166
            L  G+ V   I +  +   +  CNAL++M++K   +++                     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 167 ---------LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                     K+F  M  R IVSW +VI+G A +G   +A+ +  EM  A + PD     
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 218 GLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            +L   +    + KG+E    +++N +     I     ++DM  +  RV ++      +P
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP 298

Query: 277 IEANPIIWRTLISACCARG 295
            + + I W ++I+ C   G
Sbjct: 299 -QHDGISWNSIIAGCVQNG 316



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
           S  L + ++ +++    +  +L +F S+ +  T ++W S+I     HG  L +++ F +M
Sbjct: 38  SPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQM 97

Query: 205 LEAGVPPDDVAFVGLLSACS 224
           L +G  PD   F  +L +C+
Sbjct: 98  LASGKYPDHNVFPSVLKSCT 117


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/474 (41%), Positives = 307/474 (64%), Gaps = 2/474 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G S +      VL AC+ + +  + + VHG  +K      + V+NTL+  Y  C G +
Sbjct: 185 EVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKC-GEV 243

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSA 121
            L RKVFD+M+E+D VSW++MI  YA+ GLSTDA ++F  M +  G   +E+T+ T+L A
Sbjct: 244 SLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLA 303

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C   GAL VG  +   + K     +V +  ++IDM+ KCG  + A   F  M  + + SW
Sbjct: 304 CAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSW 363

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T++IAG  MHG   EA+ +F +M+ AGV P+ + F+ +L+ACSH G +++G  +F++M +
Sbjct: 364 TAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSH 423

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           ++ + P +EHYGCMVD+L R+G +KEA+  I+ M +  + ++W +L++AC    +++LAE
Sbjct: 424 EYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAE 483

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
              + L   +P +   YVLL++IYA   RW+   ++R ++  RG+ K PG +L+EL   +
Sbjct: 484 ISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRV 543

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F+ GDK H Q ++IY+ L+E+  K+++AGYVP  + VL D++EE+KE  +  HSEKLA
Sbjct: 544 HVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLA 603

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AF ++ + PG+ I ++KNLRVC DCH+  K ISKI +REI+VRD  RFHHFKD
Sbjct: 604 VAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKD 657



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 170/338 (50%), Gaps = 19/338 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+P  +K+C+ + DLN GK  H   L F F  D+ V + L+ MY  C G
Sbjct: 73  MRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKC-G 131

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---------GVCPD 111
            +   R +FDE+  R+ V+W+++I GY +   + +A+ +F++             G   D
Sbjct: 132 KLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVD 191

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
            + M++VLSAC+ +    V + V     K  +++ +G+ N L+D +AKCG+V  + K+F 
Sbjct: 192 SVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFD 251

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVD 230
            M  + +VSW S+IA  A +G   +A  +F  ML+AG    ++V    LL AC+H G + 
Sbjct: 252 DMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALR 311

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G    D +    G +  +     ++DM C+ G+ + A      M  E N   W  +I+ 
Sbjct: 312 VGMCLHDQVIK-MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMK-EKNVRSWTAMIAG 369

Query: 291 CCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
               G  + A  +  ++I  G +P    NY+    + A
Sbjct: 370 YGMHGFAREALDVFYQMIWAGVKP----NYITFISVLA 403


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/475 (42%), Positives = 294/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  +++T+  +L AC  +  L  GK +H  + +  + D++ V + LV MY  C  
Sbjct: 269 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRS 328

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L   VF  M+ R+ +SW+AMI GY +   S +A+  F +MQ+ G+ PD+ T+ +V+S
Sbjct: 329 -IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +L +LE G           + R + + NAL+ ++ KCG ++ A +LF  M+    VS
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT+++ G A  G+  E + LFE+ML  G+ PD V F+G+LSACS  GLV+KG +YFDSM+
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+P  +HY CM+D+  RSGR KEA EFI++MP   +   W TL+S+C  RG +++ 
Sbjct: 508 KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIG 567

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   + L+  +P + ++YVLL  ++A   +W +   +R  M  R +KK PG + I+  N+
Sbjct: 568 KWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNK 627

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   D+SH  S  IYE L+ +  KM + GY P  S VL D+ + DK   ++ HSEKL
Sbjct: 628 VHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKL 687

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P   PIRIVKNLRVC DCH+ATKFISKI  R+I+VRD  RFH F D
Sbjct: 688 AIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSD 742



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 166/339 (48%), Gaps = 34/339 (10%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  V P + T   ++   + + D  LG SVH  VL+  FG    V + LV MY    G I
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKM-GLI 197

Query: 63  ELGRKVFDEMS-------------------------------ERDSVSWSAMIGGYARLG 91
              R+VF EM                                +RDS++W+ M+ G  + G
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L  +A+D+FR+M+  GV  D+ T  ++L+AC  L ALE GK + ++I +     +V + +
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           AL+DM++KC  +  A  +FR M  R I+SWT++I G   +    EAV  F EM   G+ P
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP 377

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           DD     ++S+C++   +++G + F  +    G++  I     +V +  + G +++AH  
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
             +M    + + W  L++     G+ K    + ++++ N
Sbjct: 437 FDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKMLAN 474



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 38/256 (14%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEIT---MVTVLSAC 122
           ++F  M ERD+VS++A+I G++  G    ++ L+R + +   V P  IT   M+ V SA 
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 123 TD--LG------ALEVGKWVESFIEKQMVN--------------------RSVGLCNALI 154
           +D  LG       L +G    +F+   +V+                    ++V + N LI
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
               +C  ++ A  LF+ M  R  ++WT+++ GL  +G  LEA+ +F  M   GV  D  
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML--CRSGRVKEAHEFI 272
            F  +L+AC     +++G++    +   +     +     +VDM   CRS R+ EA    
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEA--VF 336

Query: 273 QKMPIEANPIIWRTLI 288
           ++M    N I W  +I
Sbjct: 337 RRMTCR-NIISWTAMI 351



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGV 209
           NAL+   A    V    +LF SM  R  VS+ ++I G +  G    +V L+  +L E  V
Sbjct: 83  NALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESV 142

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            P  +    ++   S   L D+      +   ++  FG    +     +VDM  + G ++
Sbjct: 143 RPTRITLSAMIMVAS--ALSDRALGHSVHCQVLRLGFGAYAFVG--SPLVDMYAKMGLIR 198

Query: 267 EAHEFIQKMPIEANPII-WRTLIS 289
           +A    Q+M  EA  ++ + TLI+
Sbjct: 199 DARRVFQEM--EAKTVVMYNTLIT 220


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 301/476 (63%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+ GV+PN FT+  VLKACA + D + G+ VHG  +K        V N LV +Y    G
Sbjct: 357 LLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAK-SG 415

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +E  RK FD + E++ VS + +     +   L+++  DL R+++  G      T  ++L
Sbjct: 416 RMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQ-DLDREVEYVGSGVSSFTYASLL 474

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S    +G +  G+ + + + K      + + NALI M++KCG+ + AL++F  M    ++
Sbjct: 475 SGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVI 534

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WTS+I G A HG   +A+ LF  MLE GV P+DV ++ +LSACSH GL+D+  ++F SM
Sbjct: 535 TWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSM 594

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +++ GI+P++EHY CMVD+L RSG + EA EFI  MP +A+ ++WRT + +C      KL
Sbjct: 595 RDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKL 654

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K ++  EP   + Y+LLS++YA   RWE    IR+ M ++ + K  GS+ IE++N
Sbjct: 655 GEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVEN 714

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++++F  GD  H ++++IYE LDE+  K+K  GYVP T  VL D+ +E KE  L +HSEK
Sbjct: 715 QVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEK 774

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AFAL+ TP   PIR+ KNLRVC DCH+A K+IS +  REIVVRD +RFHH KD
Sbjct: 775 LAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKD 830



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 154/278 (55%), Gaps = 10/278 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMY--GS 57
           +L+ GV PN++ +  V++AC   G    G  + G VLK  + D  + V   L+ M+  G 
Sbjct: 147 LLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGC 206

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMV 116
               +E  RKVFD+M E++ V+W+ MI   A+ G + +AIDLF +M +S G  PD  T+ 
Sbjct: 207 SLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLT 266

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            ++S C ++  L +GK + S++ +  +   + +  +L+DM+AKCG V +A K+F  M   
Sbjct: 267 GLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREH 326

Query: 177 TIVSWTSVIAGLAMHGRGL--EAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
            ++SWT+++ G    G G   EA+ +F  M L+ GV P+   F G+L AC+     D G 
Sbjct: 327 NVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGE 386

Query: 234 E-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           + +  ++K     I  + +   +V +  +SGR++ A +
Sbjct: 387 QVHGQTIKLGLSAIDCVGN--GLVSVYAKSGRMESARK 422



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 13/288 (4%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           T   +LK C    + +LGK +H  +       D  + N+L+ +Y      I     +F  
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPIT-AFSIFQS 112

Query: 72  M--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGAL 128
           M  S+RD VS+S++I  +A       A+++F Q+ +  GV P+E     V+ AC   G  
Sbjct: 113 MENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFF 172

Query: 129 EVGKWVESFIEKQ-MVNRSVGLCNALIDMFAK---CGDVDKALKLFRSMNGRTIVSWTSV 184
           + G  +  F+ K    +  V +   LIDMF K     D++ A K+F  M  + +V+WT +
Sbjct: 173 KTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM 232

Query: 185 IAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I  LA +G   EA+ LF EML  +G  PD     GL+S C+    +  G+E   S     
Sbjct: 233 ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKE-LHSWVIRS 291

Query: 244 GIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           G++  +   GC +VDM  + G V+EA +    M  E N + W  L++ 
Sbjct: 292 GLVLDL-CVGCSLVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 21/196 (10%)

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           IT   +L  C       +GK +   +    +     L N+LI +++K  D   A  +F+S
Sbjct: 53  ITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQS 112

Query: 173 MNG--RTIVSWTSVIAGLAMHGRGLEAVALFEE-MLEAGVPPDDVAFVGLLSACSHCGLV 229
           M    R +VS++S+I+  A +   L+AV +F++ +L+ GV P++  F  ++ AC   G  
Sbjct: 113 MENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGG-- 170

Query: 230 DKGREYFDSMKNDFGIIPKIEHY------GC-MVDML---CRSGRVKEAHEFIQKMPIEA 279
                +F +    FG + K  ++      GC ++DM    C    ++ A +   KM  E 
Sbjct: 171 -----FFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMR-EK 224

Query: 280 NPIIWRTLISACCARG 295
           N + W  +I+     G
Sbjct: 225 NVVTWTLMITRLAQYG 240


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/471 (43%), Positives = 295/471 (62%), Gaps = 2/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GVSP+ FT   VL ACA  G L  GK VH  + +     +I V N L+ MY  C G +E 
Sbjct: 94  GVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKC-GSMED 152

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF EM  +D +SW+ MIGGY++  L  +A+ LF  M +  + PD  T+  +L AC  
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACAS 211

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L+ GK V   I +        + NAL+DM+ KCG    A  LF  +  + +++WT +
Sbjct: 212 LASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVM 271

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG  MHG G  A+  F EM +AG+ PD+V+F+ +L ACSH GL+D+G  +F+ M+++  
Sbjct: 272 IAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECN 331

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + PK+EHY C+VD+L RSG++  A++FI+ MPIE +  IW  L+S C    ++KLAE + 
Sbjct: 332 VKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVA 391

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + +   EP +   YVLL++ YA+  +WE+  K+R+ + +RG+KK PG + IE+ ++++ F
Sbjct: 392 EHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIF 451

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + G+ SH Q+K+I  +L  +  KMK+ GY P T   L++ +   KE AL  HSEKLA+AF
Sbjct: 452 LAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAF 511

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            +L  PP   IR+ KNLRVC DCH   KFISK   REIV+RD +RFHHFKD
Sbjct: 512 GILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKD 562



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 154/275 (56%), Gaps = 4/275 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ACA  GD++LG++VHG+ +K          NTL+ MY  C G ++    VFD MS R
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKC-GVLDGAILVFDLMSVR 62

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
             V+W+++I  YAR GLS +AI LF +M   GV PD  T+ TVL AC   G+LE GK V 
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           ++I +  +  ++ +CNAL+DM+AKCG ++ A  +F  M  + I+SW ++I G + +    
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA++LF +M+   + PD      +L AC+    +D+G+E    +  + G     +    +
Sbjct: 183 EALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQVANAL 240

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           VDM  + G    A      +P + + I W  +I+ 
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAG 274



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 2/174 (1%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           MV++L AC + G + +G+ V     K  V+     CN L+DM+AKCG +D A+ +F  M+
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            RT+V+WTS+IA  A  G   EA+ LF EM   GV PD      +L AC+  G ++ G++
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             + ++ +  +   I     ++DM  + G +++A+    +MP++ + I W T+I
Sbjct: 121 VHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMI 172


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/495 (43%), Positives = 307/495 (62%), Gaps = 48/495 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M  + VSP+  T+PF+L +      L LG+  H  +L F    D  V+ +L++MY SC  
Sbjct: 53  MRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGD 112

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G I+  RK+FDEM ER+ +SWS +I GY   
Sbjct: 113 LRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMC 172

Query: 91  GLSTDAIDLFRQMQI-----SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G   +A+DLFR+MQ+     + V P+E TM TVLSAC  LGALE GKWV ++I+K  V  
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEI 232

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV-SWTSVIAGLAMHGRGLEAVALFEEM 204
            + L  ALIDM+AKCG +++A ++F ++  +  V +++++I  LAM+G   E   LF EM
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEM 292

Query: 205 LEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
             +  + P+ V FVG+L AC H GL+++G+ YF  M  +FGI P I+HYGCMVD+  RSG
Sbjct: 293 TTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSG 352

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            +KEA  FI  MP+E + +IW +L+S     G++K  E   KRLI  +PM+   YVLLS+
Sbjct: 353 LIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSN 412

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +YAK  RW +           G+ K+PG + +E++  ++EFV GD+S  +S+ IY MLDE
Sbjct: 413 VYAKTGRWME-----------GINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDE 461

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
           + +++++AGYV  T EVLLD+NE+DKE AL+ HSEKLAIAF L+KT PGTP+RI+KNLR+
Sbjct: 462 IMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRI 521

Query: 444 CNDCHSATKFISKIY 458
           C DCH     +++I+
Sbjct: 522 CGDCHLTGLALAEIF 536


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/472 (43%), Positives = 309/472 (65%), Gaps = 5/472 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+PF+LK C+      LGK +H  + K  F  D+++QN L+HMY    G + L R 
Sbjct: 93  PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEF-GDLLLARS 151

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FD M  RD VSW++MIGG     L  +AI+LF +M   GV  +E T+++VL AC D GA
Sbjct: 152 LFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGA 211

Query: 128 LEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           L +G+ V + +E+    ++    +  AL+DM+AK G +  A K+F  +  R +  WT++I
Sbjct: 212 LSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMI 271

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +GLA HG   +A+ +F +M  +GV PD+     +L+AC + GL+ +G   F  ++  +G+
Sbjct: 272 SGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGM 331

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P I+H+GC+VD+L R+GR+KEA +F+  MPIE + ++WRTLI AC   G+   AE + K
Sbjct: 332 KPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMK 391

Query: 306 RL-IGNEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            L I +    +S +Y+L S++YA   +W  K ++RE+M+K+G+ K PG++ IE+D  ++E
Sbjct: 392 HLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHE 451

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV GD +H +++EI+  L E+  K++K GY P  SEVLL++++E+K   L  HSEKLA+A
Sbjct: 452 FVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALA 511

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + L++   G+ IRIVKNLR C DCH   K ISKIY R+I+VRDR RFHHFK+
Sbjct: 512 YGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKN 563



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH----VQNTLVHMYG 56
           ML+ GV  N+ T   VL+ACA  G L++G+ VH  +   ++G +IH    V   LV MY 
Sbjct: 187 MLQCGVEVNEATVISVLRACADSGALSMGRKVHANLE--EWGIEIHSKSNVSTALVDMYA 244

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G I   RKVFD++  RD   W+AMI G A  GL  DAID+F  M+ SGV PDE T+ 
Sbjct: 245 K-GGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVT 303

Query: 117 TVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            VL+AC + G +  G  + S ++++  +  S+     L+D+ A+ G + +A     +M  
Sbjct: 304 AVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPI 363

Query: 176 RT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
               V W ++I    +HG    A  L + +    +  DD
Sbjct: 364 EPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADD 402


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/471 (42%), Positives = 302/471 (64%), Gaps = 6/471 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N  +  F LK C   GDL  G  +HG +    F  D  +  TL+ +Y +CE   +   KV
Sbjct: 112 NPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD-ACKV 170

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GVCPDEITMVTVLSACTDL 125
           FDE+ +RD+VSW+ +I  Y R   + D + LF +M+      V PD +T +  L AC +L
Sbjct: 171 FDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANL 230

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL+ GK V  FI++  ++ ++ L N L+ M+++CG +DKA ++F  M  R +VSWT++I
Sbjct: 231 GALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMI 290

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN-DFG 244
           +GLAM+G G EA+  F EML+ G+ P++    GLLSACSH GLVD+G  +FD M++ +F 
Sbjct: 291 SGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFK 350

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P + HYGC+VD+L R+  + +A+  I+ M ++ +  IWRTL+ AC   G ++L E + 
Sbjct: 351 IKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVI 410

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             LI  +     +YVLL + Y+ + +WEK T++R +M K+ ++  PG + IEL   ++EF
Sbjct: 411 AHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEF 470

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN-EEDKEDALNKHSEKLAIA 423
           +  D SH + +EIY+ML E+ +++K AGYV   +  L +++ EE+K  AL  HSEKLAIA
Sbjct: 471 IVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIA 530

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           F +L TPP T IR+ KNLR C DCH+  KF+S +Y+R ++VRDR RFHHFK
Sbjct: 531 FGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFK 581



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T    L+ACA +G L+ GK VH  + +      +++ NTLV MY  C G ++  
Sbjct: 213 VKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC-GSMDKA 271

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF+ M ER+ VSW+AMI G A  G   +AI+ F +M   G+ P+E T+  +LSAC+  
Sbjct: 272 YEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHS 331

Query: 126 GALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           G ++ G     F ++       +  ++     ++D+  +   +DKA  L +SM  +   +
Sbjct: 332 GLVDEGMM---FFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDST 388

Query: 181 -WTSVIAGLAMHG 192
            W +++    +HG
Sbjct: 389 IWRTLLGACRVHG 401


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+  N+ T   +LK+ AG+  +++ + VHG  +K  F  DI+V N+L+  YG C  
Sbjct: 424 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC-S 482

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++F+E +  D VS+++MI  YA+ G   +A+ LF +MQ   + PD     ++L+
Sbjct: 483 HVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN 542

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L A E GK +   I K      +   N+L++M+AKCG +D A + F  +  R IVS
Sbjct: 543 ACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVS 602

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G +A+ LF +ML+ GV P+ +  V +L AC+H GLV + + YF+SM+
Sbjct: 603 WSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESME 662

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FG  P  EHY CM+D+L R+G++ EA E + KMP EAN  +W  L+ A     +++L 
Sbjct: 663 ELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELG 722

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + L   EP     +VLL++IYA   +WE   ++R +M    +KK PG + IE+ ++
Sbjct: 723 RRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDK 782

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD+SH++S+EIY  LDE+   M KAGYVP     L D+ + +KE  L  HSEKL
Sbjct: 783 VYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKL 842

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ TP G PIR+ KNLRVC DCH+A K+I KI +REI+VRD +RFHHFKD
Sbjct: 843 AVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKD 897



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 137/241 (56%), Gaps = 9/241 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+FT+  VLKAC+ + DL +GK VHG V+   F  D+ V NTLV MY  C+  ++ 
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLD- 210

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +++FDE+ ER+ VSW+A+   Y +     +A+ LF +M +SG+ P+E ++ ++++ACT 
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     GK +  ++ K   +      NAL+DM+AK GD+  A+ +F  +    IVSW +V
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 185 IAGLAMHGRGLEAVALFEEM--------LEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           IAG  +H    +A+ L  +M        ++  +  D    VGL+   S C L++  R  F
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 390

Query: 237 D 237
           +
Sbjct: 391 N 391



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 142/290 (48%), Gaps = 13/290 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P   +Y  +L  C     L  G  +H  + K    DD  ++N L+++Y  C       R
Sbjct: 53  TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRX-FGYAR 111

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+ DE SE D VSWSA+I GYA+ GL   A+  F +M + GV  +E T  +VL AC+ + 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L +GK V   +        V + N L+ M+AKC +   + +LF  +  R +VSW ++ +
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-----EYFDSMKN 241
                    EAV LF EM+ +G+ P++ +   +++AC+  GL D  R      Y   +  
Sbjct: 232 CYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGY 289

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           D+           +VDM  + G + +A    +K+  + + + W  +I+ C
Sbjct: 290 DWDPFSA----NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGC 334



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 5/290 (1%)

Query: 27  NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGG 86
            + + +H +++K     D+ V   LV MY  C+  +E  R  F+ + E+D ++W+A+I G
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-LEDARMAFNLLPEKDLIAWNAIISG 407

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           Y++     +A+ LF +M   G+  ++ T+ T+L +   L  + V + V     K   +  
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSD 467

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + N+LID + KC  V+ A ++F       +VS+TS+I   A +G+G EA+ LF EM +
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + PD      LL+AC++    ++G++    +   +G +  I     +V+M  + G + 
Sbjct: 528 MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSID 586

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMH 314
           +A     ++  E   + W  +I      G  + A  +  +++  G  P H
Sbjct: 587 DAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 635



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 32/297 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN+F+   ++ AC G+ D + GK +HG ++K  +  D    N LV MY    G
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKV-G 307

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF+++ + D VSW+A+I G         A++L  QM+                
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK---------------- 351

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                      + + S + K  +   + +   L+DM++KC  ++ A   F  +  + +++
Sbjct: 352 -----------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 400

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           W ++I+G + +   +EA++LF EM + G+  +      +L + +   +V   R+    S+
Sbjct: 401 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 460

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           K+ F     I     ++D   +   V++A    ++  I  + + + ++I+A    G+
Sbjct: 461 KSGFH--SDIYVVNSLIDSYGKCSHVEDAERIFEECTI-GDLVSFTSMITAYAQYGQ 514


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/474 (43%), Positives = 299/474 (63%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P++FT   VL+ CAG+     GK VH  VLK+ +  ++ V ++L HMY    G
Sbjct: 80  MHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMK-SG 138

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G KV   M  R+ V+W+ +I G A+ G     +DL+  M++SG+ PD+IT+V+V+S
Sbjct: 139 SLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVIS 198

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +  +L  L  G+ + +   K   N +V + ++LI M++KCG ++ ++K          V 
Sbjct: 199 SSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVL 258

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+S+IA    HGRG EAV LFE+M + G+  +DV F+ LL ACSH GL +KG  +F  M 
Sbjct: 259 WSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMV 318

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P++EHY C+VD+L RSG + EA   I+ MP+EA+ +IW+TL+SAC       +A
Sbjct: 319 EKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMA 378

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++   P   + YVLLS+I+A   RW+  +K+R  M  R +KK PG + +E+ N 
Sbjct: 379 TRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNR 438

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GDKSH  S+EI   L E+  +MK  GYVP T+ V  D + E+KE++L  HSEKL
Sbjct: 439 VFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKL 498

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIAF L+  PPG+PIR++KNLR+C+DCH A K IS I NREI+VRD  RFHHFK
Sbjct: 499 AIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFK 552



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 141/268 (52%), Gaps = 5/268 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++   KVFDEM ER+  +W+AM+ G  +   + + + LFR+M   G  PDE T+ +VL
Sbjct: 37  GDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVL 96

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C  L A   GK V +++ K     ++ + ++L  M+ K G + +  K+ ++M  R +V
Sbjct: 97  RGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVV 156

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +W ++IAG A +G     + L+  M  +G+ PD +  V ++S+ +    + +G++ + ++
Sbjct: 157 AWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEA 216

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K   G    +     ++ M  + G ++++ + +       + ++W ++I+A    G  +
Sbjct: 217 IKA--GANSAVAVLSSLISMYSKCGCLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGE 273

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYA 326
            A  + +++   E +  ++   LS +YA
Sbjct: 274 EAVHLFEQM-EQEGLGGNDVTFLSLLYA 300



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
           M  R++   N LI+   + GD+D A+K+F  M  R + +W ++++GL         + LF
Sbjct: 18  MPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLF 77

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDM 258
            EM E G  PD+     +L  C+       G++   Y      +F ++        +  M
Sbjct: 78  REMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVG----SSLAHM 133

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             +SG + E  + I+ M I  N + W TLI+     G  +
Sbjct: 134 YMKSGSLGEGEKVIKAMRIR-NVVAWNTLIAGNAQNGHFE 172



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ K G++ +A+  F +M  R I+S   +I G   HG    A+ +F+EMLE  V   +  
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV----KEAHEF 271
             GL+         + G   F  M ++ G +P     G ++   C   R     K+ H +
Sbjct: 61  VSGLI----QFEFNENGLFLFREM-HELGFLPDEFTLGSVLRG-CAGLRASYAGKQVHAY 114

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           + K   E N ++  +L       G L   E + K +
Sbjct: 115 VLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAM 150


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+  N+ T   +LK+ AG+  +++ + VHG  +K  F  DI+V N+L+  YG C  
Sbjct: 451 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 510

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++F+E +  D VS+++MI  YA+ G   +A+ LF +MQ   + PD     ++L+
Sbjct: 511 -VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN 569

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L A E GK +   I K      +   N+L++M+AKCG +D A + F  +  R IVS
Sbjct: 570 ACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVS 629

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G +A+ LF +ML+ GV P+ +  V +L AC+H GLV + + YF+SM+
Sbjct: 630 WSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESME 689

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FG  P  EHY CM+D+L R+G++ EA E + KMP EAN  +W  L+ A     +++L 
Sbjct: 690 ELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELG 749

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + L   EP     +VLL++IYA   +WE   ++R +M    +KK PG + IE+ ++
Sbjct: 750 RRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDK 809

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD+SH++S+EIY  LDE+   M KAGYVP     L D+ + +KE  L  HSEKL
Sbjct: 810 VYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKL 869

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ TP G PIR+ KNLRVC DCH+A K+I KI +REI+VRD +RFHHFKD
Sbjct: 870 AVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKD 924



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 161/291 (55%), Gaps = 13/291 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+FT+  VLKAC+ + DL +GK VHG V+   F  D+ V NTLV MY  C+  ++ 
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLD- 210

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +++FDE+ ER+ VSW+A+   Y ++    +A+ LF +M +SG+ P+E ++ ++++ACT 
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     GK +  ++ K   +      NAL+DM+AK GD+  A+ +F  +    IVSW +V
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-----M 239
           IAG  +H    +A+ L  +M  +G+ P+       L AC+  GL + GR+   S     M
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDM 390

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           ++D  +         +VDM  +   +++A      +P E + I W  +IS 
Sbjct: 391 ESDLFVSVG------LVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 434



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 5/316 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN FT    LKACAG+G   LG+ +H +++K     D+ V   LV MY  C+ 
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 409

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R  F+ + E+D ++W+A+I GY++     +A+ LF +M   G+  ++ T+ T+L 
Sbjct: 410 -LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 468

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +   L  + V + V     K   +  + + N+LID + KC  V+ A ++F       +VS
Sbjct: 469 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 528

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           +TS+I   A +G+G EA+ LF EM +  + PD      LL+AC++    ++G++    + 
Sbjct: 529 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G +  I     +V+M  + G + +A     ++  E   + W  +I      G  + A
Sbjct: 589 K-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQA 646

Query: 301 ESITKRLI--GNEPMH 314
             +  +++  G  P H
Sbjct: 647 LQLFNQMLKEGVSPNH 662



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 142/290 (48%), Gaps = 13/290 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P   +Y  +L  C     L  G  +H  + K    DD  ++N L+++Y  C       R
Sbjct: 53  TPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRN-FGYAR 111

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+ DE SE D VSWSA+I GYA+ GL   A+  F +M + GV  +E T  +VL AC+ + 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L +GK V   +        V + N L+ M+AKC +   + +LF  +  R +VSW ++ +
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-----EYFDSMKN 241
                    EAV LF EM+ +G+ P++ +   +++AC+  GL D  R      Y   +  
Sbjct: 232 CYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGY 289

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           D+           +VDM  + G + +A    +K+  + + + W  +I+ C
Sbjct: 290 DWDPFSA----NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGC 334



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 154/297 (51%), Gaps = 5/297 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN+F+   ++ AC G+ D + GK +HG ++K  +  D    N LV MY    G
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKV-G 307

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF+++ + D VSW+A+I G         A++L  QM+ SG+CP+  T+ + L 
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G  E+G+ + S + K  +   + +   L+DM++KC  ++ A   F  +  + +++
Sbjct: 368 ACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 427

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           W ++I+G + +   +EA++LF EM + G+  +      +L + +   +V   R+    S+
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           K+ F     I     ++D   +   V++A    ++  I  + + + ++I+A    G+
Sbjct: 488 KSGFH--SDIYVVNSLIDSYGKCSHVEDAERIFEECTI-GDLVSFTSMITAYAQYGQ 541


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 296/455 (65%), Gaps = 3/455 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +  L  G +VH   +   FG D  VQ  LV +Y  C G + + RK+FD + +R  V+W+A
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKC-GQLPVARKLFDAIRDRSVVAWNA 180

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GY + GL+  AI+++R+MQ++ V PD  T VT LSAC   GAL++G+ VE  I    
Sbjct: 181 MISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQ 240

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++ SV L +AL++M+A+CG V KA   F  +  R +V+WTS+IAG  MHG G EA+ LF 
Sbjct: 241 MDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFH 300

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
            M   G  P+DV FV +L+AC+H GLV++GR  FDSMK  +G++P+ EHY  MVDM  R+
Sbjct: 301 LMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRA 360

Query: 263 GRVKEAHEFIQ-KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           G + +A +FI+  +P E  P +W  ++ AC       L   + +RLI  EP + S+ VLL
Sbjct: 361 GLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLL 420

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S+IYA   +     K+R VM KR +KK  G +LIEL    + F  G+KSH Q++EIY+ L
Sbjct: 421 SNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYL 480

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL-LKTPPGTPIRIVKN 440
           +E+  ++  AGYVP T  VL ++ EE++E AL  HSEKLA+A+ L + +   TPIR++KN
Sbjct: 481 EELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKN 540

Query: 441 LRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LR+C DCH A KF+S + +REI+VRD+HRFHHFKD
Sbjct: 541 LRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKD 575



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 6/190 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T+   L ACA  G L+LG+ V   ++  Q    + + + LV+MY  C G +   
Sbjct: 206 VVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARC-GLVSKA 264

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R  FD + ER+ V+W++MI GY   G   +AI LF  M++ G  P+++T V VL+AC   
Sbjct: 265 RDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHA 324

Query: 126 GALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVDKALKLFR-SMNGRTIVS-W 181
           G +  G+     +++   +V R+   C+ ++DM+ + G +D A++  R S+ G      W
Sbjct: 325 GLVNEGRSAFDSMKRVYGLVPRAEHYCS-MVDMYGRAGLLDDAMQFIRDSIPGEPGPEVW 383

Query: 182 TSVIAGLAMH 191
           T+++    MH
Sbjct: 384 TAMLGACKMH 393


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 302/475 (63%), Gaps = 3/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V+PN FT+  VLKACA + D  +GK +HG  +K        V N+L++MY    G
Sbjct: 340 MLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYAR-SG 398

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK F+ + E++ +S++      A+   S ++ +   +++ +GV     T   +LS
Sbjct: 399 TMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLS 456

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +G +  G+ + + I K     ++ + NALI M++KCG+ + AL++F  M  R +++
Sbjct: 457 GAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVIT 516

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I+G A HG   +A+ LF EMLE GV P++V ++ +LSACSH GL+D+  ++F+SM 
Sbjct: 517 WTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMH 576

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  I P++EHY CMVD+L RSG + EA EFI  MP +A+ ++WRT + +C      KL 
Sbjct: 577 YNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLG 636

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+++  EP   + Y+LLS++YA   RW+    +R+ M ++ + K  G + IE+DN+
Sbjct: 637 EHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQ 696

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD SH Q+++IY+ LDE+  K+K  GY+P T  VL D+ +E KE  L +HSEK+
Sbjct: 697 VHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKI 756

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+AL+ TP   PIR+ KNLRVC DCH+A K+IS +  REIVVRD +RFHH KD
Sbjct: 757 AVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKD 811



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 152/287 (52%), Gaps = 5/287 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIEL 64
           + PN++ +  +L++C+       G ++   +LK  + D  + V   L+ M+      I+ 
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQS 200

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD+M  ++ V+W+ MI  Y++LGL  DA+DLF ++ +S   PD+ T+ ++LSAC +
Sbjct: 201 ARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVE 260

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L    +GK + S++ +  +   V +   L+DM+AK   V+ + K+F +M    ++SWT++
Sbjct: 261 LEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTAL 320

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I+G     +  EA+ LF  ML   V P+   F  +L AC+       G++ +  ++K   
Sbjct: 321 ISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGL 380

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             I  + +   +++M  RSG ++ A +    +  E N I + T   A
Sbjct: 381 STINCVGN--SLINMYARSGTMECARKAFNIL-FEKNLISYNTAADA 424



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 12/283 (4%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS- 73
            +LKAC   G+L LGK +H  ++      D  + N+L+ +Y  C G  E    +F  M  
Sbjct: 44  LLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKC-GDWENALSIFRNMGH 102

Query: 74  -ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISG--VCPDEITMVTVLSACTDLGALE 129
            +RD VSWSA+I  +A   + + A+  F  M Q S   + P+E     +L +C++     
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 130 VGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCG-DVDKALKLFRSMNGRTIVSWTSVIAG 187
            G  + +F+ K    +  V +  ALIDMF K G D+  A  +F  M  + +V+WT +I  
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITR 222

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            +  G   +AV LF  +L +   PD      LLSAC        G++   S     G+  
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLAS 281

Query: 248 KIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            +   GC +VDM  +S  V+ + +    M +  N + W  LIS
Sbjct: 282 DV-FVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALIS 322



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 118 VLSACTDLGALEVGKWVE-SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--N 174
           +L AC   G LE+GK +    I+  +   SV L N+LI +++KCGD + AL +FR+M  +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSV-LLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG---VPPDDVAFVGLLSACSHCGLVDK 231
            R +VSW+++I+  A +     A+  F  ML+     + P++  F  LL +CS+      
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 232 GREYFDSMKNDFGIIPKIEHYGC-MVDMLCRSG-RVKEAHEFIQKMPIEANPIIWRTLIS 289
           G   F  +    G        GC ++DM  + G  ++ A     KM    N + W  +I+
Sbjct: 164 GLAIFAFLLKT-GYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQ-HKNLVTWTLMIT 221

Query: 290 ACCARGELKLAESITKRLIGNE 311
                G L  A  +  RL+ +E
Sbjct: 222 RYSQLGLLDDAVDLFCRLLVSE 243


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/460 (44%), Positives = 295/460 (64%), Gaps = 2/460 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +++AC  +G   +G S+HG +++     D+ VQ +LV MY    G +EL   VF  M  +
Sbjct: 212 LIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAK-NGHLELASCVFRRMLYK 270

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + +SWSA+I G+A+ G + +A+ L   MQ  G  PD +++V+VL AC+ +G L++GK V 
Sbjct: 271 NVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVH 330

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            +I +++    V    A+IDM++KCG +  A  +F  ++ R  +SW ++IA   +HG G 
Sbjct: 331 GYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGE 389

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA++LF +M E  V PD   F  LLSA SH GLV+KGR +F  M N++ I P  +HY CM
Sbjct: 390 EALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACM 449

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R+GRV+EA E I+ M  E    IW  L+S C   G+  + E   K+++   P   
Sbjct: 450 VDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDP 509

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
             Y L+S+ +A   RW++  ++R++M K GMKK+PG +++E++ +++ F+  DKSHHQ +
Sbjct: 510 GIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYE 569

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           EI ++L ++  +MK  GYVP T  VL ++ EE KE  L  HSE+LAIAF LL T PGT +
Sbjct: 570 EIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRL 629

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            I KNLRVC DCH ATKFISKI NREIVVRD  RFHHFKD
Sbjct: 630 LITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKD 669



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 169/329 (51%), Gaps = 16/329 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+  TY  VLKAC    DL  G+      +   +GDD+ V   ++++Y  C G
Sbjct: 96  MASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKC-G 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VFD+M  RD V W+ MI G A+ G + +A+D++RQM    V  D + M+ ++ 
Sbjct: 155 KMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQ 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT LG  ++G  +  ++ ++ +   V +  +L+DM+AK G ++ A  +FR M  + ++S
Sbjct: 215 ACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVIS 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+G A +G    A+ L  +M   G  PD V+ V +L ACS  G +  G       K
Sbjct: 275 WSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLG-------K 327

Query: 241 NDFGIIPKIEHYGC-----MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA--CCA 293
           +  G I +  H+ C     ++DM  + G +  A     ++    + I W  +I++     
Sbjct: 328 SVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHG 386

Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLS 322
            GE  L+  +  R    +P H +   LLS
Sbjct: 387 SGEEALSLFLQMRETNVKPDHATFASLLS 415



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 4/237 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G IE  R+VFD+  +    +W+AMI  Y+R G   +A+ L+ +M   GV PD  T   VL
Sbjct: 53  GHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVL 112

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            ACT    L  G+        Q     V +  A+++++AKCG +D+A+++F  M  R +V
Sbjct: 113 KACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLV 172

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            WT++I GLA +G+  EAV ++ +M +  V  D V  +GL+ AC+  G    G      M
Sbjct: 173 CWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYM 232

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            + D  II  +     +VDM  ++G ++ A    ++M +  N I W  LIS     G
Sbjct: 233 IRKD--IIMDVIVQTSLVDMYAKNGHLELASCVFRRM-LYKNVISWSALISGFAQNG 286



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 148 GLCNA-LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           G  NA LI  +A+ G ++ A ++F       + +W ++I   +  G   EA++L+  M  
Sbjct: 39  GNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMAS 98

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV PD   +  +L AC+    +  G E +     D G    +     ++++  + G++ 
Sbjct: 99  EGVRPDSSTYTVVLKACTRSLDLRSGEETW-RQAVDQGYGDDVFVGAAVLNLYAKCGKMD 157

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           EA     KM    + + W T+I+     G+ + A  I +++
Sbjct: 158 EAMRVFDKMG-RRDLVCWTTMITGLAQNGQAREAVDIYRQM 197


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/511 (39%), Positives = 304/511 (59%), Gaps = 41/511 (8%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------ 56
            +G+ P   T    L AC   G L +G+++HG  +K     + +V   L+ MY       
Sbjct: 117 RHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAA 173

Query: 57  ----------------------SCE---GGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
                                 SC    G ++  R +FD +  +D V W+AM+ GY + G
Sbjct: 174 AARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHG 233

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI----EKQMVNRSV 147
             ++A+ LFRQM  SGV PDE+++V  LSA   LG  E G+W+ SF+     +  V  + 
Sbjct: 234 RPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNA 293

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            +  AL+DM+ KCG +++A+ +FR + G   R +V+W ++I G AMHGR  EA+  F ++
Sbjct: 294 RVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQL 353

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
              G+ P D+ F+G+L+ACSH GLVD+GR  F +M+ ++GI+PK+EHYGCMVD+L R+GR
Sbjct: 354 RAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGR 413

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           V+EA + +Q M  + +  +W +L+ AC     L L + +   L+GN   +   YVLLS++
Sbjct: 414 VEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNM 473

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEM 384
           YA   +W +  ++R +M   G++K PG + +E+   + EFV GD+SH +S EIY  L+E+
Sbjct: 474 YAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEV 533

Query: 385 GRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVC 444
               +  G+VP T  VL D+++  KE AL  HSEKLA+AF L+ TPP T I+IVKNLR C
Sbjct: 534 NSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRAC 593

Query: 445 NDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            DCH+  K +S+   R+IV RDR+RFHHF D
Sbjct: 594 ADCHAVLKLVSEATGRKIVFRDRNRFHHFVD 624



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 43/286 (15%)

Query: 21  AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80
           AG    +    +H A ++     D  V   L   Y +  G ++L   +     +  +V +
Sbjct: 32  AGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAY-AASGRLDLAVALLRRTPDPTAVFY 90

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           ++ I  ++  GL   A+ L  +M +S  G+ P   T+   L AC   G L VG+ +  + 
Sbjct: 91  TSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYA 147

Query: 139 EKQMVNRSVGLCNALIDMF--------------------------------AKCGDVDKA 166
            K  ++    +  AL+ M+                                AK G +D A
Sbjct: 148 VKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDA 207

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
             LF ++  + +V W +++ G   HGR  EA+ LF +ML +GV PD+V+ V  LSA +  
Sbjct: 208 RGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQL 267

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYG----CMVDMLCRSGRVKEA 268
           G  + GR +  S   + G   ++         +VDM  + G ++EA
Sbjct: 268 GTAESGR-WLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEA 312


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 297/468 (63%), Gaps = 1/468 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   +   D+  GK +HG V++     D+++ ++LV MY      IE  
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK-SARIEDS 260

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  +  RDS+SW++++ GY + G   +A+ LFRQM  + V P  +   +V+ AC  L
Sbjct: 261 ERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHL 320

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  ++ +    R++ + +AL+DM++KCG++  A K+F  MN    VSWT++I
Sbjct: 321 ATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAII 380

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG G EAV+LFEEM   GV P+ VAFV +L+ACSH GLVD+   YF+SM   +G+
Sbjct: 381 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 440

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             ++EHY  + D+L R+G+++EA++FI KM +E    +W TL+S+C     L+LAE + +
Sbjct: 441 NQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAE 500

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           ++   +  +   YVL+ ++YA   RW++  K+R  + K+G++K P  + IE+ N+ + FV
Sbjct: 501 KIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFV 560

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH     I E L  +  +M+K GYV  TS VL D++EE K + L  HSE+LA+AF 
Sbjct: 561 SGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 620

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           ++ T PGT IR+ KN+R+C DCH A KFISKI  REI+VRD  RFHHF
Sbjct: 621 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHF 668



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 160/289 (55%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+   +P VLK+C  + DL  G+SVHG +++     D++  N L++MY    G
Sbjct: 96  MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLG 155

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RKVF+ M  +D VS++ +I GYA+ G+  DA+ + R+M  S + PD  T+ +VL 
Sbjct: 156 -IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLP 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             ++   +  GK +  ++ ++ ++  V + ++L+DM+AK   ++ + ++F  +  R  +S
Sbjct: 215 IFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSIS 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W S++AG   +GR  EA+ LF +M+ A V P  VAF  ++ AC+H   +  G++     +
Sbjct: 275 WNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVL 334

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  FG    I     +VDM  + G ++ A +   +M +  + + W  +I
Sbjct: 335 RGGFG--RNIFIASALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAII 380



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V P    +  V+ ACA +  L+LGK +HG VL+  FG +I + + LV MY  C G
Sbjct: 298 MVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKC-G 356

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK+FD M+  D VSW+A+I G+A  G   +A+ LF +M+  GV P+++  V VL+
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 416

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ +G + E   +  S  +   +N+ +    A+ D+  + G +++A      M      
Sbjct: 417 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG 476

Query: 180 S-WTSVIAGLAMH 191
           S W+++++  ++H
Sbjct: 477 SVWSTLLSSCSVH 489



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 2/241 (0%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  +     ++W ++I  +    L + A+  F +M+ SG CPD     +VL +CT +  
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L  G+ V  FI +  ++  +   NAL++M++K   +D   K+F  M  + +VS+ +VIAG
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A  G   +A+ +  EM  + + PD      +L   S    V KG+E    +    GI  
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDS 239

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +     +VDM  +S R++++      +    + I W +L++     G    A  + +++
Sbjct: 240 DVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAGYVQNGRYNEALRLFRQM 298

Query: 308 I 308
           +
Sbjct: 299 V 299


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 302/476 (63%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   +  + F +  V KACA +  L  G  VH   +   FG D  VQ  LV +Y  C G
Sbjct: 99  LLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKC-G 157

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ RK+FD + +R  V+W+AMI GY + GL+  AI+++R+M+++G  PD  T V  LS
Sbjct: 158 KLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLS 217

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GAL++G  VE  I  + +  +V L  AL++M+A+CG V+KA + F  +  R +V+
Sbjct: 218 ACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVT 277

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+IAG  MHG G EAV LF+ M + G PP+DV FV +LSAC+H GLV  GR+ F SMK
Sbjct: 278 WTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMK 337

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ-KMPIEANPIIWRTLISACCARGELKL 299
           + +G++P+ EHY  MVDM  R+G + +A +FI   +P E  P +W  ++ AC       L
Sbjct: 338 SVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSL 397

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + +RLI  EP + S+ VLLS+IYA   +     K+R  M KR +KK  G +LIE+  
Sbjct: 398 GVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGG 457

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F  G+KSH ++ EIY+ L+++  ++  AGY+P T  VL ++ EE++E AL  H EK
Sbjct: 458 VAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPETDSVLHELEEEEREFALRYHGEK 517

Query: 420 LAIAFALLKTPPGT-PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AF L+ T   T PIRI+KNLR+C DCH A K++S + NREI+VRD HRFHHFK
Sbjct: 518 LAVAFGLMMTSGCTAPIRIIKNLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFK 573


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 300/476 (63%), Gaps = 2/476 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M E G+  ++ T    +KA   + +L  GK +    +K  F +D+ V + ++ MY  C G
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC-G 1148

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    ++F E+S  D V+W+ MI GY   G    A+ ++  M++SGV PDE T  T++ 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A + L ALE GK + + + K   +    +  +L+DM+ KCG V  A ++FR M+ R +V 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W +++ GLA HG   EA+ LF  M   G+ PD V F+G+LSACSH GL  +  +YFD+M 
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              +GI P+IEHY C+VD L R+GR++EA   I  MP +A+  ++R L+ AC  +G+ + A
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            + +  +L+  +P   S YVLLS+IYA   +W+  T  R +M  + +KK PG + I++ N+
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG-YVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++ FV  D+SH Q+  IYE ++++ +++++ G YVP T   LLD+ EE+KE AL  HSEK
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEK 1508

Query: 420  LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LAIAF L+ TPP   IR++KNLRVC DCHSA K ISK+  REIV+RD +RFHHF++
Sbjct: 1509 LAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRN 1564



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 165/317 (52%), Gaps = 14/317 (4%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGD----LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
            +L  G+ P++FT   VL+AC+  GD      LG  VH   +K    +D  V   L+ +Y 
Sbjct: 986  LLRDGLKPDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY- 1043

Query: 57   SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            S  G ++    +     + D  SW+A++ GY +   S  A++ F  M   G+  DEIT+ 
Sbjct: 1044 SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLA 1103

Query: 117  TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            T + A   L  L+ GK ++++  K   N  + + + ++DM+ KCGD+  AL+LF  ++  
Sbjct: 1104 TAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP 1163

Query: 177  TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
              V+WT++I+G   +G    A++++  M  +GV PD+  F  L+ A S    +++G++ +
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 236  FDSMKNDFGIIPKIEHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
             + +K D+     ++H+    +VDM C+ G V++A+   +KM +    + W  ++     
Sbjct: 1224 ANVVKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQ 1278

Query: 294  RGELKLAESITKRLIGN 310
             G +  A ++ + +  N
Sbjct: 1279 HGHVDEALNLFRTMQSN 1295



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 8/317 (2%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            +L   +  +  T   +L A  G  DL+LG+ +H  V+K  F   + V N+L++MY S  G
Sbjct: 885  LLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMY-SKAG 943

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    K F    E D +SW+ MI  YA+  L  +AI  FR +   G+ PD+ T+ +VL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 121  ACT--DLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC+  D G    +G  V  +  K  +     +  ALID+++K G +D+A  L        
Sbjct: 1004 ACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD 1063

Query: 178  IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            + SW +++ G     +  +A+  F  M E G+P D++     + A S C +  K  +   
Sbjct: 1064 LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQ 1122

Query: 238  SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +     G    +     ++DM  + G +  A E   ++    + + W T+IS     G+ 
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDE 1181

Query: 298  KLAESITK--RLIGNEP 312
              A S+    R+ G +P
Sbjct: 1182 DHALSVYHLMRVSGVQP 1198



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 69   FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
            FD+ S  +  +W+  +  +   G    AID F+ +  S +  D +T+V +LSA      L
Sbjct: 853  FDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDL 910

Query: 129  EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            ++G+ + + + K      V + N+L++M++K G V  A K F +     ++SW ++I+  
Sbjct: 911  DLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSY 970

Query: 189  AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--SMKNDF--- 243
            A +   +EA+  F ++L  G+ PD      +L ACS     D+G EYF   S  + +   
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIK 1026

Query: 244  -GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             GII        ++D+  + G++ EA EF+     + +   W  ++
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 33/326 (10%)

Query: 3    EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG- 61
            E+G S  + T   +LK C   G + + ++VHG  +K  F  D+ V   LV++Y  C+ G 
Sbjct: 710  EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIY--CKYGL 767

Query: 62   IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            +   R +FD+M ERD+V W+ M+  Y       +A+  F     SG  PD   +  V+  
Sbjct: 768  VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGG 827

Query: 122  CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                   +V    +   E+                         A+K+F    G  I +W
Sbjct: 828  VNS----DVSNNRKRHAEQVKA---------------------YAMKMFPFDQGSNIFAW 862

Query: 182  TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMK 240
               +      G+ + A+  F+ +L + +  D V  V +LSA      +D G + +   +K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + F   P +     +++M  ++G V  A +     P E + I W T+IS+  A+  L++ 
Sbjct: 923  SSFA--PVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS-YAQNNLEME 978

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYA 326
               T R +  + +    + L S + A
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRA 1004



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 18  KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDS 77
           ++   + DL LGK  H  ++      D ++ N L+ MY  C G +   R+VFD+ S+RD 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKC-GSLCSARQVFDKSSDRDL 677

Query: 78  VSWSAMIGGYARLGLST-----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           V+W++++  YA+   S+     +   LF  ++  G     +T+  +L  C   G ++V +
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V  +  K      + +  AL++++ K G V +A  LF  M  R  V W  ++     + 
Sbjct: 738 TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 193 RGLEAVALFEEMLEAGVPPD 212
              EA+  F     +G  PD
Sbjct: 798 FQDEALRFFSAFHRSGFFPD 817


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 299/478 (62%), Gaps = 9/478 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N  T   ++ AC    +L LG S+H + LK+ F  D+ V N  + MY  C G
Sbjct: 143 MNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKC-G 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +K+FDEM  +  +SW+AM+ GYA+ GL+T+ ++L+R M ++GV PD +T+V VLS
Sbjct: 202 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLS 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +LGA  VG  VE  I+      +  L NALI+M+A+CG++ KA  +F  M  RT+VS
Sbjct: 262 SCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS 321

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G  MHG G  AV LF+EM+ +G+ PD  AFV +LSACSH GL D+G EYF  MK
Sbjct: 322 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P  EHY CMVD+L R+GR+KEA   I+ MPI+ +  +W  L+ AC     ++LA
Sbjct: 382 RNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELA 441

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +R+I  EP +   YVLLS+IY+     +   +IR +M ++ +KK PG + +EL   
Sbjct: 442 ELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGR 501

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK---HS 417
           ++ F+ GD++H QS EIY +L+E+   + +    P       D  EE  +D   +   HS
Sbjct: 502 VHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK-----DNREESNKDGFTRVGVHS 556

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLA+AF LL T  G  + I+KNLR+C DCH   K +SKI +R++ VRD  RFHHF++
Sbjct: 557 EKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 614



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 162/318 (50%), Gaps = 11/318 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G  PN FT+PF LK+CA +    LG   HG + K     +  VQ  L+ MY  C+G
Sbjct: 40  MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMY--CKG 97

Query: 61  G-IELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             ++  RKVF+E   S + +V ++A++ GY      ++A+ LFRQM   GV  + +T++ 
Sbjct: 98  SLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLG 157

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           ++ AC     LE+G  +     K   +  V + N  I M+ KCG V+ A KLF  M  + 
Sbjct: 158 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 217

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-F 236
           ++SW ++++G A +G     + L+  M   GV PD V  VG+LS+C++ G    G E  F
Sbjct: 218 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEF 277

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
               + F   P + +   +++M  R G + +A      MP E   + W  +I      G 
Sbjct: 278 KIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGH 334

Query: 297 LKLAESITKRLI--GNEP 312
            ++A  + K +I  G EP
Sbjct: 335 GEIAVQLFKEMIRSGIEP 352


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/506 (39%), Positives = 302/506 (59%), Gaps = 33/506 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE 59
           E  ++P++FT   VL ACA +G++ +GK VH  +L+ +   +  V N L+  Y   GS E
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E  R++F  M+ RD V+W+AMI GY + 
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G + +AIDLFR M   G  P+  T+  VLS C  L  L+ GK +     + ++ RS  + 
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVS 469

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           NA+I M+A+ G    A ++F  +  R   ++WTS+I  LA HG+G EAV LFEEML AGV
Sbjct: 470 NAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGV 529

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD + +VG+LSACSH G V++G+ Y+D +KN+  I P++ HY CMVD+L R+G   EA 
Sbjct: 530 EPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 589

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFI++MP+E + I W +L+SAC      +LAE   ++L+  +P +   Y  ++++Y+   
Sbjct: 590 EFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 649

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    +I +   ++ ++K  G +   + ++I+ F   D  H Q   +Y M   M  ++K
Sbjct: 650 RWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 709

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AG+VP    VL D+++E KE+ L++HSEKLAIAF L+ TP  T +R++KNLRVCNDCH+
Sbjct: 710 GAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHA 769

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K ISK+ +REI+VRD  RFHHF+D
Sbjct: 770 AIKAISKVTDREIIVRDATRFHHFRD 795



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 69/379 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M   G +P +FT   VL +CA      +G+ VH  V+K   G  + V N++++MYG C  
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L   +F+ M  R  VSW+AMI GY + 
Sbjct: 215 AETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQN 274

Query: 91  GLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           GL   A+ LF R +  S + PDE T+ +VLSAC +LG + +GK V ++I +  +  +  +
Sbjct: 275 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 334

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI  +AK                                  GD++ A ++F  MN R
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
            +V+WT++I G   +GR  EA+ LF  M+  G  P+      +LS C+    +D G++ +
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++++       + +   ++ M  RSG    A     ++      I W ++I A    G
Sbjct: 455 CRAIRSLLERSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 296 ELKLAESITKRLI--GNEP 312
           + + A  + + ++  G EP
Sbjct: 513 QGEEAVGLFEEMLRAGVEP 531



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 72/361 (19%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----------- 61
           Y  +L+ C    +   G+++H   +K       ++ N L+  YG   GG           
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 62  --IELGRK-----------------------VFDEMSERDSVSWSAMIGGYARLGLSTDA 96
             I L R+                       VF EM ERD+VSW+ M+ G  R G   +A
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           I     M   G  P + T+  VLS+C    A  VG+ V SF+ K  +   V + N++++M
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 157 FAKCGD-------------------------------VDKALKLFRSMNGRTIVSWTSVI 185
           + KCGD                               +D A  LF SM GR+IVSW ++I
Sbjct: 209 YGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMI 268

Query: 186 AGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDF 243
           AG   +G   +A+ LF  ML E+ + PD+     +LSAC++ G V  G++     ++ + 
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAES 302
               ++ +   ++    +SG V+ A   + Q M  + N I +  L+      G+++ A  
Sbjct: 329 AYNSQVTN--ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 303 I 303
           +
Sbjct: 387 M 387



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   VL  CA +  L+ GK +H   ++        V N ++ MY    G
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYAR-SG 480

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                R++FD++  R ++++W++MI   A+ G   +A+ LF +M  +GV PD IT V VL
Sbjct: 481 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 540

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SAC+  G +  GK + +    +  +   +     ++D+ A+ G   +A +  R M     
Sbjct: 541 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 600

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            ++W S+++   +H +  E   L  E L +  P +  A+  + +  S CG
Sbjct: 601 AIAWGSLLSACRVH-KNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 649



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           F E  +  R+V   N+L+ MFAK G +  A  +F  M  R  VSWT ++ GL   GR  E
Sbjct: 88  FDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGE 147

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+    +M   G  P       +LS+C+       GR+   S     G+   +     ++
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVL 206

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           +M  + G  + A    ++MP+ +    W  ++S     G + LAES+ + + G
Sbjct: 207 NMYGKCGDAETASTVFERMPVRSVS-SWNAMVSLNTHLGRMDLAESLFESMPG 258


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 300/476 (63%), Gaps = 2/476 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M E G+  ++ T    +KA   + +L  GK +    +K  F +D+ V + ++ MY  C G
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC-G 1148

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    ++F E+S  D V+W+ MI GY   G    A+ ++  M++SGV PDE T  T++ 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A + L ALE GK + + + K   +    +  +L+DM+ KCG V  A ++FR M+ R +V 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W +++ GLA HG   EA+ LF  M   G+ PD V F+G+LSACSH GL  +  +YFD+M 
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              +GI P+IEHY C+VD L R+GR++EA   I  MP +A+  ++R L+ AC  +G+ + A
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            + +  +L+  +P   S YVLLS+IYA   +W+  T  R +M  + +KK PG + I++ N+
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG-YVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++ FV  D+SH Q+  IYE ++++ +++++ G YVP T   LLD+ EE+KE AL  HSEK
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEK 1508

Query: 420  LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LAIAF L+ TPP   IR++KNLRVC DCHSA K ISK+  REIV+RD +RFHHF++
Sbjct: 1509 LAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRN 1564



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 165/317 (52%), Gaps = 14/317 (4%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGD----LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
            +L  G+ P++FT   VL+AC+  GD      LG  VH   +K    +D  V   L+ +Y 
Sbjct: 986  LLRDGLKPDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY- 1043

Query: 57   SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            S  G ++    +     + D  SW+A++ GY +   S  A++ F  M   G+  DEIT+ 
Sbjct: 1044 SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLA 1103

Query: 117  TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            T + A   L  L+ GK ++++  K   N  + + + ++DM+ KCGD+  AL+LF  ++  
Sbjct: 1104 TAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRP 1163

Query: 177  TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
              V+WT++I+G   +G    A++++  M  +GV PD+  F  L+ A S    +++G++ +
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 236  FDSMKNDFGIIPKIEHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
             + +K D+     ++H+    +VDM C+ G V++A+   +KM +    + W  ++     
Sbjct: 1224 ANVVKLDY----SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQ 1278

Query: 294  RGELKLAESITKRLIGN 310
             G +  A ++ + +  N
Sbjct: 1279 HGHVDEALNLFRTMQSN 1295



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 8/317 (2%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            +L   +  +  T   +L A  G  DL+LG+ +H  V+K  F   + V N+L++MY S  G
Sbjct: 885  LLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMY-SKAG 943

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    K F    E D +SW+ MI  YA+  L  +AI  FR +   G+ PD+ T+ +VL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 121  ACT--DLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC+  D G    +G  V  +  K  +     +  ALID+++K G +D+A  L        
Sbjct: 1004 ACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD 1063

Query: 178  IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            + SW +++ G     +  +A+  F  M E G+P D++     + A S C +  K  +   
Sbjct: 1064 LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA-SGCLINLKQGKQIQ 1122

Query: 238  SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +     G    +     ++DM  + G +  A E   ++    + + W T+IS     G+ 
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDE 1181

Query: 298  KLAESITK--RLIGNEP 312
              A S+    R+ G +P
Sbjct: 1182 DHALSVYHLMRVSGVQP 1198



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 69   FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
            FD+ S  +  +W+  +  +   G    AID F+ +  S +  D +T+V +LSA      L
Sbjct: 853  FDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDL 910

Query: 129  EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            ++G+ + + + K      V + N+L++M++K G V  A K F +     ++SW ++I+  
Sbjct: 911  DLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSY 970

Query: 189  AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--SMKNDF--- 243
            A +   +EA+  F ++L  G+ PD      +L ACS     D+G EYF   S  + +   
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIK 1026

Query: 244  -GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             GII        ++D+  + G++ EA EF+     + +   W  ++
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 33/326 (10%)

Query: 3    EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG- 61
            E+G S  + T   +LK C   G + + ++VHG  +K  F  D+ V   LV++Y  C+ G 
Sbjct: 710  EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIY--CKYGL 767

Query: 62   IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            +   R +FD+M ERD+V W+ M+  Y       +A+  F     SG  PD   +  V+  
Sbjct: 768  VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGG 827

Query: 122  CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                   +V    +   E+                         A+K+F    G  I +W
Sbjct: 828  VNS----DVSNNRKRHAEQVKA---------------------YAMKMFPFDQGSNIFAW 862

Query: 182  TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMK 240
               +      G+ + A+  F+ +L + +  D V  V +LSA      +D G + +   +K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + F   P +     +++M  ++G V  A +     P E + I W T+IS+  A+  L++ 
Sbjct: 923  SSFA--PVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS-YAQNNLEME 978

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYA 326
               T R +  + +    + L S + A
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRA 1004



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 18  KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDS 77
           ++   + DL LGK  H  ++      D ++ N L+ MY  C G +   R+VFD+ S+RD 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKC-GSLCSARQVFDKSSDRDL 677

Query: 78  VSWSAMIGGYARLGLST-----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           V+W++++  YA+   S+     +   LF  ++  G     +T+  +L  C   G ++V +
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V  +  K      + +  AL++++ K G V +A  LF  M  R  V W  ++     + 
Sbjct: 738 TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 193 RGLEAVALFEEMLEAGVPPD 212
              EA+  F     +G  PD
Sbjct: 798 FQDEALRFFSAFHRSGFXPD 817


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 301/477 (63%), Gaps = 4/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ++  G+ PN  T   ++   +  G   L + +HG VLK  F  +  V   +  ++  C  
Sbjct: 304 LMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLH--CRL 361

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +E  RK FD M E+   SW+AMI GYA+ GL+  A+ LF QM    V P+ IT+ + L
Sbjct: 362 NDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTL 421

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LGAL +GKW+   I ++ +  +V +  ALIDM+AKCG + +A ++F +M+ + +V
Sbjct: 422 SACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVV 481

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++IAG  +HG+G EA+ L+++ML+A + P    F+ +L ACSH GLV++G + F SM
Sbjct: 482 SWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSM 541

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELK 298
            +D+ I P IEH  CMVD+L R+G++KEA E I + P  A  P +W  L+ AC    +  
Sbjct: 542 TDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSD 601

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LA+  +++L   +P +   YVLLS+++    ++ +   +R+    R + K PG TLIE+ 
Sbjct: 602 LAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIG 661

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N+ + F+ GD++H QS+ IY  L+++  KM +AGY P T   L D+ EE+KE  +  HSE
Sbjct: 662 NKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSE 721

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF LL T PGT IRI+KNLRVC DCH+ATKFISK+  R IVVRD  RFHHF+D
Sbjct: 722 KLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRD 778



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 159/322 (49%), Gaps = 4/322 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V P+  T   VL A A + D+ +G+ VH    K    +  HV   L+ +Y  C G +E 
Sbjct: 207 SVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKC-GDVES 265

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M + D V+++A+I GY+  G+   +++LF ++   G+ P+  T+V ++   + 
Sbjct: 266 ARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSP 325

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G   + + +  F+ K     +  +  A+  +  +  D++ A K F +M  +T+ SW ++
Sbjct: 326 FGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAM 385

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+G A +G    AVALFE+M++  V P+ +     LSAC+  G +  G+ +   +  +  
Sbjct: 386 ISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGK-WLHRIITEED 444

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P +     ++DM  + G + EA      M    N + W  +I+     G+   A  + 
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVVSWNAMIAGYGLHGQGAEALKLY 503

Query: 305 KRLIGNEPMHESNYVLLSHIYA 326
           K ++ +  +  ++   LS +YA
Sbjct: 504 KDML-DAHLLPTSATFLSVLYA 524



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 172/387 (44%), Gaps = 59/387 (15%)

Query: 8   PNKFTYPFVLKACAGI-------GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           P+ F++ F   + A +          +  +++H   +   +  D  V + L  +Y     
Sbjct: 105 PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSR 164

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            ++  RKVFD +   D+V W+ ++ G +     ++A++ F +M   G V PD  T+ +VL
Sbjct: 165 -VDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVL 219

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A  ++  + +G+ V SF EK  +     +   LI +++KCGDV+ A  LF  M    +V
Sbjct: 220 PAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLV 279

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------------- 224
           ++ ++I+G +++G    +V LF E++  G+ P+    V L+   S               
Sbjct: 280 AYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFV 339

Query: 225 ------------------HCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
                             HC L D    R+ FD+M         +E +  M+    ++G 
Sbjct: 340 LKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEK-----TMESWNAMISGYAQNGL 394

Query: 265 VKEA---HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
            + A    E + K+ +  NPI   + +SAC   G L L + +  R+I  E +  + YV+ 
Sbjct: 395 TEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWL-HRIITEEDLEPNVYVMT 453

Query: 322 SHI--YAKLLRWEKKTKIREVMDKRGM 346
           + I  YAK     +  +I   MD + +
Sbjct: 454 ALIDMYAKCGSISEARRIFNTMDNKNV 480


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 304/475 (64%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+      VL+A   + DL  GKS+HG V+K     +  +  +L  +Y  C G
Sbjct: 265 MRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKC-G 323

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + R  F+++     + W+AMI GY + G + +AI+LFR M+   + PD IT+ + ++
Sbjct: 324 HVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIA 383

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G+LE+ +W++ +I        V +  +LID +AKCG VD A  +F  +  + +V 
Sbjct: 384 ACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVV 443

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W++++ G  +HG+G E++ LF  M +AGV P+DV FVGLL+AC + GLV++G + F  M+
Sbjct: 444 WSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR 503

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P+ +HY C+VD+L R+G +  A+ F+  MPIE    +W  L+SAC     + L 
Sbjct: 504 -DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLG 562

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +RL   +P +  +YV LS++YA    W+   K+R +M ++G+ K  G ++IE++ +
Sbjct: 563 EYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGK 622

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +  F  GDK+H +SKEI+E ++++ R++K+AG+VP T  VL D+N E+ E+ L  HSE+L
Sbjct: 623 LQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERL 682

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TPPGT +RI KNLR C++CH+A K ISK+ +REIVVRD  RFHHFKD
Sbjct: 683 AIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKD 737



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 13/288 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           VSP+ F++P VLKAC+ +  L +G+ VHG + +  F  D+ VQN LV +Y  C G I   
Sbjct: 169 VSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKC-GEIVRA 227

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF  + +R  VSW+++I GYA+ G   +A+ +F +M+ + V PD I +V+VL A TD+
Sbjct: 228 NAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDV 287

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             LE GK +   + K  +     L  +L  ++AKCG V  A   F  +   +++ W ++I
Sbjct: 288 EDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMI 347

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYF--DSMK 240
           +G   +G   EA+ LF  M    + PD +     ++AC+  G ++  R   EY      +
Sbjct: 348 SGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFR 407

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           ND  +         ++D   + G V  A     ++P + + ++W  ++
Sbjct: 408 NDVIVNTS------LIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMM 448



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 138/279 (49%), Gaps = 43/279 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RK+FD+  + D   W+A++  Y+R G    AI+++ +MQ++ V PD  +   VL
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ L ALE+G+ V   I +      V + N L+ ++AKCG++ +A  +F  +  RTIV
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIV 240

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------------- 224
           SWTS+I+G A +G+ +EA+ +F EM +  V PD +A V +L A +               
Sbjct: 241 SWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCV 300

Query: 225 --------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
                                CG V   R +F+ ++N     P +  +  M+    ++G 
Sbjct: 301 IKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVEN-----PSLIFWNAMISGYVKNGY 355

Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLA 300
            +EA E  + M    I  + I   + I+AC   G L+LA
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA 394



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 2/148 (1%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L   L++  +  G+V  A KLF       +  W +++   + HG    A+ ++  M  A 
Sbjct: 109 LIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVAC 168

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD  +F  +L ACS    ++ GR     +    G    +     +V +  + G +  A
Sbjct: 169 VSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH-GFESDVFVQNGLVALYAKCGEIVRA 227

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGE 296
           +    ++ ++   + W ++IS     G+
Sbjct: 228 NAVFGRL-VDRTIVSWTSIISGYAQNGQ 254


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/498 (42%), Positives = 308/498 (61%), Gaps = 32/498 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  ++      L ACA +  +N+GK +H   LK      I++QN L++MY  C G
Sbjct: 232 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC-G 290

Query: 61  GIELGRKVFDE-------------------------------MSERDSVSWSAMIGGYAR 89
            I + RK+FDE                               M E+D VSWS+MI GYA+
Sbjct: 291 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 350

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
             L  + + LF++MQ+SG  PDE T+V+V+SAC  L ALE GKWV ++I++  +  +V L
Sbjct: 351 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 410

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              LIDM+ KCG V+ AL++F  M  + I +W ++I GLAM+G    ++ +F  M +  V
Sbjct: 411 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 470

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+++ F+G+L AC H GLVD+G+ +F SM +D  I P ++HYGCMVD+L R+G+++EA 
Sbjct: 471 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 530

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E + +MP+  +   W  L+ AC   G+ ++   + ++LI  +P H+  +VLLS+IYA   
Sbjct: 531 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKG 590

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +W+   +IR +M K  + KIPG ++IE +  I+EF+ GDK+H     I +ML EM  K+K
Sbjct: 591 KWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 650

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P  +EVLLD++EE+KE  L +HSEKLAIAF L+   P TPIRI+KNLR+CNDCH+
Sbjct: 651 LEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHT 710

Query: 450 ATKFISKIYNREIVVRDR 467
           A K ISK + R+IV   R
Sbjct: 711 AAKLISKAFCRKIVFLFR 728



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 163/387 (42%), Gaps = 94/387 (24%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML   +  + +TYP +++AC+        K VH  VLK  F  D++V+NTL++ +  C  
Sbjct: 69  MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 128

Query: 60  ------------------------GGIELGR----------------------------- 66
                                   G IE+G                              
Sbjct: 129 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 188

Query: 67  -------KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                  K+FDEM E+D V+WSA+I  + +  +  +AI  F  M   GV  DE+  V+ L
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------------- 162
           SAC +L  + +GK + S   K      + L NALI M++KCGD                 
Sbjct: 249 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 308

Query: 163 --------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                         VD A  +F SM  + +VSW+S+I+G A +    E +ALF+EM  +G
Sbjct: 309 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 368

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             PD+   V ++SAC+    +++G+     +K + G+   +     ++DM  + G V+ A
Sbjct: 369 FKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETA 427

Query: 269 HEFIQKMPIEANPIIWRTLISACCARG 295
            E    M IE     W  LI      G
Sbjct: 428 LEVFYGM-IEKGISTWNALILGLAMNG 453



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 64/291 (21%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I+  R++F+ +   +   W+ MI  Y +      A  L++ M  + +  D  T   ++ A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C+   +    K V + + K   +  V + N LI+ F+ C ++  A ++F   +    VSW
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 182 TSVIAG-------------------------------LAMHGRGLEAVALFEEMLEA--- 207
            S++AG                                 M G  +EA  LF+EMLE    
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 208 ----------------------------GVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
                                       GV  D+V  V  LSAC++  +V+ G+    S+
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGK-LIHSL 266

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
               G    I     ++ M  + G +  A +   +  +  + I W ++IS 
Sbjct: 267 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYL-LDLISWNSMISG 316


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/465 (41%), Positives = 288/465 (61%), Gaps = 3/465 (0%)

Query: 13  YPF--VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           YPF  VL AC G+G +N GK +H  +++  F D I+V + L+ MY  C+  +   + VFD
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC-LHYAKTVFD 329

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            M +++ VSW+AM+ GY + G + +A+ +F  MQ SG+ PD  T+   +SAC ++ +LE 
Sbjct: 330 RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEE 389

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G           +   V + N+L+ ++ KCGD+D + +LF  MN R  VSWT++++  A 
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQ 449

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
            GR +E + LF++M++ G+ PD V   G++SACS  GLV+KG+ YF  M +++GI+P I 
Sbjct: 450 FGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           HY CM+D+  RSGR++EA  FI  MP   + I W TL+SAC  +G L++ +   + LI  
Sbjct: 510 HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 569

Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
           +P H + Y LLS IYA   +W+   ++R  M ++ +KK PG + I+   +++ F   D+S
Sbjct: 570 DPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDES 629

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
                +IY  L+E+  K+   GY P TS V  D+ E  K   LN HSE+LAIAF L+  P
Sbjct: 630 SPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVP 689

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            G PIR+ KNLRVC DCH+ATK IS +  REI+VRD  RFH FKD
Sbjct: 690 SGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 160/326 (49%), Gaps = 33/326 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++  +  + T   +LK  +  G ++LGK +HG V+K  F   + V + L++MY +  G
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANV-G 188

Query: 61  GIELGRKVFDEMSER------------------------------DSVSWSAMIGGYARL 90
            I   +KVF  + +R                              DSVSW+AMI G A+ 
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQN 248

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           GL+ +AI+ FR+M++ G+  D+    +VL AC  LGA+  GK + + I +      + + 
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM+ KC  +  A  +F  M  + +VSWT+++ G    GR  EAV +F +M  +G+ 
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD       +SAC++   +++G + F       G+I  +     +V +  + G + ++  
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427

Query: 271 FIQKMPIEANPIIWRTLISACCARGE 296
              +M +  + + W  ++SA    G 
Sbjct: 428 LFNEMNVR-DAVSWTAMVSAYAQFGR 452



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 141/342 (41%), Gaps = 70/342 (20%)

Query: 13  YPFVLKACAGIGDLNLG---KSVHGAVLKFQFGDDIHVQNTLVHMYG------------- 56
           Y   +K C G+G  N     K +HG +++     +  + N +VH Y              
Sbjct: 6   YSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFD 65

Query: 57  -----------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL 99
                            S  G I      F+++ +RD V+W+ +I GY+  GL   A+  
Sbjct: 66  RIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 100 FRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWV---------ESFI----------- 138
           +  M          +T++T+L   +  G + +GK +         ES++           
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 139 -------EKQMV----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
                   K++     +R+  + N+L+     CG ++ AL+LFR M  +  VSW ++I G
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKG 244

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGII 246
           LA +G   EA+  F EM   G+  D   F  +L AC   G +++G++     ++ +F   
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ-- 302

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             I     ++DM C+   +  A     +M  + N + W  ++
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMV 343


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/472 (42%), Positives = 292/472 (61%), Gaps = 1/472 (0%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           YG++P   T   +L+ACA + DL  GK +H  ++K     D  V N+L+ MY  C G ++
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKC-GIMD 364

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
                 DEM  +D+VS+SA+I G  + G +  A+ +FRQMQ SG+ P   TM+ +L AC+
Sbjct: 365 NAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACS 424

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L AL+ G     +   +       +CNA+IDM++KCG +  + ++F  M  R I+SW +
Sbjct: 425 HLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT 484

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I G  +HG  +EA++LF+E+   G+ PDDV  + +LSACSH GLV +G+ +F SM  +F
Sbjct: 485 MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNF 544

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            I P++ HY CMVD+L R+G + EA+ FIQ+MP   N  IW  L++AC     +++ E +
Sbjct: 545 NIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQV 604

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
           +K++    P    N+VL+S+IY+ + RW+    IR +    G KK PG + +E+   I+ 
Sbjct: 605 SKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHV 664

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F+ G +SH QS  I + L E+  +MKK GY   +S VL D+ EE+KE  L  HSEK+AIA
Sbjct: 665 FIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIA 724

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F +L T P + I + KNLR+C DCHSA KFI+ +  REI VRD  RFHHFKD
Sbjct: 725 FGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKD 776



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 172/345 (49%), Gaps = 33/345 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV+P  FT+PF+LKAC+ +  L LG+ +H          D++V   L+HMY  C G
Sbjct: 98  MLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKC-G 156

Query: 61  GIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +   + +F+ +S  +RD V+W+AMI  ++   L    I    QMQ +GV P+  T+V++
Sbjct: 157 HLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSI 216

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L       AL  GK + ++  +     +V L  AL+DM+AKC  +  A K+F ++N +  
Sbjct: 217 LPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND 276

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACS-----------HC 226
           V W+++I G  +H    +A+AL+++ML   G+ P       +L AC+           HC
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHC 336

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
            ++  G +   ++ N             ++ M  + G +  A  F+ +M I  + + +  
Sbjct: 337 HMIKSGMDLDTTVGNS------------LISMYAKCGIMDNAVGFLDEM-IAKDTVSYSA 383

Query: 287 LISACCARGELKLAESITKRL--IGNEPMHESNYVLL---SHIYA 326
           +IS C   G  + A  I +++   G  P  E+   LL   SH+ A
Sbjct: 384 IISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAA 428



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 147/294 (50%), Gaps = 14/294 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV+PN  T   +L        L+ GK++H   ++  F D++ +Q  L+ MY  C  
Sbjct: 201 MQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHL 260

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVL 119
            +   RK+F+ +++++ V WSAMIGGY      +DA+ L+  M  I G+ P   T+ T+L
Sbjct: 261 -LFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATML 319

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L  L+ GK +   + K  ++    + N+LI M+AKCG +D A+     M  +  V
Sbjct: 320 RACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTV 379

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-----E 234
           S++++I+G   +G   +A+ +F +M  +G+ P     + LL ACSH   +  G       
Sbjct: 380 SYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYT 439

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                 ND  I   I      +DM  + G++  + E   +M    + I W T+I
Sbjct: 440 VVRGFTNDTSICNAI------IDMYSKCGKITISREIFDRMQ-NRDIISWNTMI 486



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I+L R VFD++ +   V W+ MI  YA  G    +I L+  M   GV P   T   +L A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV 179
           C+ L AL++G+ + +      ++  + +  AL+ M+AKCG + +A  LF S++   R IV
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           +W ++IA  + H    + +    +M +AGV P+    V +L        + +G+
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + PN F++  VLKAC  + D   G+ V+   +K        V N+L+ MY    G
Sbjct: 147 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-SG 205

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD + E++ VS++A++ GYA+   S +A  LF ++  +G+     T  ++LS
Sbjct: 206 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 265

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +GA+  G+ +   + K     +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 266 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 325

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG    A+ +F +MLE G  P+++ +V +LSACSH G++ +G+++F+SM 
Sbjct: 326 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 385

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + GI+P++EHY CMVD+L RSG + EA EFI  MP+ A+ ++WRTL+ AC   G  +L 
Sbjct: 386 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 445

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP   + Y+LLS+++A   +W+   KIR+ M +R + K  G + IE++N 
Sbjct: 446 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 505

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G+ SH Q+ +IY+ LD++  K+K+ GY+P T  VL DI EE KE  L +HSEK+
Sbjct: 506 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 565

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIRI KNLRVC DCH+A K+IS    REIVVRD +RFHH K+
Sbjct: 566 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 620



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 8/320 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--EGGI 62
           G  P++FTY  VL AC  +G L LGK +H  V++     D+ V  +LV MY  C  +G +
Sbjct: 46  GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 105

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  RKVF++M E + +SW+A+I  YA+ G    +AI+LF +M    + P+  +  +VL A
Sbjct: 106 DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 165

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L     G+ V S+  K  +     + N+LI M+A+ G ++ A K F  +  + +VS+
Sbjct: 166 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 225

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            +++ G A + +  EA  LF E+ + G+      F  LLS  +  G + KG +    +  
Sbjct: 226 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 285

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             G          ++ M  R G ++ A +   +M  + N I W ++I+     G    A 
Sbjct: 286 G-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 343

Query: 302 SITKRLI--GNEPMHESNYV 319
            +  +++  G +P +E  YV
Sbjct: 344 EMFHKMLETGTKP-NEITYV 362



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFD+M ER+ V+W+ MI  +A+LG + DAIDLF  M++SG  PD  T  +VLSACT+LG
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGRTIVSWTS 183
            L +GK + S + +  +   V +  +L+DM+AKC   G VD + K+F  M    ++SWT+
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 184 VIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I   A  G    EA+ LF +M+   + P+  +F  +L AC +      G + + S    
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-SYAVK 184

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHE----FIQKMPIEANPII 283
            GI         ++ M  RSGR+++A +      +K  +  N I+
Sbjct: 185 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 229



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           A K+F  M  R +V+WT +I   A  G   +A+ LF +M  +G  PD   +  +LSAC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGC-MVDMLCR---SGRVKEAHEFIQKMPIEANP 281
            GL+  G++   S     G+   +   GC +VDM  +    G V ++ +  ++MP E N 
Sbjct: 64  LGLLALGKQ-LHSRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 120

Query: 282 IIWRTLISACCARGE 296
           + W  +I+A    GE
Sbjct: 121 MSWTAIITAYAQSGE 135


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 297/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G + ++FT+  VL AC  +  L  GK +H  V++    D++ V + LV MY  C   I+ 
Sbjct: 265 GFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRS-IKS 323

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF  M +++ +SW+AM+ GY + G S +A+ +F +MQ +GV PD+ T+ +V+S+C +
Sbjct: 324 AETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCAN 383

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G           +   + + NALI ++ KCG  + + +LF  MN R  VSWT++
Sbjct: 384 LASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTAL 443

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           +AG A  G+  E + LFE ML  G+ PD V F+G+LSACS  GLV+KG +YF+SM  + G
Sbjct: 444 LAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHG 503

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P ++H  C++D+L R+GR++EA  FI  MP   + + W TL+S+C   G++++ +   
Sbjct: 504 IMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAA 563

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             LI  EP + ++YVLLS +YA   +W+K  ++R  M  + ++K PG + I+   +++ F
Sbjct: 564 DSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVF 623

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D+S     +IY  L+++  KM + GYVP  S VL D+ E +K   LN HSEKLAIAF
Sbjct: 624 SADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAF 683

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+  PPG PIR++KNLRVC DCH+ATKFISKI  REI+VRD  RFH FKD
Sbjct: 684 GLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKD 734



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 170/332 (51%), Gaps = 32/332 (9%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS----------- 57
           N+ T+  +L  C+    ++LG+ ++G +LKF FG D+ V + LV MY             
Sbjct: 137 NRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196

Query: 58  ----------CE---------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98
                     C          G IE  +++F  + ERDS+SW+ MI G  + GL  +A+D
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           +FR+M+++G   D+ T  +VL+AC  L AL  GK + +++ +     +V + +AL+DM++
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYS 316

Query: 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           KC  +  A  +F+ M  + ++SWT+++ G   +G   EAV +F EM   GV PDD     
Sbjct: 317 KCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGS 376

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           ++S+C++   +++G + F       G+I  I     ++ +  + G  + +H    +M I 
Sbjct: 377 VISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIR 435

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGN 310
            + + W  L++     G+      + +R++ +
Sbjct: 436 -DEVSWTALLAGYAQFGKANETIGLFERMLAH 466



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 4/243 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+ FT   V+ +CA +  L  G   H   L       I V N L+ +YG C G
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKC-G 420

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E   ++F EM+ RD VSW+A++ GYA+ G + + I LF +M   G+ PD +T + VLS
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G +E G ++ ES I++  +   V  C  +ID+  + G +++A     +M     +
Sbjct: 481 ACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDV 540

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W ++++   +HG  +E      + L A  P +  ++V L S  +  G  DK  +    
Sbjct: 541 VGWATLLSSCRVHG-DMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRG 599

Query: 239 MKN 241
           M++
Sbjct: 600 MRD 602



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 141/319 (44%), Gaps = 51/319 (15%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P  F    ++ A   +G+L     V   + +     ++   NT++ +Y    G +   ++
Sbjct: 38  PETFLSNNLITAYYKLGNLAYAHHVFDHIPQ----PNLFSWNTILSVYSKL-GLLSQMQQ 92

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLG 126
           +F+ M  RD VSW+  I GYA  G  +DA+ +++ M + + +  + IT  T+L  C+   
Sbjct: 93  IFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFR 152

Query: 127 ALEVGKWVESFIEK-------------------------------QMVNRSVGLCNALID 155
            +++G+ +   I K                               +M  R+V +CN +I 
Sbjct: 153 CVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMIT 212

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
              +CG ++++ +LF  +  R  +SWT +I GL  +G   EA+ +F EM  AG   D   
Sbjct: 213 GLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFT 272

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY------GCMVDMLCRSGRVKEAH 269
           F  +L+AC     + +G++           + + +H         +VDM  +   +K A 
Sbjct: 273 FGSVLTACGSLLALGEGKQI-------HAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAE 325

Query: 270 EFIQKMPIEANPIIWRTLI 288
              ++MP + N I W  ++
Sbjct: 326 TVFKRMP-QKNVISWTAML 343


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + PN F++  VLKAC  + D   G+ V+   +K        V N+L+ MY    G
Sbjct: 327 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-SG 385

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD + E++ VS++A++ GYA+   S +A  LF ++  +G+     T  ++LS
Sbjct: 386 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 445

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +GA+  G+ +   + K     +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 446 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 505

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG    A+ +F +MLE G  P+++ +V +LSACSH G++ +G+++F+SM 
Sbjct: 506 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 565

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + GI+P++EHY CMVD+L RSG + EA EFI  MP+ A+ ++WRTL+ AC   G  +L 
Sbjct: 566 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 625

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP   + Y+LLS+++A   +W+   KIR+ M +R + K  G + IE++N 
Sbjct: 626 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 685

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G+ SH Q+ +IY+ LD++  K+K+ GY+P T  VL DI EE KE  L +HSEK+
Sbjct: 686 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 745

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIRI KNLRVC DCH+A K+IS    REIVVRD +RFHH K+
Sbjct: 746 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 800



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 159/292 (54%), Gaps = 10/292 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           MLE G  PN++ +  V++AC+      +G+ ++G V+K  + + D+ V   L+ M+    
Sbjct: 119 MLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGS 178

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    KVFD+M ER+ V+W+ MI  +A+LG + DAIDLF  M++SG  PD  T  +VL
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 238

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGR 176
           SACT+LG L +GK + S + +  +   V +  +L+DM+AKC   G VD + K+F  M   
Sbjct: 239 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 298

Query: 177 TIVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
            ++SWT++I      G    EA+ LF +M+   + P+  +F  +L AC +      G + 
Sbjct: 299 NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 358

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE----FIQKMPIEANPII 283
           + S     GI         ++ M  RSGR+++A +      +K  +  N I+
Sbjct: 359 Y-SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 409



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--EGGI 62
           G  P++FTY  VL AC  +G L LGK +H  V++     D+ V  +LV MY  C  +G +
Sbjct: 226 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 285

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  RKVF++M E + +SW+A+I  Y + G    +AI+LF +M    + P+  +  +VL A
Sbjct: 286 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 345

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L     G+ V S+  K  +     + N+LI M+A+ G ++ A K F  +  + +VS+
Sbjct: 346 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 405

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            +++ G A + +  EA  LF E+ + G+      F  LLS  +  G + KG +    +  
Sbjct: 406 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 465

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             G          ++ M  R G ++ A +   +M  + N I W ++I+     G    A 
Sbjct: 466 G-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 523

Query: 302 SITKRLI--GNEPMHESNYV 319
            +  +++  G +P +E  YV
Sbjct: 524 EMFHKMLETGTKP-NEITYV 542



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 11/303 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +    P+  TY  +LK+C    +  LGK VH  +++     D  V NTL+ +Y  C G
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKC-G 75

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             E  R +F+ M ++RD VSWSAM+  +A   +   AI  F  M   G  P+E     V+
Sbjct: 76  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 135

Query: 120 SACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAK-CGDVDKALKLFRSMNGRT 177
            AC++     VG+ +  F+ K   +   V +   LIDMF K  GD+  A K+F  M  R 
Sbjct: 136 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERN 195

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+WT +I   A  G   +A+ LF +M  +G  PD   +  +LSAC+  GL+  G++   
Sbjct: 196 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ-LH 254

Query: 238 SMKNDFGIIPKIEHYGC-MVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           S     G+   +   GC +VDM  +    G V ++ +  ++MP E N + W  +I+A   
Sbjct: 255 SRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQ 312

Query: 294 RGE 296
            GE
Sbjct: 313 SGE 315


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 303/509 (59%), Gaps = 34/509 (6%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC- 58
           ML Y  ++P++FT   VL ACA +G +++GK VH  +L+ +      V N L+ MY    
Sbjct: 285 MLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSG 344

Query: 59  --------------------------EGGIELG-----RKVFDEMSERDSVSWSAMIGGY 87
                                     EG ++LG     R++FD MS RD V+W+AMI GY
Sbjct: 345 SVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGY 404

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            + G + +A++LFR M  SG  P+  T+  VLS C  L  LE GK +     + +  +S 
Sbjct: 405 EQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSS 464

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
            + N+++ M+A+ G +  A ++F  ++ R   V+WTS+I  LA HG G +AV LFEEML 
Sbjct: 465 SVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLR 524

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV PD + FVG+LSAC+H G VD+G+ YF  +++  GI+P++ HY CMVD+L R+G   
Sbjct: 525 VGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFS 584

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA EFIQ+MP+E + I W +L+SAC       LAE   ++L+  +P +   Y  LS++Y+
Sbjct: 585 EAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYS 644

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              RW    KI +    + +KK  G +   + N ++ F   D  H Q   +Y    +M  
Sbjct: 645 ACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWD 704

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
            +KKAG+VP    VL D+++E KE+ L++HSEKLAIAF L+ TP  T +RI+KNLRVCND
Sbjct: 705 DIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCND 764

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+A KFISK+ +REI++RD  RFHHFKD
Sbjct: 765 CHTAIKFISKVADREIILRDATRFHHFKD 793



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 157/371 (42%), Gaps = 89/371 (23%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SP +FT   VL +CA      +G+ VH  V+K      + V N++++MYG C G
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC-G 211

Query: 61  GIELGRKVFDEMSERDS-------------------------------VSWSAMIGGYAR 89
             E  R VF+ M ER                                 VSW+A+I GY +
Sbjct: 212 DAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQ 271

Query: 90  LGLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            GL+  A+  F R +  S + PDE T+ +VLSAC +LG + +GK V ++I +  +     
Sbjct: 272 NGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQ 331

Query: 149 LCNALIDMFAKCGDVDKAL---------------------------------KLFRSMNG 175
           + NALI M+AK G V+ A                                  ++F  M+ 
Sbjct: 332 VTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSN 391

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS----------- 224
           R +V+WT++I G   +G   EA+ LF  M+ +G  P+      +LS C+           
Sbjct: 392 RDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQI 451

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           HC  +   +E   S+ N             +V M  RSG +  A     ++      + W
Sbjct: 452 HCKAIRSLQEQSSSVSNS------------IVTMYARSGSLPWARRVFDRVHWRKETVTW 499

Query: 285 RTLISACCARG 295
            ++I A    G
Sbjct: 500 TSMIVALAQHG 510



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 146/294 (49%), Gaps = 37/294 (12%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   N+L+ +Y    G +   R VF EM ERD VSW+ M+ G  R+G   +AI +F  M
Sbjct: 95  NVFTWNSLLSLYAK-SGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDM 153

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD- 162
              G+ P + T+  VLS+C    A  VG+ V SF+ K  ++  V + N++++M+ KCGD 
Sbjct: 154 VTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDA 213

Query: 163 ------------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
                                         +D AL LF +M  RTIVSW +VIAG   +G
Sbjct: 214 ETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNG 273

Query: 193 RGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIE 250
              +A+  F  ML  + + PD+     +LSAC++ G+V  G++     +++    I ++ 
Sbjct: 274 LNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT 333

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPI-EANPIIWRTLISACCARGELKLAESI 303
           +   ++ M  +SG V+ A   +Q+  + + N I +  L+      G++K A  +
Sbjct: 334 N--ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           F E     R+V   N+L+ ++AK G +  A  +F  M  R  VSWT ++ GL   GR  E
Sbjct: 86  FDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGE 145

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+ +F +M+  G+ P       +LS+C+       GR+   S     G+   +     ++
Sbjct: 146 AIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRK-VHSFVVKLGLSSCVPVANSVL 204

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +M  + G  + A    ++MP E +   W  ++S     G + LA S+ + +
Sbjct: 205 NMYGKCGDAETARAVFERMP-ERSVSSWNAMVSLDAHLGRMDLALSLFENM 254


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + PN F++  VLKAC  + D   G+ V+   +K        V N+L+ MY    G
Sbjct: 152 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-SG 210

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD + E++ VS++A++ GYA+   S +A  LF ++  +G+     T  ++LS
Sbjct: 211 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +GA+  G+ +   + K     +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 271 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 330

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG    A+ +F +MLE G  P+++ +V +LSACSH G++ +G+++F+SM 
Sbjct: 331 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 390

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + GI+P++EHY CMVD+L RSG + EA EFI  MP+ A+ ++WRTL+ AC   G  +L 
Sbjct: 391 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 450

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP   + Y+LLS+++A   +W+   KIR+ M +R + K  G + IE++N 
Sbjct: 451 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 510

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G+ SH Q+ +IY+ LD++  K+K+ GY+P T  VL DI EE KE  L +HSEK+
Sbjct: 511 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 570

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIRI KNLRVC DCH+A K+IS    REIVVRD +RFHH K+
Sbjct: 571 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 625



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 8/320 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--EGGI 62
           G  P++FTY  VL AC  +G L LGK +H  V++     D+ V  +LV MY  C  +G +
Sbjct: 51  GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 110

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  RKVF++M E + +SW+A+I  YA+ G    +AI+LF +M    + P+  +  +VL A
Sbjct: 111 DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 170

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L     G+ V S+  K  +     + N+LI M+A+ G ++ A K F  +  + +VS+
Sbjct: 171 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 230

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            +++ G A + +  EA  LF E+ + G+      F  LLS  +  G + KG +    +  
Sbjct: 231 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 290

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             G          ++ M  R G ++ A +   +M  + N I W ++I+     G    A 
Sbjct: 291 G-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 348

Query: 302 SITKRLI--GNEPMHESNYV 319
            +  +++  G +P +E  YV
Sbjct: 349 EMFHKMLETGTKP-NEITYV 367



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFD+M ER+ V+W+ MI  +A+LG + DAIDLF  M++SG  PD  T  +VLSACT+LG
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGRTIVSWTS 183
            L +GK + S + +  +   V +  +L+DM+AKC   G VD + K+F  M    ++SWT+
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 184 VIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I   A  G    EA+ LF +M+   + P+  +F  +L AC +      G + + S    
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-SYAVK 189

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHE----FIQKMPIEANPII 283
            GI         ++ M  RSGR+++A +      +K  +  N I+
Sbjct: 190 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 234



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           A K+F  M  R +V+WT +I   A  G   +A+ LF +M  +G  PD   +  +LSAC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGC-MVDMLCR---SGRVKEAHEFIQKMPIEANP 281
            GL+  G++   S     G+   +   GC +VDM  +    G V ++ +  ++MP E N 
Sbjct: 69  LGLLALGKQ-LHSRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 125

Query: 282 IIWRTLISACCARGE 296
           + W  +I+A    GE
Sbjct: 126 MSWTAIITAYAQSGE 140


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/459 (41%), Positives = 302/459 (65%), Gaps = 2/459 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L ACA +  +  GK +HG  ++   G+ +    N+L+ MY +C   ++  R++F+ +  
Sbjct: 268 LLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVD-ARRLFERVRW 326

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +D+VSW++MI GYAR G + +++ LFR+M + G  PD++T + VL AC  + AL  G  +
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSI 386

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            S++ K+  + +  +  AL+DM++KCG +  + ++F  M  +++VSW++++AG  +HGRG
Sbjct: 387 HSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRG 446

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA+++ + M    V PD+  F  +LSACSH GLV +G+E F  M+ ++ + P + HY C
Sbjct: 447 REAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSC 506

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           MVD+L R+G + EA+  I+ M I+    IW  L++A      +KLAE   +++    P  
Sbjct: 507 MVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKV 566

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
            S+Y+ LS+IYA   RW+   ++R ++ ++G+KK PG + IELDN ++ F+ GDKSH Q+
Sbjct: 567 VSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQT 626

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           ++IY  L+E+ +++K+AGY P TS V  D+ EE KE  L  HSE+LAIAFAL+ T PGT 
Sbjct: 627 EDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTV 686

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           IRI KNLRVC DCH+ TK IS++  REI++RD HRFHHF
Sbjct: 687 IRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHF 725



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 10/315 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G   + FTYPFVLKAC  +  + +G+ VH  V+      DI+V N+L+ MY    G
Sbjct: 152 MLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKF-G 210

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFD M+ERD  SW+ MI GYA+   S  A  +F  M  +G+  D  T++ +LS
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLS 270

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC DL A++ GK +  + +   + N +    N+LI+M+  C  +  A +LF  +  +  V
Sbjct: 271 ACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTV 330

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYF 236
           SW S+I G A +G   E++ LF  M   G  PD V F+ +L AC     +  G     Y 
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                D   I        +VDM  + G +  +     +MP + + + W  +++     G 
Sbjct: 391 VKKGFDANTIVGT----ALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAGYGLHGR 445

Query: 297 LKLAESITKRLIGNE 311
            + A SI   +  N 
Sbjct: 446 GREAISILDGMKANS 460



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 5/283 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L++         G+ +H  ++ F    ++ ++   L   Y  C G +     +FD +  
Sbjct: 65  LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGC-GLMSQAEVIFDGIVL 123

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           ++S  W+ MI GYA  GL   ++ L+R+M   G   D  T   VL AC DL  +E+G+ V
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            S +    +   + + N+L+ M+AK GD+  A  +F  M  R + SW ++I+G A +   
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYG 253
             A  +F+ M +AG+  D    +GLLSAC+    V +G+     +++N  G   K     
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKF-FTN 302

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +++M C    + +A    +++  + + + W ++I      G+
Sbjct: 303 SLIEMYCNCNCMVDARRLFERVRWK-DTVSWNSMILGYARNGD 344


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/462 (43%), Positives = 306/462 (66%), Gaps = 2/462 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           V+ AC+ +    L +S+H  V+K  F   + V NTL+  Y    EGG+ + RK+FD++ +
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKW 133
           +D VS+++++  YA+ G+S +A ++FR++  + V   + IT+ TVL A +  GAL +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + +  +   V +  ++IDM+ KCG V+ A K F  M  + + SWT++IAG  MHG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A+ LF  M+++GV P+ + FV +L+ACSH GL  +G  +F++MK  FG+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           CMVD+L R+G +++A++ IQ+M ++ + IIW +L++AC     ++LAE    RL   +  
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488

Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
           +   Y+LLSHIYA   RW+   ++R +M  RG+ K PG +L+EL+ E++ F+ GD+ H Q
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 374 SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT 433
            ++IYE L E+ RK+ +AGYV  TS V  D++EE+KE  L  HSEKLAIAF ++ T PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608

Query: 434 PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + +VKNLRVC+DCH+  K ISKI +RE VVRD  RFHHFKD
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 169/337 (50%), Gaps = 18/337 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P + ++P  +KAC+ + D+  GK  H     F +  DI V + L+ MY +C G
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTC-G 125

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPDEIT 114
            +E  RKVFDE+ +R+ VSW++MI GY   G + DA+ LF+ + +        +  D + 
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--VDKALKLFRS 172
           +V+V+SAC+ + A  + + + SF+ K+  +R V + N L+D +AK G+  V  A K+F  
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDK 231
           +  +  VS+ S+++  A  G   EA  +F  +++  V   + +    +L A SH G +  
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+   D +    G+   +     ++DM C+ GRV+ A +   +M    N   W  +I+  
Sbjct: 306 GKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGY 363

Query: 292 CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
              G    A  +   +I  G  P    NY+    + A
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRP----NYITFVSVLA 396



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 42/275 (15%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D  SW+++I   AR G S +A+  F  M+   + P   +    + AC+ L  +  GK   
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
                      + + +ALI M++ CG ++ A K+F  +  R IVSWTS+I G  ++G  L
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 196 EAVALFEEMLEAGVPPDDVAF------VGLLSACS-----------HCGLVDKGREYFDS 238
           +AV+LF+++L      DD  F      V ++SACS           H  ++ +G +   S
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 239 MKNDF------------GIIPKI---------EHYGCMVDMLCRSGRVKEAHEFIQKM-- 275
           + N               +  KI           Y  ++ +  +SG   EA E  +++  
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 276 --PIEANPIIWRTLISACCARGELKLAESITKRLI 308
              +  N I   T++ A    G L++ + I  ++I
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI 314



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
           R ++   + SW SVIA LA  G   EA+  F  M +  + P   +F   + ACS    + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIF 93

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G++        FG    I     ++ M    G++++A +   ++P + N + W ++I  
Sbjct: 94  SGKQT-HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRG 151

Query: 291 CCARGELKLAESITKRLIGNE 311
               G    A S+ K L+ +E
Sbjct: 152 YDLNGNALDAVSLFKDLLVDE 172


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 299/506 (59%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN  T   +L AC  + DL  G+ VHG V++   G ++ V + LV+MY SC   I  
Sbjct: 174 GERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLS-IRQ 232

Query: 65  GRKVFDEMSERDSVSWS-----------------------------------AMIGGYAR 89
            + VFD MS RD+VSW+                                   A+IGG  +
Sbjct: 233 AQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQ 292

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G +  A+++  +MQ SG  P++IT+ +VL ACT+L +L  GK +  +I +    + +  
Sbjct: 293 NGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTT 352

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+ M+AKCGD++ + ++F  M  R  VSW ++I   +MHG G EA+ LF EM+++GV
Sbjct: 353 TTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGV 412

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F G+LS CSH  LVD+G   FDSM  D  + P  +H+ CMVD+L R+GR++EA+
Sbjct: 413 RPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAY 472

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFI+KMPIE     W  L+  C     ++L      RL   E  +  NYVLLS+I     
Sbjct: 473 EFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAK 532

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W + ++ R++M  RG+ K PG + I++ N ++ FV GDKS+ QS EIY  LD MG KM+
Sbjct: 533 LWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMR 592

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AGY+P T  VL D+++E+KE+ L  HSEKLA+AF +L     + IR+ KNLR+C DCH+
Sbjct: 593 IAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHN 652

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A KF++KI   +I+VRD  RFHHF+D
Sbjct: 653 AIKFMAKIVGVKIIVRDSLRFHHFRD 678



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 1/236 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+K     V KACA + D+   K VH   ++F F  D+ + N L+ MYG C    E  
Sbjct: 74  VEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS-EGA 132

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VF+ M  RD +SW++M   Y   GL  +A+  FR+M ++G  P+ +T+ ++L ACTDL
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L+ G+ V  F+ +  +  +V + +AL++M+A C  + +A  +F SM+ R  VSW  +I
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLI 252

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
               ++    + +++F  M+  GV  +  ++  ++  C   G  +K  E    M+N
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN+ T   VL AC  +  L  GK +HG + +  F  D+     LV MY  C G
Sbjct: 306 MQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKC-G 364

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +EL R+VF  M++RD+VSW+ MI   +  G   +A+ LFR+M  SGV P+ +T   VLS
Sbjct: 365 DLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLS 424

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
            C+    ++ G  + +S      V       + ++D+ ++ G +++A +  + M    T 
Sbjct: 425 GCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTA 484

Query: 179 VSWTSVIAGLAMH-----GRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
            +W +++ G  ++     GR + A  LFE  +E+  P + V    +L
Sbjct: 485 GAWGALLGGCRVYKNVELGR-IAANRLFE--IESDNPGNYVLLSNIL 528



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 4/264 (1%)

Query: 46  HVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
           H+    + +Y S  G ++  R +FD++ + D  +W+ +I    + G S +AI  +   + 
Sbjct: 12  HLALKFIKVY-SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRH 70

Query: 106 SG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
              V PD++ +++V  AC  L  +   K V     +      V L NALIDM+ KC   +
Sbjct: 71  KNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSE 130

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F  M  R ++SWTS+ +     G   EA+  F +M   G  P+ V    +L AC+
Sbjct: 131 GARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
               +  GRE    +  + G+   +     +V+M      +++A      M    + + W
Sbjct: 191 DLKDLKSGREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS-RRDTVSW 248

Query: 285 RTLISACCARGELKLAESITKRLI 308
             LI+A     E +   S+  R++
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMM 272


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/462 (43%), Positives = 306/462 (66%), Gaps = 2/462 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           V+ AC+ +    L +S+H  V+K  F   + V NTL+  Y    EGG+ + RK+FD++ +
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKW 133
           +D VS+++++  YA+ G+S +A ++FR++  + V   + IT+ TVL A +  GAL +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + +  +   V +  ++IDM+ KCG V+ A K F  M  + + SWT++IAG  MHG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A+ LF  M+++GV P+ + FV +L+ACSH GL  +G  +F++MK  FG+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           CMVD+L R+G +++A++ IQ+M ++ + IIW +L++AC     ++LAE    RL   +  
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488

Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
           +   Y+LLSHIYA   RW+   ++R +M  RG+ K PG +L+EL+ E++ F+ GD+ H Q
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 374 SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT 433
            ++IYE L E+ RK+ +AGYV  TS V  D++EE+KE  L  HSEKLAIAF ++ T PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608

Query: 434 PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + +VKNLRVC+DCH+  K ISKI +RE VVRD  RFHHFKD
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 169/337 (50%), Gaps = 18/337 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P + ++P  +KAC+ + D+  GK  H     F +  DI V + L+ MY +C G
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTC-G 125

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPDEIT 114
            +E  RKVFDE+ +RD VSW++MI GY   G + DA+ LF+ + +        +  D + 
Sbjct: 126 KLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--VDKALKLFRS 172
           +V+V+SAC+ + A  + + + SF+ K+  +R V + N L+D +AK G+  V  A K+F  
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDK 231
           +  +  VS+ S+++  A  G   EA  +F  +++  V   + +    +L A SH G +  
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+   D +    G+   +     ++DM C+ GRV+ A +   +M    N   W  +I+  
Sbjct: 306 GKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGY 363

Query: 292 CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
              G    A  +   +I  G  P    NY+    + A
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRP----NYITFVSVLA 396



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 42/275 (15%)

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D  SW+++I   AR G S +A+  F  M+   + P   +    + AC+ L  +  GK   
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
                      + + +ALI M++ CG ++ A K+F  +  R IVSWTS+I G  ++G  L
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 196 EAVALFEEMLEAGVPPDDVAF------VGLLSACS-----------HCGLVDKGREYFDS 238
           +AV+LF+++L      DD  F      V ++SACS           H  ++ +G +   S
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 239 MKNDF------------GIIPKI---------EHYGCMVDMLCRSGRVKEAHEFIQKM-- 275
           + N               +  KI           Y  ++ +  +SG   EA E  +++  
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 276 --PIEANPIIWRTLISACCARGELKLAESITKRLI 308
              +  N I   T++ A    G L++ + I  ++I
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI 314



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
           R ++   + SW SVIA LA  G   EA+  F  M +  + P   +F   + ACS    + 
Sbjct: 34  RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIF 93

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G++        FG    I     ++ M    G++++A +   ++P + + + W ++I  
Sbjct: 94  SGKQT-HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSMIRG 151

Query: 291 CCARGELKLAESITKRLIGNE 311
               G    A S+ K L+ +E
Sbjct: 152 YDLNGNALDAVSLFKDLLVDE 172


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/478 (43%), Positives = 299/478 (62%), Gaps = 9/478 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N  T   ++ AC    +L LG S+H + LK+ F  D+ V N  + MY  C G
Sbjct: 134 MNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKC-G 192

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +K+FDEM  +  +SW+AM+ GYA+ GL+T+ ++L+R M ++GV PD +T+V VLS
Sbjct: 193 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLS 252

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +LGA  VG  VE  ++      +  L NALI+M+A+CG++ KA  +F  M  RT+VS
Sbjct: 253 SCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS 312

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G  MHG G  AV LF+EM+ +G+ PD  AFV +LSACSH GL D+G EYF  MK
Sbjct: 313 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK 372

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P  EHY CMVD+L R+GR+KEA   I+ MPI+ +  +W  L+ AC     ++LA
Sbjct: 373 RNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELA 432

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +R+I  EP +   YVLLS+IY+     +   +IR +M ++ +KK PG + +EL   
Sbjct: 433 ELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGR 492

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK---HS 417
           ++ F+ GD++H QS EIY +L+E+   + +    P       D  EE  +D   +   HS
Sbjct: 493 VHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK-----DNREESNKDGFTRVGVHS 547

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLA+AF LL T  G  + I+KNLR+C DCH   K +SKI +R++ VRD  RFHHF++
Sbjct: 548 EKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 605



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 11/318 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G  PN FT+PF LK+CA +    LG   HG + K     +  VQ  L+ MY  C+G
Sbjct: 31  MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMY--CKG 88

Query: 61  G-IELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             ++  RKVF+E   S + +V ++A++ GY      +DA+ LFRQM   GV  + +T++ 
Sbjct: 89  SLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLG 148

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           ++ AC     LE+G  +     K   +  V + N  I M+ KCG V+ A KLF  M  + 
Sbjct: 149 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 208

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-F 236
           ++SW ++++G A +G     + L+  M   GV PD V  VG+LS+C++ G    G E  F
Sbjct: 209 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEF 268

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
               + F   P + +   +++M  R G + +A      MP E   + W  +I      G 
Sbjct: 269 KMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGH 325

Query: 297 LKLAESITKRLI--GNEP 312
            ++A  + K +I  G EP
Sbjct: 326 GEIAVQLFKEMIRSGIEP 343


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 299/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   + PN F++  VLKAC  + D   G+ V+   +K        V N+L+ MY    G
Sbjct: 345 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-SG 403

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD + E++ VS++A++ GYA+   S +A  LF ++  +G+     T  ++LS
Sbjct: 404 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 463

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +GA+  G+ +   + K     +  +CNALI M+++CG+++ A ++F  M  R ++S
Sbjct: 464 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 523

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I G A HG    A+ +F +MLE G  P+++ +V +LSACSH G++ +G+++F+SM 
Sbjct: 524 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 583

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + GI+P++EHY CMVD+L RSG + EA EFI  MP+ A+ ++WRTL+ AC   G  +L 
Sbjct: 584 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 643

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP   + Y+LLS+++A   +W+   KIR+ M +R + K  G + IE++N 
Sbjct: 644 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 703

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G+ SH Q+ +IY+ LD++  K+K+ GY+P T  VL DI EE KE  L +HSEK+
Sbjct: 704 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 763

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIRI KNLRVC DCH+A K+IS    REIVVRD +RFHH K+
Sbjct: 764 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 818



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 159/292 (54%), Gaps = 10/292 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           MLE G  PN++ +  V++AC+      +G+ ++G V+K  + + D+ V   L+ M+    
Sbjct: 137 MLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGS 196

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    KVFD+M ER+ V+W+ MI  +A+LG + DAIDLF  M++SG  PD  T  +VL
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 256

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGR 176
           SACT+LG L +GK + S + +  +   V +  +L+DM+AKC   G VD + K+F  M   
Sbjct: 257 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 316

Query: 177 TIVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
            ++SWT++I      G    EA+ LF +M+   + P+  +F  +L AC +      G + 
Sbjct: 317 NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 376

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE----FIQKMPIEANPII 283
           + S     GI         ++ M  RSGR+++A +      +K  +  N I+
Sbjct: 377 Y-SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 427



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--EGGI 62
           G  P++FTY  VL AC  +G L LGK +H  V++     D+ V  +LV MY  C  +G +
Sbjct: 244 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 303

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  RKVF++M E + +SW+A+I  Y + G    +AI+LF +M    + P+  +  +VL A
Sbjct: 304 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 363

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L     G+ V S+  K  +     + N+LI M+A+ G ++ A K F  +  + +VS+
Sbjct: 364 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 423

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            +++ G A + +  EA  LF E+ + G+      F  LLS  +  G + KG +    +  
Sbjct: 424 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 483

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             G          ++ M  R G ++ A +   +M  + N I W ++I+     G    A 
Sbjct: 484 G-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 541

Query: 302 SITKRLI--GNEPMHESNYV 319
            +  +++  G +P +E  YV
Sbjct: 542 EMFHKMLETGTKP-NEITYV 560



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 11/303 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +    P+  TY  +LK+C    +  LGK VH  +++     D  V NTL+ +Y  C G
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKC-G 93

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             E  R +F+ M ++RD VSWSAM+  +A   +   AI  F  M   G  P+E     V+
Sbjct: 94  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 153

Query: 120 SACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAK-CGDVDKALKLFRSMNGRT 177
            AC++     VG+ +  F+ K   +   V +   LIDMF K  GD+  A K+F  M  R 
Sbjct: 154 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERN 213

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+WT +I   A  G   +A+ LF +M  +G  PD   +  +LSAC+  GL+  G++   
Sbjct: 214 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ-LH 272

Query: 238 SMKNDFGIIPKIEHYGC-MVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           S     G+   +   GC +VDM  +    G V ++ +  ++MP E N + W  +I+A   
Sbjct: 273 SRVIRLGLALDV-CVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQ 330

Query: 294 RGE 296
            GE
Sbjct: 331 SGE 333


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 308/505 (60%), Gaps = 30/505 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML+ G  P+K T    + ACA +GDL++GKS H  V +       ++ N ++ MY  C  
Sbjct: 315 MLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGK 374

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G +EL  ++F EM E + VSW+ MIG   + 
Sbjct: 375 REAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQA 434

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            +  +AIDL R+MQ  G+  D +TMV + SAC  LGAL++ KW+ ++IEK  ++  + L 
Sbjct: 435 SMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLG 494

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DMF++CGD   A+++F +M  R + +WT+ I   A+ G    A+ LF+EML+  V 
Sbjct: 495 TALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVK 554

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            DD  FV LL+A SH G VD+GR+ F +M+   G+ P+I HYGCMVD+L R+G ++EA +
Sbjct: 555 ADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFD 614

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ MPI+ N +IW + ++AC     ++ A    +++    P     +VLLS+IYA   +
Sbjct: 615 LMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGK 674

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R  M ++G +K+ GS+ IE+   I EF  GD+SH ++ +I  ML E+  ++ +
Sbjct: 675 WNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQ 734

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GYVP T+ VL+D++E++KE  L++HSEKLA+A+ L+ T  G PIR+VKNLR+C+DCHS 
Sbjct: 735 VGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSF 794

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K +SK+Y REI VRD +R+H FK+
Sbjct: 795 AKLVSKLYGREITVRDNNRYHFFKE 819



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 193/347 (55%), Gaps = 14/347 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT+PF+L AC+ I   + G  VHG V+K     D+ V N+L+H Y +C G ++L
Sbjct: 117 GIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAAC-GKVDL 175

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GRKVFDEM ER+ VSW+++I GY+ + ++ +A+ LF +M   GV P+ +TMV  +SAC  
Sbjct: 176 GRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAK 235

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  LE+GK V + + +  V  +  + NAL+DM+ KCGD+    ++F   + + +V + ++
Sbjct: 236 LKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTI 295

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-EYFDSMKNDF 243
           ++    HG   E + + +EML+ G  PD V  +  ++AC+  G +  G+  +    +N  
Sbjct: 296 MSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGL 355

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
             +  I +   ++DM  + G+ + A +    M      + W +LI+     GEL+LA   
Sbjct: 356 ERLDNISN--AIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELA--- 409

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLR---WEKKTKIREVMDKRGMK 347
             R+ G  P  ESN V  + +   +++   +E+   +   M  +G+K
Sbjct: 410 -LRIFGEMP--ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 165/341 (48%), Gaps = 38/341 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV PN  T    + ACA + DL LGK V   + +     +  V N L+ MY  C G
Sbjct: 214 MVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKC-G 272

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R++FDE S+++ V ++ ++  Y + GL+ + + +  +M   G  PD++TM++ ++
Sbjct: 273 DMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIA 332

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG L VGK   +++ +  + R   + NA+IDM+ KCG  + A K+F SM+ +T+V+
Sbjct: 333 ACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVT 392

Query: 181 WTSVIAGLAMHGR-------------------------------GLEAVALFEEMLEAGV 209
           W S+IAGL   G                                  EA+ L  EM   G+
Sbjct: 393 WNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGI 452

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVDMLCRSG---RV 265
             D V  VG+ SAC + G +D  +  +  + KND  I   ++    +VDM  R G     
Sbjct: 453 KGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHI--DMQLGTALVDMFSRCGDPLNA 510

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
               E ++K  + A     R       A+G ++L + + K+
Sbjct: 511 MRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQ 551



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGAL 128
           DE ++    + + +I GYA  GL  +AI ++  M I  G+ PD  T   +LSAC+ + A 
Sbjct: 79  DEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAF 138

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G  V   + K  + + + + N+LI  +A CG VD   K+F  M  R +VSWTS+I G 
Sbjct: 139 SEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGY 198

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           ++     EAV LF EM+E GV P+ V  V  +SAC+    ++ G++  + M  + G+   
Sbjct: 199 SVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLM-TELGVKSN 257

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                 ++DM  + G +    E   +   + N +++ T++S     G
Sbjct: 258 TLVVNALLDMYMKCGDMYAVREIFDEFS-DKNLVMYNTIMSNYVQHG 303


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/507 (40%), Positives = 304/507 (59%), Gaps = 35/507 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  + P+ FT   +L ACA +  LN+GK +H  +L+ +      V N L+ MY    GG+
Sbjct: 268 EPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK-SGGV 326

Query: 63  ELGR---------------------------------KVFDEMSERDSVSWSAMIGGYAR 89
           E+ R                                 ++F+++ +RD V+W+AMI GY +
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            GL  DA++LFR M   G  P+  T+  +LS  + L  LE GK + +   K   + +  +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
            NALI M+AK G+++ A ++F   NG+  IVSWTS+I  LA HG G EA+ LFE ML  G
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD + +VG+LSAC+H GLV++GR+Y++ M     I P + HY CM+D+  R+G ++EA
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           + FI+ MPIE + I W +L+++C       LA+   +RL+  +P +   Y+ L+++Y+  
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            +WE   + R++M  RG++K  G + I + NE++ F   D  H Q  EIY+++ E+  ++
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK G++P T  VL D+ EE KE  L  HSEKLAIAF LL TP  T +RI+KNLRVCNDCH
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCH 746

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           SA KFISK+  REI+VRD  RFHHFKD
Sbjct: 747 SAIKFISKLVGREIIVRDATRFHHFKD 773



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 69/389 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+   V P++FT   VL +CA    L++G+ +H  V+K   G  + V  +L++MY  C  
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G  EL    F++M +RD VSW++MI GY++ 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G + +A+ +F +M     + PD  T+ ++LSAC +L  L +GK + ++I +     S  +
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI M+AK                                  G+V  A ++F  +  R
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
            +V+WT++I G   +G   +A+ LF  M+  G  P+      +LS  S   +++ G++ +
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++K      P + +   ++ M  ++G +  A         +   + W ++I A    G
Sbjct: 433 ASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 296 ELKLAESITKRL--IGNEPMHESNYVLLS 322
             K A ++ +R+  +G +P H +   +LS
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 163/374 (43%), Gaps = 73/374 (19%)

Query: 2   LEYGVSPNKFTY-PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           +E G SP    +   +L+    I D   G+SVH  ++K      +++ N L+  Y     
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G  E+ R++  EM + D VSW+A+I GY + 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           GL  +AI +F +M    V P + T+  VLS+C     L++G+ + SF+ K  +   V + 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 151 NALIDMFAKCGD-------------------------------VDKALKLFRSMNGRTIV 179
            +L++M+AKCGD                                + A   F  M  R IV
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           SW S+I+G +  G  LEA+A+F +ML E  + PD+     +LSAC++   ++ G++    
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI--- 297

Query: 239 MKNDFGIIPKIEHYG----CMVDMLCRSGRVKEAHEFIQ-KMPIEANPIIWRTLISACCA 293
             + + +  + E  G     ++ M  +SG V+ A   ++       N I + +L+     
Sbjct: 298 --HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 294 RGELKLAESITKRL 307
            G +K A  I  +L
Sbjct: 356 LGNVKPAREIFNKL 369



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   +L   + +  L  GK +H + +K        V N L+ MY    G
Sbjct: 400 MVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT-G 458

Query: 61  GIELGRKVFD-EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I + ++VFD    +++ VSW++MI   A+ GL  +AI+LF +M   G+ PD IT V VL
Sbjct: 459 NINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVL 518

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SACT +G +E G K+     E   +  ++     +ID++ + G + +A     SM     
Sbjct: 519 SACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPD 578

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            ++W S++A   +H     A    E +L    P +  A++ L +  S CG  +   +   
Sbjct: 579 NIAWGSLLASCKIHKNADLAKVAAERLLLID-PGNSGAYLALANVYSACGKWENAAQTRK 637

Query: 238 SMKN 241
            MK+
Sbjct: 638 LMKD 641


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/506 (39%), Positives = 302/506 (59%), Gaps = 33/506 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE 59
           E  ++P++FT   VL ACA +G++ +GK VH  +L+ +   +  V N L+  Y   GS E
Sbjct: 184 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 243

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E  R++F  M+ RD V+W+AMI GY + 
Sbjct: 244 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 303

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G + +AIDLFR M   G  P+  T+  VLS C  L  L+ GK +     + ++ +S  + 
Sbjct: 304 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVS 363

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           NA+I M+A+ G    A ++F  +  R   ++WTS+I  LA HG+G EAV LFEEML AGV
Sbjct: 364 NAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGV 423

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD + +VG+LSACSH G V++G+ Y+D +KN+  I P++ HY CMVD+L R+G   EA 
Sbjct: 424 EPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 483

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFI++MP+E + I W +L+SAC      +LAE   ++L+  +P +   Y  ++++Y+   
Sbjct: 484 EFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 543

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    +I +   ++ ++K  G +   + ++I+ F   D  H Q   +Y M   M  ++K
Sbjct: 544 RWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 603

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AG+VP    VL D+++E KE+ L++HSEKLAIAF L+ TP  T +R++KNLRVCNDCH+
Sbjct: 604 GAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHA 663

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K ISK+ +REI+VRD  RFHHF+D
Sbjct: 664 AIKAISKVTDREIIVRDATRFHHFRD 689



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 69/379 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M   G +P +FT   VL +CA      +G+ VH  V+K   G  + V N++++MYG C  
Sbjct: 49  MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD 108

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L   +F+ M +R  VSW+AMI GY + 
Sbjct: 109 SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQN 168

Query: 91  GLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           GL   A+ LF R +  S + PDE T+ +VLSAC +LG + +GK V ++I +  +  +  +
Sbjct: 169 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 228

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI  +AK                                  GD++ A ++F  MN R
Sbjct: 229 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 288

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
            +V+WT++I G   +GR  EA+ LF  M+  G  P+      +LS C+    +D G++ +
Sbjct: 289 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 348

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++++       + +   ++ M  RSG    A     ++      I W ++I A    G
Sbjct: 349 CRAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 406

Query: 296 ELKLAESITKRLI--GNEP 312
           + + A  + + ++  G EP
Sbjct: 407 QGEEAVGLFEEMLRAGVEP 425



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 36/278 (12%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R VF EM ERD+VSW+ M+ G  R G   +AI     M   G  P + T+  VL
Sbjct: 6   GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVL 65

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------------- 162
           S+C    A  VG+ V SF+ K  +   V + N++++M+ KCGD                 
Sbjct: 66  SSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVS 125

Query: 163 --------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EA 207
                         +D A  LF SM  R+IVSW ++IAG   +G   +A+ LF  ML E+
Sbjct: 126 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 185

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            + PD+     +LSAC++ G V  G++     ++ +     ++ +   ++    +SG V+
Sbjct: 186 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVE 243

Query: 267 EAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESI 303
            A   + Q M  + N I +  L+      G+++ A  +
Sbjct: 244 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 281



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   VL  CA +  L+ GK +H   ++        V N ++ MY    G
Sbjct: 316 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYAR-SG 374

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                R++FD++  R ++++W++MI   A+ G   +A+ LF +M  +GV PD IT V VL
Sbjct: 375 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 434

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SAC+  G +  GK + +    +  +   +     ++D+ A+ G   +A +  R M     
Sbjct: 435 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 494

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            ++W S+++   +H +  E   L  E L +  P +  A+  + +  S CG
Sbjct: 495 AIAWGSLLSACRVH-KNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 543



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 2/148 (1%)

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           MFAK G +  A  +F  M  R  VSWT ++ GL   GR  EA+    +M   G  P    
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
              +LS+C+       GR+   S     G+   +     +++M  + G  + A    ++M
Sbjct: 61  LTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 276 PIEANPIIWRTLISACCARGELKLAESI 303
           P+ +    W  ++S     G + LAES+
Sbjct: 120 PVRSVS-SWNAMVSLNTHLGRMDLAESL 146


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/487 (41%), Positives = 302/487 (62%), Gaps = 13/487 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVH 53
           ML  G+ PN+ T   VL  CA +G L  GK +H   +K+         GD+  V N L+ 
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 54  MYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVC 109
           MY  C+  +++ R +FD +S  ERD V+W+ MIGGY++ G +  A++L  +M  +     
Sbjct: 416 MYAKCKK-VDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALK 168
           P+  T+   L AC  L AL +GK + ++  +   N   + + N LIDM+AKCGD+  A  
Sbjct: 475 PNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARL 534

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  +  V+WTS++ G  MHG G EA+ +FEEM   G   D V  + +L ACSH G+
Sbjct: 535 VFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +D+G EYF+ MK DFG+ P  EHY C+VD+L R+GR+  A   I++MP+E  P++W  L+
Sbjct: 595 IDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALL 654

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           S C   G+++L E   K++      ++ +Y LLS++YA   RW+  T+IR +M  +G+KK
Sbjct: 655 SCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKK 714

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
            PG + +E       F  GDK+H  +KEIY++L +  +++K  GYVP T   L D+++E+
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEE 774

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           K+D L +HSEKLA+A+ +L TP G  IRI KNLRVC DCH+A  ++S+I + EI++RD  
Sbjct: 775 KDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSS 834

Query: 469 RFHHFKD 475
           RFHHFK+
Sbjct: 835 RFHHFKN 841



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 160/339 (47%), Gaps = 48/339 (14%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P+ +T+PFV KAC  I  +  G S H       F  ++ V N LV MY  C G +   R
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRC-GSLSDAR 182

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDL 125
           KVFDEM   D VSW+++I  YA+LG    A+++F +M    G  PD+IT+V VL  C  +
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASV 242

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   +GK    F     + +++ + N L+DM+AK G +D+A  +F +M  + +VSW +++
Sbjct: 243 GTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMV 302

Query: 186 AGLAMHGRGLEAVALFE-----------------------------------EMLEAGVP 210
           AG +  GR  +AV LFE                                   +ML +G+ 
Sbjct: 303 AGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362

Query: 211 PDDVAFVGLLSACSHCGLVDKGREY--------FDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           P++V  + +LS C+  G +  G+E          D  KN  G    + +   ++DM  + 
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQ--LIDMYAKC 420

Query: 263 GRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLA 300
            +V  A      + P E + + W  +I      G+   A
Sbjct: 421 KKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 159/335 (47%), Gaps = 50/335 (14%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E+G  P+  T   VL  CA +G  +LGK  HG  +  +   ++ V N LV MY    G +
Sbjct: 222 EFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKF-GMM 280

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ------------------ 104
           +    VF  M  +D VSW+AM+ GY+++G   DA+ LF QMQ                  
Sbjct: 281 DEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGY 340

Query: 105 -----------------ISGVCPDEITMVTVLSACTDLGALEVGKWVESF-IEKQMVNRS 146
                             SG+ P+E+T+++VLS C  +GAL  GK +  + I+  M  R 
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRK 400

Query: 147 VG------LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAV 198
            G      + N LIDM+AKC  VD A  +F S++   R +V+WT +I G + HG   +A+
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 199 ALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCM 255
            L  EM E      P+       L AC+    +  G++ +  +++N    +P      C+
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCL 519

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +DM  + G + +A      M +E N + W +L++ 
Sbjct: 520 IDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTG 553



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 13/308 (4%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCEG 60
           +  S  + T PF+ K C  I  + L   +H  +L F     +++ + L+  Y   G    
Sbjct: 23  FSTSALEITPPFIHK-CKTISQVKL---IHQKLLSFGI-LTLNLTSHLISTYISLGCLSH 77

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L R+     S+     W+++I  Y   G +   +  F  M      PD  T   V  
Sbjct: 78  AVSLLRRF--PPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFK 135

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC ++ ++  G    +         +V + NAL+ M+++CG +  A K+F  M    +VS
Sbjct: 136 ACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVS 195

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W S+I   A  G+   A+ +F +M  E G  PDD+  V +L  C+  G    G++ F   
Sbjct: 196 WNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQ-FHGF 254

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                +I  +    C+VDM  + G + EA+     MP++ + + W  +++     G  + 
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMVAGYSQIGRFED 313

Query: 300 AESITKRL 307
           A  + +++
Sbjct: 314 AVRLFEQM 321


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/472 (43%), Positives = 293/472 (62%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            ++P+  T   V+ ACA + DL+ G  +HG ++K  F  D HV+N L+ MY  C G +  
Sbjct: 526 AINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKC-GSLPS 584

Query: 65  GRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              +F++    +D V+W+ +I  Y + G + +AI  F QM++    P+ +T V+VL A  
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L A   G    + I +     +  + N+LIDM+AKCG +D + KLF  M+ +  VSW +
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNA 704

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +++G A+HG G  A+ALF  M E+ V  D V+FV +LSAC H GLV++GR+ F SM + +
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKY 764

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            I P +EHY CMVD+L R+G   E   FI+ MP+E +  +W  L+ +C     +KL E  
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
              L+  EP + +++V+LS IYA+  RW    K R  M+  G+KK PG + +EL N+++ 
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 884

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GDKSH Q + ++ + + +  KM+K GYVP  S VL ++ EEDKE  L  HSE+LAI 
Sbjct: 885 FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 944

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           FALL TPPG+ I+IVKNLRVC DCH+ TKFISKI  R I+VRD  RFHHF+D
Sbjct: 945 FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFED 996



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    + PN+ T   +L ACA +  L LGKS+H   +K     D+     LV MY  C G
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC-G 479

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                   F+ MS RD V+W+++I GYA++G   +AID+F ++++S + PD  TMV V+ 
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC  L  L+ G  +   I K        + NALIDM+AKCG +  A  LF   +  +  V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W  +IA    +G   EA++ F +M      P+ V FV +L A ++     +G   F + 
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHAC 658

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               G +        ++DM  + G++  + +   +M    + + W  ++S     G
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHG 713



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 2/298 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V  NK +      A A   DL  GK +HG  L+ +   DI V   L+ MY  C G  E 
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC-GETEK 382

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +++F  +  RD V+WSA+I    + G   +A+ LF++MQ   + P+ +T++++L AC D
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L++GK +  F  K  ++  +    AL+ M+AKCG    AL  F  M+ R IV+W S+
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G A  G    A+ +F ++  + + PD    VG++ AC+    +D+G      +    G
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLG 561

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
                     ++DM  + G +  A     K     + + W  +I+A    G  K A S
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAIS 619



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 170/341 (49%), Gaps = 46/341 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ P+K+T+ FVLKAC G  +L  G   HG + +     D+ +   LV MY S  G
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMY-SKMG 178

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD+M +RD V+W+AMI G ++     +A+D FR MQ+ GV P  ++++ +  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               L  +E+ + +  ++ ++  + S  + N LID+++KCGDVD A ++F  M  +  VS
Sbjct: 239 GICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-----------------------------------L 205
           W +++AG A +G  +E + LF++M                                   L
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +  +  D +    L+   + CG  +K ++ F  ++        +  +  ++  L ++G  
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-----DLVAWSAIIAALVQTGYP 411

Query: 266 KEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI 303
           +EA    Q+M    ++ N +   +++ AC     LKL +SI
Sbjct: 412 EEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 43/296 (14%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L      N   YP +L +C     LN    +H  ++   F    H    L+++Y S    
Sbjct: 24  LSSSTYTNYLHYPRLLSSCK---HLNPLLQIHAQIIVSGFKHH-HSITHLINLY-SLFHK 78

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            +L R VFD       + W++MI  Y R     +A++++  M   G+ PD+ T   VL A
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT    L+ G W    I+++ + R V +   L+DM++K GD+ +A ++F  M  R +V+W
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV------------------------ 217
            ++IAGL+      EAV  F  M   GV P  V+ +                        
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 218 ---------GLLSACSHCGLVDKGREYFDSM--KNDFG---IIPKIEHYGCMVDML 259
                    GL+   S CG VD  R  FD M  ++D     ++    H GC V++L
Sbjct: 259 RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/507 (40%), Positives = 304/507 (59%), Gaps = 35/507 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  + P+ FT   +L ACA +  LN+GK +H  +L+ +      V N L+ MY    GG+
Sbjct: 268 EPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK-SGGV 326

Query: 63  ELGR---------------------------------KVFDEMSERDSVSWSAMIGGYAR 89
           E+ R                                 ++F+++ +RD V+W+AMI GY +
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            GL  DA++LFR M   G  P+  T+  +LS  + L  LE GK + +   K   + +  +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
            NALI M+AK G+++ A ++F   NG+  IVSWTS+I  LA HG G EA+ LFE ML  G
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD + +VG+LSAC+H GLV++GR+Y++ M     I P + HY CM+D+  R+G ++EA
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           + FI+ MPIE + I W +L+++C       LA+   +RL+  +P +   Y+ L+++Y+  
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            +WE   + R++M  RG++K  G + I + NE++ F   D  H Q  EIY+++ E+  ++
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK G++P T  VL D+ EE KE  L  HSEKLAIAF LL TP  T +RI+KNLRVCNDCH
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCH 746

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           SA KFISK+  REI+VRD  RFHHFKD
Sbjct: 747 SAIKFISKLVGREIIVRDATRFHHFKD 773



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 69/389 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+   V P++FT   VL +CA    L++G+ +H  V+K   G  + V  +L++MY  C  
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G  EL    F++M +RD VSW++MI GY++ 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G + +A+ +F +M     + PD  T+ ++LSAC +L  L +GK + ++I +     S  +
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI M+AK                                  G+V  A ++F  +  R
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
            +V+WT++I G   +G   +A+ LF  M+  G  P+      +LS  S   +++ G++ +
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++K      P + +   ++ M  ++G +  A         +   + W ++I A    G
Sbjct: 433 ASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 296 ELKLAESITKRL--IGNEPMHESNYVLLS 322
             K A ++ +R+  +G +P H +   +LS
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 73/374 (19%)

Query: 2   LEYGVSPNKFTY-PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           +E G SP    +   +L+    I D   G+SVH  ++K      +++ N L+  Y     
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G  E+ R++  EM + D VSW+A+I GY + 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           GL  +AI +F +M    V P + T+  VLS+C     L++G+ + SF+ K  +   V + 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 151 NALIDMFAKCGD-------------------------------VDKALKLFRSMNGRTIV 179
            +L++M+AKCGD                                + A   F  M  R IV
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           SW S+I+G +  G  LEA+ +F +ML E  + PD+     +LSAC++   ++ G++    
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI--- 297

Query: 239 MKNDFGIIPKIEHYG----CMVDMLCRSGRVKEAHEFIQ-KMPIEANPIIWRTLISACCA 293
             + + +  + E  G     ++ M  +SG V+ A   ++       N I + +L+     
Sbjct: 298 --HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 294 RGELKLAESITKRL 307
            G +K A  I  +L
Sbjct: 356 LGNVKPAREIFNKL 369



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   +L   + +  L  GK +H + +K        V N L+ MY    G
Sbjct: 400 MVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT-G 458

Query: 61  GIELGRKVFD-EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I + ++VFD    +++ VSW++MI   A+ GL  +AI+LF +M   G+ PD IT V VL
Sbjct: 459 NINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVL 518

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SACT +G +E G K+     E   +  ++     +ID++ + G + +A     SM     
Sbjct: 519 SACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPD 578

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            ++W S++A   +H     A    E +L    P +  A++ L +  S CG  +   +   
Sbjct: 579 NIAWGSLLASCKIHKNADLAKVAAERLLLID-PGNSGAYLALANVYSACGKWENAAQTRK 637

Query: 238 SMKN 241
            MK+
Sbjct: 638 LMKD 641


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/479 (43%), Positives = 303/479 (63%), Gaps = 5/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M+E GV P+  T   +  A A  GD    KSVH  V +  +   DI   N +V MY    
Sbjct: 260 MMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMS 319

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTV 118
             I+  +KVFD + +RD VSW+ +I GY + GL+ +AI ++  M    G+ P + T V+V
Sbjct: 320 K-IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSV 378

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L A + LG L+ G  + +   K  +N  V +   LID++AKCG + +A+ LF  M  R+ 
Sbjct: 379 LPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST 438

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             W ++IAGL +HG G +A++LF +M +  + PD V FV LL+ACSH GLVD+GR +FD 
Sbjct: 439 GPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDL 498

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  +GI+P  +HY CMVDML R+G++ EA EFIQ MPI+ +  +W  L+ AC   G ++
Sbjct: 499 MQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVE 558

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + +  ++ L   +P +   YVL+S++YAK+ +W+    +R ++ ++ ++K PG + +E+ 
Sbjct: 559 MGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVK 618

Query: 359 NEIYEFVCGDKS--HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
             +  F  G ++  H Q +EI   L ++  KMK AGYVP  S VL D+ E++KE  LN H
Sbjct: 619 GSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNH 678

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIAF ++ TPPGTP+ I KNLRVC DCHSATK+ISKI  REI+VRD +RFHHFKD
Sbjct: 679 SERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKD 737



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 8/343 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGR 66
           P+ FT+P +++A  G         +H   L+      ++    +LVH Y    G +    
Sbjct: 67  PDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRF-GRVAEAY 122

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +VFDEM ERD  +W+AM+ G  R   + DA+ L  +M   GV  D +T+ +VL  C  LG
Sbjct: 123 RVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLG 182

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
              +   +  +  K  ++  + +CNALID++ K G + +A  +F  M  R +V+W S+I+
Sbjct: 183 DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIIS 242

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
                G+   AV LF  M+E+GV PD +  V L SA + CG     +     ++     +
Sbjct: 243 ANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDV 302

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
             I     MVDM  +  ++  A +    +P + + + W TLI+     G    A  I   
Sbjct: 303 GDIIAGNAMVDMYAKMSKIDAAQKVFDNLP-DRDVVSWNTLITGYMQNGLANEAIRIYND 361

Query: 307 LIGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +  +E +   +  +V +   Y+ L   ++  ++  +  K G+ 
Sbjct: 362 MHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLN 404



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 13/329 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV+ +  T   VL  C  +GD  L   +H   +K     ++ V N L+ +YG   G
Sbjct: 159 MVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKL-G 217

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF  M+ RD V+W+++I    + G    A++LF  M  SGVCPD +T+V++ S
Sbjct: 218 MLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLAS 277

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVG---LCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           A    G     K V  ++ ++     VG     NA++DM+AK   +D A K+F ++  R 
Sbjct: 278 AVAQCGDELGAKSVHCYVRRR--GWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRD 335

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKG-REY 235
           +VSW ++I G   +G   EA+ ++ +M    G+ P    FV +L A S+ G + +G R +
Sbjct: 336 VVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMH 395

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             S+K   G+   +    C++D+  + G++ EA    + MP  +    W  +I+     G
Sbjct: 396 ALSIKT--GLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG-PWNAIIAGLGVHG 452

Query: 296 ELKLAESITKRLIGNE--PMHESNYVLLS 322
               A S+  ++   E  P H +   LL+
Sbjct: 453 HGAKALSLFSQMQQEEIKPDHVTFVSLLA 481


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 305/473 (64%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  NK TY  VL      G L  G+ VH  V       D+ V   LV+MYG C+  +E 
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS-VEE 63

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSAC 122
            R  F+++S  + VSWSAM+  YA+ G +  A++L+R+M  +  G+ P+ +T +T+L AC
Sbjct: 64  ARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDAC 123

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + LGAL  G+ + + + ++  +  + +CNAL++ + +CG +  A  +F  M  R ++SW+
Sbjct: 124 SFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWS 183

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+I+  A  GR  EA+ L+  ML  G  PDD+ F+ +L ACS+ G+V+   ++F S+  D
Sbjct: 184 SMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGD 243

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
             + P +EHY CMVD+L R+G++++A + ++ MP    P+++ T++SAC    +++  E+
Sbjct: 244 TQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEA 303

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             + +   +P + S Y+ L++IY+   R +   +IR++M++RG+KK PG + IE+ + ++
Sbjct: 304 AAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVH 363

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
           EF+ GDK H Q  EIY  +  +GR+MK+AGY   T  VL D+ E++KE+ L  HSEKLAI
Sbjct: 364 EFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAI 423

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF L+ TPPG P+RIVKNLRVC+DCH+ATK ISK+  REI+VRD +RFHHF D
Sbjct: 424 AFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLD 476



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 28/290 (9%)

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M+I GV  +++T VTVLS  T  G+LE G+ V S +    +   V +  AL++M+ KC  
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLL 220
           V++A   F  ++   +VSW++++A  A +G    A+ L+ EM  A  G+ P+ V F+ LL
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            ACS  G + +GR+   ++  + G    +     +V+   R G + +A      M    +
Sbjct: 121 DACSFLGALAEGRKIHAAVA-ERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR-RRD 178

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
            I W ++ISA   RG +  A  +  R++ +E     + + +S ++A              
Sbjct: 179 VISWSSMISAFAQRGRVDEAMELYHRML-SEGTLPDDIIFISVLFA-------------- 223

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE-MLDEMGRKMK 389
                      S ++E   + +  + GD     + E Y  M+D +GR  K
Sbjct: 224 --------CSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGK 265


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/506 (39%), Positives = 311/506 (61%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML +G++P++ T   VL ACA + DL LG+S+H  V +       ++   L+ MY  C  
Sbjct: 230 MLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGD 289

Query: 59  -----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                         G +++ R +FDEM  RD +++++M+ GY  
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIH 349

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +A+ LF  M+   +  D  T+V +L+AC  LGAL+ G+ + + IE+++V   + L
Sbjct: 350 SGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYL 409

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+DM+ KCG VD+A  +F+ M  R + +WT++IAGLA +G G  A+  F +M   G 
Sbjct: 410 GTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGF 469

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V+++ +L+ACSH  L+++GR YFD M+  + I P+IEHYGCM+D+L RSG + EA 
Sbjct: 470 QPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAM 529

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + ++ MPI+ N +IW +++SAC     + LA+   + L+  EP  +  YV L +IY    
Sbjct: 530 DLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSR 589

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +WE  +KIR +M++R +KK  G + I +  ++++FV  DKSH +  EI  ML+E+  ++K
Sbjct: 590 QWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLK 649

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P TS++ +D++EE+KE AL  HSEKLAIAF L+   P  P+ I KNLRVC DCHS
Sbjct: 650 SLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHS 709

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K IS+++NREI+VRDR RFHHF++
Sbjct: 710 AIKLISRLWNREIIVRDRSRFHHFRE 735



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 151/347 (43%), Gaps = 79/347 (22%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIG---DLNLGKSVHGAVLKFQFGDDI-HVQNTLVHMYG 56
           M   GV P+ FT+ F+ K  +       L L   +H A L+         V N+L+HMY 
Sbjct: 94  MRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMY- 152

Query: 57  SCEGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTD---------------- 95
                I LG     R+ FDE+  +D+V+W+ +I G A++G+  D                
Sbjct: 153 -----IRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW 207

Query: 96  ---------------AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
                          A+  F+ M   G+ PDE+T++ VLSAC  L  LE+G+ +   +E+
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEE 267

Query: 141 QMVNRSVGLCNALIDMFAKCGD--------------------------------VDKALK 168
           + +  S  L  ALIDM+AKCGD                                VD A  
Sbjct: 268 KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARS 327

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           LF  M  R I+++ S++ G    G+  EA+ LF  M    +  D+   V LL+AC+  G 
Sbjct: 328 LFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGA 387

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           + +GR     ++    +   I     ++DM  + GRV EA    Q+M
Sbjct: 388 LQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRM 433


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 305/479 (63%), Gaps = 6/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   VSP+ +T+  V+K+CA +  L +GK VH   +   FG D +VQ  LV  Y  C G
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKC-G 156

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD M E+  V+W++++ G+ + GL+ +AI +F QM+ SG  PD  T V++LS
Sbjct: 157 DMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLS 216

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA+ +G WV  +I  + ++ +V L  ALI+++++CGDV KA ++F  M    + +
Sbjct: 217 ACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA 276

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           WT++I+    HG G +AV LF +M  + G  P++V FV +LSAC+H GLV++GR  +  M
Sbjct: 277 WTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRM 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN---PIIWRTLISACCARGE 296
              + +IP +EH+ CMVDML R+G + EA++FI ++        P +W  ++ AC     
Sbjct: 337 TKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRN 396

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
             L   I KRLI  EP +  ++V+LS+IYA   + ++ + IR+ M +  ++K  G ++IE
Sbjct: 397 YDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIE 456

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++N+ Y F  GD+SH ++ EIY  L+ +  + K+ GY P + EV+  + EE+KE AL  H
Sbjct: 457 VENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYH 516

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLA+AF LLKT     I IVKNLR+C DCHSA K+IS + NR+I VRD+ RFHHF++
Sbjct: 517 SEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQN 574



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+ N   Y  +++A   +  L   + VH  ++   +G    +   L+ +  S    I   
Sbjct: 5   VAANSAAYEAIVRAGPRVKQL---QQVHAHLIVTGYGRSRSLLTKLITLACSARA-IAYT 60

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             +F  +   D   ++++I   ++L L    +  +R+M  S V P   T  +V+ +C DL
Sbjct: 61  HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +GK V              +  AL+  ++KCGD++ A ++F  M  ++IV+W S++
Sbjct: 121 SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLV 180

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G   +G   EA+ +F +M E+G  PD   FV LLSAC+  G V  G      + ++ G+
Sbjct: 181 SGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GL 239

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              ++    ++++  R G V +A E   KM  E N   W  +ISA    G
Sbjct: 240 DLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHG 288


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 306/510 (60%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G+ P  FT+  +LKAC+   D+NLG+ VH   +L   FG D++V NTL+ MY  C 
Sbjct: 130 MRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKC- 188

Query: 60  GGIELGRKVFDEMSERDSVSWS-------------------------------AMIGGYA 88
           G +  G +VFDEM +RD +SW+                               AM+ GYA
Sbjct: 189 GCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYA 248

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV--NRS 146
           +     +A+++F +MQ +GV  DE+T+V V+SAC  LGA +   WV    E+       +
Sbjct: 249 QNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSN 308

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V + +ALIDM+AKCG V+ A K+F  M  R + S++S+I G AMHG    A+ LF+EML+
Sbjct: 309 VVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLK 368

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + P+ V F+G+L+ACSH G+V++G++ F  M+   G+ P  +HY CMVD+L R+GR++
Sbjct: 369 TEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLE 428

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA   ++ MP+  +  +W  L+ AC   G   +A+     L   EP    NY+LLS+IYA
Sbjct: 429 EALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYA 488

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE-IYEFVCGDKSHHQSKEIYEMLDEMG 385
              RW+  +K+R++M  +G+KK PG + +E     I+EF  GD SH +S+EI + L+++ 
Sbjct: 489 SAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLL 548

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            ++K  GY P  S V  DI++E+K+  L  HSEKLA+AF LL T  G  IRIVKNLR+C 
Sbjct: 549 DRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICE 608

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCHS     S+I  REIVVRD  RFHHF+D
Sbjct: 609 DCHSVMCGASQITGREIVVRDNMRFHHFRD 638



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 34/256 (13%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VF ++   +   W+A+I GYA  G   +++ L+  M+  G+ P   T   +L AC+  
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 126 GALEVGKWVES--------------------------------FIEKQMVNRSVGLCNAL 153
             + +G+ V +                                 +  +M++R V    +L
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           I  +AK G+++ A +LF  +  + +V+WT+++ G A + R  EA+ +FE M  AGV  D+
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 214 VAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           V  VG++SAC+  G         D + ++ FG    +     ++DM  + G V++A++  
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 273 QKMPIEANPIIWRTLI 288
           ++M  E N   + ++I
Sbjct: 333 ERME-ERNVYSYSSMI 347



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 11/239 (4%)

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDKALKL- 169
           E  +V+VL  CT +  +   K V + I ++ + +   +   L+    K    +D   +L 
Sbjct: 39  ESRLVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLV 95

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F+ +       WT++I G A+ G  +E+V L+  M   G+ P    F  LL ACS    V
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           + GR+         G    +     ++DM  + G +   H    +M ++ + I W +LI 
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIV 214

Query: 290 ACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           A    G ++ A  +   L    PM +   +  +   YA+  R  +  ++ E M   G+K
Sbjct: 215 AYAKVGNMEAASELFDGL----PMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/506 (39%), Positives = 302/506 (59%), Gaps = 33/506 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE 59
           E  ++P++FT   VL ACA +G++ +GK VH  +L+ +   +  V N L+  Y   GS E
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E  R++F  M+ RD V+W+AMI GY + 
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G + +AIDLFR M   G  P+  T+  VLS C  L  L+ GK +     + ++ +S  + 
Sbjct: 410 GRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVS 469

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           NA+I M+A+ G    A ++F  +  R   ++WTS+I  LA HG+G EAV LFEEML AGV
Sbjct: 470 NAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGV 529

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD + +VG+LSACSH G V++G+ Y+D +KN+  I P++ HY CMVD+L R+G   EA 
Sbjct: 530 EPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 589

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFI++MP+E + I W +L+SAC      +LAE   ++L+  +P +   Y  ++++Y+   
Sbjct: 590 EFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 649

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    +I +   ++ ++K  G +   + ++I+ F   D  H Q   +Y M   M  ++K
Sbjct: 650 RWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 709

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AG+VP    VL D+++E KE+ L++HSEKLAIAF L+ TP  T +R++KNLRVCNDCH+
Sbjct: 710 GAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHA 769

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K ISK+ +REI+VRD  RFHHF+D
Sbjct: 770 AIKAISKVTDREIIVRDATRFHHFRD 795



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 69/379 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M   G +P +FT   VL +CA      +G+ VH  V+K   G  + V N++++MYG C  
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L   +F+ M +R  VSW+AMI GY + 
Sbjct: 215 SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQN 274

Query: 91  GLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           GL   A+ LF R +  S + PDE T+ +VLSAC +LG + +GK V ++I +  +  +  +
Sbjct: 275 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 334

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI  +AK                                  GD++ A ++F  MN R
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-Y 235
            +V+WT++I G   +GR  EA+ LF  M+  G  P+      +LS C+    +D G++ +
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++++       + +   ++ M  RSG    A     ++      I W ++I A    G
Sbjct: 455 CRAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 296 ELKLAESITKRLI--GNEP 312
           + + A  + + ++  G EP
Sbjct: 513 QGEEAVGLFEEMLRAGVEP 531



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 154/361 (42%), Gaps = 72/361 (19%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----------- 61
           Y  +L+ C    +   G+++H   +K       ++ N L+  YG   GG           
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 62  --IELGRK-----------------------VFDEMSERDSVSWSAMIGGYARLGLSTDA 96
             I L R+                       VF EM ERD+VSW+ M+ G  R G   +A
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           I     M   G  P + T+  VLS+C    A  VG+ V SF+ K  +   V + N++++M
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNM 208

Query: 157 FAKCGD-------------------------------VDKALKLFRSMNGRTIVSWTSVI 185
           + KCGD                               +D A  LF SM  R+IVSW ++I
Sbjct: 209 YGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMI 268

Query: 186 AGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDF 243
           AG   +G   +A+ LF  ML E+ + PD+     +LSAC++ G V  G++     ++ + 
Sbjct: 269 AGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEM 328

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAES 302
               ++ +   ++    +SG V+ A   + Q M  + N I +  L+      G+++ A  
Sbjct: 329 AYNSQVTN--ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESARE 386

Query: 303 I 303
           +
Sbjct: 387 M 387



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   VL  CA +  L+ GK +H   ++        V N ++ MY    G
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYAR-SG 480

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                R++FD++  R ++++W++MI   A+ G   +A+ LF +M  +GV PD IT V VL
Sbjct: 481 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 540

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SAC+  G +  GK + +    +  +   +     ++D+ A+ G   +A +  R M     
Sbjct: 541 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 600

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            ++W S+++   +H +  E   L  E L +  P +  A+  + +  S CG
Sbjct: 601 AIAWGSLLSACRVH-KNAELAELAAEKLLSIDPNNSGAYSAIANVYSACG 649


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 300/467 (64%), Gaps = 3/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + +T+P VL  C  +G +N  KSVHG ++K  F +   V N LV MY    G ++    V
Sbjct: 365 DDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAK-TGDMDCAYTV 421

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F++M E+D +SW++++ GYA+     +++ +F  M+++GV PD+  + ++LSAC +L  L
Sbjct: 422 FEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLL 481

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E GK V     K  +  S  + N+L+ M+AKCG +D A  +F SM  + +++WT++I G 
Sbjct: 482 EFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGY 541

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A +G+G  ++  ++ M+ +G  PD + F+GLL ACSH GLVD+GR+YF  M   +GI P 
Sbjct: 542 AQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPG 601

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EHY CM+D+  RSG++ EA + + +M ++ +  +W++L+SAC     L+LAE     L 
Sbjct: 602 PEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLF 661

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EPM+   YV+LS++Y+   +W    KIR++M  +G+ K PG + +E+++ +  F+  D
Sbjct: 662 ELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDD 721

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           + H +  EIY  +DE+  ++K+AGYVP  S  L D+++E KE  L  HSEKLA+AF LL 
Sbjct: 722 RGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLA 781

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            PP  PIRI KNLRVC DCHSA K+IS+++ R I++RD + FHHF++
Sbjct: 782 APPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFRE 828



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 19/294 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   ++FT   VL+ C+ +G +  G+ +HG V+K  F  ++ V   LV MY  C+  +  
Sbjct: 157 GWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKC-VSE 215

Query: 65  GRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
              +F   E   ++ V W+AM+ GYA+ G    A++ FR M   GV  ++ T  T+L+AC
Sbjct: 216 AEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTAC 275

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + + A   G+ V  FI K     +V + +AL+DM+AKCGD+  A  +  +M    +VSW 
Sbjct: 276 SSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWN 335

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S++ G   HG   EA+ LF+ M    +  DD  F  +L+ C   G ++         K+ 
Sbjct: 336 SLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINP--------KSV 386

Query: 243 FGIIPK--IEHY----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G+I K   E+Y      +VDM  ++G +  A+   +KM +E + I W +L++ 
Sbjct: 387 HGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 44/321 (13%)

Query: 43  DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA-------------------- 82
           + I+  N L++   S  G +   RK+FD+M ++D  SW+                     
Sbjct: 63  ESIYQTNQLLNQL-SKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDG 121

Query: 83  -----------MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
                      +I GY + G   +A DLFR M++ G    + T+ +VL  C+ LG ++ G
Sbjct: 122 CSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTG 181

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLA 189
           + +  F+ K     +V +   L+DM+AKC  V +A  LF+ +  + +  V WT+++ G A
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPK 248
            +G G +AV  F  M   GV  +   F  +L+ACS       G +    + K+ FG    
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVY 301

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           ++    +VDM  + G +K A   ++ M  + + + W +L+      G     E    RL 
Sbjct: 302 VQ--SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG----LEEEALRLF 354

Query: 309 GNEPMHESNYVLLSHIYAKLL 329
            N  MH  N  +  + +  +L
Sbjct: 355 KN--MHGRNMKIDDYTFPSVL 373



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 13/194 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+P++F    +L ACA +  L  GK VH   +K        V N+LV MY  C G ++ 
Sbjct: 460 GVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKC-GCLDD 518

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F  M  +D ++W+A+I GYA+ G   +++  +  M  SG  PD IT + +L AC+ 
Sbjct: 519 ADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSH 578

Query: 125 LGALEVGKWVESFIEKQMVNRSVGL------CNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            G ++ G+  + F   Q +N+  G+         +ID+F + G +D+A +L   M+ +  
Sbjct: 579 AGLVDEGR--KYF---QQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPD 633

Query: 179 VS-WTSVIAGLAMH 191
            + W S+++   +H
Sbjct: 634 ATVWKSLLSACRVH 647


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 294/471 (62%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+ T   VLK+ A +    + + +H   LK  F  D +V N+L+  YG C G +E 
Sbjct: 308 GIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC-GHVED 366

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+E    D V +++++  YA+ G   +A+ L+ +MQ  G+ PD     ++L+AC  
Sbjct: 367 ATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACAS 426

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A E GK V   I K      +   N+L++M+AKCG ++ A   F  +  R IVSW+++
Sbjct: 427 LSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAM 486

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA HG G EA+ LF++ML+ GVPP+ +  V +L AC+H GLV + + YF+SMK  FG
Sbjct: 487 IGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFG 546

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P  EHY CM+D+L R+G+++ A E + KMP +AN ++W  L+ A      + L E   
Sbjct: 547 IEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAA 606

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L+  EP     +VLL++IYA +  W+K  ++R +M    +KK PG + +E+ +++Y F
Sbjct: 607 EMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTF 666

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GD+SH +S EIY  LDE+   +KKAGYVP     L D+   +KE  L  HSEKLA+AF
Sbjct: 667 IVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAF 726

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+ TPPG PIR+ KNLR+C DCH+  KFISKI +REI+VRD +RFHHF++
Sbjct: 727 GLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFRE 777



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 7/287 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+F +P VLKAC    DL LGK VHG V+   F  D  V N+LV +Y  C GG   
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKC-GGFGD 63

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD + +R  VSW+A+   Y    +  +A+ LF  M +SG+ P+E ++ ++++ CT 
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ +  ++ K   +      NAL+DM+AK G ++ A  +F  +    IVSW ++
Sbjct: 124 LEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAI 183

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           IAG  +H     A+ L  EM ++G+ P+       L AC+   L + GR+   S+ K D 
Sbjct: 184 IAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDM 243

Query: 244 GIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           G        G  ++DM  +   + +A    + MP E + I W  +IS
Sbjct: 244 G---SDSFLGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVIS 286



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 155/299 (51%), Gaps = 9/299 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN+F+   ++  C G+ D   G+ +HG ++K  +  D    N LV MY    G
Sbjct: 102 MVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKV-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VFDE+++ D VSW+A+I G         A++L R+M  SG+CP+  T+ + L 
Sbjct: 161 ILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +   E+G+ + S + K  +     L   LIDM++KC  +D A  +F+ M  R +++
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W +VI+G + +    EA +LF  M   G+  +      +L + +        R+ +  S+
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 240 KNDFGIIPKIEHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           K+ F    + ++Y    ++D   + G V++A    ++ PI  + +++ +L++A    G+
Sbjct: 341 KSGF----EFDNYVVNSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDGQ 394



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+ F    +L ACA +     GK VH  +LKF F  DI   N+LV+MY  C G
Sbjct: 405 MQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKC-G 463

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  +  R  VSWSAMIGG A+ G   +A+ LF+QM   GV P+ IT+V+VL 
Sbjct: 464 SIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLC 523

Query: 121 ACTDLGAL-EVGKWVESF-----IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           AC   G + E   +  S      IE    + +      +ID+  + G ++ A++L   M 
Sbjct: 524 ACNHAGLVAEAKHYFNSMKILFGIEPMQEHYA-----CMIDLLGRAGKLEAAMELVNKMP 578

Query: 175 GR-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
            +   + W +++    +H + ++      EML A  P      V L +  +  G+ DK
Sbjct: 579 FQANALVWGALLGAARIH-KNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDK 635



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 12/194 (6%)

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M + G+  +E    +VL ACT    L +GK V   +     +    + N+L+ ++AKCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLA---MHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
              A  LF ++  R++VSW ++ +      MHG   EAV+LF +M+ +G+ P++ +   +
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHG---EAVSLFHDMVLSGIRPNEFSLSSM 117

Query: 220 LSACSHCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           ++ C+  GL D  +GR+    +    G          +VDM  + G +++A     ++  
Sbjct: 118 INVCT--GLEDSVQGRKIHGYLIK-LGYDSDAFSANALVDMYAKVGILEDASSVFDEIA- 173

Query: 278 EANPIIWRTLISAC 291
           + + + W  +I+ C
Sbjct: 174 KPDIVSWNAIIAGC 187


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 303/474 (63%), Gaps = 1/474 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
            E G+ PN+ T   V+ ACAG+G+L++GK +HG  +K     ++ V N+L+++YG C G 
Sbjct: 132 FEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKC-GC 190

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E    +F+ MS +  VSW++M+  +  +GL+   I  F  M+ +G+  D+ T+V++L A
Sbjct: 191 LEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLA 250

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +LG  ++ + V  +I    ++ ++ +  AL+D++AK G +  + K+F  M     V+W
Sbjct: 251 CENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAW 310

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T++++  AMHGRG EA+  FE M+  GV PD V F  LLSACSH GLV++G+ YF  M  
Sbjct: 311 TAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYE 370

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            +G+  ++EHY CMVD+L RSG + +A++ I+ MP+E N  +W  LI AC  RG ++L +
Sbjct: 371 FYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGK 430

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            + +RL   +P    NY+ LS++Y+   +W   +K+R +M +R + + PG + IE  N+I
Sbjct: 431 EVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKI 490

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + FV GD+SH  +++IY  L+E+ RK ++ G+   T  VL D++EE KED +NKHSEKLA
Sbjct: 491 HCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLA 550

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           IAF LL T  G P+ I KN+R+C DCH   K IS I  R I++RD  RFHHF +
Sbjct: 551 IAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTN 604



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 144/286 (50%), Gaps = 14/286 (4%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCEGGIELGRKVFDEM 72
           ++ A +    ++  +++H  V+K    +   + + LV  Y   G  +  +EL    FDE+
Sbjct: 44  LITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALEL----FDEL 99

Query: 73  SERDSVSWSAMIGGYAR---LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
            ++D VSW+++I G++R   LG+      LFR     G+ P+E+T++ V+SAC  +G L+
Sbjct: 100 PDKDLVSWNSLISGFSRRADLGICLGL--LFRMRFEMGLKPNEVTVIPVVSACAGVGELD 157

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           VGK +     K  +   V + N+LI+++ KCG ++ A  LF  M+ +++VSW S++A   
Sbjct: 158 VGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHV 217

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
             G   + +  F  M  AG+  D    V LL AC + G V K  E       + G+   +
Sbjct: 218 HMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLG-VRKLAEAVHGYILNGGLDGNL 276

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                ++D+  + G + ++ +    M I  + + W  ++S+    G
Sbjct: 277 AIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTAMLSSYAMHG 321



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++ ++ T   +L AC  +G   L ++VHG +L      ++ +   L+ +Y    G
Sbjct: 232 MRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKL-G 290

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVF  M   D+V+W+AM+  YA  G   +AI+ F  M   GV PD +T   +LS
Sbjct: 291 TLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLS 350

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC+  G +E GK + +   E   V   V   + ++D+  + G ++ A KL +SM
Sbjct: 351 ACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSM 404


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/503 (41%), Positives = 298/503 (59%), Gaps = 33/503 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ + +  ++KACA +G +  GK VH   +     DD  V+++LV MY  C G  ++
Sbjct: 100 GLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKC-GLPDI 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP---- 110
           GR VFD +S ++S+SW+AMI GYA+ G   DAI LF++M           ISG+      
Sbjct: 159 GRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNW 218

Query: 111 ------------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D   + +++ A  +L  L +GK +   +       S+ + NA
Sbjct: 219 VDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNA 278

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKC DV  A K+F  M  R IVSWTS+I G A HG   EA++L+  ML  G+ P+
Sbjct: 279 LVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPN 338

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGL+ ACSH GLV KGR +F+SM  D+GI P ++HY C++D+L RSG ++EA   I
Sbjct: 339 EVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLI 398

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           + MP + +   W  L+SAC       +   +   L+  +P   S Y+LLS+IYA    WE
Sbjct: 399 KAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWE 458

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
             +K+R +M    +KK PG + I L  E   F+ G+ SH   +EI+ +L+E+  +MKK G
Sbjct: 459 SVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRG 518

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           Y+P TS VL D+ +++KE  L  HSE+LA+A+ LLK  PG  + IVKNLRVC DCH+  K
Sbjct: 519 YIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLK 578

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
           FIS I  REIVVRD +R+HHFKD
Sbjct: 579 FISIIVKREIVVRDANRYHHFKD 601



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           + L+ACA      +GK +H  ++K        + N L++MYG C G I+    +F+++  
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKC-GLIQDALNLFNQLPH 66

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKW 133
           RD +SW++++    +  L    + +F  M +  G+ PD      ++ AC  LGA++ GK 
Sbjct: 67  RDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQ 126

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           V +      V+    + ++L+DM+AKCG  D    +F S++ +  +SWT++I+G A  GR
Sbjct: 127 VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGR 186

Query: 194 GLEAVALFEEM 204
            L+A+ LF++M
Sbjct: 187 KLDAIQLFQKM 197



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 42/218 (19%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +V  L AC    +  +GK +   I K  +++   L N LI+M+ KCG +  AL LF  + 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSAC---------- 223
            R  +SW S++            +++F  M  + G+ PD   F  L+ AC          
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGK 125

Query: 224 -------------------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
                                    + CGL D GR  FDS+ +   I      +  M+  
Sbjct: 126 QVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSI-----SWTAMISG 180

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +SGR  +A +  QKMP++ N + W  LIS     G 
Sbjct: 181 YAQSGRKLDAIQLFQKMPVK-NLLSWTALISGLVQSGN 217


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/455 (45%), Positives = 293/455 (64%), Gaps = 3/455 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +  L  G +VH   +   FG D  VQ  LV +Y  C G + + RK+FD + +R  V+W+A
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKC-GQLPVARKLFDAIRDRSVVAWNA 180

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GY + GL+  AI+++R+MQ++ V PD  T V  LSAC   GAL++G+ VE  I    
Sbjct: 181 MISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQ 240

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++ SV L +AL++M+A+CG V KA   F  +  R +V+WTS+IAG  MHG G EA+ LF 
Sbjct: 241 MDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFH 300

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
            M   G  P+DV FV +L+AC+H GLV++GR  FDSMK  +G++P+ EHY  MVDM  R+
Sbjct: 301 LMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRA 360

Query: 263 GRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           G + +A +FI   +P E  P +W  ++ AC       L   + +RLI  EP + S+ VLL
Sbjct: 361 GLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLL 420

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S+IYA   +     K+R VM KR +KK  G +LIEL    + F  G+KSH Q++EIY  L
Sbjct: 421 SNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYL 480

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT-PIRIVKN 440
           +E+  ++  AGYVP T  VL ++ EE++E AL  HSEKLA+A+ L+ +   T PIR++KN
Sbjct: 481 EELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKN 540

Query: 441 LRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LR+C DCH A KF+S + +REI+VRD+HRFHHFKD
Sbjct: 541 LRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKD 575



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 10/192 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T+   L ACA  G L+LG+ V   ++  Q    + + + LV+MY  C G +   
Sbjct: 206 VVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARC-GLVSKA 264

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R  FD + ER+ V+W++MI GY   G   +AI LF  M+  G  P+++T V VL+AC   
Sbjct: 265 RDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHA 324

Query: 126 GALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVDKALKL----FRSMNGRTIV 179
           G +  G+     +++   +V R+   C+ ++DM+ + G +D A++          G  + 
Sbjct: 325 GLVNEGRNAFDSMKRVYGLVPRAEHYCS-MVDMYGRAGLLDDAMQFICDSIPEEPGPEV- 382

Query: 180 SWTSVIAGLAMH 191
            WT+++    MH
Sbjct: 383 -WTAMLGACKMH 393


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/474 (41%), Positives = 292/474 (61%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN FT+  VL++C+ + D   GK VH  ++K    DD  V   LV MY     
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E     FD +  RD  SW+ +I GYA+   +  A+  FRQMQ  G+ P+E T+ + LS
Sbjct: 304 -LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLS 362

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ +  LE G+ + +   K      + + +AL+D++ KCG ++ A  +F+ +  R IVS
Sbjct: 363 GCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVS 422

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G + HG+G +A+  F  ML  G+ PD+  F+G+LSACS  GLV++G++ FDSM 
Sbjct: 423 WNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMS 482

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P IEHY CMVD+L R+G+  E   FI++M +    +IW T++ AC   G +   
Sbjct: 483 KIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFG 542

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L   EPM +S+Y+LLS+I+A   RW+    IR +M  RG+KK PG + +E+D +
Sbjct: 543 EKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQ 602

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+  D SH + +EIY  LD++G+ +   GYVP T  VL +++ ++K + L  HSE+L
Sbjct: 603 VHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERL 662

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A++FALL T    PIRI KNLR+C DCH   K IS I N+EIVVRD  RFHHFK
Sbjct: 663 ALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFK 716



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 148/304 (48%), Gaps = 19/304 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY--GSC 58
           M   G  PN+FT   ++     +GDL  G+S+HG + K+ F  D  V N L+ MY    C
Sbjct: 143 MRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC 202

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
              +E G KVF+ M+  D VSW+A++ G+           +F QM + G  P+  T ++V
Sbjct: 203 ---VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISV 259

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L +C+ L   E GK V + I K   +    +  AL+DM+AK   ++ A   F  +  R I
Sbjct: 260 LRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDI 319

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SWT +I+G A   +  +AV  F +M   G+ P++      LS CSH   ++ GR+    
Sbjct: 320 FSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL--- 376

Query: 239 MKNDFGIIPKIEHYG------CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
                 +  K  H+G       +VD+  + G ++ A E I K  I  + + W T+IS   
Sbjct: 377 ----HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA-EAIFKGLISRDIVSWNTIISGYS 431

Query: 293 ARGE 296
             G+
Sbjct: 432 QHGQ 435



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 7/219 (3%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +KFT   VLK CA  G L  GK +H   L+     D  +  +LV MY  C G +    KV
Sbjct: 50  SKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKC-GTVYDALKV 108

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F ++   D V+WSAMI G  + G   +A +LF  M+  G  P++ T+ +++S  T++G L
Sbjct: 109 FTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDL 168

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G+ +   I K        + N LI M+ K   V+   K+F +M    +VSW ++++G 
Sbjct: 169 RYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGF 228

Query: 189 ---AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
                 GRG     +F +ML  G  P+   F+ +L +CS
Sbjct: 229 YDSQTCGRGPR---IFYQMLLEGFKPNMFTFISVLRSCS 264



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +EL  ++F  M E++ VSW+A++ GYA+LG     + LF +M+       + T+ TVL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C + G+L  GK + +   +        L  +L+DM++KCG V  ALK+F  +    +V+W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I GL   G G EA  LF  M   G  P+      L+S  ++ G +  G+     +  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP--IIWRTLISA-----CCAR 294
            +G          ++ M  +S  V++ ++  + M    NP  + W  L+S       C R
Sbjct: 181 -YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM---TNPDLVSWNALLSGFYDSQTCGR 236

Query: 295 G 295
           G
Sbjct: 237 G 237


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+ +    +L ACA  G+L  GK VH  + +     +  V N L  MY  C G
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKC-G 503

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    VF  M ++D +SW+ MIGGY +  L  +A+ LF +MQ     PD  T+  +L 
Sbjct: 504 SMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESK-PDGTTVACILP 562

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L AL+ G+ +  +  +   +    + NA++DM+ KCG +  A  LF  +  + +VS
Sbjct: 563 ACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVS 622

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+  F +M   G+ PD+V+F+ +L ACSH GL+D+G + F+ MK
Sbjct: 623 WTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMK 682

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  I P +EHY CMVD+L R+G + +AH+FI+ MPI+ +  IW  L+  C    ++KLA
Sbjct: 683 KECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLA 742

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  +WE+  K+R+ + +RG+KK PG + IE+  +
Sbjct: 743 EKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGK 802

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I  FV GD S  Q+K+I  +L  +  KMK+ GY P T+  LL+ +E +KE AL  HSEKL
Sbjct: 803 INIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKL 862

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF +L  PPG  IR+ KNLRVC DCH   KF+SK  +REI++RD  RFHHFKD
Sbjct: 863 AMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKD 917



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 6/290 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G+ PN +T+  +LK  A +  +  G+ VHG + K  F     V N+L+  Y     
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGR- 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   +K+FDE+++RD +SW++MI GY + GL    I++F +M + GV  D  TMV V  
Sbjct: 301 KVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFV 360

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC ++G L +GK + S+ I+   ++R V   N L+DM++KCGD++ A+++F  M+ +T+V
Sbjct: 361 ACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVV 420

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+I G    G    A+ LF+EM   GV PD  A   +L+AC+  G +  G+   D +
Sbjct: 421 SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI 480

Query: 240 K-NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           + N+      + +   + DM  + G +K+AH+    M  + + I W T+I
Sbjct: 481 RENNLETNSFVSN--ALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 7/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           ML +GV  +  T   V  ACA IG L LGK +H   +K    D ++   NTL+ MY  C 
Sbjct: 343 MLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKC- 401

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    +VF+ M E+  VSW++MI GY R GLS  AI LF +M+  GV PD   + ++L
Sbjct: 402 GDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSIL 461

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +AC   G L+ GK V  +I +  +  +  + NAL DM+AKCG +  A  +F  M  + ++
Sbjct: 462 NACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVI 521

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-S 238
           SW ++I G   +    EA+ LF EM +    PD      +L AC+    +DKGRE    +
Sbjct: 522 SWNTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACILPACASLAALDKGREIHGYA 580

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           ++N +     + +   +VDM  + G +  A      +P   + + W  +I+ 
Sbjct: 581 LRNGYSEDKYVTN--AVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAG 629



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 2/284 (0%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
            Y  +L+ CA    +  G+ V   +       D  +   LV MY  C G ++ GR VFD+
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKC-GDLKEGRMVFDK 210

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +SE     W+ MI  Y+  G   ++I+LF+QM   G+ P+  T  ++L     +  +E G
Sbjct: 211 LSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEG 270

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + V   I K   N    + N+LI  +     V  A KLF  +  R ++SW S+I+G   +
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN 330

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G     + +F +ML  GV  D    V +  AC++ G +  G+           +  ++  
Sbjct: 331 GLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRF 390

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              ++DM  + G +  A    ++M  E   + W ++I+     G
Sbjct: 391 NNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVREG 433


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 302/473 (63%), Gaps = 1/473 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  PN+ T   V+ ACA +G L+ GKS+HG V+K        V N+L++MYG   G +
Sbjct: 234 ESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL-GFL 292

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   ++F+EM  R  VSW++M+  +   G +   +DLF  M+ +G+ PD+ TMV +L AC
Sbjct: 293 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 352

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           TD G     + + ++I +   N  + +  AL++++AK G ++ +  +F  +  R  ++WT
Sbjct: 353 TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWT 412

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++AG A+H  G EA+ LF+ M++ GV  D V F  LLSACSH GLV++G++YF+ M   
Sbjct: 413 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 472

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + + P+++HY CMVD+L RSGR+++A+E I+ MP+E +  +W  L+ AC   G ++L + 
Sbjct: 473 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKE 532

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + ++L+  +P    NY++LS+IY+    W   +K+R +M +R + + PG + IE  N+I+
Sbjct: 533 VAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIH 592

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            FV GD+ H +S EI+  L+E+ RK+ +AG  P T  VL DI+EE K D +NKHSEKLAI
Sbjct: 593 RFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAI 652

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF LL T  G P+ I KNLR+C DCHS  KF S +  R I++RD  RFHHF D
Sbjct: 653 AFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFAD 705



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F + +C  +   +   ++H  V+K     D  + + LV MY    G  E  +++FDEM  
Sbjct: 147 FAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKL-GYDEDAQRLFDEMPN 202

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKW 133
           RD VSW++++ G +  G     ++ F +M+  SG  P+E+T+++V+SAC  +GAL+ GK 
Sbjct: 203 RDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKS 262

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + K  ++    + N+LI+M+ K G +D A +LF  M  R++VSW S++     +G 
Sbjct: 263 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 322

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             + + LF  M  AG+ PD    V LL AC+  GL  +  E   +  +  G    I    
Sbjct: 323 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNADIIIAT 381

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA----CCARGELKLAESITKRLIG 309
            ++++  + GR+  + +  +++  + + I W  +++      C R  +KL + + K  + 
Sbjct: 382 ALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGV- 439

Query: 310 NEPMHESNYVLLSHIYA 326
                E ++V  +H+ +
Sbjct: 440 -----EVDHVTFTHLLS 451



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++P++ T   +L+AC   G     +S+H  + +  F  DI +   L+++Y    G
Sbjct: 333 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL-G 391

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F+E+ +RD+++W+AM+ GYA      +AI LF  M   GV  D +T   +LS
Sbjct: 392 RLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLS 451

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +E G K+ E   E   V   +   + ++D+  + G ++ A +L +SM      
Sbjct: 452 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 511

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
             W +++    ++G       + E++L    P D   ++ L +  S  GL
Sbjct: 512 GVWGALLGACRVYGNVELGKEVAEQLLSLD-PSDHRNYIMLSNIYSAAGL 560



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 97/192 (50%), Gaps = 12/192 (6%)

Query: 102 QMQISGVCPDEI--TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159
           ++  S +  D I  ++V  +S+CT +        + + + K +      + + L+ M+ K
Sbjct: 130 KLHNSSLLADSIVQSLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFK 186

Query: 160 CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL--FEEM-LEAGVPPDDVAF 216
            G  + A +LF  M  R +VSW S+++GL+  GRG     L  F  M  E+G  P++V  
Sbjct: 187 LGYDEDAQRLFDEMPNRDLVSWNSLMSGLS--GRGYLGACLNAFCRMRTESGRQPNEVTL 244

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
           + ++SAC+  G +D+G+     +    G+  K +    +++M  + G +  A +  ++MP
Sbjct: 245 LSVVSACAXMGALDEGKS-LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 303

Query: 277 IEANPIIWRTLI 288
           + +  + W +++
Sbjct: 304 VRS-LVSWNSMV 314


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 297/467 (63%), Gaps = 1/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           NKFT    L A A +  L +GK +HG +++     D  V + L  MYG C G IE  R +
Sbjct: 202 NKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKC-GSIEEARHI 260

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M +RD V+W+AMI  Y + G   +  DLF  +  SG+ P+E T   VL+AC +  + 
Sbjct: 261 FDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSE 320

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E+GK V  ++ +   +      +AL+ M++KCG++  A ++F+      + SWTS+IAG 
Sbjct: 321 ELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGY 380

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A +G+  EA+  FE ++++G  PD + FVG+LSAC+H GLVDKG +YF S+K  +G+   
Sbjct: 381 AQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHT 440

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            +HY C++D+L RSG+  EA   I KM ++ +  +W +L+  C   G LKLA+   + L 
Sbjct: 441 ADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALF 500

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EP + + YV L++IYA    W +  KIR+ MD RG+ K PG + I +  +++ F+ GD
Sbjct: 501 EIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGD 560

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
            SH +SKEI E L ++ ++MK+ G+VP T+ VL D+ +E KE  L+ HSEKLA+AF ++ 
Sbjct: 561 DSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIIS 620

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           TP GTPI++ KNLR C DCH+A KFISKI NR+I+VRD +RFH F+D
Sbjct: 621 TPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFED 667



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 158/340 (46%), Gaps = 35/340 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-------- 59
           P+   Y  ++++C     L  GK VH  +    F   + + N L+ MY  C+        
Sbjct: 68  PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127

Query: 60  ----------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
                                 G ++  + +FD+M ERD+ SW+AMI GY R     +A+
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEAL 187

Query: 98  DLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           +LFR M+ S     ++ T+ + L+A   +  L +GK +  +I +  ++    + +AL DM
Sbjct: 188 ELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDM 247

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           + KCG +++A  +F  M  R IV+WT++I      GR  E   LF ++L +G+ P++  F
Sbjct: 248 YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            G+L+AC++    + G++    M    G  P       +V M  + G +  A    ++ P
Sbjct: 308 SGVLNACANQTSEELGKKVHGYMTR-VGFDPFSFAASALVHMYSKCGNMVSAERVFKETP 366

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMH 314
            + +   W +LI+     G+   A    + L+  G +P H
Sbjct: 367 -QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDH 405



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 120/254 (47%), Gaps = 13/254 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G+ PN+FT+  VL ACA      LGK VHG + +  F       + LVHMY  C G
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKC-G 353

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF E  + D  SW+++I GYA+ G   +AI  F  +  SG  PD IT V VLS
Sbjct: 354 NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLS 413

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC   G ++ G  +  S  E+  +  +      +ID+ A+ G  D+A  +   M+ +   
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473

Query: 179 VSWTSVIAGLAMHGR----GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
             W S++ G  +HG        A ALFE  +E   P   V    + +       V K R+
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFE--IEPENPATYVTLANIYATAGMWSEVAKIRK 531

Query: 235 YFDSMKNDFGIIPK 248
             D    D G++ K
Sbjct: 532 TMD----DRGVVKK 541


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/493 (40%), Positives = 311/493 (63%), Gaps = 34/493 (6%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL ACA I +L  G+ V   + + +   ++ + N ++ MY  C G IE  +++FD M E+
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC-GSIEDAKRLFDAMEEK 296

Query: 76  DSVSWSAMIGGYA-------------------------------RLGLSTDAIDLFRQMQ 104
           D+V+W+ M+ GYA                               + G   +A+ +F ++Q
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQ 356

Query: 105 IS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +   +  ++IT+V+ LSAC  +GALE+G+W+ S+I+K  +  +  + +ALI M++KCGD+
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           +K+ ++F S+  R +  W+++I GLAMHG G EAV +F +M EA V P+ V F  +  AC
Sbjct: 417 EKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCAC 476

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVD+    F  M++++GI+P+ +HY C+VD+L RSG +++A +FI+ MPI  +  +
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ AC     L LAE    RL+  EP ++  +VLLS+IYAKL +WE  +++R+ M  
Sbjct: 537 WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRV 596

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G+KK PG + IE+D  I+EF+ GD +H  S+++Y  L E+  K+K  GY P  S+VL  
Sbjct: 597 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQI 656

Query: 404 INEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           I EE+ KE +LN HSEKLAI + L+ T     IR++KNLRVC DCHS  K IS++Y+REI
Sbjct: 657 IEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREI 716

Query: 463 VVRDRHRFHHFKD 475
           +VRDR+RFHHF++
Sbjct: 717 IVRDRYRFHHFRN 729



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 7/275 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           +++ C  +  L   K  HG +++     D +  + L  M   S    +E  RKVFDE+ +
Sbjct: 36  LIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKW 133
            +S +W+ +I  YA       +I  F  M     C P++ T   ++ A  ++ +L +G+ 
Sbjct: 93  PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 152

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +     K  V   V + N+LI  +  CGD+D A K+F ++  + +VSW S+I G    G 
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A+ LF++M    V    V  VG+LSAC+    ++ GR+    ++ +  +   +    
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLTLAN 271

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            M+DM  + G +++A      M  E + + W T++
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 305



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L+  +  N+ T    L ACA +G L LG+ +H  + K     + HV + L+HMY  C G 
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC-GD 415

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E  R+VF+ + +RD   WSAMIGG A  G   +A+D+F +MQ + V P+ +T   V  A
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           C+  G ++     ES   +   N  +         ++D+  + G ++KA+K   +M    
Sbjct: 476 CSHTGLVDEA---ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532

Query: 178 IVS-WTSVIAGLAMHG 192
             S W +++    +H 
Sbjct: 533 STSVWGALLGACKIHA 548


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/502 (42%), Positives = 310/502 (61%), Gaps = 39/502 (7%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +F+ P VLKAC  +   + G+ VHG VLK     D  V N++V MY    G IEL R+VF
Sbjct: 109 EFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDF-GEIELARRVF 167

Query: 70  DEMSERDSVSWSAMIGGYARLG-------------------------------LSTDAID 98
           D M  RD VSW++MI GY + G                                   A+D
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALD 227

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC-NALIDMF 157
           LFR+M   G+ PD   +V+VLSA  DLG +E GKW+ +++    +  S G   +ALIDM+
Sbjct: 228 LFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMY 287

Query: 158 AKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           +KCG ++ A  +FRS++  R I  W S+I+GLA+HG   EA+ +F EM    + P+++ F
Sbjct: 288 SKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITF 347

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
           +GLLS CSH GLV++G+ YF+SM   + I+P+I+HYGCM+D+  R+GR+++A   IQ MP
Sbjct: 348 LGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMP 407

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336
            EA+ + W+ ++SA    G +++ +S   R I   P   S+YVLLS+IYAK  RW+   K
Sbjct: 408 FEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAK 467

Query: 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCG---DKSHHQSKEIYEMLDEMGRKMKKAGY 393
           IR +M +RG+KKI G + + ++ +++EF+ G   D S+  S ++   + E+  ++K  GY
Sbjct: 468 IRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGY 525

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
            P  ++VLLDI +E KE  LN HSEK+AIAF L+      PI IVKNLRVC DCH   K 
Sbjct: 526 EPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKL 585

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           +SK+YNR+I++RD++RFHHF++
Sbjct: 586 VSKVYNRQIIMRDQNRFHHFEN 607



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 60/326 (18%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-----GGIELGRKVFD 70
           VL  C  + +L   + +H  ++K      ++ Q T+  +   C      GG++    VF 
Sbjct: 12  VLDKCKSLCEL---RQIHAQMIKTNL---LNHQFTVSRLIAFCSLSGVSGGLDYASSVFS 65

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-----QISGVCPDEITMVTVLSACTDL 125
            +   +S  + A+I G++      +++ L+ +M       SGV   E ++ +VL AC  L
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGKL 122

Query: 126 GALEVGK-----------WVESFIEKQMV--------------------NRSVGLCNALI 154
            A + G+           W + F+   MV                    NR V   N++I
Sbjct: 123 LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMI 182

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
             + K G+++ A K+F +M+ + +V+WTS+I+    +   ++A+ LF EML  G+ PD  
Sbjct: 183 AGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGP 242

Query: 215 AFVGLLSACSHCGLVDKGR---EYFDSMKNDF--GIIPKIEHYGCMVDMLCRSGRVKEAH 269
           A V +LSA +  G V++G+    Y    K +   G I        ++DM  + G ++ A+
Sbjct: 243 AIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGS-----ALIDMYSKCGYIENAY 297

Query: 270 EFIQKMPIEANPIIWRTLISACCARG 295
              + +    N   W ++IS     G
Sbjct: 298 HVFRSISHRRNIGDWNSMISGLAIHG 323


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 302/475 (63%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN FTY  +L A  G+    +    H   +K  +     V   L+  Y    G
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVK-RG 55

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   KVF  + E+D V+WSAMI GYA++G +  A+ +F QM    + P+E T   +++
Sbjct: 56  NVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIIN 115

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC    A +E GK + ++  K   N ++ + +AL+ M++K GD++ A ++F+    R +V
Sbjct: 116 ACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLV 175

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG G +A+ +FEEM    +  D V F+G++SAC+H GL ++G+ YFD M
Sbjct: 176 SWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIM 235

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D  I P++EHY CMVD+  R+G + +A E I +MP  A+  +WRTL++A C    L++
Sbjct: 236 VKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEV 295

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +    +LI  +P + ++YVLL+++YA +  W+++ K+R++M+++ +KK+ G + IE+ N
Sbjct: 296 GKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKN 355

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F+ GD SH  S +IY  L+E+  ++K AGY P TS V  D++EE KE  L++HSE+
Sbjct: 356 KTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSER 415

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF L+ TPPGTP++IVKNLRVC DCHS  K IS +  R+IVVRD +RFHHFK
Sbjct: 416 LAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFK 470


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 309/477 (64%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   +  + F +  V KACA +  L  G +VH   +   FG D  V   LV +Y  C G
Sbjct: 96  LLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKC-G 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + RK+FD + +++ V+W+AMI GY + GL+   I+++++M+++   PD +T V  LS
Sbjct: 155 RLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLS 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GAL++G+ VE  I  + ++ SV L +AL++M+A+CG VDKA + F  +  R +V+
Sbjct: 215 ACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVT 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+IAG  MHG G EA+ L+  M   G PP+DV FV +LSAC+H GL+ +GR+ F  MK
Sbjct: 275 WTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMK 334

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ-KMPIEANPIIWRTLISACCARGELKL 299
             +G+ P++EHY  MVDM  R+GR++EA +FI+  MP +  P +W  ++ AC       L
Sbjct: 335 RVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSL 394

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + +RLI  EP + S +VLLS+IYA   +     K+R  M KR +KK  G +LIEL  
Sbjct: 395 GVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIELGG 454

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F  G+KSH +++EIY+ L+E+  ++  AGY+P T  VL ++ EE++E AL  HSEK
Sbjct: 455 TSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPETESVLHELEEEEREGALRYHSEK 514

Query: 420 LAIAFALLKTP-PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A+ L+ +    TP+R++KNLR+C+DCH A KF+S + NREI+VRD+HRFHHFKD
Sbjct: 515 LAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVENREIIVRDKHRFHHFKD 571


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/471 (42%), Positives = 303/471 (64%), Gaps = 6/471 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N  +  F LK C   GDL  G  +HG +    F  D  +  TL+ +Y +CE   +   KV
Sbjct: 112 NPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD-ACKV 170

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ--ISG-VCPDEITMVTVLSACTDL 125
           FDE+ +RD+VSW+ +   Y R   + D + LF +M+  + G V PD +T +  L AC +L
Sbjct: 171 FDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANL 230

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL+ GK V  FI++  ++ ++ L N L+ M+++CG +DKA ++F  M  R +VSWT++I
Sbjct: 231 GALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALI 290

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN-DFG 244
           +GLAM+G G EA+  F EML+ G+ P++    GLLSACSH GLV +G  +FD M++ +F 
Sbjct: 291 SGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFK 350

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P + HYGC+VD+L R+  + +A+  I+ M ++ +  IWRTL+ AC   G+++L E + 
Sbjct: 351 IKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVI 410

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
             LI  +     +YVLL + Y+ + +WEK T++R +M ++ +   PG + IEL   ++EF
Sbjct: 411 SHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEF 470

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIA 423
           +  D SH + +EIY+ML E+ +++K AGYV   +  L ++ +EE+K  AL  HSEKLAIA
Sbjct: 471 IVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIA 530

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           F +L TPPGT IR+ KNLR C DCH+  KF+S +Y+R ++VRDR RFHHFK
Sbjct: 531 FGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFK 581



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T    L+ACA +G L+ GK VH  + +      +++ NTLV MY  C G ++  
Sbjct: 213 VKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC-GSMDKA 271

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  M ER+ VSW+A+I G A  G   +AI+ F +M   G+ P+E T+  +LSAC+  
Sbjct: 272 YQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHS 331

Query: 126 GALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           G +  G     F ++       +  ++     ++D+  +   +DKA  L +SM  +   +
Sbjct: 332 GLVAEGMM---FFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDST 388

Query: 181 -WTSVIAGLAMHG 192
            W +++    +HG
Sbjct: 389 IWRTLLGACRVHG 401


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 294/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ FT   VL   A   D+  G  VHG  +K  F +D+ V ++L+ MY +C  
Sbjct: 161 MWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQ 220

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   KVFD  S+ D+V W++M+ GYA+ G   +A+ +FR+M  +GV P  +T  +++ 
Sbjct: 221 -MDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L  L +GK + +++ +   N ++ + ++LIDM+ KCG+VD A ++F  +    IVS
Sbjct: 280 AFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 339

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A+HG   EA  LFE M    V P+ + F+ +L+ACSH GLVD G +YF+SM 
Sbjct: 340 WTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMS 399

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +G +P +EH   + D L R+G + EA+ FI +M I+    +W TL+ AC       LA
Sbjct: 400 NQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLA 459

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K++   EP    ++V+LS++Y+   RW +  ++R+ M  +GMKK P  + IE+ N+
Sbjct: 460 EEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNK 519

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+  DKSH     I + L+    +M + GYVP   +VL DI EE K + L  HSEKL
Sbjct: 520 LHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKL 579

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F ++ TPPGT IR++KNLRVC DCH ATKFISKI  REIVVRD +RFH FKD
Sbjct: 580 AIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKD 634



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 161/336 (47%), Gaps = 31/336 (9%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV----------HMYG----S 57
           + P  LK+CAG+G   L  S+H   ++     D    N L+          H +G    S
Sbjct: 51  SLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPS 110

Query: 58  CEGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112
            EGG+E       RKVFDEM ERD+VSW+ +I G A      +A+ + R+M   G  PD 
Sbjct: 111 GEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDT 170

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            T+ TVL    +   ++ G  V  +  K   +  V + ++LIDM+A C  +D ++K+F S
Sbjct: 171 FTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDS 230

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            +    V W S++AG A +G   EA+ +F  ML+AGV P  V F  L+ A  +  L+  G
Sbjct: 231 FSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLG 290

Query: 233 RE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLI 288
           ++   Y    + +  I         ++DM C+ G V  A        I++  I+ W  +I
Sbjct: 291 KQLHAYLIRARFNDNIFIS----SSLIDMYCKCGNVDIARRVFNG--IQSPDIVSWTAMI 344

Query: 289 SACCARGELKLAESITKRL-IGN-EPMHESNYVLLS 322
                 G    A  + +R+ +GN +P H +   +L+
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLT 380



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 99/258 (38%), Gaps = 36/258 (13%)

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE---ITMVTVLSACTDLGALEVGKWVE 135
           SW+  I   A  G    AI LF QM+ S V P      ++   L +C  LG   +   + 
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLH 72

Query: 136 -------SFIEKQMVNRSVGLCNALIDMFAKCGD-------------VDKALKLFRSMNG 175
                  SF ++   N  + LC  L       G               +   K+F  M  
Sbjct: 73  ALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-----GLVD 230
           R  VSW ++I G A H R  EA+++  EM   G  PD      +L   + C     G+V 
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G    +   ND  +         ++DM     ++  + +       + + ++W ++++ 
Sbjct: 193 HGYAIKNGFDNDVFV------GSSLIDMYANCTQMDYSMKVFDSFS-DCDAVLWNSMLAG 245

Query: 291 CCARGELKLAESITKRLI 308
               G ++ A  I +R++
Sbjct: 246 YAQNGSVEEALGIFRRML 263


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/484 (42%), Positives = 314/484 (64%), Gaps = 10/484 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCE 59
           M+  GV  +  T   VL AC+ +  L++GK +H  VL+     ++  V + LV MY +C 
Sbjct: 205 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 264

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTV 118
             +E GR+VFD +  R    W+AMI GYAR GL   A+ LF +M +++G+ P+  TM +V
Sbjct: 265 Q-VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASV 323

Query: 119 LSACT-DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           + AC   L A+  GK + ++  + M+   + + +AL+DM+AKCG ++ + ++F  M  + 
Sbjct: 324 MPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKN 383

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEML-EAG----VPPDDVAFVGLLSACSHCGLVDKG 232
           +++W  +I    MHG+G EA+ LF+ M+ EAG      P++V F+ + +ACSH GL+ +G
Sbjct: 384 VITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEG 443

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISAC 291
              F  MK+D G+ P  +HY C+VD+L R+G+++EA+E +  MP E + +  W +L+ AC
Sbjct: 444 LNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC 503

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
                ++L E   K L+  EP   S+YVLLS+IY+    W K  ++R+ M + G+KK PG
Sbjct: 504 RIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPG 563

Query: 352 STLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKED 411
            + IE  +E+++F+ GD SH QS++++  L+ +  KM+K GYVP TS VL +++E++KE+
Sbjct: 564 CSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKEN 623

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
            L  HSEKLAIAF +L TPPGT IR+ KNLRVCNDCH+ATKFISKI  REI+VRD  RFH
Sbjct: 624 LLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFH 683

Query: 472 HFKD 475
           HFK+
Sbjct: 684 HFKE 687



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 173/335 (51%), Gaps = 31/335 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCE 59
           M   G  P+ F +P VLKA +G+ DL  G+ +H A +KF +G   + V NTLV+MYG C 
Sbjct: 83  MTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKC- 141

Query: 60  GGI---------------ELGR-----KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL 99
           GGI               +LGR      +F+   +RD VSW+ MI  +++    ++A+  
Sbjct: 142 GGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAF 201

Query: 100 FRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ---MVNRSVGLCNALIDM 156
           FR M + GV  D +T+ +VL AC+ L  L+VGK + +++ +    + N  VG  +AL+DM
Sbjct: 202 FRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG--SALVDM 259

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVA 215
           +  C  V+   ++F  + GR I  W ++I+G A +G   +A+ LF EM++ AG+ P+   
Sbjct: 260 YCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTT 319

Query: 216 FVGLLSACSHC-GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
              ++ AC H    + KG+E       +  +   I     +VDM  + G +  +     +
Sbjct: 320 MASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNE 378

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           MP   N I W  LI AC   G+ + A  + K ++ 
Sbjct: 379 MP-NKNVITWNVLIMACGMHGKGEEALELFKNMVA 412



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           R + SW   +    R     +AI  + +M +SG  PD      VL A + L  L+ G+ +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 135 ES------------FIEKQMVNRSVGLC----------NALIDMFAKCGDVDKALKLFRS 172
            +             +   +VN   G C          NAL+ M+AK G VD +  LF S
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNM-YGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFES 173

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
              R +VSW ++I+  +   R  EA+A F  M+  GV  D V    +L ACSH   +D G
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 233

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           +E    +  +  +I        +VDM C   +V+        + +     +W  +IS   
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI-LGRRIELWNAMISGYA 292

Query: 293 ARG 295
             G
Sbjct: 293 RNG 295


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 304/510 (59%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + GV P  FT+  + KAC    D+ LG+ +HG  +L   FG+D+HV N+++ MY  C 
Sbjct: 137 MRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKC- 195

Query: 60  GGIELGRKVFDEMSERDSVSWS-------------------------------AMIGGYA 88
           G +E GRKVFDEM  RD +SW+                                M+ G+A
Sbjct: 196 GFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFA 255

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN--RS 146
           +     +AI  F +MQ  GV  DEIT++ V+SAC  LGA +   W+    EK       S
Sbjct: 256 QNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHS 315

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V + +ALIDM++KCG V  A ++F+ M  R + S++S+I G AMHGR  +A+ LF+EM++
Sbjct: 316 VVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVK 375

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + P+ V F+G+L+ACSH G+V++G + F+ M+  +GI P  +HY CMVD+L R+GR++
Sbjct: 376 TEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQ 435

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EAHE ++ MPIE +  +W  L+ AC       +A      L   EP    NY+LL++IYA
Sbjct: 436 EAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYA 495

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE-IYEFVCGDKSHHQSKEIYEMLDEMG 385
              RW   + +R++M  RG++K P  + IE +   ++EF  GD +H +S EI + L+++ 
Sbjct: 496 SCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLL 555

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +++  GY P  S V  D+N+EDK   L  HSEKLA+AF L+ T PG+ IRIVKNLR+C 
Sbjct: 556 DRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICE 615

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCHS     S+I  REI+VRD  RFHHF D
Sbjct: 616 DCHSVICGASQITGREIIVRDIMRFHHFHD 645



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 40/280 (14%)

Query: 68  VFDEMSERDSVSWSAMIGGY---ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC-- 122
           +F++++  +   ++A+I GY    RL  ST+   L R+    GV P   T   +  AC  
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRK---EGVVPVSFTFTALFKACGA 158

Query: 123 -TDLG--------ALEVGKWVE---------------SFIE------KQMVNRSVGLCNA 152
             D+G         + VG + E                F+E       +M NR V     
Sbjct: 159 KMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTE 218

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI  + K G+++ A +LF  +  + +V+WT +++G A + +  EA+  FE+M E GV  D
Sbjct: 219 LISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETD 278

Query: 213 DVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           ++  +G++SAC+  G         D + K++FG    +     ++DM  + G V +A+  
Sbjct: 279 EITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRV 338

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
            Q M  E N   + ++I      G +  A  +   ++  E
Sbjct: 339 FQGMK-ERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTE 377



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 6/191 (3%)

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDK-ALKL 169
           E  +VT L  C +L  +   K V + I    +++S  +   LI    K    VD   L +
Sbjct: 46  ESQIVTTLDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSI 102

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  +N      + ++I G  +  R  E+   +  M + GV P    F  L  AC     V
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR+         G    +     M+DM  + G ++   +   +MP   + I W  LIS
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP-NRDVISWTELIS 221

Query: 290 ACCARGELKLA 300
           A    G ++ A
Sbjct: 222 AYVKSGNMESA 232


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/509 (40%), Positives = 308/509 (60%), Gaps = 35/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +++    P+KFT    L ACA + +L LGK +H  +++ +F     V N L+ MY S  G
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMY-SKSG 327

Query: 61  GIELG---------------------------------RKVFDEMSERDSVSWSAMIGGY 87
           G+E+                                  R++FD +  RD V+W+AMI GY
Sbjct: 328 GVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGY 387

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            + G + DA++LFR M   G  P+  T+ T+LS  + L +L+ G+ + +   +     SV
Sbjct: 388 VQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSV 447

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
            + NALI M+AK G ++ A  +F  ++  R  ++WTS+I  LA HG G EA+ LFE MLE
Sbjct: 448 SVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLE 507

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            G+ PD + +VG+LSAC+H GLV++GR Y++ M+N   IIP   HY CM+D+  R+G ++
Sbjct: 508 NGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQ 567

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EAH FI+ MPIE + I W +L+++C     ++LAE   +RL+  EP +   Y  L+++Y+
Sbjct: 568 EAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYS 627

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +WE    IR+ M  +G+KK  G + +++ N+++ F   D  H Q   IYEM+ ++ +
Sbjct: 628 ACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWK 687

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           ++KK G+VP T  VL D+ EE KE  L+ HSEKLAIAF L+ TP  T +RI+KNLRVCND
Sbjct: 688 EIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCND 747

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CHSA KFISK+  REI+VRD  RFHHFK+
Sbjct: 748 CHSAIKFISKLVGREIIVRDATRFHHFKN 776



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 177/388 (45%), Gaps = 67/388 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+   V P +FT   VL +CA +  L +G+ VH  V+K      I V N+L++MY     
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L +  F++M ERD VSW+AMI GY + 
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 91  GLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWV--------------- 134
           G   +A+D+F +M + S   PD+ T+ + LSAC +L  L++GK +               
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAV 315

Query: 135 -----------------ESFIEKQMV-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
                            +  IE+ M+ N  V    AL+D + K GD++ A ++F S+  R
Sbjct: 316 GNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR 375

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +V+WT++I G   +G   +A+ LF  M++ G  P++     +LS  S    +D GR+  
Sbjct: 376 DVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIH 435

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S     G    +     ++ M  +SG + +A      +  + + I W ++I A    G 
Sbjct: 436 ASATRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGL 494

Query: 297 LKLAESITKRLIGN--EPMHESNYVLLS 322
            + A ++ +R++ N  +P H +   +LS
Sbjct: 495 GEEALTLFERMLENGIKPDHITYVGVLS 522



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 159/359 (44%), Gaps = 66/359 (18%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----------------- 55
           Y   L+      D   GKS+H  ++K      + + N L++ Y                 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 56  ------------GSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
                       G  +GG +E   +VF+EM E DSVSW+AMI GY ++G   +AI +FR+
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M    V P + T+  VL++C  +  L +G+ V SF+ K  ++  + + N+L++M+AK GD
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 163 -------------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
                                          VD A   F  M  R +VSW ++I+G   H
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 192 GRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKI 249
           G   EA+ +F +ML ++   PD       LSAC++   +  G++ +   ++ +F     +
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAV 315

Query: 250 EHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +   ++ M  +SG V+ A + I Q M    + I +  L+      G++  A  I   L
Sbjct: 316 GN--ALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSL 372



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           +M  +SV   N ++  +AK G +++A ++F  M     VSWT++I G    G+   A+ +
Sbjct: 73  EMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGM 132

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
           F EM+   VPP       +L++C+    +  GR+   S     G+   I     +++M  
Sbjct: 133 FREMVSDDVPPTQFTLTNVLASCAAVECLGIGRK-VHSFVVKHGLSSYISVANSLLNMYA 191

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +SG    A     +M +++    W T+IS+    G + LA+   +++I
Sbjct: 192 KSGDPVTAKIVFDRMKLKSTS-SWNTMISSHMQSGLVDLAQVQFEQMI 238


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/476 (43%), Positives = 303/476 (63%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   +  + F +  V KACA +  +  G  +H   +    G +  VQ +LV +Y  C G
Sbjct: 96  LLAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKC-G 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ RK+FD + ++  V+W+AMI GY + GL+  AI+++R+MQ++G  PD  T V  LS
Sbjct: 155 QLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLS 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GAL++G+ V+  I  + +  +V L  AL++M+A+CG V+KA + F  +  R +V+
Sbjct: 215 ACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVT 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+IAG  MHG G EAV LF  M + G PP+DV FV +LSAC+H GLV +GR+ F SMK
Sbjct: 275 WTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMK 334

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ-KMPIEANPIIWRTLISACCARGELKL 299
           + +G++P++EHY  MVDM  R+G + +A  FI   +P E  P +W  ++ AC    +  L
Sbjct: 335 SVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNL 394

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + +RLI  EP   S+ VLLS++YA   +     K+R+ M KR +KK  G +LIE+  
Sbjct: 395 GVEVAERLIALEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAG 454

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F  G+KSH ++ EIY+ L+++  K+   GYVP T  VL ++ EE++E AL  H EK
Sbjct: 455 VAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGEK 514

Query: 420 LAIAFALLKTPP-GTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AF L+ T    TPIRI+KNLR+C DCH A K++S + NREI+VRD HRFHHFK
Sbjct: 515 LAVAFGLMMTSGCTTPIRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFK 570


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 303/473 (64%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+ FT   +L       ++  GK +HG  ++  F  D+ + ++L+ MY  C   +EL
Sbjct: 194 NLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQ-VEL 252

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F  +S RD++SW+++I G  + G     +  FR+M    V P +++  +V+ AC  
Sbjct: 253 SVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAH 312

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRTIVSWT 182
           L AL +GK + ++I +   + +  + ++L+DM+AKCG++  A  +F    M  R +VSWT
Sbjct: 313 LTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWT 372

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G AMHG  L+AV+LFEEML  GV P  VAF+ +L+ACSH GLVD+G +YF+SM+ D
Sbjct: 373 AIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRD 432

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           FG+ P +EHY  + D+L R+GR++EA++FI  M  E    +W TL++AC A   ++LAE 
Sbjct: 433 FGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEK 492

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           +  +++  +P +   +V++S+IY+   RW    K+R  M K G+KK P  + IE+ N+++
Sbjct: 493 VVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVH 552

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F+ GDKSH    +I E L+ +  +M+K GYV  T+EVL D++EE K D L  HSE+LAI
Sbjct: 553 TFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAI 612

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ T  GT IR++KN+RVC DCH+A KF++KI  REI+VRD  RFHHFK+
Sbjct: 613 AFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKN 665



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 161/328 (49%), Gaps = 23/328 (7%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG-- 60
            +G+SP++  +P +L+A       NL +S+H AV++  F  D++  N L++MY       
Sbjct: 69  SFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHL 128

Query: 61  -------------------GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
                               I+  RK+FD M  RD VSW+ +I G A+ G+  +A+++ +
Sbjct: 129 SPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVK 188

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
           +M    + PD  T+ ++L   T+   +  GK +  +  +   ++ V + ++LIDM+AKC 
Sbjct: 189 EMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCT 248

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            V+ ++  F  ++ R  +SW S+IAG   +GR  + +  F  ML+  V P  V+F  ++ 
Sbjct: 249 QVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIP 308

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI-EAN 280
           AC+H   ++ G++    +    G          ++DM  + G +K A     K+ + + +
Sbjct: 309 ACAHLTALNLGKQLHAYIIR-LGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRD 367

Query: 281 PIIWRTLISACCARGELKLAESITKRLI 308
            + W  +I  C   G    A S+ + ++
Sbjct: 368 MVSWTAIIMGCAMHGHALDAVSLFEEML 395



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 5/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+  V P + ++  V+ ACA +  LNLGK +H  +++  F D+  + ++L+ MY  C G
Sbjct: 291 MLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKC-G 349

Query: 61  GIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            I++ R +F+  EM +RD VSW+A+I G A  G + DA+ LF +M + GV P  +  + V
Sbjct: 350 NIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAV 409

Query: 119 LSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           L+AC+  G ++ G K+  S      V   +    A+ D+  + G +++A     +M    
Sbjct: 410 LTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEP 469

Query: 178 IVS-WTSVIAGLAMH 191
             S W++++A    H
Sbjct: 470 TGSVWSTLLAACRAH 484



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           S++W  +I  YA  GL   ++  F  ++  G+ PD     ++L A T      + + + +
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 137 FIEKQMVNRSVGLCNALIDMFAK----------------------CGDVDKALKLFRSMN 174
            + +   +  +   NAL++M++K                         +D   KLF  M 
Sbjct: 101 AVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMP 160

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSW +VIAG A +G   EA+ + +EM +  + PD      +L   +    V KG+E
Sbjct: 161 VRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE 220

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
                    G    +     ++DM  +  +V E       +    + I W ++I+ C   
Sbjct: 221 -IHGYAIRHGFDKDVFIGSSLIDMYAKCTQV-ELSVCAFHLLSNRDAISWNSIIAGCVQN 278

Query: 295 GELKLAESITKRLIGN--EPMHES 316
           G         +R++    +PM  S
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVS 302


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 303/473 (64%), Gaps = 1/473 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  PN+ T   V+ ACA +G L+ GKS+HG V+K        V N+L++MYG   G +
Sbjct: 157 ESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL-GFL 215

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   ++F+EM  R  VSW++M+  +   G +   +DLF  M+ +G+ PD+ TMV +L AC
Sbjct: 216 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 275

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           TD G     + + ++I +   N  + +  AL++++AK G ++ +  +F  +  R  ++WT
Sbjct: 276 TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWT 335

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++AG A+H  G EA+ LF+ M++ GV  D V F  LLSACSH GLV++G++YF+ M   
Sbjct: 336 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 395

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + + P+++HY CMVD+L RSGR+++A+E I+ MP+E +  +W  L+ AC   G ++L + 
Sbjct: 396 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKE 455

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + ++L+  +P    NY++LS+IY+    W   +K+R +M +R + + PG + IE  N+I+
Sbjct: 456 VAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIH 515

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            FV GD+ H +S EI+  L+E+ RK+++AG  P T  VL DI+EE K D +NKHSEKLAI
Sbjct: 516 RFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAI 575

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF LL T  G P+ I KNLR+C DCHS  KF S +  R I++RD  RFHHF D
Sbjct: 576 AFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFAD 628



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 163/317 (51%), Gaps = 17/317 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F + +C  +   +   ++H  V+K     D  + + LV MY    G  E  +++FDEM  
Sbjct: 70  FAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKL-GYDEDAQRLFDEMPN 125

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKW 133
           +D VSW++++ G +  G     ++ F +M+  SG  P+E+T+++V+SAC D+GAL+ GK 
Sbjct: 126 KDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKS 185

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + K  ++    + N+LI+M+ K G +D A +LF  M  R++VSW S++     +G 
Sbjct: 186 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 245

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             + + LF  M  AG+ PD    V LL AC+  GL  +  E   +  +  G    I    
Sbjct: 246 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNADIIIAT 304

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA----CCARGELKLAESITKRLIG 309
            ++++  + GR+  + +  +++  + + I W  +++      C R  +KL + + K  + 
Sbjct: 305 ALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV- 362

Query: 310 NEPMHESNYVLLSHIYA 326
                E ++V  +H+ +
Sbjct: 363 -----EVDHVTFTHLLS 374



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++P++ T   +L+AC   G     +S+H  + +  F  DI +   L+++Y    G
Sbjct: 256 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL-G 314

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F+E+ +RD ++W+AM+ GYA      +AI LF  M   GV  D +T   +LS
Sbjct: 315 RLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLS 374

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +E G K+ E   E   V   +   + ++D+  + G ++ A +L +SM      
Sbjct: 375 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 434

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
             W +++    ++G       + E++L    P D   ++ L +  S  GL
Sbjct: 435 GVWGALLGACRVYGNVELGKEVAEQLLSLD-PSDHRNYIMLSNIYSAAGL 483



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 91/178 (51%), Gaps = 10/178 (5%)

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           ++V  +S+CT +        + + + K +      + + L+ M+ K G  + A +LF  M
Sbjct: 67  SLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVAL--FEEM-LEAGVPPDDVAFVGLLSACSHCGLVD 230
             + +VSW S+++GL+  GRG     L  F  M  E+G  P++V  + ++SAC+  G +D
Sbjct: 124 PNKDLVSWNSLMSGLS--GRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 181

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +G+     +    G+  K +    +++M  + G +  A +  ++MP+ +  + W +++
Sbjct: 182 EGKS-LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS-LVSWNSMV 237


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 319/540 (59%), Gaps = 65/540 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
           ML   + P++ T PFVLK+ A + D+ LG+ +HG V+K     D  V+ +LV MY     
Sbjct: 129 MLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGE 188

Query: 56  ----------------------------GSCE-GGIELGRKVFDEMSERDSVSWSAMIGG 86
                                       G C+ G +     +F+ M ER++ SW+++I G
Sbjct: 189 LGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLING 248

Query: 87  YAR--------------------------LGLSTD-----AIDLFRQMQISGVCPDEITM 115
           + R                           G S +     A+ +F +M   GV P+++T+
Sbjct: 249 FVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTV 308

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           V+ L ACT +GAL+VG+ + +++       + G+  AL+DM+AKCG++  A ++F    G
Sbjct: 309 VSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKG 368

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           + +++W+ +I G A+HG   +A+  F +M  AG+ PD+V F+ +L+ACSH G VD+G  +
Sbjct: 369 KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNF 428

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F+SM+ D+ I P ++HY  +VD+L R+GR+ EA  FIQ MPI  + +IW  L  AC A  
Sbjct: 429 FESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHK 488

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
            +++AE   ++L+  EP H  +YV LS++YA + RWE   ++R +M  RG++K PG + I
Sbjct: 489 NIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYI 548

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E++ +++ FV GD +H +++EI   L+E+    K+ GY+P T+ VL +I EE+KEDAL  
Sbjct: 549 EVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGS 608

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF L+ T PG+ IRIVKNLRVC DCHS  K+ SK+  REI++RD  RFHHFKD
Sbjct: 609 HSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKD 668



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI        +D AL +FR  +   +  + ++I GLA + R   +V+ F  ML   + PD
Sbjct: 78  LISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPD 137

Query: 213 DVAFVGLLSA-----------CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            +    +L +           C H G++  G E FDS                +VDM  +
Sbjct: 138 RLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVRV-----------SLVDMYVK 185

Query: 262 SGRVKEAHEFIQKMPIEANP---IIWRTLISACCARGELKLAESI 303
            G +    +   + P        ++W  LI+ CC  G+L  A S+
Sbjct: 186 IGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASL 230


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/465 (43%), Positives = 304/465 (65%), Gaps = 8/465 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEM 72
              A A + D  +  S+H  + K  F  +  V NT++  Y   +GG   +E+ RKVFD M
Sbjct: 203 AFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYA--KGGSRDLEVARKVFDTM 260

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTVLSACTDLGALEV 130
            ERD VSW++MI  YA+ G+S +AI L+ +M     G+  + + +  VL AC   GA++ 
Sbjct: 261 -ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 319

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK + + + +  +  +V +  +++DM++KCG V+ A + FR +  + I+SW+++I G  M
Sbjct: 320 GKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGM 379

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           HGRG EA+ +F EM  +G+ P+ + F+ +L+ACSH GL+D+GR ++++MK +FGI   +E
Sbjct: 380 HGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE 439

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           HYGCMVD+L R+G + EA+  I++M ++ +  IW  L+SAC     ++LAE   KRL   
Sbjct: 440 HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFEL 499

Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
           +  +   YVLLS+IYA+   W+   +IR ++  R ++K PG +  EL  +IY F  GDKS
Sbjct: 500 DASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKS 559

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
           H Q  EIY  L+++  +M++AGYVP T  VL D++EE+KE AL  HSEKLA+AFAL+ + 
Sbjct: 560 HPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSV 619

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           P + I I+KNLRVC+DCH+A KFI+KI  REI++RD  RFHHFKD
Sbjct: 620 PRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKD 664



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 10/255 (3%)

Query: 41  FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
           F  D +  + L+HMY  C   ++  R+ FDE+ + + V  +AM  GY R  L   +++LF
Sbjct: 125 FPSDPYSASALLHMYHHCSRPMD-ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELF 183

Query: 101 RQM--QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           R M    S    DE   +   SA   +    V   + + I K    R+ G+ N ++D +A
Sbjct: 184 RAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYA 243

Query: 159 KCG--DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDV 214
           K G  D++ A K+F +M  R +VSW S+IA  A +G   EA+ L+ +ML    G+  + V
Sbjct: 244 KGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAV 302

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
           A   +L AC+H G +  G+   + +    G+   +     +VDM  + GRV+ A    +K
Sbjct: 303 ALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMYSKCGRVEMASRAFRK 361

Query: 275 MPIEANPIIWRTLIS 289
           +  E N + W  +I+
Sbjct: 362 IK-EKNILSWSAMIT 375



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N      VL ACA  G +  GK +H  V++    ++++V  ++V MY  C G +E+
Sbjct: 296 GIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKC-GRVEM 354

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F ++ E++ +SWSAMI GY   G   +A+++F +M+ SG+ P+ IT ++VL+AC+ 
Sbjct: 355 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 414

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G L+ G+ W  +  ++  +   V     ++D+  + G +D+A  L + M  +   + W 
Sbjct: 415 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 474

Query: 183 SVIAGLAMH 191
           ++++   +H
Sbjct: 475 ALLSACRIH 483


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 303/473 (64%), Gaps = 1/473 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  PN+ T   V+ ACA +G L+ GKS+HG V+K        V N+L++MYG   G +
Sbjct: 214 ESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL-GFL 272

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   ++F+EM  R  VSW++M+  +   G +   +DLF  M+ +G+ PD+ TMV +L AC
Sbjct: 273 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 332

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           TD G     + + ++I +   N  + +  AL++++AK G ++ +  +F  +  R  ++WT
Sbjct: 333 TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWT 392

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++AG A+H  G EA+ LF+ M++ GV  D V F  LLSACSH GLV++G++YF+ M   
Sbjct: 393 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 452

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + + P+++HY CMVD+L RSGR+++A+E I+ MP+E +  +W  L+ AC   G ++L + 
Sbjct: 453 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKE 512

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + ++L+  +P    NY++LS+IY+    W   +K+R +M +R + + PG + IE  N+I+
Sbjct: 513 VAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIH 572

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            FV GD+ H +S EI+  L+E+ RK+++AG  P T  VL DI+EE K D +NKHSEKLAI
Sbjct: 573 RFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAI 632

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF LL T  G P+ I KNLR+C DCHS  KF S +  R I++RD  RFHHF D
Sbjct: 633 AFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFAD 685



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 163/317 (51%), Gaps = 17/317 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F + +C  +   +   ++H  V+K     D  + + LV MY    G  E  +++FDEM  
Sbjct: 127 FAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKL-GYDEDAQRLFDEMPN 182

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKW 133
           +D VSW++++ G +  G     ++ F +M+  SG  P+E+T+++V+SAC D+GAL+ GK 
Sbjct: 183 KDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKS 242

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + K  ++    + N+LI+M+ K G +D A +LF  M  R++VSW S++     +G 
Sbjct: 243 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 302

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             + + LF  M  AG+ PD    V LL AC+  GL  +  E   +  +  G    I    
Sbjct: 303 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNADIIIAT 361

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA----CCARGELKLAESITKRLIG 309
            ++++  + GR+  + +  +++  + + I W  +++      C R  +KL + + K  + 
Sbjct: 362 ALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV- 419

Query: 310 NEPMHESNYVLLSHIYA 326
                E ++V  +H+ +
Sbjct: 420 -----EVDHVTFTHLLS 431



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++P++ T   +L+AC   G     +S+H  + +  F  DI +   L+++Y    G
Sbjct: 313 MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKL-G 371

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F+E+ +RD ++W+AM+ GYA      +AI LF  M   GV  D +T   +LS
Sbjct: 372 RLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLS 431

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +E G K+ E   E   V   +   + ++D+  + G ++ A +L +SM      
Sbjct: 432 ACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS 491

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
             W +++    ++G       + E++L    P D   ++ L +  S  GL
Sbjct: 492 GVWGALLGACRVYGNVELGKEVAEQLLSLD-PSDHRNYIMLSNIYSAAGL 540



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 120/257 (46%), Gaps = 39/257 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-----------TDAID---------- 98
           GG+E+   VF++   R +V W++++    R G S           TD I           
Sbjct: 49  GGLEI---VFNQQLTRLAVPWNSIVSP-VRCGTSISHNRSFAFRHTDLIPKQFKRFNTNK 104

Query: 99  ---LFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
              +FR+  Q   V     ++V  +S+CT +        + + + K +      + + L+
Sbjct: 105 GCCIFREASQFIVVYSIVQSLVFAISSCTSVSYCSA---IHARVIKSLNYSDGFIGDRLV 161

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL--FEEM-LEAGVPP 211
            M+ K G  + A +LF  M  + +VSW S+++GL+  GRG     L  F  M  E+G  P
Sbjct: 162 SMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLS--GRGYLGACLNAFCRMRTESGRQP 219

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           ++V  + ++SAC+  G +D+G+     +    G+  K +    +++M  + G +  A + 
Sbjct: 220 NEVTLLSVVSACADMGALDEGKS-LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 278

Query: 272 IQKMPIEANPIIWRTLI 288
            ++MP+ +  + W +++
Sbjct: 279 FEEMPVRS-LVSWNSMV 294


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/479 (43%), Positives = 310/479 (64%), Gaps = 5/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P+ +    +LKAC     L  G+ VH   LK     +  V+  ++ +YG C G
Sbjct: 121 MLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKC-G 179

Query: 61  GIELGRKVFDEMSE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            +   R+VF+EM E    +D+V W+AMI G+ R      A++ FR MQ   V P+E T+V
Sbjct: 180 ELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 239

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VLSAC+ LGALE+G+WV S++ K  +  ++ + NALI+M+++CG +D+A  +F  M  R
Sbjct: 240 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 299

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            ++++ ++I+GL+M+G+  +A+ LF  M+   + P +V FVG+L+ACSH GLVD G + F
Sbjct: 300 DVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIF 359

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            SM  D+G+ P+IEHYGCMVD+L R GR++EA++ I+ M +  + I+  TL+SAC     
Sbjct: 360 HSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 419

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           L+L E + K L          YVLLSH+YA   +W++  ++R  M + GM+K PG + IE
Sbjct: 420 LELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 479

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++NEI+EF+ GD  H + + IYE L+E+ R ++  GY P    VL DI + +KE AL  H
Sbjct: 480 VNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIH 539

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAI + L+ T P T IR++KNLRVC DCHSA K I+KI  R++VVRDR+RFH+F++
Sbjct: 540 SERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFEN 598



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 11/284 (3%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  +++     D  +   L+     C   I+   ++F      +   ++A+I G+   G
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHA-IDYASRIFQYTHNPNVYLYTALIDGFVSSG 109

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV--NRSVGL 149
              DAI L+ +M    + PD   M ++L AC    AL  G+ V S   K  +  NR V L
Sbjct: 110 NYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRL 169

Query: 150 CNALIDMFAKCGDVDKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
              +++++ KCG++  A ++F  M      +  V WT++I G   +     A+  F  M 
Sbjct: 170 --RIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQ 227

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
              V P++   V +LSACS  G ++ GR +  S    F I   +     +++M  R G +
Sbjct: 228 GENVRPNEFTIVCVLSACSQLGALEIGR-WVHSYMRKFEIELNLFVGNALINMYSRCGSI 286

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
            EA     +M  + + I + T+IS     G+ + A  + + +IG
Sbjct: 287 DEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMIG 329


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 298/489 (60%), Gaps = 16/489 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G + NK T+   L   + +  L LGK +H  VLK    DD  V+N+L+ MY  C G
Sbjct: 511 MVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKC-G 569

Query: 61  GIELGRKVFDEMSER---------------DSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
            +E    +F  + +                +SVSWS+M+ GY + G   DA+  F  M  
Sbjct: 570 EMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMIC 629

Query: 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
           S V  D+ T+ +V+SAC   G LE+G+ V  +I+K      V L +++IDM+ KCG ++ 
Sbjct: 630 SQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLND 689

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           A  +F     R +V WTS+I+G A+HG+G EAV LFE M+  G+ P++V+FVG+L+ACSH
Sbjct: 690 AWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSH 749

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            GL+++G +YF  M+  +GI P  EH+ CMVD+  R+GR+ E  EFI    I     +WR
Sbjct: 750 AGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWR 809

Query: 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345
           + +S+C     +++   + K+L+  EP     Y+L S I A   RWE+  KIR +M +RG
Sbjct: 810 SFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRG 869

Query: 346 MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
           +KK P  + I+L N+++ FV GD+SH Q  +IY  LDE+  ++K+ GY    + V+ D+ 
Sbjct: 870 VKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVE 929

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           +E ++  L  HSEKLAIA+ ++ T PGTPIR++KNLRVC DCH+  K+ S++  REI++R
Sbjct: 930 QEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIR 989

Query: 466 DRHRFHHFK 474
           D HRFHHFK
Sbjct: 990 DIHRFHHFK 998



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 62/361 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + GV PN+FT   VLK+C+  + D  +GK +HG +L+     D  + N+++  Y  C 
Sbjct: 378 MQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCR 437

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ----------------- 102
                  K+F  M+E+D+VSW+ M+  Y ++G    ++DLFRQ                 
Sbjct: 438 -CFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLM 496

Query: 103 --------------MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
                         M  +G   +++T    L   + L  L +GK + + + K  V     
Sbjct: 497 RNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGF 556

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRT---------------IVSWTSVIAGLAMHGR 193
           + N+LIDM+ KCG+++KA  +F+ +   +                VSW+S+++G   +GR
Sbjct: 557 VRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGR 616

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH-- 251
             +A+  F  M+ + V  D      ++SAC+  G+++ GR+         G I KI H  
Sbjct: 617 FEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQV-------HGYIQKIGHGL 669

Query: 252 ----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
                  ++DM  + G + +A   I     + N ++W ++IS C   G+ + A  + + +
Sbjct: 670 DVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELM 728

Query: 308 I 308
           I
Sbjct: 729 I 729



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 130/264 (49%), Gaps = 34/264 (12%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N L+++Y   +  +E   K+F+E+ + D  SW+ +I G+AR+GLS D + LF +MQ  GV
Sbjct: 325 NHLLNLYAKSQN-LEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 109 CPDEITMVTVLSAC-TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC------- 160
           CP++ T+  VL +C +++    +GK +  +I +  ++    L N+++D + KC       
Sbjct: 384 CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443

Query: 161 ------------------------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
                                   GD+ K++ LFR + G+   SW ++I GL  +G    
Sbjct: 444 KLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERV 503

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+ L  +M+ AG   + + F   L   S   ++  G++    +    G++        ++
Sbjct: 504 ALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLK-VGVLDDGFVRNSLI 562

Query: 257 DMLCRSGRVKEAHEFIQKMPIEAN 280
           DM C+ G +++A    + +P E++
Sbjct: 563 DMYCKCGEMEKASVIFKHLPQESS 586


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/506 (41%), Positives = 310/506 (61%), Gaps = 32/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V  + +    +LKAC     L  GK VHG VLK   G D  +   LV +YG C G
Sbjct: 116 MVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKC-G 174

Query: 61  GIELGRKVFD-------------------------------EMSERDSVSWSAMIGGYAR 89
            +E  RK+FD                               EM  RD+V W+ +I G  R
Sbjct: 175 VLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVR 234

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G     +++FR+MQ+ GV P+E+T V VLSAC  LGALE+G+W+ +++ K  V  +  +
Sbjct: 235 NGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFV 294

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             ALI+M+++CGD+D+A  LF  +  + + ++ S+I GLA+HG+ +EAV LF EML+  V
Sbjct: 295 AGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERV 354

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ + FVG+L+ACSH GLVD G E F+SM+   GI P++EHYGCMVD+L R GR++EA 
Sbjct: 355 RPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAF 414

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           +FI +M +EA+  +  +L+SAC     + + E + K L  +  +   ++++LS+ YA L 
Sbjct: 415 DFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLG 474

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    ++RE M+K G+ K PG + IE++N I+EF  GD  H + K IY+ L+E+    K
Sbjct: 475 RWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTK 534

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY+P T   L DI++E KE AL  HSE+LAI + L+ T   T +R+ KNLR+C+DCH+
Sbjct: 535 FEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHA 594

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
             K I+KI  R+IVVRDR+RFHHF++
Sbjct: 595 MIKLIAKITRRKIVVRDRNRFHHFEN 620



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 120/281 (42%), Gaps = 35/281 (12%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           +S+H   +K +   D  V   L+ +Y  C+   I+   K+F      +   ++++I G+ 
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVY--CKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFV 101

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------- 141
             G  TDAI+LF QM    V  D   +  +L AC    AL  GK V   + K        
Sbjct: 102 SFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRS 161

Query: 142 ------------------------MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
                                   M  R V  C  +I     CG V++A+++F  M  R 
Sbjct: 162 IALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRD 221

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            V WT VI GL  +G     + +F EM   GV P++V FV +LSAC+  G ++ GR +  
Sbjct: 222 TVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR-WIH 280

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           +     G+       G +++M  R G + EA      + ++
Sbjct: 281 AYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVK 321


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/507 (40%), Positives = 312/507 (61%), Gaps = 35/507 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAV--LKFQFGDDIHVQNTLVHMYGSC 58
           ML  G++P++ T   +L AC  + DLN G S+H  V   +    D + V   L+ MY  C
Sbjct: 228 MLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV--ALIDMYAKC 285

Query: 59  E-------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGY 87
                                           G +++ R +FD+M + D ++++++I GY
Sbjct: 286 GDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGY 345

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
              G   +A+ LF +M+  G+  D  TMV +L+A   LGAL  G+ + + IE+++V R V
Sbjct: 346 IHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDV 405

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            L  AL+DM+ KCG V++A+  F+ M+ R + +W+++I GLA +G G  A+  F  M   
Sbjct: 406 YLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCD 465

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G   + V ++ +L+ACSH  L+D+GR YFD M+    I P+IEHYGCM+D+L RSG + E
Sbjct: 466 GFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDE 525

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A + +Q MP++ N +IW +++SAC     + LA++    L+  EP  ++ YV + +IY  
Sbjct: 526 AMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYID 585

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
             +WE  +KIR +M+KRG+KK  G + I +  ++++F+ GD+SH Q  EI  M++E+GR+
Sbjct: 586 SRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRR 645

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           +K AGY P TS++ +D++EE+KE AL  HSEKLAIAF L+   P  P+ I+KNLRVC DC
Sbjct: 646 LKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDC 705

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFK 474
           HSA K IS+++NREI+VRDR RFHHF+
Sbjct: 706 HSAIKLISRLWNREIIVRDRSRFHHFR 732



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 159/366 (43%), Gaps = 80/366 (21%)

Query: 6   VSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIH-VQNTLVHMYGSCEGGIE 63
           V P+ FT+ F+ K CA G   + LG+ +H A  +      +  + + ++HMY       E
Sbjct: 99  VPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYA------E 152

Query: 64  LG-----RKVFDEMSERDSV-------------------------------SWSAMIGGY 87
           LG     R+ FDE S +D V                               +W+ +I GY
Sbjct: 153 LGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGY 212

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           +R G + +A+D F  M   G+ PDE+T++ +LSAC  L  L  G  +   +  + +  S 
Sbjct: 213 SRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSD 272

Query: 148 GLCNALIDMFAKCGD--------------------------------VDKALKLFRSMNG 175
            L  ALIDM+AKCGD                                VD A  LF  M  
Sbjct: 273 KLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMED 332

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
             ++++ S+I G    GR  EA+ LF +M   G+  D+   VGLL+A +  G + +GR  
Sbjct: 333 HDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRAL 392

Query: 236 FDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
              ++    ++ +  + G  ++DM  + GRV+EA    ++M +  +   W  +I      
Sbjct: 393 HACIEQR--LVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMIGGLAFN 449

Query: 295 GELKLA 300
           G  K A
Sbjct: 450 GMGKAA 455


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 304/469 (64%), Gaps = 3/469 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T+ F L A A    L+    +H  +L+     DI +  TL+  Y  C G ++  ++
Sbjct: 98  PDALTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKC-GDLDSAQR 156

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFDE+  RD  +W+A+I G A+   S++A+ LF +M+  G   +EI+++  L+AC+ LGA
Sbjct: 157 VFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGA 216

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIA 186
           L  G+ V + + K  ++ +V +CNA+IDM+AKCG  DK  ++F +M  G+++V+W ++I 
Sbjct: 217 LRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIM 276

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
             AMHG G  A+ LFEEM +  V  D V ++ +L AC+H GLV++G   FD M    G+ 
Sbjct: 277 AFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVN 335

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
             ++HYG +VD+L R+GR+ EA+  I  MPI  + ++W++L+ AC   G +++AE  +++
Sbjct: 336 RNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRK 395

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+        ++VLLS++YA   RWE   ++RE M  R ++K+PG + IE++  I++FV 
Sbjct: 396 LVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVN 455

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD+SH   +EIY  LDE+  ++K  GYV  TS VL DI EEDKE+AL  HSEKLA+AF L
Sbjct: 456 GDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGL 515

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + T  GTPIR+ KNLR+C DCH   K ISKIY++EI+VRDR RFH FKD
Sbjct: 516 ISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKD 564



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G   N+ +    L AC+ +G L  G+ VH  V K     ++ V N ++ MY  C G
Sbjct: 192 MRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKC-G 250

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             + G +VF  M+  +  V+W+ MI  +A  G    A++LF +M  + V  D +T + VL
Sbjct: 251 FADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVL 310

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
            AC   G +E G  +   +  + VNR+V    +++D+  + G + +A ++  SM     +
Sbjct: 311 CACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDV 370

Query: 179 VSWTSVIAGLAMHG 192
           V W S++     +G
Sbjct: 371 VLWQSLLGACKTYG 384


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/415 (46%), Positives = 277/415 (66%), Gaps = 1/415 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L R+VF +M  +D VSWS MI G+A  G   DA   FR+++  G+ P+E+++  VL
Sbjct: 217 GELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVL 276

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC   GA E G+ +  F+EK    + + + NALID ++KCG++D A  +F +M  R+ V
Sbjct: 277 SACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAV 336

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++IAG+AMHG G EA+ LF EM E+ + PD + F+ +L ACSH GLVD G  YF  M
Sbjct: 337 SWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRM 396

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            N +GI P IEHYGCMVD+  R+G++++A++F+ +MPI  N I+WRTL+ AC   G L L
Sbjct: 397 VNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYL 456

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A  + ++L   +P +  ++VLLS+IYA   +W+    +R  M  + +KK PG ++IE++ 
Sbjct: 457 AGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNR 516

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDE-MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            IY FV G+K +  + E ++ L E M R   + GYVP    VL DI  E+KED++++HSE
Sbjct: 517 IIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSE 576

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           KLA+AF + K P G  IR+VKNLR+C DCH+  K ISK+Y  EIVVRDR RFH F
Sbjct: 577 KLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSF 631



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN+ +   VL ACA  G    G+ +HG V K  F   I V N L+  Y  C G +++
Sbjct: 264 GMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKC-GNLDM 322

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD M  R +VSW+AMI G A  G   +AI LF +M+ S + PD IT +++L AC+ 
Sbjct: 323 ARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSH 382

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
            G +++G  +    +    +   +     ++D++ + G + +A      M      + W 
Sbjct: 383 AGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWR 442

Query: 183 SVIAGLAMHG 192
           +++   ++HG
Sbjct: 443 TLLGACSIHG 452



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 42/288 (14%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F++ F+LKA A    L  G  +H   + +     + V  TL+ MY  C   +   RK
Sbjct: 104 PDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAEC-ACLVFARK 162

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFDEM E + V+W+A++    R     DA  +FR M I                      
Sbjct: 163 VFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPI---------------------- 200

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
                            R++   N ++  + K G++  A ++F  M  +  VSW+++I G
Sbjct: 201 -----------------RNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVG 243

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A +G   +A A F E+   G+ P++V+  G+LSAC+  G  + GR     ++   G + 
Sbjct: 244 FAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKS-GFLQ 302

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            I     ++D   + G +  A      M +  + + W  +I+     G
Sbjct: 303 IISVNNALIDTYSKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMHG 349



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 42/178 (23%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACS 224
           A +LF  +    +  + ++I GL+       A+ LF EM    V  PD  +F  LL A +
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 225 HCGLVDKG-----------------------------------REYFDSMKNDFGIIPKI 249
           +C  +  G                                   R+ FD M     I P I
Sbjct: 118 NCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-----IEPNI 172

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
             +  +V    R   VK+A +  + MPI  N   W  +++     GEL+LA  +  ++
Sbjct: 173 VAWNAIVAACFRCEGVKDAEQVFRCMPIR-NLTSWNIMLAGYTKAGELQLAREVFMKM 229


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G  PN +T+  +L +C+ + D++ G+ VH  ++K Q  D+  V   L+ MY  C  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E     F+ +S RD  +W+ +I  YA+      A++ FRQMQ  GV P+E T+   LS
Sbjct: 567 -LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS 625

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ L +LE G+ + S + K      + + +AL+DM+AKCG +++A  LF ++  R  ++
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA 685

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G A +G+G +A+  F  ML+ G+ PD V F G+LSACSH GLV++G+E+F+SM 
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMY 745

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DFGI P ++H  CMVD+L R G+  E  +FIQKM +  N +IW T++ A      L L 
Sbjct: 746 RDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLG 805

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L   +P  ES+Y+LLS+I+A   RW+   ++R +M  +G+KK PG + +E + +
Sbjct: 806 EKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQ 865

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D SH Q +EI+  LDE+ R++    YVP T  VL ++ E +K++ L  HSE+L
Sbjct: 866 VHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERL 925

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ FAL+ T     IRI KNLR+C DCH   K IS I N+EIVVRD  RFHHFK+
Sbjct: 926 ALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKN 980



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 149/289 (51%), Gaps = 3/289 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN++T   +L A    G+L  G+S+H  V K+ F  D+ V N LV MY    G +  G K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK-NGCVHDGTK 471

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +++ M +RD +SW+A + G    G+    + +F  M   G  P+  T +++L +C+ L  
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +  G+ V + I K  ++ +  +C ALIDM+AKC  ++ A   F  ++ R + +WT +I  
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A   +G +A+  F +M + GV P++    G LS CS    ++ G++   SM    G + 
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ-LHSMVFKSGHVS 650

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +     +VDM  + G ++EA    + + I  + I W T+I      G+
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQ 698



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 3/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN+FT    LKAC+    L+LGK +H    K     D+ V + LV +Y  C G
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC-G 262

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IEL  K+F  M E++ V+W+ ++ GYA+ G  T  + LF  M    V  +E T+ TVL 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +   L+ G+ + S I K     +  +   L+DM++KCG    A+ +F+++    IV 
Sbjct: 323 GCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV 382

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I  L   G+  E++ LF  M      P+      LLSA ++ G +  G+     + 
Sbjct: 383 WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVW 442

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             +G    +     +V M  ++G V +  +  + M ++ + I W   +S 
Sbjct: 443 K-YGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 152/287 (52%), Gaps = 9/287 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L+ CA    L + K++HG ++K     D H+  +LV++Y  C       R V  +M
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYS-AYARLVLAKM 173

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            +RD VSW+A+I G    G + D+I LF++MQ  G+ P+E T+ T L AC+   AL++GK
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 133 WV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            +  ++F    +++  VG  +AL+D++AKCG+++ A K+F  M  +  V+W  ++ G A 
Sbjct: 234 QMHAQAFKLGLLLDLFVG--SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
            G     + LF  M+E  V  ++     +L  C++   + +G +   S+    G     E
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGN-E 349

Query: 251 HYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             GC +VDM  + G   +A    + +  + + ++W  LI+    +G+
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQ 395



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 1/234 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V  N+FT   VLK CA   +L  G+ +H  ++K  +  +  +   LV MY  C  
Sbjct: 305 MMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGL 364

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+    VF  + + D V WSA+I    + G S ++I LF  M++    P++ T+ ++LS
Sbjct: 365 AID-AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T+ G L+ G+ + + + K      V + NAL+ M+ K G V    KL+ SM  R ++S
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           W + ++GL   G     + +F  MLE G  P+   F+ +L +CS    V  GR+
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ 537


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/504 (40%), Positives = 303/504 (60%), Gaps = 31/504 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML+ G  P++ T    + A A + DL  GK  HG V++        + N ++ MY  C  
Sbjct: 324 MLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGK 383

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G +E   +VF+++ ER++V W+ MI G  + 
Sbjct: 384 PEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQK 443

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
            L  DAI+LFR+MQ  G+  D +TM+ + SAC  LGA E+ KWV ++IEK  +   + L 
Sbjct: 444 SLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLN 503

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            AL+DMFA+CGD   A+++F  M  R + +WT+ I  +AM G G  A  LF +ML  GV 
Sbjct: 504 TALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD V FV +L+ACSH G V++G   F S+  D GI P+IEHYGCMVD+L R+G ++EA +
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFD 622

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MP+E N ++W +L++AC     +++A    +R+    P     +VLLS+IYA   +
Sbjct: 623 LIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGK 682

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R  + ++G++K+PGS+ ++++  I+EF  GD+SH +   I  ML EM  +   
Sbjct: 683 WTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSD 742

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           AG++P  S VLLD++E++KE  L++HSEKLAIAF L+ T    PIR+VKNLR+C+DCHS 
Sbjct: 743 AGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSF 802

Query: 451 TKFISKIYNREIVVRDRHRFHHFK 474
            K  S IYNREI+VRD +RFH F+
Sbjct: 803 AKMASIIYNREIIVRDNNRFHFFR 826



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 170/320 (53%), Gaps = 32/320 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV+PN +T+PFVL  C  I     G  VHG+V+K    +D+ +QN L+H Y  C G
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAEC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ G KVF+ MSER+ VSW+++I GYAR     +A+ LF +M  +G+ P  +TMV V+S
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVIS 240

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L  L++G+ V ++I +  +  +  + NAL+DM+ KCG +D A +LF     R +V 
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL 300

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLV 229
           + ++++  A  G   EA+A+ +EML+ G  PD V  +  +SA +           H  ++
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360

Query: 230 DKGREYFDSMKN-------------------DFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
             G E +DS+ N                   D      +  +  +     R+G V+ A E
Sbjct: 361 RNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWE 420

Query: 271 FIQKMPIEANPIIWRTLISA 290
              ++P E N + W T+IS 
Sbjct: 421 VFNQIP-ERNAVFWNTMISG 439



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 8/271 (2%)

Query: 62  IELGRKVF-----DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           ++  RK F     D  S+      +++I GY+  GL  +AI L+ +M + GV P+  T  
Sbjct: 76  LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VLS CT + A   G  V   + K  +   V + N LI  +A+CG +D   K+F  M+ R
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSWTS+I G A   R  EAV+LF EM+EAG+ P  V  V ++SAC+    +D G E  
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERV 254

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +   + G+         +VDM  + G +  A     +  ++ N +++ T++S    +G 
Sbjct: 255 CAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC-VDRNLVLYNTILSNYARQGL 313

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
            + A +I   ++   P       +LS I A 
Sbjct: 314 AREALAILDEMLQQGP-RPDRVTMLSAISAS 343


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/507 (39%), Positives = 304/507 (59%), Gaps = 35/507 (6%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           +  + P++F+    L ACA +  L+ GK +HG +++  F     V N L+ MY    GG+
Sbjct: 233 DTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAK-SGGV 291

Query: 63  ELGRKV---------------------------------FDEMSERDSVSWSAMIGGYAR 89
           E+ R++                                 F+ + + D V+W+AMI GY +
Sbjct: 292 EIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQ 351

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            GL+ DAI++F+ M   G  P+  T+  +LSA + + +L  GK + +   +     S  +
Sbjct: 352 NGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSV 411

Query: 150 CNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
            NAL  M+AK G ++ A K+F  +   R  VSWTS+I  LA HG G EA+ LFE+ML  G
Sbjct: 412 GNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLG 471

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD + +VG+LSAC+H GLV++GR YFD MKN   I P + HY CMVD+  R+G ++EA
Sbjct: 472 IKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEA 531

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           ++F++ MP+E + I W +L+S+C     + LA+   +RL+  EP +   Y  L+++Y+  
Sbjct: 532 YKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSC 591

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            +W+   KIR++M  RG+KK  G + +++ N+ + F   D  H Q  EIY+M+D++ +++
Sbjct: 592 GKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEI 651

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK G+ P T  VL D+  E K+  L  HSEKLAIAF ++ TP  T +RI+KNLRVCNDCH
Sbjct: 652 KKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCH 711

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A KFISK+ +REI+VRD  RFHHFKD
Sbjct: 712 NAIKFISKLVDREIIVRDATRFHHFKD 738



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 159/361 (44%), Gaps = 69/361 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P +FT   VL +CA  G   +GK VH  V+K      + V N+L++MY    G
Sbjct: 98  MVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT-G 156

Query: 61  GIELGRKVFDEM-------------------------------SERDSVSWSAMIGGYAR 89
            +++ + VFD M                               SERD VSW++MI G  +
Sbjct: 157 DLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQ 216

Query: 90  LGLSTDAIDLFRQ-MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            G   +A+  F   ++ + + PD  ++ + LSAC +L  L  GK +  +I + M + S  
Sbjct: 217 HGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGA 276

Query: 149 LCNALIDMFAKC---------------------------------GDVDKALKLFRSMNG 175
           + NALI M+AK                                  GD+  A ++F S+  
Sbjct: 277 VGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKD 336

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
             +V+WT++I G   +G   +A+ +F+ M+  G  P+      +LSA S    ++ G++ 
Sbjct: 337 PDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQI 396

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           +  ++++   + P + +   +  M  ++G +  A +    +    + + W ++I A    
Sbjct: 397 HASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454

Query: 295 G 295
           G
Sbjct: 455 G 455



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  Y   +G +E   +VFD +  RDSVSW+ +I GY ++G   DAI +F  M    V
Sbjct: 45  NTILSGYAK-QGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKV 103

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK--------- 159
            P + T+  VL++C   G+  +GK V SF+ K  ++  V + N+L++M+AK         
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163

Query: 160 ----------------------CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
                                 CG VD AL  F  ++ R IVSW S+IAG   HG   EA
Sbjct: 164 VFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223

Query: 198 VALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGRE----YFDSMKNDFGIIPKIEHY 252
           +  F  +L +  + PD  +    LSAC++   +  G++       +M +  G +      
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN---- 279

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPI-EANPIIWRTLISACCARGELKLAESITKRL 307
             ++ M  +SG V+ A   I++  I + + I +  L++     G++  A  I   L
Sbjct: 280 -ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSL 334



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-------------- 191
           SV L N L++++AK G    A  LF  M  +T  SW ++++G A                
Sbjct: 9   SVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 192 -----------------GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
                            GR  +A+ +F +M++  V P       +L++C+  G    G++
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS--ACC 292
              S     G+   +     +++M  ++G +K A     +M +  N   W  +IS    C
Sbjct: 129 -VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMISLHMNC 186

Query: 293 ARGELKLAE 301
            R +L LA+
Sbjct: 187 GRVDLALAQ 195



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 50/194 (25%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+  TY  VL AC            HG                         G
Sbjct: 467 MLTLGIKPDHITYVGVLSAC-----------THG-------------------------G 490

Query: 61  GIELGRKVFDEMSERDSVS-----WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
            +E GR  FD M     +      ++ M+  + R GL  +A      M +    PD I  
Sbjct: 491 LVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPME---PDVIAW 547

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            ++LS+C     +++ K     +     N S G  +AL ++++ CG  D A K+ + M  
Sbjct: 548 GSLLSSCKVYKNVDLAKVAAERLLLIEPNNS-GAYSALANVYSSCGKWDDAAKIRKLMKA 606

Query: 176 RTI-----VSWTSV 184
           R +     +SW  +
Sbjct: 607 RGVKKEQGLSWVQI 620


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/464 (43%), Positives = 304/464 (65%), Gaps = 8/464 (1%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEMS 73
             A A + D  +  S+H  + K  F  +  V NT++  Y   +GG   +E+ RKVFD M 
Sbjct: 59  FSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYA--KGGSRDLEVARKVFDTM- 115

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTVLSACTDLGALEVG 131
           ERD VSW++MI  YA+ G+S +AI L+ +M     G+  + + +  VL AC   GA++ G
Sbjct: 116 ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 175

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K + + + +  +  +V +  +++DM++KCG V+ A + FR +  + I+SW+++I G  MH
Sbjct: 176 KHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 235

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           GRG EA+ +F EM  +G+ P+ + F+ +L+ACSH GL+D+GR ++++MK +FGI   +EH
Sbjct: 236 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 295

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           YGCMVD+L R+G + EA+  I++M ++ +  IW  L+SAC     ++LAE   KRL   +
Sbjct: 296 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 355

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSH 371
             +   YVLLS+IYA+   W+   +IR ++  R ++K PG +  EL  +IY F  GDKSH
Sbjct: 356 ASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 415

Query: 372 HQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPP 431
            Q  EIY  L+++  +M++AGYVP T  VL D++EE+KE AL  HSEKLA+AFAL+ + P
Sbjct: 416 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 475

Query: 432 GTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + I I+KNLRVC+DCH+A KFI+KI  REI++RD  RFHHFKD
Sbjct: 476 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKD 519



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N      VL ACA  G +  GK +H  V++    ++++V  ++V MY  C G +E+
Sbjct: 151 GIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKC-GRVEM 209

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F ++ E++ +SWSAMI GY   G   +A+++F +M+ SG+ P+ IT ++VL+AC+ 
Sbjct: 210 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 269

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G L+ G+ W  +  ++  +   V     ++D+  + G +D+A  L + M  +   + W 
Sbjct: 270 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 329

Query: 183 SVIAGLAMH 191
           ++++   +H
Sbjct: 330 ALLSACRIH 338



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTVLSAC 122
            R+ FDE+ + + V  +AM  GY R  L   +++LFR M    S    DE   +   SA 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG--DVDKALKLFRSMNGRTIVS 180
             +    V   + + I K    R+ G+ N ++D +AK G  D++ A K+F +M  R +VS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVS 121

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           W S+IA  A +G   EA+ L+ +ML    G+  + VA   +L AC+H G +  G+   + 
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +    G+   +     +VDM  + GRV+ A    +K+  E N + W  +I+
Sbjct: 182 VVR-MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMIT 230


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/465 (43%), Positives = 304/465 (65%), Gaps = 8/465 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEM 72
              A A + D  +  S+H  + K  F  +  V NT++  Y   +GG   +E+ RKVFD M
Sbjct: 204 AFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYA--KGGSRDLEVARKVFDTM 261

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTVLSACTDLGALEV 130
            ERD VSW++MI  YA+ G+S +AI L+ +M     G+  + + +  VL AC   GA++ 
Sbjct: 262 -ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 320

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK + + + +  +  +V +  +++DM++KCG V+ A + FR +  + I+SW+++I G  M
Sbjct: 321 GKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGM 380

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           HGRG EA+ +F EM  +G+ P+ + F+ +L+ACSH GL+D+GR ++++MK +FGI   +E
Sbjct: 381 HGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE 440

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           HYGCMVD+L R+G + EA+  I++M ++ +  IW  L+SAC     ++LAE   KRL   
Sbjct: 441 HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFEL 500

Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
           +  +   YVLLS+IYA+   W+   +IR ++  R ++K PG +  EL  +IY F  GDKS
Sbjct: 501 DASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKS 560

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
           H Q  EIY  L+++  +M++AGYVP T  VL D++EE+KE AL  HSEKLA+AFAL+ + 
Sbjct: 561 HPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSV 620

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           P + I I+KNLRVC+DCH+A KFI+KI  REI++RD  RFHHFKD
Sbjct: 621 PRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKD 665



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N      VL ACA  G +  GK +H  V++    ++++V  ++V MY  C G +E+
Sbjct: 297 GIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKC-GRVEM 355

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F ++ E++ +SWSAMI GY   G   +A+++F +M+ SG+ P+ IT ++VL+AC+ 
Sbjct: 356 ASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSH 415

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G L+ G+ W  +  ++  +   V     ++D+  + G +D+A  L + M  +   + W 
Sbjct: 416 AGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWG 475

Query: 183 SVIAGLAMH 191
           ++++   +H
Sbjct: 476 ALLSACRIH 484


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/477 (44%), Positives = 302/477 (63%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   +  + FT+  V KACA +  L  G ++H   +   FG D  V   LV +Y  C G
Sbjct: 96  LLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKC-G 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + RK+FD + +R  V+W+AMI GY + GL+   I ++++MQ +   PD +T V  LS
Sbjct: 155 QLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLS 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GAL++G+ VE  +  + ++ SV L +AL++M+A+CG VDKA + F ++  R +V+
Sbjct: 215 ACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVT 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+IAG  MHG G EA+ LF  M   G PP+ V FV +LSAC+H GLV +GR+ F  MK
Sbjct: 275 WTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMK 334

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-MPIEANPIIWRTLISACCARGELKL 299
             +G++P++EHY  MVDM  R+G + EA +FI   MP E  P +W  ++ AC       L
Sbjct: 335 RVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNL 394

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
              + +RLI  EP + S +VLLS+IYA   +     K+R  M KR +KK  G +LIEL  
Sbjct: 395 GVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGG 454

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             + F  G+KSH Q+ EIY  L+E+  ++  AGY+P T  VL ++ EE++E AL  HSEK
Sbjct: 455 TSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSEK 514

Query: 420 LAIAFALLKT-PPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A+ L+ +    TPIR++KNLR+C DCH A KF+S + NREIVVRD+HRFHHFKD
Sbjct: 515 LAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKD 571


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/494 (41%), Positives = 307/494 (62%), Gaps = 24/494 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN  T   V+ AC      +  +S+HG  +K  F +D +VQN L+ MY S  G +++
Sbjct: 395 GLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMY-SRMGKMDI 453

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-----------------SG 107
              +FD M  RD VSW+ MI GY   G  ++A+ L  +MQ                    
Sbjct: 454 SETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGP 513

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
             P+ IT++TVL  C  L A+  GK + ++  + M+   + + +AL+DM+AKCG ++ + 
Sbjct: 514 YKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 573

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAG----VPPDDVAFVGLLSA 222
           ++F  M  + +++W  +I    MHG+G EA+ LF+ M+ EAG      P++V F+ + +A
Sbjct: 574 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 633

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH GL+ +G   F  MK+D G+ P  +HY C+VD+L R+G+++EA+E +  MP E + +
Sbjct: 634 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 693

Query: 283 -IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
             W +L+ AC     ++L E   K L+  EP   S+YVLLS+IY+    W K  ++R+ M
Sbjct: 694 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753

Query: 342 DKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL 401
            + G+KK PG + IE  +E+++F+ GD SH QS++++  L+ +  KM+K GYVP TS VL
Sbjct: 754 RQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL 813

Query: 402 LDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNRE 461
            +++E++KE+ L  HSEKLAIAF +L TPPGT IR+ KNLRVCNDCH+ATKFISKI  RE
Sbjct: 814 HNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMERE 873

Query: 462 IVVRDRHRFHHFKD 475
           I+VRD  RFHHFK+
Sbjct: 874 IIVRDVRRFHHFKE 887



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCE 59
           M   G  P+ F +P VLKA +G+ DL  G+ +H A +KF +G   + V NTLV+MYG C 
Sbjct: 83  MTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKC- 141

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           GGI    KVFD +++RD VSW++ I    R      A++ FR MQ+  +     T+V+V 
Sbjct: 142 GGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVA 201

Query: 120 SACTDLG---ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            AC++LG    L +GK +  +   ++ ++     NAL+ M+AK G VD +  LF S   R
Sbjct: 202 LACSNLGVMHGLRLGKQLHGY-SLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDR 260

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSW ++I+  +   R  EA+A F  M+  GV  D V    +L ACSH   +D G+E  
Sbjct: 261 DMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIH 320

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +  +  +I        +VDM C   +V+        + +     +W  +IS     G
Sbjct: 321 AYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI-LGRRIELWNAMISGYARNG 378



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 161/329 (48%), Gaps = 24/329 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCE 59
           M+  GV  +  T   VL AC+ +  L++GK +H  VL+     ++  V + LV MY +C 
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTV 118
             +E GR+VFD +  R    W+AMI GYAR GL   A+ LF +M +++G+ P+  TM +V
Sbjct: 348 Q-VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASV 406

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC    A    + +  +  K        + NAL+DM+++ G +D +  +F SM  R  
Sbjct: 407 MPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDR 466

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM---------------LEAGVP--PDDVAFVGLLS 221
           VSW ++I G  + GR   A+ L  EM                E G P  P+ +  + +L 
Sbjct: 467 VSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLP 526

Query: 222 ACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            C+    + KG+E +  +++N   +   I     +VDM  + G +  +     +MP   N
Sbjct: 527 GCAALAAIAKGKEIHAYAIRN--MLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKN 583

Query: 281 PIIWRTLISACCARGELKLAESITKRLIG 309
            I W  LI AC   G+ + A  + K ++ 
Sbjct: 584 VITWNVLIMACGMHGKGEEALELFKNMVA 612



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           R + SW   +    R     +AI  + +M +SG  PD      VL A + L  L+ G+ +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 135 ESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
            +   K    + SV + N L++M+ KCG +    K+F  +  R  VSW S IA L    +
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR--EYFDSMKNDFGIIPKIEH 251
             +A+  F  M    +       V +  ACS+ G++   R  +         G      +
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN 234

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              M  M  + GRV ++    +   ++ + + W T+IS+
Sbjct: 235 NALMA-MYAKLGRVDDSKALFESF-VDRDMVSWNTMISS 271


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 301/476 (63%), Gaps = 8/476 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI---HVQNTLVHMYGSCEGG 61
           G   ++ T   +L AC  + DL +GK +HG V++      +    + N+++ MY +CE  
Sbjct: 220 GFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCES- 278

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   RK+F+ +  +D VSW+++I GY + G +  A++LF +M + G  PDE+T+++VL+A
Sbjct: 279 VSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAA 338

Query: 122 CTDLGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           C  + AL +G  V+S++ K+  +VN  VG   ALI M+A CG +  A ++F  M  + + 
Sbjct: 339 CNQISALRLGATVQSYVVKRGYVVNVVVG--TALIGMYANCGSLVCACRVFDEMPEKNLP 396

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           + T ++ G  +HGRG EA+++F EML  GV PD+  F  +LSACSH GLVD+G+E F  M
Sbjct: 397 ACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKM 456

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ + P+  HY C+VD+L R+G + EA+  I+ M ++ N  +W  L+SAC     +KL
Sbjct: 457 TRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKL 516

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A    ++L    P   S YV LS+IYA   RWE    +R ++ KR ++K P  + +EL+ 
Sbjct: 517 AVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNK 576

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F  GD SH QS +IY  L ++  ++KKAGY P TS VL D+ EE KE  L  HSE+
Sbjct: 577 MVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSER 636

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AFAL+ T PGT IRI KNLRVC DCH+  K ISK+ NREI++RD  RFHHF+D
Sbjct: 637 LALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRD 692



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 6/312 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G  P+ FTYPFVLKAC  +    +G+ VH  V+     +D++V N+++ MY    G
Sbjct: 115 MLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKF-G 173

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M  RD  SW+ M+ G+ + G +  A ++F  M+  G   D  T++ +LS
Sbjct: 174 DVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLS 233

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVG---LCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           AC D+  L+VGK +  ++ +   +  V    L N++IDM+  C  V  A KLF  +  + 
Sbjct: 234 ACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKD 293

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSW S+I+G    G   +A+ LF  M+  G  PD+V  + +L+AC+    +  G     
Sbjct: 294 VVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT-VQ 352

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           S     G +  +     ++ M    G +  A     +MP E N      +++     G  
Sbjct: 353 SYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMP-EKNLPACTVMVTGFGIHGRG 411

Query: 298 KLAESITKRLIG 309
           + A SI   ++G
Sbjct: 412 REAISIFYEMLG 423



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 4/249 (1%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           + ++   L   Y  C G +   + +FD++  ++S  W++MI GYA     + A+ L+ +M
Sbjct: 57  NTYLATKLAACYAVC-GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKM 115

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              G  PD  T   VL AC DL   E+G+ V + +    +   V + N+++ M+ K GDV
Sbjct: 116 LHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDV 175

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A  +F  M  R + SW ++++G   +G    A  +F +M   G   D    + LLSAC
Sbjct: 176 EAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235

Query: 224 SHCGLVDKGREY--FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
                +  G+E   +     + G +        ++DM C    V  A +  + + ++ + 
Sbjct: 236 GDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVK-DV 294

Query: 282 IIWRTLISA 290
           + W +LIS 
Sbjct: 295 VSWNSLISG 303



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 3/191 (1%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKL 169
           D +   T+L + T+  +L     + + +     + R+  L   L   +A CG +  A  +
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  +  +    W S+I G A +     A+ L+ +ML  G  PD+  +  +L AC    L 
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           + GR+   ++    G+   +     ++ M  + G V+ A     +M +  +   W T++S
Sbjct: 141 EMGRK-VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVR-DLTSWNTMMS 198

Query: 290 ACCARGELKLA 300
                GE + A
Sbjct: 199 GFVKNGEARGA 209


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G  PN +T+  +L +C+ + D++ G+ VH  ++K Q  D+  V   L+ MY  C  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E     F+ +S RD  +W+ +I  YA+      A++ FRQMQ  GV P+E T+   LS
Sbjct: 567 -LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS 625

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ L +LE G+ + S + K      + + +AL+DM+AKCG +++A  LF ++  R  ++
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA 685

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G A +G+G +A+  F  ML+ G+ PD V F G+LSACSH GLV++G+E+F+SM 
Sbjct: 686 WNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMY 745

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DFGI P ++H  CMVD+L R G+  E  +FIQKM +  N +IW T++ A      L L 
Sbjct: 746 RDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLG 805

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L   +P  ES+Y+LLS+I+A   RW+   ++R +M  +G+KK PG + +E + +
Sbjct: 806 EKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQ 865

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D SH Q +EI+  LDE+ R++    YVP T  VL ++ E +K++ L  HSE+L
Sbjct: 866 VHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERL 925

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ FAL+ T     IRI KNLR+C DCH   K IS I N+EIVVRD  RFHHFK+
Sbjct: 926 ALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKN 980



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 149/289 (51%), Gaps = 3/289 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN++T   +L A    G+L  G+S+H  V K+ F  D+ V N LV MY    G +  G K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK-NGCVHDGTK 471

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +++ M +RD +SW+A + G    G+    + +F  M   G  P+  T +++L +C+ L  
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +  G+ V + I K  ++ +  +C ALIDM+AKC  ++ A   F  ++ R + +WT +I  
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A   +G +A+  F +M + GV P++    G LS CS    ++ G++   SM    G + 
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ-LHSMVFKSGHVS 650

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +     +VDM  + G ++EA    + + I  + I W T+I      G+
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQ 698



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 3/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN+FT    LKAC+    L+LGK +H    K     D+ V + LV +Y  C G
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC-G 262

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IEL  K+F  M E++ V+W+ ++ GYA+ G  T  + LF  M    V  +E T+ TVL 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +   L+ G+ + S I K     +  +   L+DM++KCG    A+ +F+++    IV 
Sbjct: 323 GCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVV 382

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I  L   G+  E++ LF  M      P+      LLSA ++ G +  G+     + 
Sbjct: 383 WSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVW 442

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             +G    +     +V M  ++G V +  +  + M ++ + I W   +S 
Sbjct: 443 K-YGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 152/287 (52%), Gaps = 9/287 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L+ CA    L + K++HG ++K     D H+  +LV++Y  C       R V  +M
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYS-AYARLVLAKM 173

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            +RD VSW+A+I G    G + D+I LF++MQ  G+ P+E T+ T L AC+   AL++GK
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 133 WV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            +  ++F    +++  VG  +AL+D++AKCG+++ A K+F  M  +  V+W  ++ G A 
Sbjct: 234 QMHAQAFKLGLLLDLFVG--SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
            G     + LF  M+E  V  ++     +L  C++   + +G +   S+    G     E
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGN-E 349

Query: 251 HYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             GC +VDM  + G   +A    + +  + + ++W  LI+    +G+
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQ 395



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 1/234 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V  N+FT   VLK CA   +L  G+ +H  ++K  +  +  +   LV MY  C  
Sbjct: 305 MMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGL 364

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+    VF  + + D V WSA+I    + G S ++I LF  M++    P++ T+ ++LS
Sbjct: 365 AID-AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T+ G L+ G+ + + + K      V + NAL+ M+ K G V    KL+ SM  R ++S
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           W + ++GL   G     + +F  MLE G  P+   F+ +L +CS    V  GR+
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ 537


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/477 (41%), Positives = 300/477 (62%), Gaps = 7/477 (1%)

Query: 5   GVSPNKFTYPFVLKACA----GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           G+  ++FTY FVLKAC      +  L  GK +H  +L+  +  +IHV  TL+ +Y    G
Sbjct: 174 GIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKF-G 232

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTV 118
            +     VF  M  ++ VSWSAMI  +A+  +   A++LF+ M +      P+ +TMV V
Sbjct: 233 SVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNV 292

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC  L ALE GK +  +I ++ ++  + + NALI M+ +CG++    ++F +M  R +
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDV 352

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S+I+   MHG G +A+ +FE M+  G  P  ++F+ +L ACSH GLV++G+  F+S
Sbjct: 353 VSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFES 412

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M + + I P +EHY CMVD+L R+ R+ EA + I+ M  E  P +W +L+ +C     ++
Sbjct: 413 MLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVE 472

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE  +  L   EP +  NYVLL+ IYA+   W +   + ++++ RG++K+PG + IE+ 
Sbjct: 473 LAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVK 532

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            ++Y FV  D+ + Q +EI+ +L ++  +MK  GYVP T+ VL D++EE+KE  +  HSE
Sbjct: 533 RKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSE 592

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+ T  G  IRI KNLR+C DCH+ TKFISK  NREI+VRD +RFHHFKD
Sbjct: 593 KLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKD 649



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 154/331 (46%), Gaps = 27/331 (8%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P + T+  ++ +CA    L+ G  VH  ++   F  D  +   L++MY    G I+  R
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYEL-GSIDRAR 133

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--- 123
           KVFDE  ER    W+A+    A +G   + +DL+ QM   G+  D  T   VL AC    
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSE 193

Query: 124 -DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +  L+ GK + + I +     ++ +   L+D++AK G V  A  +F +M  +  VSW+
Sbjct: 194 LSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 183 SVIAGLAMHGRGLEAVALFE-EMLEA-GVPPDDVAFVGLLSACSHCGLVDKG-------- 232
           ++IA  A +   ++A+ LF+  MLEA    P+ V  V +L AC+    +++G        
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYIL 313

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R   DS      I+P +     ++ M  R G +         M    + + W +LIS   
Sbjct: 314 RRGLDS------ILPVL---NALITMYGRCGEILMGQRVFDNMK-NRDVVSWNSLISIYG 363

Query: 293 ARGELKLAESITKRLI--GNEPMHESNYVLL 321
             G  K A  I + +I  G+ P + S   +L
Sbjct: 364 MHGFGKKAIQIFENMIHQGSSPSYISFITVL 394


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/473 (41%), Positives = 298/473 (63%), Gaps = 3/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN+FT+  VL +C G     LG+ +H  ++K  +   ++V ++L+ MY   +G
Sbjct: 150 MLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAK-DG 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +F  + ERD VS +A+I GYA+LGL  +A++LFR++Q  G+  + +T  +VL+
Sbjct: 209 KIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLT 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L AL+ GK V + + +  V   V L N+LIDM++KCG++  A ++F +++ RT++S
Sbjct: 269 ALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVIS 328

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           W +++ G + HG G E + LF  M+ E  V PD V  + +LS CSH GL DKG + ++D 
Sbjct: 329 WNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDM 388

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
                 + P  +HYGC+VDML R+GRV+ A EF++KMP E +  IW  L+ AC     L 
Sbjct: 389 TSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLD 448

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + E +  +L+  EP +  NYV+LS++YA   RWE    +R +M K+ + K PG + IELD
Sbjct: 449 IGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELD 508

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++ F   D SH + +E+   + E+  + K+AGYVP  S VL D++EE KE  L  HSE
Sbjct: 509 QVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSE 568

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           KLA+ F L+ TP   PIR++KNLR+C DCH+  K+ SKIY RE+ +RD++RFH
Sbjct: 569 KLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFH 621



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 3/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N   Y  VL  C     +  G+ VH  ++K  +   ++++  L+  Y  C+  +  
Sbjct: 53  GLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS-LRD 111

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD M ER+ VSW+AMI  Y++ G ++ A+ LF QM  SG  P+E T  TVL++C  
Sbjct: 112 ARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIG 171

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
                +G+ + S I K      V + ++L+DM+AK G + +A  +F+ +  R +VS T++
Sbjct: 172 SSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAI 231

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+G A  G   EA+ LF  +   G+  + V +  +L+A S    +D G++  + +     
Sbjct: 232 ISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS-E 290

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   +     ++DM  + G +  A      +  E   I W  ++      GE
Sbjct: 291 VPSYVVLQNSLIDMYSKCGNLTYARRIFDTLH-ERTVISWNAMLVGYSKHGE 341


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 292/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  +++T+  +L AC  +     GK +H  + +  + D++ V + LV MY  C  
Sbjct: 269 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRS 328

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L   VF  M+ R+ +SW+AMI GY +   S +A+  F +MQ+ G+ PD+ T+ +V+S
Sbjct: 329 -IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +L +LE G           + R + + NAL+ ++ KCG ++ A +LF  M+    VS
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT+++ G A  G+  E + LFE+ML  G+ PD V F+G+LSACS  GLV+KG +YFDSM+
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I+P  +HY CM+D+  RSGR KEA EFI++MP   +   W TL+S+C  RG +++ 
Sbjct: 508 KDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIG 567

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   + L+  +P + ++YVLL  ++A   +W +   +R  M  R +KK PG + I+  N+
Sbjct: 568 KWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNK 627

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   D+SH  S  IYE L+ +  KM + GY P  S VL D+ + DK   ++ HSEKL
Sbjct: 628 VHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKL 687

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P   PIRIVKNLRVC DCH+ATKFISKI  R+I+VRD  RFH F D
Sbjct: 688 AIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSD 742



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 165/339 (48%), Gaps = 34/339 (10%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  V P + T   ++   + + D  LG SVH  VL+  FG    V + LV MY    G I
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKM-GLI 197

Query: 63  ELGRKVFDEMS-------------------------------ERDSVSWSAMIGGYARLG 91
              R+VF EM                                +RDS++W+ M+ G  + G
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L  +A+D+FR+M+  GV  D+ T  ++L+AC  L A E GK + ++I +     +V + +
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGS 317

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           AL+DM++KC  +  A  +FR M  R I+SWT++I G   +    EAV  F EM   G+ P
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP 377

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           DD     ++S+C++   +++G + F  +    G++  I     +V +  + G +++AH  
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
             +M    + + W  L++     G+ K    + ++++ N
Sbjct: 437 FDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKMLVN 474



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 38/256 (14%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEIT---MVTVLSAC 122
           ++F  M ERD+VS++A+I G++  G    ++ L+R + +   V P  IT   M+ V SA 
Sbjct: 100 RLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASAL 159

Query: 123 TD--LG------ALEVGKWVESFIEKQMVN--------------------RSVGLCNALI 154
           +D  LG       L +G    +F+   +V+                    ++V + N LI
Sbjct: 160 SDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLI 219

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
               +C  ++ A  LF+ M  R  ++WT+++ GL  +G  LEA+ +F  M   GV  D  
Sbjct: 220 TGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQY 279

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML--CRSGRVKEAHEFI 272
            F  +L+AC      ++G++    +   +     +     +VDM   CRS R+ EA    
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEA--VF 336

Query: 273 QKMPIEANPIIWRTLI 288
           ++M    N I W  +I
Sbjct: 337 RRMTCR-NIISWTAMI 351



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGV 209
           NAL+   A    V    +LF SM  R  VS+ ++I G +  G    +V L+  +L E  V
Sbjct: 83  NALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESV 142

Query: 210 PPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            P  +    ++   S   L D+      +   ++  FG    +     +VDM  + G ++
Sbjct: 143 RPTRITLSAMIMVAS--ALSDRALGHSVHCQVLRLGFGAYAFVG--SPLVDMYAKMGLIR 198

Query: 267 EAHEFIQKMPIEANPII-WRTLIS 289
           +A    Q+M  EA  ++ + TLI+
Sbjct: 199 DARRVFQEM--EAKTVVMYNTLIT 220


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 298/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G++ +++T+  VL AC G+  L  GK +H  +++  +  ++ V + LV MY  C  
Sbjct: 261 MRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRS 320

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF  M+ ++ VSW+AM+ GY + G S +A+ +F  MQ +G+ PD+ T+ +V+S
Sbjct: 321 -VRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +L +LE G           +   + + NALI ++ KCG ++ + +LF  M+ R  VS
Sbjct: 380 SCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS 439

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++++G A  G+  E + LFE ML  G+ PD V F+ +LSACS  GLV++G++YF+SM 
Sbjct: 440 WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESML 499

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GIIP  +HY CM+D+  R+GR++EA  FI KMP   + I W TL+S+C   G  ++ 
Sbjct: 500 KDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIG 559

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   + L+  +P + + Y+LLS IYA   +W    ++R  M ++G +K PG + I+  ++
Sbjct: 560 KWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSK 619

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F   D+S   S +IY  L+++  KM + GYVP  S VL D+ + +K   LN HSEKL
Sbjct: 620 VYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKL 679

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL  P G PIR+VKNLRVC DCH+ATK+ISKI  REI+VRD  RFH FKD
Sbjct: 680 AIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKD 734



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 175/340 (51%), Gaps = 35/340 (10%)

Query: 1   MLEYGV-SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M++ GV + N+ T+  +L   +  G ++LG+ +HG ++KF FG  + V ++LV MY    
Sbjct: 128 MMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKM- 186

Query: 60  GGIELGRKVFDE-------------------------------MSERDSVSWSAMIGGYA 88
           G + +  +VFDE                               M ERDS+SW+ MI G  
Sbjct: 187 GLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLI 246

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + GL  +A+DLFR M+  G+  D+ T  +VL+AC  L AL+ GK + + I +   N +V 
Sbjct: 247 QNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVF 306

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + +AL+DM+ KC  V  A  +F+ M  + +VSWT+++ G   +G   EAV +F +M   G
Sbjct: 307 VGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNG 366

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PDD     ++S+C++   +++G + F       G+I  I     ++ +  + G ++++
Sbjct: 367 IEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDS 425

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           ++   +M    + + W  L+S     G+      + +R++
Sbjct: 426 NQLFDEMSFR-DEVSWTALVSGYAQFGKANETIDLFERML 464



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 39/315 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
            +P  F Y  ++ A + +G++   + V   + +     +    NT++  Y S  G +   
Sbjct: 36  TNPETFLYNNLINAYSKLGNITYARHVFDKMPQ----PNSFSWNTMLSAY-SKSGDLSTM 90

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTD 124
           +++F  M  RD VSW+++I GY   G   +A+  +  M   GV   + IT  T+L   + 
Sbjct: 91  QEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSS 150

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL----------------- 167
            G +++G+ +   I K      V + ++L+DM+AK G V  A                  
Sbjct: 151 QGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTM 210

Query: 168 --------------KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                         +LF  M  R  +SWT++I GL  +G   EA+ LF +M + G+  D 
Sbjct: 211 ITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQ 270

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
             F  +L+AC     + +G+E   ++    G    +     +VDM C+   V+ A    +
Sbjct: 271 YTFGSVLTACGGLRALKEGKE-IHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFK 329

Query: 274 KMPIEANPIIWRTLI 288
           +M    N + W  ++
Sbjct: 330 RMA-NKNVVSWTAML 343



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV- 209
           N ++  ++K GD+    ++F  M  R  VSW S+I+G   +G  +EAV  +  M++ GV 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
             + + F  +L   S  G VD GR+    +   FG    +     +VDM  + G V  A 
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVK-FGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELK 298
           +   ++  E N +++ T+I+     G +K
Sbjct: 194 QVFDEVQ-ERNVVMYNTMITGLLRSGMVK 221


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 292/505 (57%), Gaps = 36/505 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYGSCEGG 61
           V  ++FT+  VL ACA  G    GKSVHG + + Q        + V N LV +Y  C G 
Sbjct: 290 VPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKC-GN 348

Query: 62  IELGRKVFDEMSERDSVSWSA-------------------------------MIGGYARL 90
           I + R++FD M  +D VSW+                                M+ GY   
Sbjct: 349 IAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G S DA+ LF +M+   V P + T    +SAC +LG+L+ GK +   + +     S    
Sbjct: 409 GFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAG 468

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI M+A+CG V +A  +F  M     VSW ++I+ L  HG G EA+ LF+ M+  G+ 
Sbjct: 469 NALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD ++F+ +L+AC+H GLVD+G +YF+SMK DFGIIP  +HY  ++D+L R+GR+ EA +
Sbjct: 529 PDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARD 588

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MP E  P IW  ++S C   G+++L      +L    P H+  Y+LLS+ Y+   R
Sbjct: 589 LIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGR 648

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R++M  RG+KK PG + IE  N+++ FV GD  H ++ ++Y+ L+ +G +M+K
Sbjct: 649 WVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRK 708

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GYVP T  VL D+    KE  L  HSE+LA+ F LLK PPG  + ++KNLR+C+DCH+ 
Sbjct: 709 LGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAV 768

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
             F+SK   REIVVRD  RFHHFKD
Sbjct: 769 MMFMSKAVGREIVVRDVRRFHHFKD 793



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 72/372 (19%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG--GIE 63
           P+ +++  +L A   + ++++     +  +VLK   G  + V N LV +Y  CE      
Sbjct: 155 PDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATR 214

Query: 64  LGRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGL 92
             RKV DEM ++D+++W+                               AMI GY   G+
Sbjct: 215 DARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGM 274

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVG 148
             +A +LFR+M +  V  DE T  +VLSAC + G    GK V   I +   N     ++ 
Sbjct: 275 VVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALP 334

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA------------------- 189
           + NAL+ +++KCG++  A ++F +M  + +VSW ++++G                     
Sbjct: 335 VNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 190 -----------MHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
                      +HG   E A+ LF  M    V P D  + G +SAC   G +  G++   
Sbjct: 395 ELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHG 454

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +    G          ++ M  R G VKEA+     MP   + + W  +ISA    G  
Sbjct: 455 HLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGHG 512

Query: 298 KLAESITKRLIG 309
           + A  +  R++ 
Sbjct: 513 REALELFDRMVA 524



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 44/283 (15%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
            +LV  Y +  G +      FD + +  RD+V  +A+I  YAR   +  A+ +FR +  S
Sbjct: 92  TSLVAAYAAA-GRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 107 G-VCPDEITMVTVLSACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAKC--- 160
           G + PD+ +   +LSA   L  + V     ++  + K      + + NAL+ ++ KC   
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 161 -------------------------------GDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
                                          GDV  A  +F  ++ +  V W ++I+G  
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY---FDSMKNDFGII 246
             G  +EA  LF  M+   VP D+  F  +LSAC++ G    G+        ++ +F   
Sbjct: 271 HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPE 330

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             +     +V +  + G +  A      M    + + W T++S
Sbjct: 331 AALPVNNALVTLYSKCGNIAVARRIFDNMK-SKDVVSWNTILS 372


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/468 (41%), Positives = 295/468 (63%), Gaps = 1/468 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   +   D+  GK +HG V++     D+++ ++LV MY      IE  
Sbjct: 238 LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK-SARIEDS 296

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  +  RD +SW++++ GY + G   +A+ LFRQM  + V P  +   +V+ AC  L
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  ++ +     ++ + +AL+DM++KCG++  A K+F  MN    VSWT++I
Sbjct: 357 ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG G EAV+LFEEM   GV P+ VAFV +L+ACSH GLVD+   YF+SM   +G+
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             ++EHY  + D+L R+G+++EA+ FI KM +E    +W TL+S+C     L+LAE + +
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           ++   +  +   YVL+ ++YA   RW++  K+R  M K+G++K P  + IE+ N+ + FV
Sbjct: 537 KIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFV 596

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH    +I E L  +  +M+K GYV  TS VL D++EE K + L  HSE+LA+AF 
Sbjct: 597 SGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 656

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           ++ T PGT IR+ KN+R+C DCH A KFISKI  REI+VRD  RFHHF
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHF 704



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 161/324 (49%), Gaps = 39/324 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+   +P VLK+C  + DL  G+SVHG +++     D++  N L++MY    G
Sbjct: 96  MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155

Query: 61  -----------------------------------GIELGRKVFDEMSERDSVSWSAMIG 85
                                              GI+  R+VF+ M  +D VS++ +I 
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GYA+ G+  DA+ + R+M  + + PD  T+ +VL   ++   +  GK +  ++ ++ ++ 
Sbjct: 216 GYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS 275

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
            V + ++L+DM+AK   ++ + ++F  +  R  +SW S++AG   +GR  EA+ LF +M+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGR 264
            A V P  VAF  ++ AC+H   +  G++     ++  FG    I     +VDM  + G 
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGN 393

Query: 265 VKEAHEFIQKMPIEANPIIWRTLI 288
           +K A +   +M +  + + W  +I
Sbjct: 394 IKAARKIFDRMNV-LDEVSWTAII 416



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V P    +  V+ ACA +  L+LGK +HG VL+  FG +I + + LV MY  C G
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC-G 392

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK+FD M+  D VSW+A+I G+A  G   +A+ LF +M+  GV P+++  V VL+
Sbjct: 393 NIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 452

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ +G + E   +  S  +   +N+ +    A+ D+  + G +++A      M      
Sbjct: 453 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG 512

Query: 180 S-WTSVIAGLAMH 191
           S W+++++  ++H
Sbjct: 513 SVWSTLLSSCSVH 525



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 38/276 (13%)

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F  +     ++W ++I  +    L + A+  F +M+ SG CPD     +VL +CT +  L
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAK-----------------------CGD--- 162
             G+ V  FI +  ++  +   NAL++M+AK                        GD   
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 163 ----------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
                     +D   ++F  M  + +VS+ ++IAG A  G   +A+ +  EM    + PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
                 +L   S    V KG+E    +    GI   +     +VDM  +S R++++    
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            ++    + I W +L++     G    A  + ++++
Sbjct: 301 SRLYCR-DGISWNSLVAGYVQNGRYNEALRLFRQMV 335


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 290/479 (60%), Gaps = 31/479 (6%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC----------------------------- 58
           LG  VH   +K     D++V+N L H YG C                             
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207

Query: 59  --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G +   R+VF+EM  RD VSWS ++GGY + G    A+ +FR M   GV  +E  +V
Sbjct: 208 VRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVV 267

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T LSA   +G LE G++V   +++  +  SV +  AL+DMF+KCG V  A ++F  M  R
Sbjct: 268 TALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR 327

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W ++I GLA HG G +AV LF   L+ G+ P D+ FVG+L+ACS CGLV +GR YF
Sbjct: 328 DVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYF 387

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             M + + I P++EHYGCMVD+L R+G V EA E I+ M I  +P++W T++SAC     
Sbjct: 388 KLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNL 447

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + L  ++  +LI  EP H+ +YVLL+ IYAK  +W++  ++R++M  RG  K  G +L+E
Sbjct: 448 VDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLME 507

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
               +++F+ GD  H  S +IY MLD + R++  AGYVP  S VL DI +E+K  A+  H
Sbjct: 508 AQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVH 567

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIA+  + T  G+PIRIVKNL+VC DCH  +K ++K++NREI+VRD  RFHH K+
Sbjct: 568 SERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKE 626


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/476 (40%), Positives = 299/476 (62%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++ +  +  F +K+C     L  G  VH  + K     D  +   ++ +Y  C+ 
Sbjct: 95  MRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQR 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV-C-PDEITMVTV 118
           G +   KVFDEM  RD+V+W+ MI    R   + DA+ LF  MQ S   C PD++T + +
Sbjct: 155 GGD-ACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLL 213

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC  L ALE G+ +  +I ++    ++ LCN+LI M+++CG +DKA ++F+ M  + +
Sbjct: 214 LQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNV 273

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW+++I+GLAM+G G EA+  FEEML  GV PDD  F G+LSACS+ G+VD+G  +F  
Sbjct: 274 VSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHR 333

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  +FG+ P + HYGCMVD+L R+G + +A++ I  M ++ +  +WRTL+ AC   G + 
Sbjct: 334 MSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVT 393

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E +   LI  +     +YVLL +IY+    WEK  ++R++M  + ++  PG + IEL 
Sbjct: 394 LGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELK 453

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++EFV  D SH +++EIYE LDE+  +++ AGYV   S  L  +++++K   L+ HSE
Sbjct: 454 GAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSE 513

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF +L TPPGT +R+  NLRVC DCH+  K  S +YNR++V+RD +RFHHF+
Sbjct: 514 KLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFR 569


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 305/509 (59%), Gaps = 35/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V  N +T+PF+L+AC  +  +     VHG V+K  FG D+   N L+H+Y  C G
Sbjct: 79  MLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALC-G 137

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR------------------------------- 89
            I   R++FD + ERD+VSW+ MI GY +                               
Sbjct: 138 EIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVE 197

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G S +A+ L  +MQ +G   D + + ++L+AC +LGAL+ G+W+  ++    V+    +
Sbjct: 198 AGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI 257

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
             AL++M+ KCGD+++AL +F  + G  + +  WT++I G A+HGRG+EA+  F  M   
Sbjct: 258 GCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRRE 317

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P+ + F  +L ACS+ GLV++G+E F SMK  + + P IEHYGCMVD+L RSGR+ E
Sbjct: 318 GIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDE 377

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A E I+KMP++ + +IW  L+ AC    +  L   +   L+  +  H   Y+ L+ I A 
Sbjct: 378 AKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAA 437

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
             +W++  ++R  M   G+   PG + + L+  ++EF+ G + H Q ++I   L ++  +
Sbjct: 438 EGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAER 497

Query: 388 MKK-AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           +++  GY P T ++LLD+  E+KE A+ +HSEKLAIAF L+ T PGT IR++KNLR+C D
Sbjct: 498 LRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRD 557

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+  K +S+IY+REI++RDR RFHHF+D
Sbjct: 558 CHTVAKLVSQIYSREIIMRDRVRFHHFRD 586



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 37/270 (13%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   ++VF+ ++  ++  W+A+I  Y+       A   ++QM  S V  +  T   +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC------------------- 160
            AC +L A+     V   + K      V   NAL+ ++A C                   
Sbjct: 96  RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155

Query: 161 ------------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                       GDV  A  +F  M  + +VSWTS+I+GL   G+ +EA++L  EM  AG
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG 215

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVK 266
              D VA   LL+AC++ G +D+GR  +F  + N   +   I   GC +V+M  + G ++
Sbjct: 216 FELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI---GCALVNMYVKCGDME 272

Query: 267 EAHEFIQKMPIEANPI-IWRTLISACCARG 295
           EA     K+      + IW  +I      G
Sbjct: 273 EALSVFGKLKGNQKDVYIWTAMIDGFAIHG 302


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/469 (43%), Positives = 297/469 (63%), Gaps = 1/469 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN FT+  VL+ACA +  LNLG  +H  VLK     ++ V N L+ +Y  C G IE  
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC-GEIENS 361

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+F   +E++ V+W+ +I GY +LG    A++LF  M    + P E+T  +VL A   L
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            ALE G+ + S   K M N+   + N+LIDM+AKCG +D A   F  M+ +  VSW ++I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G ++HG G+EA+ LF+ M ++   P+ + FVG+LSACS+ GL+DKGR +F SM  D+GI
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P IEHY CMV +L RSG+  EA + I ++P + + ++WR L+ AC     L L +   +
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  EP  ++ +VLLS++YA   RW+    +R+ M K+ +KK PG + +E    ++ F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD SH   K I+ ML+ + +K + AGYVP  S VLLD+ +++KE  L  HSE+LA+AF 
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFG 721

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           L++ P G  IRI+KNLR+C DCH+  K +SKI  REIV+RD +RFHHF+
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFR 770



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT    LK+C G+    +GKSVHG  LK  +  D++V   L+ +Y    G I  
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTK-SGEIAE 258

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVLSACT 123
            ++ F+EM + D + WS MI  YA+   S +A++LF R  Q S V P+  T  +VL AC 
Sbjct: 259 AQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACA 318

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  L +G  + S + K  ++ +V + NAL+D++AKCG+++ ++KLF     +  V+W +
Sbjct: 319 SLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNT 378

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----FDSM 239
           +I G    G G +A+ LF  ML   + P +V +  +L A +    ++ GR+       +M
Sbjct: 379 IIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTM 438

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            N   ++        ++DM  + GR+ +A     KM  + + + W  LI
Sbjct: 439 YNKDSVVAN-----SLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALI 481



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 7/357 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   N+F +  +LK    +   +   SVH  V K     D  V   L+  Y  C G ++ 
Sbjct: 99  GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVC-GNVDA 157

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD +  +D VSW+ M+  YA      D++ LF QM+I G  P+  T+   L +C  
Sbjct: 158 ARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNG 217

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A +VGK V     K   +R + +  AL++++ K G++ +A + F  M    ++ W+ +
Sbjct: 218 LEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLM 277

Query: 185 IAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I+  A   +  EA+ LF  M ++  V P++  F  +L AC+   L++ G +   S     
Sbjct: 278 ISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKV 336

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+   +     ++D+  + G ++ + +       E N + W T+I      G+ + A ++
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKLFTG-STEKNEVAWNTIIVGYVQLGDGEKALNL 395

Query: 304 TKRLIGNEPM-HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK--IPGSTLIEL 357
              ++G +    E  Y  +    A L+  E   +I  +  K    K  +  ++LI++
Sbjct: 396 FSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDM 452



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P + TY  VL+A A +  L  G+ +H   +K  +  D  V N+L+ MY  C G
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKC-G 457

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R  FD+M ++D VSW+A+I GY+  GL  +A++LF  MQ S   P+++T V VLS
Sbjct: 458 RIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLS 517

Query: 121 ACTDLGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC++ G L+ G+   +S ++   +   +     ++ +  + G  D+A+KL   +  + ++
Sbjct: 518 ACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSV 577

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           + W +++    +H + L+   +  + +    P DD   V L
Sbjct: 578 MVWRALLGACVIH-KNLDLGKVCAQRVLEMEPQDDATHVLL 617



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +Y  +L+      D N GKS+H  +LK     D+  QN L++ Y    G +E   K+FDE
Sbjct: 5   SYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHF-GFLEDASKLFDE 63

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M   ++VS+  +  G++R      A  L  ++   G   ++    T+L     +   +  
Sbjct: 64  MPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTC 123

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             V +++ K        +  ALID ++ CG+VD A ++F  +  + +VSWT ++A  A +
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-- 249
               +++ LF +M   G  P++      L +C+       G E F   K+  G   K+  
Sbjct: 184 YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKVCY 236

Query: 250 ---EHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
               + G  ++++  +SG + EA +F ++MP + + I W  +IS      + K A  +  
Sbjct: 237 DRDLYVGIALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMISRYAQSDKSKEALELFC 295

Query: 306 RLIGNEPMHESNYVLLSHIYA 326
           R+  +  +  +N+   S + A
Sbjct: 296 RMRQSSVVVPNNFTFASVLQA 316


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 298/478 (62%), Gaps = 11/478 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  N  T   +++ C   G+L LG  VHG  +KF    D  V N L+ MY    G
Sbjct: 104 MRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVK-SG 162

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+ GRK+FDEM  +  ++W+AMI GYA+ GL+ + ++L+++M+  G CPD +T+V VLS
Sbjct: 163 EIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLS 222

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGAL VGK VE  +E    + +  L NAL++M+A+CG++ KA  +F  M  +++VS
Sbjct: 223 SCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVS 282

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G  MHG+G  AV LF+EM+  G+ PD  AFV +LSACSH GL +KG +YF  M+
Sbjct: 283 WTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVME 342

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P  EHY CMVD+L R+GR+ EA E I+ M + A+  +W  L+ AC     ++LA
Sbjct: 343 RKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELA 402

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +++I  EP +   YVLLS++Y +    E   ++R +M KR +KK PG + +E    
Sbjct: 403 ELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGR 462

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK---HS 417
           ++ F  GD++H Q+ EIY+ L+E+   +K               + E +E+ LN    HS
Sbjct: 463 VHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKN-------DHERREEYLNSMGVHS 515

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLA+AFALL T   T I I+KNLR+C DCH   K +SKI +R+ VVRD  RFHHFK+
Sbjct: 516 EKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKN 573



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G SPN FT+PF +K+CA +     GK +H  V K     +  VQ +L+ MYG C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 61  GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            I+  RK+FDE   S + +V +++++ GYA      D + LF +M+  GV  + +TM+ +
Sbjct: 61  -IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  C   G L +G  V  F  K  ++    + N L+ M+ K G++D   KLF  M  + +
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           ++W ++I G A +G     + L++EM   G  PD +  VG+LS+C+H G +  G+E    
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK 239

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  FG          +V+M  R G +K+A +    MP+++  + W  +I      G+ +
Sbjct: 240 MEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKS-VVSWTAIIGGYGMHGQGE 297

Query: 299 LAESITKRLI 308
           +A  +   +I
Sbjct: 298 VAVGLFDEMI 307


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/472 (42%), Positives = 292/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            ++P+  T   V+ ACA + DL+ G  +HG ++K  F  D HV+N L+ MY  C G +  
Sbjct: 526 AINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKC-GSLPS 584

Query: 65  GRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              +F++    +D V+W+ +I  Y + G + +AI  F QM++    P+ +T V+VL A  
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L A   G    + I +     +  + N+LIDM+AKCG +  + KLF  M+ +  VSW +
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNA 704

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +++G A+HG G  A+ALF  M E+ V  D V+FV +LSAC H GLV++GR+ F SM + +
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKY 764

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            I P +EHY CMVD+L R+G   E   FI+ MP+E +  +W  L+ +C     +KL E  
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
              L+  EP + +++V+LS IYA+  RW    K R  M+  G+KK PG + +EL N+++ 
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 884

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GDKSH Q + ++ + + +  KM+K GYVP  S VL ++ EEDKE  L  HSE+LAI 
Sbjct: 885 FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 944

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           FALL TPPG+ I+IVKNLRVC DCH+ TKFISKI  R I+VRD  RFHHF+D
Sbjct: 945 FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFED 996



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    + PN+ T   +L ACA +  L LGKS+H   +K     D+     LV MY  C G
Sbjct: 421 MQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC-G 479

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                   F+ MS RD V+W+++I GYA++G   +AID+F ++++S + PD  TMV V+ 
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
           AC  L  L+ G  +   I K        + NALIDM+AKCG +  A  LF   +  +  V
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W  +IA    +G   EA++ F +M      P+ V FV +L A ++     +G   F + 
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHAC 658

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               G +        ++DM  + G++  + +   +M    + + W  ++S     G
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD-HKDTVSWNAMLSGYAVHG 713



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 2/298 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V  NK +      A A   DL  GK +HG  L+ +   DI V   L+ MY  C G  E 
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC-GETEK 382

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +++F  +  RD V+WSA+I    + G   +A+ LF++MQ   + P+ +T++++L AC D
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L++GK +  F  K  ++  +    AL+ M+AKCG    AL  F  M+ R IV+W S+
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G A  G    A+ +F ++  + + PD    VG++ AC+    +D+G      +    G
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLG 561

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
                     ++DM  + G +  A     K     + + W  +I+A    G  K A S
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAIS 619



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 170/341 (49%), Gaps = 46/341 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G+ P+K+T+ FVLKAC G  +L  G   HG + +     D+ +   LV MY S  G
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMY-SKMG 178

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+VFD+M +RD V+W+AMI G ++     +A+D FR MQ+ GV P  ++++ +  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               L  +E+ + +  ++ ++  + S  + N LID+++KCGDVD A ++F  M  +  VS
Sbjct: 239 GICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-----------------------------------L 205
           W +++AG A +G  +E + LF++M                                   L
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +  +  D +    L+   + CG  +K ++ F  ++        +  +  ++  L ++G  
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-----DLVAWSAIIAALVQTGYP 411

Query: 266 KEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI 303
           +EA    Q+M    ++ N +   +++ AC     LKL +SI
Sbjct: 412 EEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 43/296 (14%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L      N   YP +L +C     LN    +H  ++   F    H    L+++Y S    
Sbjct: 24  LSSSTYTNYLHYPRLLSSCK---HLNPLLQIHAQIIVSGFKHH-HSITHLINLY-SLFHK 78

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            +L R VFD       + W++MI  Y R     +A++++  M   G+ PD+ T   VL A
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT    L+ G W    I+++ + R V +   L+DM++K GD+ +A ++F  M  R +V+W
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV------------------------ 217
            ++IAGL+      EAV  F  M   GV P  V+ +                        
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 218 ---------GLLSACSHCGLVDKGREYFDSM--KNDFG---IIPKIEHYGCMVDML 259
                    GL+   S CG VD  R  FD M  ++D     ++    H GC V++L
Sbjct: 259 RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/501 (39%), Positives = 301/501 (60%), Gaps = 33/501 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--------- 58
           P++FT   VL ACA +  L +GK +H  +L+        + N L+  Y            
Sbjct: 294 PDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRI 353

Query: 59  ------------------EGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                             EG ++LG     R+VFD M+ RD ++W+AMI GY + G + +
Sbjct: 354 MDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDE 413

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A++LFR M  SG  P+  T+  VLSAC  L  L  GK +     + +  +SV + NA+I 
Sbjct: 414 AMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIIT 473

Query: 156 MFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           ++A+ G V  A ++F  +  R   V+WTS+I  LA HG G +A+ LFEEML  GV PD V
Sbjct: 474 VYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRV 533

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            ++G+ SAC+H G +DKG+ Y++ M N+ GI+P++ HY CMVD+L R+G + EAHEFIQ+
Sbjct: 534 TYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQR 593

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP+  + ++W +L++AC  R    LAE   ++L+  +P +   Y  L+++Y+   RW   
Sbjct: 594 MPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDA 653

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
            +I ++   + +KK  G +   + ++++ F   D  H Q   I +   EM  ++KKAG+V
Sbjct: 654 ARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFV 713

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P  + VL D+++E KE+ L++HSEKLAIAF L+ TP  T +RI+KNLRVCNDCH+A KFI
Sbjct: 714 PDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFI 773

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK+ +REI+VRD  RFHHF+D
Sbjct: 774 SKVVDREIIVRDATRFHHFRD 794



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 160/363 (44%), Gaps = 73/363 (20%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G++P++F    VL +CA      +G+ VH  V+K      + V N++++MYG C  
Sbjct: 154 MVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGD 213

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G ++L   +F+ M ER  VSW+A+I GY + 
Sbjct: 214 AETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQN 273

Query: 91  GLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           GL   A+  F R +  S + PDE T+ +VLSAC +L  L++GK + S+I +  +  S  +
Sbjct: 274 GLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQI 333

Query: 150 CNALIDMFAKCGDVDKALKL---------------------------------FRSMNGR 176
            NALI  +AK G V+ A ++                                 F  MN R
Sbjct: 334 MNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR 393

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY- 235
            +++WT++I G   +G+  EA+ LF  M+ +G  P+      +LSAC+    +  G++  
Sbjct: 394 DVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIH 453

Query: 236 ---FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
                S++        +     ++ +  RSG V  A     ++      + W ++I A  
Sbjct: 454 CRAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALA 508

Query: 293 ARG 295
             G
Sbjct: 509 QHG 511



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 27/353 (7%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N+L+ MY    G +   R VF +M ERD+VSW+ M+ G  R G   DA+  F  M   G+
Sbjct: 101 NSLLSMYAK-SGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGL 159

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P +  +  VLS+C    A  +G+ V SF+ K  ++  V + N+++ M+ KCGD + A  
Sbjct: 160 APSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARA 219

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  R+  SW ++++     GR   A+++FE M E  +    V++  +++  +  GL
Sbjct: 220 VFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYNQNGL 275

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV----KEAHEFIQKMPIEANPIIW 284
            D   ++F  M     + P  E     V   C + R+    K+ H +I +  +  +  I 
Sbjct: 276 DDMALKFFSRMLTASSMEPD-EFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIM 334

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             LIS     G ++ A    +R++    + + N +  + +    ++     + REV D  
Sbjct: 335 NALISTYAKSGSVETA----RRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVM 390

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTT 397
             + +   T +         + G + + Q+ E  E+     R M ++G  P +
Sbjct: 391 NNRDVIAWTAM---------IVGYEQNGQNDEAMELF----RSMIRSGPEPNS 430



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 5/230 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN  T   VL ACA +  L  GK +H   ++      + V N ++ +Y    G
Sbjct: 421 MIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR-SG 479

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            + L R+VFD++  R ++V+W++MI   A+ GL   AI LF +M   GV PD +T + V 
Sbjct: 480 SVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVF 539

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
           SACT  G ++ GK + E  + +  +   +     ++D+ A+ G + +A +  + M     
Sbjct: 540 SACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPD 599

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            V W S++A   +  +  +   L  E L +  P +  A+  L +  S CG
Sbjct: 600 TVVWGSLLAACRVR-KNADLAELAAEKLLSIDPDNSGAYSALANVYSACG 648


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 301/481 (62%), Gaps = 7/481 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           M   GV  ++FTY +VLKAC         L  GK +H  + +  +   +++  TLV MY 
Sbjct: 169 MNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYA 228

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEIT 114
              G ++    VF+ M  R+ VSWSAMI  YA+ G + +A+  FR+M  +     P+ +T
Sbjct: 229 RF-GCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVT 287

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           MV+VL AC  L ALE G+ +  +I ++ ++  + + +AL+ M+ +CG +D   ++F  M+
Sbjct: 288 MVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMH 347

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSW S+I+   +HG G +A+ +FEEML  G  P  V FV +L ACSH GLV++G+ 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F+SM  D GI P++EHY CMVD+L R+ R+ EA + +Q M  E  P +W +L+ +C   
Sbjct: 408 LFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G ++LAE  ++RL   EP +  NYVLL+ IYA+   W++  +++++++ RG++K+PG   
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +E+  ++Y FV  D+ +   ++I+  L ++   MK+ GY+P T  VL ++  E+KE  + 
Sbjct: 528 MEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVL 587

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLA+AF L+ T  G PIRI KNLR+C DCH  TKFISK   +EI+VRD +RFH FK
Sbjct: 588 GHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFK 647

Query: 475 D 475
           +
Sbjct: 648 N 648



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 13/312 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           SP++ TY  ++  C     L+ G  VH  +L      D  +   L+ MY    G ++  R
Sbjct: 74  SPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL-GSVDYAR 132

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--- 123
           KVFD+  +R    W+A+       G   + + L+ +M   GV  D  T   VL AC    
Sbjct: 133 KVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE 192

Query: 124 -DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
                L  GK + + + ++  N  V +   L+DM+A+ G VD A  +F  M  R +VSW+
Sbjct: 193 CTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWS 252

Query: 183 SVIAGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGR--EYFDS 238
           ++IA  A +G+  EA+  F EM+       P+ V  V +L AC+    +++GR    +  
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYIL 312

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            +    I+P I     +V M  R G++        +M  + + + W +LIS+    G  +
Sbjct: 313 RRGLDSILPVI---SALVTMYGRCGKLDVGQRVFDRMH-DRDVVSWNSLISSYGVHGYGR 368

Query: 299 LAESITKRLIGN 310
            A  I + ++ N
Sbjct: 369 KAIQIFEEMLAN 380


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 304/477 (63%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           ML  G+ P+  T   +      + D  +G++VHG V++ ++ + DI + N LV+MY    
Sbjct: 340 MLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKL- 398

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
           G I+  R VF+++  RD +SW+ +I GYA+ GL+++AID +  M+    + P++ T V++
Sbjct: 399 GSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSI 458

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L A + +GAL+ G  +   + K  +   V +   LIDM+ KCG ++ A+ LF  +   T 
Sbjct: 459 LPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETS 518

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W ++I+ L +HG G +A+ LF++M   GV  D + FV LLSACSH GLVD+ +  FD+
Sbjct: 519 VPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDT 578

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ ++ I P ++HYGCMVD+  R+G +++A+  +  MPI+A+  IW TL++AC   G  +
Sbjct: 579 MQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAE 638

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L    + RL+  +  +   YVLLS+IYA + +WE   K+R +   RG++K PG + + + 
Sbjct: 639 LGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVG 698

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           + +  F  G++SH Q  EIYE L  +  KMK  GYVP  S VL D+ E++KE+ L  HSE
Sbjct: 699 SVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSE 758

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAI F ++ TPP +PIRI KNLRVC DCH+ATK+ISKI  REI+VRD +RFHHFKD
Sbjct: 759 RLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKD 815



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 5/291 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ +T+P VLKAC  + D   G+ +H  VLK  F  D++V  +L+H+Y S  G +E+
Sbjct: 145 GVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLY-SRFGAVEV 200

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF +M  RD  SW+AMI G+ + G   +A+ +  +M+   V  D +T+ ++L  C  
Sbjct: 201 AHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQ 260

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              +  G  V  ++ K  +   V + NALI+M++K G +  A ++F  M  R +VSW S+
Sbjct: 261 SNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSI 320

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IA    +   + A+  F+EML  G+ PD +  V L S          GR     +     
Sbjct: 321 IAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW 380

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +   I     +V+M  + G +  A    +++P   + I W TLI+     G
Sbjct: 381 LEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SRDVISWNTLITGYAQNG 430



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 12/280 (4%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           +  V ++C  I   N+ K +H  +L      D+ +   LV +Y +  G + L    F  +
Sbjct: 54  FNLVFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATL-GDLSLSSTTFKHI 109

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQ-MQISGVCPDEITMVTVLSACTDLGALEVG 131
             ++  SW++M+  Y R G   D++D   + + +SGV PD  T   VL AC  L     G
Sbjct: 110 QRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---G 166

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + +  ++ K      V +  +LI ++++ G V+ A K+F  M  R + SW ++I+G   +
Sbjct: 167 EKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQN 226

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIE 250
           G   EA+ + + M    V  D V    +L  C+    V  G   +   +K+  G+   + 
Sbjct: 227 GNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKH--GLESDVF 284

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
               +++M  + GR+++A      M +  + + W ++I+A
Sbjct: 285 VSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA 323



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%)

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           V  +CT++    V K + + +      + V L   L+ ++A  GD+  +   F+ +  + 
Sbjct: 57  VFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSAC--------SHCGL 228
           I SW S+++     GR  +++    E+L  +GV PD   F  +L AC         HC +
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWV 173

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  G E+      D  +   + H      +  R G V+ AH+    MP+  +   W  +I
Sbjct: 174 LKMGFEH------DVYVAASLIH------LYSRFGAVEVAHKVFVDMPVR-DVGSWNAMI 220

Query: 289 SACCARGELKLAESITKRLIGNE 311
           S  C  G +  A  +  R+   E
Sbjct: 221 SGFCQNGNVAEALRVLDRMKTEE 243


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 299/510 (58%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYG 56
           M+   V  ++FT+  VL ACA  G    GKSVHG +++ Q        + V N LV +Y 
Sbjct: 289 MVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLY- 347

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSA-------------------------------MIG 85
           S  G I + +++FD M+ +D VSW+                                M+ 
Sbjct: 348 SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVS 407

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GY   GLS DA+ LF QM+   V P + T    ++AC +LGAL+ G+ + + + +     
Sbjct: 408 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 467

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S    NAL+ M+AKCG V+ A  +F  M     VSW ++I+ L  HG G EA+ LF++M+
Sbjct: 468 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 527

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ PD ++F+ +L+AC+H GLVD+G  YF+SMK DFGI P  +HY  ++D+L RSGR+
Sbjct: 528 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 587

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
            EA + I+ MP E  P IW  ++S C   G+++       +L    P H+  Y+LLS+ Y
Sbjct: 588 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTY 647

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           +   RW    ++R++M  RG+KK PG + IE+ ++I+ F+ GD  H +++E+Y+ L+ +G
Sbjct: 648 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIG 707

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +M+K GYVP T  VL D+   +KE  L  HSEKLA+ F LLK PPG  + ++KNLR+C 
Sbjct: 708 ARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICG 767

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+A  F+SK   REIVVRD  RFHHFKD
Sbjct: 768 DCHTAMMFMSKAVGREIVVRDVRRFHHFKD 797



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 74/373 (19%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------ 59
           P+ +++  ++ A   + +L       +H +VLK      + V N L+ +Y  C+      
Sbjct: 159 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 218

Query: 60  ---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                      G +   R VF+E+  +  V W+AMI GY + G+
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVG 148
             DA +LFR+M    V  DE T  +VLSAC + G    GK V   I +   N     ++ 
Sbjct: 279 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 338

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA------------------- 189
           + NAL+ +++K G +  A ++F +MN + +VSW ++++G                     
Sbjct: 339 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 398

Query: 190 -----------MHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
                      +HG GL  +A+ LF +M    V P D  + G ++AC   G +  GR+  
Sbjct: 399 DLSWMVMVSGYVHG-GLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 457

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +    G          ++ M  + G V +A      MP   + + W  +ISA    G 
Sbjct: 458 AHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHGH 515

Query: 297 LKLAESITKRLIG 309
            + A  +  +++ 
Sbjct: 516 GREALELFDQMVA 528



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVG 131
           + RD+V  +AM+  +AR  L+  A+ +F  +  SG + PD+ +   ++SA   +  L   
Sbjct: 121 ARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAP 180

Query: 132 KWVE--SFIEKQMVNRSVGLCNALIDMFAKC----------------------------- 160
              +    + K      + + NALI ++ KC                             
Sbjct: 181 HCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVV 240

Query: 161 -----GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                GDV+ A  +F  ++G+  V W ++I+G    G   +A  LF  M+   VP D+  
Sbjct: 241 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 300

Query: 216 FVGLLSACSHCGLVDKGREYFDS---MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           F  +LSAC++ G    G+        ++ +F     +     +V +  + G++  A    
Sbjct: 301 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 360

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITK 305
             M ++ + + W T++S     G L  A  + K
Sbjct: 361 DTMNLK-DVVSWNTILSGYIDSGCLDKAVEVFK 392


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/490 (42%), Positives = 309/490 (63%), Gaps = 27/490 (5%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +F+ P VLKAC  +   + G+ VHG VLK     D  V N++V MY    G IEL R+VF
Sbjct: 109 EFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDF-GEIELARRVF 167

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLF-------------------RQMQISGVCP 110
           D M  RD VSW++MI GY + G    A +LF                   ++M   G+ P
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRP 227

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC-NALIDMFAKCGDVDKALKL 169
           D   +V+VLSA  DLG +E GKW+ +++    +  S G   +ALIDM++KCG ++ A  +
Sbjct: 228 DGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHV 287

Query: 170 FRSMNGR-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           FRS++ R  I  W S+I+GLA+HG   EA+ +F EM    + P+++ F+GLLS CSH GL
Sbjct: 288 FRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGL 347

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V++G+ YF+SM   + I+P+I+HYGCM+D+  R+GR+++A   IQ MP EA+ + W+ ++
Sbjct: 348 VEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 407

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           SA    G +++ +S   R I   P   S+YVLLS+IYAK  RW+   KIR +M +RG+KK
Sbjct: 408 SASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKK 467

Query: 349 IPGSTLIELDNEIYEFVCG---DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
           I G + + ++ +++EF+ G   D S+  S ++   + E+  ++K  GY P  ++VLLDI 
Sbjct: 468 IAGCSSMLVNGKVHEFLLGKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIE 525

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           +E KE  LN HSEK+AIAF L+      PI IVKNLRVC DCH   K +SK+YNR+I++R
Sbjct: 526 DEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMR 585

Query: 466 DRHRFHHFKD 475
           D++RFHHF++
Sbjct: 586 DQNRFHHFEN 595


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 305/475 (64%), Gaps = 22/475 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P++ T PFVLK+ A + D+ LG+ +HG V+K     D  V+ +LV MY    G
Sbjct: 129 MLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKI-G 187

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G ++FDE  +R+                  ++I L+     +GV P+++T+V+ L 
Sbjct: 188 ELGFGLQLFDESPQRNK----------------AESILLW-----NGVRPNDLTVVSALL 226

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT +GAL+VG+ + +++       + G+  AL+DM+AKCG++  A ++F    G+ +++
Sbjct: 227 ACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLT 286

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +I G A+HG   +A+  F +M  AG+ PD+V F+ +L+ACSH G VD+G  +F+SM+
Sbjct: 287 WSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMR 346

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P ++HY  +VD+L R+GR+ EA  FIQ MPI  + +IW  L  AC A   +++A
Sbjct: 347 LDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMA 406

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++L+  EP H  +YV LS++YA + RWE   ++R +M  RG++K PG + IE++ +
Sbjct: 407 ELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQ 466

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD +H +++EI   L+E+    K+ GY+P T+ VL +I EE+KEDAL  HSEKL
Sbjct: 467 VHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKL 526

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T PG+ IRIVKNLRVC DCHS  K+ SK+  REI++RD  RFHHFKD
Sbjct: 527 ALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKD 581



 Score = 38.9 bits (89), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI        +D AL +FR  +   +  + ++I GLA + R   +V+ F  ML   + PD
Sbjct: 78  LISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPD 137

Query: 213 DVAFVGLLSA-----------CSHCGLVDKGREYFDSM--KNDFGIIPKIEHYGCMVDML 259
            +    +L +           C H G++  G E FDS    +   +  KI   G  + + 
Sbjct: 138 RLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVRVSLVDMYVKIGELGFGLQLF 196

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
             S +  +A   +    +  N +   + + AC   G L++ E I   L  N
Sbjct: 197 DESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSN 247


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 304/475 (64%), Gaps = 5/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E+GVS ++     V++AC   G+  +G SVHG +L+     D+    +LV MY    G
Sbjct: 199 MREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAK-NG 257

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  +VF  M  R+ V+WSA+I G+A+ G + +A+DLFR++Q  G+ P    +V+ L 
Sbjct: 258 HLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALL 317

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G L++GK +  FI +++  + + L  A++DM++KCG ++ A KLF  ++ R +V 
Sbjct: 318 ACASVGFLKLGKSIHGFILRRLEWQCI-LGTAVLDMYSKCGSLESARKLFNKLSSRDLVL 376

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA    HG G +A+ALF+E+ E G+ PD   F  LLSA SH GLV++G+ +FD M 
Sbjct: 377 WNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMI 436

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +FGI P  +HY C+VD+L RSG V+EA++ +  M  E    IW  L+S C    +L+L 
Sbjct: 437 KEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELG 496

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E+I K+++   P       L+S++YA   +W+K  +IR++M   G KK+PG +LIE+   
Sbjct: 497 ETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGT 556

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + FV  D+SH Q +EI +M+ ++  +M+K GYVP T  V  D+   D++  L+ HSE+L
Sbjct: 557 RHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDL---DEDQLLSYHSERL 613

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I+KNLRVC DCH A K+ISKI +REIVVRD  RFHHFKD
Sbjct: 614 AIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKD 668



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 20/332 (6%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     PN  T+   L ACA +GDL+  +SV        +G D+ V + L+H+Y  C G 
Sbjct: 99  LPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRC-GA 157

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E   +VFD M  +D V+WS M+ G+   G   +A+ ++ +M+  GV  DE+ MV V+ A
Sbjct: 158 MEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQA 217

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C   G   +G  V   + +  +   V    +L+ M+AK G +D A ++FR M  R  V+W
Sbjct: 218 CMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTW 277

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I+G A +GR +EA+ LF E+   G+ P   A V  L AC+  G +  G       K+
Sbjct: 278 SALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLG-------KS 330

Query: 242 DFGIIPKIEHYGCM-----VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC----C 292
             G I +   + C+     +DM  + G ++ A +   K+    + ++W  +I+ C    C
Sbjct: 331 IHGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFNKLS-SRDLVLWNAIIACCGTHGC 389

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
               L L + + +   G +P H +   LLS +
Sbjct: 390 GHDALALFQELNE--TGIKPDHATFASLLSAL 419



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ ++  ++R G    A+ +FR +  S   P+  T    L+AC  LG L+  + V     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALP-SSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
                  V +C+AL+ ++++CG +++A+++F  M  +  V+W++++AG    GR +EA+A
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 200 LFEEMLEAGVPPDDVAFVGLLSAC-----SHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
           ++  M E GV  D+V  VG++ AC     +  G    GR     M+ D      +     
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMD------VVTTTS 248

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +V M  ++G +  A +  + MP   N + W  LIS     G    A  + + L   + + 
Sbjct: 249 LVSMYAKNGHLDVACQVFRMMPYR-NDVTWSALISGFAQNGRAVEALDLFRELQA-DGLQ 306

Query: 315 ESNYVLLSHIYA 326
             ++ L+S + A
Sbjct: 307 PCSWALVSALLA 318


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 315/518 (60%), Gaps = 46/518 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M   GV P++ T   +   CA +GD+ +G   HG ++K   G      N ++ MY     
Sbjct: 109 MRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGL 168

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                         G+  GR VFDEM ER+ V+W+ MI GY   
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228

Query: 91  GLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESF---IEKQMVNRS 146
           GL+ ++  L R+M     +  + +T+ ++L+AC+  G L +G+WV ++    +++ +N  
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIM 288

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           VG   A++DM+AKCG +  A K F+ M  R +VSW ++++GLAMHG G  A+ +F +M +
Sbjct: 289 VG--TAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFK 346

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
               PDDV F  +LSACSH GLVD+G  YF ++++ +GI PK+EHY CMVD+L R+GR++
Sbjct: 347 EA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLE 405

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA   +++MPI  N ++  +L+ +C   G+L+L E + + L+  +P +   ++LLS++YA
Sbjct: 406 EAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYA 465

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +  +   +R+V+ KRG+KK+PG + I +  ++++F  GDKSH +++E+Y MLDEM  
Sbjct: 466 LAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIP 525

Query: 387 KMKKAGYVPTTS-------EVLLD--INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRI 437
           +++ AGY P T+       + L D  + +E+KE AL  HSEKLAI F L+ T PG P+ I
Sbjct: 526 RLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHI 585

Query: 438 VKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            KNLR+C DCHSA K +SKIYNREIV+RDR+RFH FK+
Sbjct: 586 FKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKE 623



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 46/323 (14%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGD--DIHVQNTLVHMYGSCEGGIELGRKVFD 70
           Y F+L++CA    L++G+ +H  ++        +  + N L+  Y SC G     RKVFD
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASC-GCAWQARKVFD 74

Query: 71  EM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           E+  S +D+V W+ ++G + R  +S +A+ +F +M+  GV PDE+T+V +   C  LG +
Sbjct: 75  EIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDV 134

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            VG      + K  +      CNA++DM+AK G + +A ++F  M G+++VSWT ++ G+
Sbjct: 135 VVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGV 194

Query: 189 AMHGRGLEAVALFEEM---------------LEAGVPPDDVAFV---------------- 217
                      +F+EM               L++G+  +  A V                
Sbjct: 195 IRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTL 254

Query: 218 -GLLSACSHCGLVDKGR----EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
             +L+ACS  G +  GR        + + +  I+        MVDM  + GR+  A +F 
Sbjct: 255 CSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTA----MVDMYAKCGRIHIAFKFF 310

Query: 273 QKMPIEANPIIWRTLISACCARG 295
           +KMP + N + W  ++S     G
Sbjct: 311 KKMP-QRNVVSWNAMLSGLAMHG 332


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/465 (43%), Positives = 302/465 (64%), Gaps = 8/465 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEM 72
              A A I D  +  S+H  V+K     D  V NT++  Y   +GG   +   RKVFD M
Sbjct: 199 AFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYA--KGGRRDLGAARKVFDTM 256

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISG-VCPDEITMVTVLSACTDLGALEV 130
            E+D VSW++MI  YA+ G+S DA+ L+R+M  +SG +  + +T+  +L AC   G ++ 
Sbjct: 257 -EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQT 315

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK + + + +  +  +V +  +++DM++KCG V+ A K F+ +  + I+SW+++I G  M
Sbjct: 316 GKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGM 375

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           HG G EA+ +F EM  +G  P+ + F+ +L+ACSH GL+DKGR ++++MK  FGI P +E
Sbjct: 376 HGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVE 435

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           HYGCMVD+L R+G + EA+  I++M ++ +  IW  L+SAC     ++LAE   KRL   
Sbjct: 436 HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFEL 495

Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
           +  +   YVLLS+IYA+   W+   ++R ++  RG++K PG + +EL    + F  GDKS
Sbjct: 496 DATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKS 555

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
           H Q KEIY  L ++  KM++AGYVP T  VL D++EE+K  AL+ HSEKLAIAFAL+ + 
Sbjct: 556 HPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSV 615

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           PG+ I ++KNLRVC DCH+A K I+KI  REI+VRD  RFHHFKD
Sbjct: 616 PGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKD 660



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N  T   +L ACA  G +  GK +H  V++    ++++V  ++V MY  C G +E+ RK 
Sbjct: 296 NAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKC-GRVEMARKA 354

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F ++ E++ +SWSAMI GY   G   +A+D+F +M  SG  P+ IT ++VL+AC+  G L
Sbjct: 355 FQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLL 414

Query: 129 EVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIA 186
           + G+ W  +  ++  +   V     ++D+  + G +D+A  L + M  +   + W ++++
Sbjct: 415 DKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLS 474

Query: 187 GLAMH 191
              +H
Sbjct: 475 ACRIH 479



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 29  GKSVHG-AVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           G+ +H  A+    F  D    + L+HMY  C   I+  RK FDE+   + V  +AM  GY
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPID-ARKAFDEIPSPNPVIITAMASGY 166

Query: 88  ARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
            R  L   ++ LFR++  SG     DE   +   SA   +    +   + + + K  ++ 
Sbjct: 167 VRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDG 226

Query: 146 SVGLCNALIDMFAKCG--DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             G+ N ++D +AK G  D+  A K+F +M  + +VSW S+IA  A +G   +A+ L+ +
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 204 ML--EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
           ML     +  + V    +L AC+H G +  G+   + +    G+   +     +VDM  +
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVR-MGLEENVYVGTSVVDMYSK 344

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYV 319
            GRV+ A +  QK+  E N + W  +I+     G  + A  I   +   G  P    NY+
Sbjct: 345 CGRVEMARKAFQKIK-EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNP----NYI 399

Query: 320 LLSHIYA 326
               + A
Sbjct: 400 TFISVLA 406


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 302/519 (58%), Gaps = 45/519 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCE 59
           M+  GV PN  T    + AC  +  L  G+ +HG  +K +    D+ V N+LV  Y  C 
Sbjct: 203 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 262

Query: 60  GGIELGRK-------------------------------------------VFDEMSERD 76
             +E+ R+                                           VF E+S RD
Sbjct: 263 S-VEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRD 321

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
            V W+++I   A+ G S +A+DL R+M +S V  + +TMV+ L AC+ L AL  GK +  
Sbjct: 322 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 381

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           FI +  ++    + N+LIDM+ +CG + K+ ++F  M  R +VSW  +I+   MHG G++
Sbjct: 382 FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMD 441

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           AV LF++    G+ P+ + F  LLSACSH GL+++G +YF  MK ++ + P +E Y CMV
Sbjct: 442 AVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMV 501

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R+G+  E  EFI+KMP E N  +W +L+ AC       LAE   + L   EP    
Sbjct: 502 DLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSG 561

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           NYVL+++IY+   RWE   KIR +M +RG+ K PG + IE+  +++ FV GD SH   ++
Sbjct: 562 NYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQ 621

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIR 436
           I   ++ +   +K+ GYVP T+ VL D++E++KE +L  HSEK+A+AF L+ T  GTP+R
Sbjct: 622 ISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLR 681

Query: 437 IVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           I+KNLRVC DCHSATKFISK+  R+I++RD +RFHHF D
Sbjct: 682 IIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVD 720



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 57/372 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV P+ F +P V KAC+ + +  +GK V+  +L   F  +  V+ +++ M+  C G
Sbjct: 102 MVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKC-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++ R+ F+E+  +D   W+ M+ GY   G    A+++FR+M + GV P+ IT+ + +S
Sbjct: 161 RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVS 220

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKC------------------- 160
           ACT+L  L  G+ +  + I+ + ++  + + N+L+D +AKC                   
Sbjct: 221 ACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLV 280

Query: 161 --------------GDVDKALKLFRSM----------NGRTIVSWTSVIAGLAMHGRGLE 196
                         GD   AL+ F+ M          + R +V W S+I+  A  GR + 
Sbjct: 281 SWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVN 340

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH----Y 252
           A+ L  EM  + V  + V  V  L ACS    + +G+E      + F I   ++      
Sbjct: 341 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI-----HQFIIRCGLDTCNFIL 395

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK--RLIGN 310
             ++DM  R G ++++      MP + + + W  +IS     G    A ++ +  R +G 
Sbjct: 396 NSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 311 EPMHESNYVLLS 322
           +P H +   LLS
Sbjct: 455 KPNHITFTNLLS 466



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 152/328 (46%), Gaps = 49/328 (14%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI--HVQNTLVHMYGSCEGG-IELGRKVF 69
           Y  +L+ C  + +L LG  VH  ++    G D+   + + L+ +Y  C+ G +E  R++F
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLV--VNGVDVCEFLGSRLLEVY--CQTGCVEDARRMF 68

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D+MSER+  SW+A++  Y  LG   + I LF  M   GV PD      V  AC++L    
Sbjct: 69  DKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 128

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           VGK V  ++       +  +  +++DMF KCG +D A + F  +  + +  W  +++G  
Sbjct: 129 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE--------------- 234
             G   +A+ +F +M+  GV P+ +     +SAC++  L+  GRE               
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248

Query: 235 --------YF------DSMKNDFGIIPKIE--HYGCM--VDMLCRSGRVKEAHEFIQKMP 276
                   Y+      +  +  FG+I + +   +  M  V    + G  K A EF Q+M 
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMH 308

Query: 277 IEA---------NPIIWRTLISACCARG 295
           I           + ++W ++ISAC   G
Sbjct: 309 IACSVFSELSTRDVVVWNSIISACAQSG 336



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 110 PDEITMV--TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC----NALIDMFAKCGDV 163
           PDE   +  ++L  C  L  L +G  V +    Q+V   V +C    + L++++ + G V
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHA----QLVVNGVDVCEFLGSRLLEVYCQTGCV 61

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A ++F  M+ R + SWT+++      G   E + LF  M+  GV PD   F  +  AC
Sbjct: 62  EDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 121

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           S       G++ +D M +  G        G ++DM  + GR+  A  F +++  + +  +
Sbjct: 122 SELKNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFM 179

Query: 284 WRTLISACCARGELKLAESITKRLI 308
           W  ++S   ++GE K A ++ ++++
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMV 204


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ FT   VL   A   D+  G  +HG   +  F DD+ V ++L+ MY +C  
Sbjct: 164 MWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTR 223

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   KVFD +  RD++ W++M+ G A+ G   +A+ LFR+M  SG+ P  +T  +++ 
Sbjct: 224 -TDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIP 282

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L +L +GK + +++ +   + +V + ++LIDM+ KCG+V  A ++F  +    IVS
Sbjct: 283 ACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVS 342

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A+HG   EA+ LF+ M    + P+ + F+ +L+ACSH GLVDKG +YF+SM 
Sbjct: 343 WTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMS 402

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +GI+P +EH+  + D L R G+++EA+ FI  M I+    +W TL+ AC       LA
Sbjct: 403 DHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLA 462

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K++   EP    ++++LS+ Y+   RW +   +R+ M K+GM+K P  + IE+ N+
Sbjct: 463 EEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNK 522

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + FV  DKSH   + I + L+    +M + GYVP T +V  DI EE K   L  HSEKL
Sbjct: 523 QHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKL 582

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F ++ TPPGT IR++KNLRVC DCH+ TKFISKI  REIV+RD +RFHHFKD
Sbjct: 583 AIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKD 637



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 19/327 (5%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---------- 61
           + P  LK+CA +G   LG S+H   L+     D    N L+++Y                
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 62  ---IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
              +E  RKVFDEM E+D VSW+ ++ G A  G   +A+ L R+M   G  PD  T+ +V
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L    +   +  G  +  F  +   +  V + ++LIDM+A C   D ++K+F ++  R  
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           + W S++AG A +G   EA+ LF  ML +G+ P  V F  L+ AC +   +  G++    
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGEL 297
           +    G    +     ++DM C+ G V  A     +  I++  I+ W  +I      G  
Sbjct: 300 VIRG-GFDGNVFISSSLIDMYCKCGNVSIARRIFDR--IQSPDIVSWTAMIMGHALHGPA 356

Query: 298 KLAESITKRL-IGN-EPMHESNYVLLS 322
           + A  +  R+ +GN +P H +   +L+
Sbjct: 357 REALVLFDRMELGNLKPNHITFLAVLT 383


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/493 (40%), Positives = 308/493 (62%), Gaps = 34/493 (6%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL ACA I DL  G+ V   + + +   ++ + N ++ MY  C G IE  +++FD M E+
Sbjct: 240 VLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKC-GSIEDAKRLFDAMEEK 298

Query: 76  DSVSWSAMIGGYA-------------------------------RLGLSTDAIDLFRQMQ 104
           D+V+W+ M+ GYA                               + G   +A+ +F ++Q
Sbjct: 299 DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQ 358

Query: 105 IS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +   +  ++IT+V+ LSAC  +GALE+G+W+ S+I+K  +  +  + +ALI M++KCGD+
Sbjct: 359 LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDL 418

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           +KA ++F S+  R +  W+++I GLAMHG G EAV +F +M EA V P+ V F  +  AC
Sbjct: 419 EKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCAC 478

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVD+    F  M++ +GI+P+ +HY C+VD+L RSG +++A +FI+ MPI  +  +
Sbjct: 479 SHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 538

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ AC     L LAE    RL+  EP ++  +VLLS+IYAK  +W+  +++R+ M  
Sbjct: 539 WGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRV 598

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G+KK PG + IE+D  I+EF+ GD +H  S+++Y  L E+  K+K  GY P  S VL  
Sbjct: 599 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQI 658

Query: 404 INEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           I EE+ KE +LN HSEKLAI + L+ T     IR++KNLR+C DCH+  K IS++YNREI
Sbjct: 659 IEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREI 718

Query: 463 VVRDRHRFHHFKD 475
           +VRDR+RFHHF++
Sbjct: 719 IVRDRYRFHHFRN 731



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 35/320 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNK+T+PF++KA A +  L+LG+S+HG  +K   G D+ V N+L+H Y SC G ++   K
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSC-GDLDSACK 189

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  + E+D VSW++MI G+ + G    A++LF++M+   V    +TMV VLSAC  +  
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE G+ V S+IE+  VN ++ L NA++DM+ KCG ++ A +LF +M  +  V+WT+++ G
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDG 309

Query: 188 LAM-------------------------------HGRGLEAVALFEEM-LEAGVPPDDVA 215
            A+                               +G+  EA+ +F E+ L+  +  + + 
Sbjct: 310 YAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQIT 369

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            V  LSAC+  G ++ GR     +K + GI         ++ M  + G +++A E    +
Sbjct: 370 LVSTLSACAQVGALELGRWIHSYIKKN-GIKMNFYVTSALIHMYSKCGDLEKAREVFNSV 428

Query: 276 PIEANPIIWRTLISACCARG 295
             + +  +W  +I      G
Sbjct: 429 E-KRDVFVWSAMIGGLAMHG 447



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 129/272 (47%), Gaps = 8/272 (2%)

Query: 20  CAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSV 78
           C+ +  L   K  H  +++     D +  + L  +   S    +E  RKVFDE+ + +S 
Sbjct: 41  CSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSF 97

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           +W+ +I  YA       +I  F  M    S   P++ T   ++ A  ++ +L +G+ +  
Sbjct: 98  TWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 157

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
              K  V   V + N+LI  +  CGD+D A K+F ++  + +VSW S+I G    G   +
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 217

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+ LF++M    V    V  VG+LSAC+    ++ GR     ++ +  +   +     M+
Sbjct: 218 ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEEN-RVNVNLTLANAML 276

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           DM  + G +++A      M  E + + W T++
Sbjct: 277 DMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 307



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 14/246 (5%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L+  +  N+ T    L ACA +G L LG+ +H  + K     + +V + L+HMY  C G 
Sbjct: 359 LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKC-GD 417

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E  R+VF+ + +RD   WSAMIGG A  G  ++A+D+F +MQ + V P+ +T   V  A
Sbjct: 418 LEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCA 477

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLC------NALIDMFAKCGDVDKALKLFRSMNG 175
           C+  G ++     ES   K  +  S G+         ++D+  + G ++KA+K   +M  
Sbjct: 478 CSHTGLVDEA---ESLFYK--MESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPI 532

Query: 176 RTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
               S W +++    +H     A      +LE   P +D A V L +  +  G  D   E
Sbjct: 533 PPSTSVWGALLGACKIHANLSLAEMACTRLLELE-PRNDGAHVLLSNIYAKSGKWDNVSE 591

Query: 235 YFDSMK 240
               M+
Sbjct: 592 LRKHMR 597


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/469 (41%), Positives = 290/469 (61%), Gaps = 4/469 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T+  +L AC  + DL  G+++H  V +  +  D+ + N L++MY  C   +E  R+
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ M  RD ++W+ +I  Y + G + DA+D+F+QMQ+  V P+EIT+  VLSAC  LGA
Sbjct: 322 VFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
              GK V + I        V L N+L++M+ +CG +D  + +F ++  +++VSW+++IA 
Sbjct: 382 KRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAA 441

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A HG     +  F E+L+ G+  DDV  V  LSACSH G++ +G + F SM  D G+ P
Sbjct: 442 YAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAP 501

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
              H+ CMVD+L R+GR++ A   I  MP   + + W +L+S C    + K A  +  +L
Sbjct: 502 DYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561

Query: 308 IGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
              E   E S   LLS++YA+  RW+    +R+  ++R  +K PG + IE+++ ++EFV 
Sbjct: 562 FELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIEINDTVHEFVA 618

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GDKSH + + I   +  + ++MK AGYVP    VL ++ EE+KE  L  HSEKLAIA+ L
Sbjct: 619 GDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGL 678

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + TPPGTP+ IVKNLR C DCH+A KFIS+I  R+IVVRD  RFHHF++
Sbjct: 679 ISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 133/230 (57%), Gaps = 2/230 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T+   L AC  +GD++ G+ +    +   +  D  VQN L++MY  C G +E 
Sbjct: 158 GMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC-GSLES 216

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVFD +  RD ++W+ MI GYA+ G +T A++LF++M  +   P+ +T + +L+ACT+
Sbjct: 217 ARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTS 183
           L  LE G+ +   + +      + + N L++M+ KC   +++A ++F  M  R +++W  
Sbjct: 277 LEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNI 336

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           +I     +G+  +A+ +F++M    V P+++    +LSAC+  G   +G+
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 166/312 (53%), Gaps = 8/312 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           M+  G+ P+   +   +  C+   DL  G+ +H  +L+ +  + DI +   L+ MY  C 
Sbjct: 49  MVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCR 108

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM---QISGVCPDEITMV 116
             +EL RK FDEM ++  V+W+A+I GY+R G    A+ +++ M      G+ PD IT  
Sbjct: 109 D-LELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           + L ACT +G +  G+ +E+            + NALI+M++KCG ++ A K+F  +  R
Sbjct: 168 SALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +++W ++I+G A  G   +A+ LF+ M      P+ V F+GLL+AC++   +++GR   
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH 287

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCR-SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++ D G    +     +++M  + S  ++EA +  ++M    + I W  LI A    G
Sbjct: 288 RKVRED-GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYG 345

Query: 296 ELKLAESITKRL 307
           + K A  I K++
Sbjct: 346 QAKDALDIFKQM 357



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
           MYG C G +     VF  +   +SVSW+ ++  +AR G   +A+  +R+M + G+ PD  
Sbjct: 1   MYGKC-GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGA 59

Query: 114 TMVTVLSACTDLGALEVGKWVESFI-EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
             V  +  C+    L+ G+ + + I E +++   + L  ALI M+A+C D++ A K F  
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLV 229
           M  +T+V+W ++IAG + +G    A+ ++++M+     G+ PD + F   L AC+  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            +GRE  ++     G          +++M  + G ++ A +   ++    + I W T+IS
Sbjct: 180 SQGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 290 ACCARGELKLAESITKRLIGNEP 312
               +G    A  + +R+  N+P
Sbjct: 238 GYAKQGAATQALELFQRMGPNDP 260



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+PN+ T   VL ACA +G    GK+VH  +   +   D+ ++N+L++MY  C G ++  
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRC-GSLDDT 420

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF  + ++  VSWS +I  YA+ G S   ++ F ++   G+  D++TMV+ LSAC+  
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCN------ALIDMFAKCGDVDKALKLFRSMNG-RTI 178
           G L+ G  V++F+   MV    GL         ++D+ ++ G ++ A  L   M      
Sbjct: 481 GMLKEG--VQTFL--SMVGDH-GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDA 535

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           V+WTS+++G  +H     A  + +++ E     D+ + V LLS
Sbjct: 536 VAWTSLLSGCKLHNDTKRAARVADKLFELE-SEDEHSTVTLLS 577


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/461 (41%), Positives = 302/461 (65%), Gaps = 2/461 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL AC+ + + ++ + VHG ++K  F  D+ V+NTL+  Y  C G + + R+VFD M+ER
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKC-GELGVSRRVFDGMAER 325

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWV 134
           D +SW+++I  YA+ G+ST+++++F +M   G +  + +T+  VL AC   G+  +GK +
Sbjct: 326 DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCI 385

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
              + K  +  +V +  ++IDM+ KCG V+ A K F  M  + + SW++++AG  MHG  
Sbjct: 386 HDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA 445

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA+ +F EM  AGV P+ + FV +L+ACSH GL+++G  +F +M ++F + P +EHYGC
Sbjct: 446 KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGC 505

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           MVD+L R+G +KEA + I+ M +  + ++W  L+ AC     + L E   ++L   +P +
Sbjct: 506 MVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKN 565

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
              YVLLS+IYA   RWE   ++R +M   G+ K PG +L+++   ++ F+ GD+ H Q 
Sbjct: 566 CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQH 625

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           ++IYE L+++  K+++ GYVP  + VL D+  E+KE  L  HSEKLA+AF ++ T PGT 
Sbjct: 626 EKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTT 685

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           I I+KNLRVC DCH+A KFISKI +REIVVRD  RFHHF+D
Sbjct: 686 IHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRD 726



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 174/335 (51%), Gaps = 14/335 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+P  +K+C+ + DL+ G+  H   L F F  D+ V + LV MY  C G
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKC-G 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SG------VCPDE 112
            +   R +FDE+S R+ VSW++MI GY +   +  A+ LF++  +  SG      VC D 
Sbjct: 202 ELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDP 261

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           I MV+VLSAC+ +    + + V  F+ K+     +G+ N L+D +AKCG++  + ++F  
Sbjct: 262 IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDG 321

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDK 231
           M  R ++SW S+IA  A +G   E++ +F  M++ G +  + V    +L AC+H G    
Sbjct: 322 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 381

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+   D +    G+   +     ++DM C+ G+V+ A +   +M  E N   W  +++  
Sbjct: 382 GKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGY 439

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
              G  K A  +   +  N    + NY+    + A
Sbjct: 440 GMHGHAKEALEVFYEM--NMAGVKPNYITFVSVLA 472



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + SW SVIA LA  G  +EA+  F  M +  + P+   F   + +CS    +  GR+  
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                 FG  P +     +VDM  + G +++A     ++    N + W ++I+ 
Sbjct: 176 QQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS-HRNIVSWTSMITG 227


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 292/469 (62%), Gaps = 1/469 (0%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           S NKFT    L A A I  L LGK +HG +++ +   D  V + L+ +YG C G ++  R
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKC-GSLDEAR 275

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            +FD+M +RD VSW+ MI      G   +   LFR +  SGV P+E T   VL+AC D  
Sbjct: 276 GIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHA 335

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           A  +GK V  ++     +      +AL+ M++KCG+   A ++F  M+   +VSWTS+I 
Sbjct: 336 AEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIV 395

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G A +G+  EA+  FE +L++G  PD V +VG+LSAC+H GLVDKG EYF S+K   G++
Sbjct: 396 GYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLM 455

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
              +HY C++D+L RSGR KEA   I  MP++ +  +W +L+  C   G L+LA+   K 
Sbjct: 456 HTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKA 515

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L   EP + + Y+ L++IYA    W +   +R+ MD  G+ K PG + IE+  +++ F+ 
Sbjct: 516 LYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLV 575

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD SH ++ +I+E L E+ +K+K+ GYVP T+ VL D+ EE KE  L  HSEKLA+ F +
Sbjct: 576 GDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGI 635

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + TPPGTPI++ KNLR C DCH+A K+ISKI  R+I VRD +RFH F+D
Sbjct: 636 ISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFED 684



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 33/320 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-------- 59
           P+   Y  ++ AC     L LG+ VH       F   + + N L+ MY  C         
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 60  ----------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
                                 G +E  RK+FDEM +RD+ SW+A I GY       +A+
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 98  DLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           +LFR MQ       ++ T+ + L+A   +  L +GK +  ++ +  +N    + +AL+D+
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           + KCG +D+A  +F  M  R +VSWT++I      GR  E   LF +++++GV P++  F
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            G+L+AC+       G+E    M +  G  P       +V M  + G  + A     +M 
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAISALVHMYSKCGNTRVARRVFNEMH 383

Query: 277 IEANPIIWRTLISACCARGE 296
            + + + W +LI      G+
Sbjct: 384 -QPDLVSWTSLIVGYAQNGQ 402



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 5/250 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +++ GV PN++T+  VL ACA     +LGK VHG ++   +       + LVHMY  C G
Sbjct: 312 LMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKC-G 370

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
              + R+VF+EM + D VSW+++I GYA+ G   +A+  F  +  SG  PD++T V VLS
Sbjct: 371 NTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLS 430

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           ACT  G ++ G ++  S  EK  +  +      +ID+ A+ G   +A  +  +M  +   
Sbjct: 431 ACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDK 490

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             W S++ G  +HG  LE      + L    P +   ++ L +  ++ GL  +       
Sbjct: 491 FLWASLLGGCRIHG-NLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKD 549

Query: 239 MKNDFGIIPK 248
           M N  GI+ K
Sbjct: 550 MDN-MGIVKK 558


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/465 (41%), Positives = 290/465 (62%), Gaps = 3/465 (0%)

Query: 13  YPF--VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           YPF  VL AC G+G +N G+ +H  +++    D I+V + L+ MY  C+  +   + VFD
Sbjct: 268 YPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKC-LHYAKTVFD 326

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            M +++ VSW+AM+ GY + G + +A+ +F  MQ SG+ PD  T+   +SAC ++ +LE 
Sbjct: 327 RMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEE 386

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G           +   + + N+L+ ++ KCGD+D + +LF  MN R  VSWT++++  A 
Sbjct: 387 GSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQ 446

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
            GR +EA+ LF++M++ G+ PD V   G++SACS  GLV+KG+ YF+ M N++GI+P   
Sbjct: 447 FGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNG 506

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           HY CM+D+  RSGR++EA  FI  MP   + I W TL+SAC  +G L++ +   + LI  
Sbjct: 507 HYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 566

Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
           +P H + Y LLS IYA   +W+   ++R  M ++ ++K PG + I+   +++ F   D+S
Sbjct: 567 DPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDES 626

Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
              S +IY  L+E+ +K+   GY P TS V  D+ E  K   LN HSE+LAIAF L+  P
Sbjct: 627 SPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVP 686

Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            G PIR+ KNLRVC DCH+ATK IS +  REI+VRD  RFH FKD
Sbjct: 687 SGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 731



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 159/325 (48%), Gaps = 33/325 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++  +  + T   +LK  +  G ++LGK +HG V+K  F   + V + L+ MY S  G
Sbjct: 127 MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMY-SKVG 185

Query: 61  GIELGRKVFDEMSER------------------------------DSVSWSAMIGGYARL 90
            I   +KVF  + +R                              DSVSWSAMI G A+ 
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQN 245

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G+  +AI+ FR+M+I G+  D+    +VL AC  LGA+  G+ + + I +  +   + + 
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVG 305

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM+ KC  +  A  +F  M  + +VSWT+++ G    GR  EAV +F +M  +G+ 
Sbjct: 306 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGID 365

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD       +SAC++   +++G + F       G+I  I     +V +  + G + ++  
Sbjct: 366 PDHYTLGQAISACANISSLEEGSQ-FHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTR 424

Query: 271 FIQKMPIEANPIIWRTLISACCARG 295
              +M +  + + W  ++SA    G
Sbjct: 425 LFNEMNVR-DEVSWTAMVSAYAQFG 448



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 67/339 (19%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD-- 70
           Y   +K C G+G     K +HG +++     +  + N +VH Y      I   R+VFD  
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSI-YARRVFDGI 64

Query: 71  -----------------------------EMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
                                        ++ +RD V+W+ +I GY+  GL   A+  + 
Sbjct: 65  PQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 124

Query: 102 QMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK- 159
            M          +T++T+L   +  G + +GK +   + K      + + + L+DM++K 
Sbjct: 125 TMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 160 ------------------------------CGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
                                         CG ++ AL+LFR M  +  VSW+++I GLA
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLA 243

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
            +G   EA+  F EM   G+  D   F  +L AC   G ++ GR+    +     +   I
Sbjct: 244 QNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT-NLQDHI 302

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                ++DM C+   +  A     +M  + N + W  ++
Sbjct: 303 YVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMV 340


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/488 (41%), Positives = 288/488 (59%), Gaps = 31/488 (6%)

Query: 19  ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-------------------- 58
           A   I    +G  VH   +K     D++V+N  +H YG C                    
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200

Query: 59  -----------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
                       G + + R+VFD M  RD VSWS +IGGY + G    A+ +F+ M   G
Sbjct: 201 TWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG 260

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V  +E  +VT LSA   LG LE GK+V   +++  +  SV L  ALIDM++KCG V  A 
Sbjct: 261 VKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAK 320

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           ++F +M  R + +W S+I GLA HG G +AV LFE+ +  G  P  + FVG+L+ACS  G
Sbjct: 321 EVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTG 380

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           LVD+GR YF  M   + I  ++EHYGCMVD+L R+G V+EA E I+ M I  +P++W T+
Sbjct: 381 LVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTI 440

Query: 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +SAC   G + L  ++  +LI  +P H+  YVLL+ IYAK  +W++  K+R++M  RG  
Sbjct: 441 LSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTS 500

Query: 348 KIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE 407
           K  G +L+E    +++F+ GD +H  S  IY ML  + R++ +AGYVP  S VL DI +E
Sbjct: 501 KSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDE 560

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           +K  A+  HSE+LAIA+  +    G+PIRIVKNL VC DCH  +K ++K++ REIVVRD 
Sbjct: 561 EKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDG 620

Query: 468 HRFHHFKD 475
            RFHH KD
Sbjct: 621 SRFHHMKD 628


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 303/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +YG+ P+KFT+PFVLKAC+ +  +  GK +H  V++     D+ V   L+ MY  C G
Sbjct: 93  MRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKC-G 151

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VFD++ ERD V W++M+  Y++ G   +++ L R M  +G+ P E T V  ++
Sbjct: 152 CVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIA 211

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D G L  GK +  +  +     +  +  AL+DM+AK G V+ A  LF  +  + +VS
Sbjct: 212 ASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVS 271

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G AMHG   EA+ LF+EM +  V PD + FVG+L+ACSH GL+++G+ +F SM 
Sbjct: 272 WNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMI 330

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +DF I P ++HY CM+D+L   GR++EA++ I +M +E +  +W  L+ +C   G +++ 
Sbjct: 331 SDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMG 390

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++L+  EP    NYV+LS++YA+  +W+   ++R++M  +G+KK    + IE+ N+
Sbjct: 391 ELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNK 450

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+  D SH +S+ IY  L   G+ MK+AGY P    V  D+ +++K D ++ HSE+L
Sbjct: 451 VHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERL 510

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T  GT + I+KNLR+C DCH A KFISKI  REI +RD +R+HHFKD
Sbjct: 511 AIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKD 565



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 5/298 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L++C     +  GK +H  + +     +  +   LV++Y  C   +     +FD +
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNS-LTNAHLLFDRI 62

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           S+R+   W+ MI GYA  G    AI L+ QM+  G+ PD+ T   VL AC+ L A+E GK
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGK 122

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   + +  +   V +  ALIDM+AKCG V+ A ++F  ++ R +V W S++A  + +G
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNG 182

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEH 251
           +  E++AL   M   G+ P +  FV  ++A +  GL+ +G+E    S ++ F    K++ 
Sbjct: 183 QPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK- 241

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
              ++DM  +SG V  A    + +  E   + W  +I+     G    A  + K + G
Sbjct: 242 -TALMDMYAKSGSVNVARSLFELLE-EKRVVSWNAMITGYAMHGHANEALDLFKEMKG 297


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 300/501 (59%), Gaps = 33/501 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC--------- 58
           P+ FT   VL ACA +  L +GK +H  +L+        + N L+  Y            
Sbjct: 478 PDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI 537

Query: 59  ------------------EGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
                             EG ++LG     R++FD M+ RD ++W+AMI GY + G + +
Sbjct: 538 MDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDE 597

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A++LFR M + G  P+  T+  VLSAC  L  L+ GK +     + +  +SV + NA+I 
Sbjct: 598 AMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIIT 657

Query: 156 MFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           ++A+ G V  A ++F  +  R   ++WTS+I  +A HG G +AV LFEEM+  GV PD +
Sbjct: 658 VYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHI 717

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            +VG+LSAC+H G VDKG+ Y++ M+N+ GI+P++ HY CMVD+  R+G + EAHEFIQ+
Sbjct: 718 TYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQR 777

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP+  + ++W +L++AC  R    LAE    +L+  +P +   Y  L+++Y+   RW   
Sbjct: 778 MPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDA 837

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
            +I ++   +G+KK  G +   +  +++ F   D  H Q   IY    EM  ++KKAG+V
Sbjct: 838 ARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFV 897

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
           P  + VL D+++E KE+ L++HSEKLAIAF L+ TP  T +RI+KNLRVCNDCH+A KFI
Sbjct: 898 PDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFI 957

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK  +REI+VRD  RFHHF+D
Sbjct: 958 SKFVDREIIVRDATRFHHFRD 978



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 159/363 (43%), Gaps = 73/363 (20%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G +P++FT   VL +CA +    +G+ VH  V+K      + V N++++MYG C  
Sbjct: 338 MVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGD 397

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       +G +EL   +F+ M ER  VSW+ +I GY + 
Sbjct: 398 AETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQN 457

Query: 91  GLSTDAIDLF-RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           GL   A+  F R +  S + PD  T+ +VLSAC +L  L++GK + S+I +  +  S  +
Sbjct: 458 GLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQI 517

Query: 150 CNALIDMFAKCG---------------------------------DVDKALKLFRSMNGR 176
            NALI  +AK G                                 D  +A ++F  MN R
Sbjct: 518 MNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNR 577

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY- 235
            +++WT++I G   +G+  EA+ LF  M+  G  P+      +LSAC+    +D G++  
Sbjct: 578 DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIH 637

Query: 236 ---FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
                S++        +     ++ +  RSG V  A     ++      I W ++I A  
Sbjct: 638 CKAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMA 692

Query: 293 ARG 295
             G
Sbjct: 693 QHG 695



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 147/300 (49%), Gaps = 11/300 (3%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N+L+ +Y    G +     VF EM +RD+VSW+ MI G  R G   DA+  F  M   G 
Sbjct: 285 NSLLSLYAK-SGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGF 343

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P + T+  VLS+C  + A  VG+ V  F+ K  ++  V + N+++ M+ KCGD + A  
Sbjct: 344 APSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARA 403

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  R++ SW  +++     GR   AV++FE M+E  +    V++  +++  +  GL
Sbjct: 404 VFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQNGL 459

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV----KEAHEFIQKMPIEANPIIW 284
                ++F  M +   + P       ++   C + R+    K+ H +I +  +  +  I 
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSA-CANLRMLKMGKQMHSYILRTGMPCSSQIM 518

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             LIS     G ++ A  I  + +  + ++  ++  L   Y KL   ++  +I ++M+ R
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVAD-LNVISFTALLEGYVKLGDTKQAREIFDIMNNR 577



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN  T   VL ACA +  L+ GK +H   ++      + V N ++ +Y    G
Sbjct: 605 MILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYAR-SG 663

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            + L R+VFD++  R ++++W++MI   A+ GL   A+ LF +M   GV PD IT V VL
Sbjct: 664 SVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVL 723

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
           SAC   G ++ GK + E    +  +   +     ++D+ A+ G + +A +  + M     
Sbjct: 724 SACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPD 783

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            V W S++A   +  +  +   L    L +  P +  A+  L +  S CG
Sbjct: 784 TVVWGSLLAACRVR-KNADLAELAAGKLLSIDPHNSGAYSALANVYSACG 832


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/471 (42%), Positives = 290/471 (61%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  +++T+  +L AC  +  L  GK +H  + +  + D++ V + LV MY  C   + L
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRS-VRL 330

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF  M  ++ +SW+AMI GY + G   +A+ +F +MQ  G+ PD+ T+ +V+S+C +
Sbjct: 331 AEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCAN 390

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G           +   V + NAL+ ++ KCG ++ A +LF  M+    VSWT++
Sbjct: 391 LASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 450

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + G A  G+  E + LFE+ML  GV PD V F+G+LSACS  GLVDKGR YF SM+ D  
Sbjct: 451 VMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHD 510

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P  +HY CM+D+  RSG +K+A EFI++MP   +   W TL+SAC  RG++++ +   
Sbjct: 511 IVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAA 570

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L+  +P + ++YVLL  ++A    W    K+R  M  R +KK PG + I+  N+++ F
Sbjct: 571 ENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIF 630

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D+SH  S+ IYE L  +  KM + GY P  S VL D+ + +K   L+ HSEKLAIAF
Sbjct: 631 SADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAF 690

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+  PP  PIRIVKNLRVC DCH+ATKFISKI  R+I+VRD  RFH F +
Sbjct: 691 GLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSN 741



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 34/327 (10%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E GV P++ T   V+   + +GD  LG+ VH  +L+  FG      + LV MY    G I
Sbjct: 138 EAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKV-GPI 196

Query: 63  ELGRKVFDEMS-------------------------------ERDSVSWSAMIGGYARLG 91
              R+VFDEM                                ERDS++W+ M+ G  + G
Sbjct: 197 GDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNG 256

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L ++A+D+FR+M+  GV  D+ T  ++L+AC  L ALE GK + ++I +     +V + +
Sbjct: 257 LESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGS 316

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           AL+DM++KC  V  A  +FR M  + I+SWT++I G   +G G EAV +F EM   G+ P
Sbjct: 317 ALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKP 376

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           DD     ++S+C++   +++G + F  +    G+ P +     +V +  + G +++AH  
Sbjct: 377 DDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRL 435

Query: 272 IQKMPIEANPIIWRTLISACCARGELK 298
             +M    + + W  L+      G+ K
Sbjct: 436 FDEMSFH-DQVSWTALVMGYAQFGKAK 461



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 133/318 (41%), Gaps = 43/318 (13%)

Query: 28  LGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGG 86
           L  +VH  +L+        ++ NTL+  Y S  G +   R+VFD M  R+ V+ ++++  
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYAS-SGLLPHARRVFDAMPGRNLVTGNSLLSA 86

Query: 87  YARLGLSTDAIDLFRQMQI---------------------------------SGVCPDEI 113
            AR GL  D   LF  +                                   +GV P  I
Sbjct: 87  LARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRI 146

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           TM  V+   + LG   +G+ V   I +          + L+DM+AK G +  A ++F  M
Sbjct: 147 TMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
            G+ +V   ++I GL       EA ALFE + E     D + +  +++  +  GL  +  
Sbjct: 207 EGKNVVMCNTMITGLLRCKMVAEARALFEAIEER----DSITWTTMVTGLTQNGLESEAL 262

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVD---MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           + F  M+ + G+      +G ++     L      K+ H +I +   E N  +   L+  
Sbjct: 263 DVFRRMRAE-GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDM 321

Query: 291 CCARGELKLAESITKRLI 308
                 ++LAE++ +R++
Sbjct: 322 YSKCRSVRLAEAVFRRMM 339


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/469 (40%), Positives = 290/469 (61%), Gaps = 4/469 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T+  +L AC  + DL  G+++H  V +  +  D+ + N L++MY  C   +E  R+
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ +  RD ++W+ +I  Y + G + DA+D+F+QMQ+  V P+EIT+  VLSAC  LGA
Sbjct: 322 VFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
              GK V + I        V L N+L++M+ +CG +D  + +F ++  +++VSW+++IA 
Sbjct: 382 KRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAA 441

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A HG     +  F E+L+ G+  DDV  V  LSACSH G++ +G + F SM  D G+ P
Sbjct: 442 YAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAP 501

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
              H+ CMVD+L R+GR++ A   I  MP   + + W +L+S C    + K A  +  +L
Sbjct: 502 DYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561

Query: 308 IGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
              E   E S   LLS++YA+  RW+    +R+  ++R  +K PG + IE+++ ++EFV 
Sbjct: 562 FELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIEINDTVHEFVA 618

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GDKSH + + I   +  + ++MK AGYVP    VL ++ EE+KE  L  HSEKLAIA+ L
Sbjct: 619 GDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGL 678

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + TPPGTP+ IVKNLR C DCH+A KFIS+I  R+IVVRD  RFHHF++
Sbjct: 679 ISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 135/230 (58%), Gaps = 2/230 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T+   L AC+ +GD++ G+ +    +   +  D  VQN L++MY  C G +E 
Sbjct: 158 GMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC-GSLES 216

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVFD +  RD ++W+ MI GYA+ G +T A++LF++M  +   P+ +T + +L+ACT+
Sbjct: 217 ARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTS 183
           L  LE G+ +   +++      + + N L++M+ KC   +++A ++F  +  R +++W  
Sbjct: 277 LEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNI 336

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           +I     +G+  +A+ +F++M    V P+++    +LSAC+  G   +G+
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGK 386



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 166/312 (53%), Gaps = 8/312 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           M+  G+ P+   +   +  C+   DL  G+ +H  +L+ Q  + DI +   L+ MY  C 
Sbjct: 49  MVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCR 108

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM---QISGVCPDEITMV 116
             +EL RK FDEM ++  V+W+A+I GY+R G    A+ +++ M      G+ PD IT  
Sbjct: 109 D-LELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           + L AC+ +G +  G+ +E+            + NALI+M++KCG ++ A K+F  +  R
Sbjct: 168 SALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +++W ++I+G A  G   +A+ LF+ M      P+ V F+GLL+AC++   +++GR   
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH 287

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCR-SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +K + G    +     +++M  + S  ++EA +  +++    + I W  LI A    G
Sbjct: 288 RKVK-EHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYG 345

Query: 296 ELKLAESITKRL 307
           + K A  I K++
Sbjct: 346 QAKDALDIFKQM 357



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
           MYG C G +     VF  +   +SVSW+ ++  +AR G   +A+  +R+M + G+ PD  
Sbjct: 1   MYGKC-GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGA 59

Query: 114 TMVTVLSACTDLGALEVGKWVESFI-EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
             V  +  C+    L+ G+ + + I E Q++   + L  ALI M+A+C D++ A K F  
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLV 229
           M  +T+V+W ++IAG + +G    A+ ++++M+     G+ PD + F   L ACS  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            +GRE  ++     G          +++M  + G ++ A +   ++    + I W T+IS
Sbjct: 180 SQGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 290 ACCARGELKLAESITKRLIGNEP 312
               +G    A  + +R+  N+P
Sbjct: 238 GYAKQGAATQALELFQRMGPNDP 260



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+PN+ T   VL ACA +G    GK+VH  +   +   D+ ++N+L++MY  C G ++  
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRC-GSLDDT 420

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF  + ++  VSWS +I  YA+ G S   ++ F ++   G+  D++TMV+ LSAC+  
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCN------ALIDMFAKCGDVDKALKLFRSMNG-RTI 178
           G L+ G  V+SF+   MV    GL         ++D+ ++ G ++ A  L   M      
Sbjct: 481 GMLKEG--VQSFL--SMVGDH-GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDA 535

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           V+WTS+++G  +H     A  + +++ E     D+ + V LLS
Sbjct: 536 VAWTSLLSGCKLHNDTKRAARVADKLFELE-SEDEHSTVTLLS 577


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 296/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P+  TY  +L     +GDL+LGK +H  + K  F  +I V NTLV MY  C G
Sbjct: 407 MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKC-G 465

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVF+ M  RD ++W+ +I            + +  +M+  GV PD  TM+++L 
Sbjct: 466 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 525

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ L A   GK +   I K  +   V + N LI+M++KCG +  + ++F+ M  + +V+
Sbjct: 526 VCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVT 585

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+   M+G G +AV  F EM  AG+ PD VAFV ++ ACSH GLV++G  YF  MK
Sbjct: 586 WTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMK 645

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P+IEHY C+VD+L RS  + +A +FI  MP++ +  IW  L+SAC   G+ ++A
Sbjct: 646 KDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIA 705

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +++R+I   P     YVL+S+IYA L +W++   IR+ +  RG+KK PG + +E+ N+
Sbjct: 706 ERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNK 765

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F  G K   Q +E+ ++L  +   M K GY+     VL DI+E++K D L  HSE+L
Sbjct: 766 VYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERL 825

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGTP++++KNLRVC DCH+ TK+ISKI  RE++VRD +RFH FKD
Sbjct: 826 AIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKD 880



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 5/303 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ +T   VL+AC G+G +  G  +HG + K     D+ V N L+ MY    G I+ 
Sbjct: 211 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID- 269

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR++FD+M  RD+VSW+ MI GY+++GL  ++I LF +M ++   PD +T+ ++L AC  
Sbjct: 270 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGH 328

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG LE GK+V  ++            N LI+M+AKCG++  + ++F  M  +  VSW S+
Sbjct: 329 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 388

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I     +G   EA+ LF +M++  V PD V +V LLS  +  G +  G+E    +    G
Sbjct: 389 INVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MG 446

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               I     +VDM  + G + ++ +  + M    + I W T+I++C    +  L   + 
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMI 505

Query: 305 KRL 307
            R+
Sbjct: 506 SRM 508



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIEL 64
           + P+ +T+P V+ ACAG+ D  + KS+H  VL   FG D+++ N L+ MY  C    ++ 
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMY--CRFNDLDK 168

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVF+EM  RD VSW+++I GY   G   +A++++ + +  GV PD  TM +VL AC  
Sbjct: 169 ARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGG 228

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG++E G  +   IEK  + + V + N L+ M+ K   +    ++F  M  R  VSW ++
Sbjct: 229 LGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTM 288

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G +  G   E++ LF EM+     PD +    +L AC H G ++ G+   D M    G
Sbjct: 289 ICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-G 346

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                     +++M  + G +  + E    M  + + + W ++I+     G    A  + 
Sbjct: 347 YECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLF 405

Query: 305 KRLIGNEPMHESNYVLLSHIYAKL 328
           K +  +       YV+L  +  +L
Sbjct: 406 KMMKTDVKPDSVTYVMLLSMSTQL 429



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   +L+AC  +GDL  GK VH  ++   +  D    N L++MY  C G +   ++
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC-GNLLASQE 372

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  M  +DSVSW++MI  Y + G   +A+ LF+ M+ + V PD +T V +LS  T LG 
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGD 431

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +GK +   + K   N ++ + N L+DM+AKCG++  +LK+F +M  R I++W ++IA 
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
                     + +   M   GV PD    + +L  CS      +G+E    +    G+  
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLES 550

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +     +++M  + G ++ + +  + M  + + + W  LISAC   GE K A
Sbjct: 551 DVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKA 602



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 6/239 (2%)

Query: 68  VFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VF   S  ++V  W+++I      GL ++A+ L+ + Q   + PD  T  +V++AC  L 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
             E+ K +   +        + + NALIDM+ +  D+DKA K+F  M  R +VSW S+I+
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G   +G   EA+ ++      GV PD      +L AC   G V++G +    +    GI 
Sbjct: 190 GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIK 248

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             +     ++ M C+   + +      KM +  + + W T+I   C   ++ L E   K
Sbjct: 249 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLR-DAVSWNTMI---CGYSQVGLYEESIK 303


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 302/477 (63%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCE 59
           M   GV P+  T   +    A +G+    +S+HG V +   F  DI + N ++ MY    
Sbjct: 332 MHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKL- 390

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTV 118
           G I+  RKVF+ +  +D +SW+++I GY++ GL+ +AID++  M+  SG  P++ T V++
Sbjct: 391 GFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSI 450

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L+A + LGAL+ G      + K  +   + +   L+DM+ KCG +  AL LF  +  ++ 
Sbjct: 451 LTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS 510

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW ++I+   +HG GL+AV LF+EM   GV PD + FV LLSACSH GLVD+G+  F  
Sbjct: 511 VSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQL 570

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  +GI P ++HYGCMVD+  R+G +++A  F++ MP+  +  +W  L+ AC     ++
Sbjct: 571 MQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVE 630

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L  +++  L+  E  +   YVLLS+IYAKL  WE   ++R +   RG+KK PG + IE+D
Sbjct: 631 LVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVD 690

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +I  F  G+++H + +EIY  L  +  KMK  GYVP  + VL D+ +++KE+ L  HSE
Sbjct: 691 KKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSE 750

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LA+AF ++ TPP T ++I KNLRVC DCH+ATKFISKI  REI+VRD +RFHHFKD
Sbjct: 751 RLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKD 807



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 5/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  + +T+P V++AC   G+L+ G+ VH  VLK  F  D+++  + +H Y S  G + L 
Sbjct: 138 LQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDVYIAASFIHFY-SRFGFVSLA 193

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             +FD M  RD  +W+AMI G+   G   +A+++F +M+   V  D +T+ ++L  C  L
Sbjct: 194 CNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQL 253

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  G  +  +  K  +   + +CNALI+M+AK G++  A  +F  M  R IVSW S++
Sbjct: 254 DDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLL 313

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           A    + + + A+ ++ +M   GV PD +  V L S  +  G     R     +      
Sbjct: 314 AAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWF 373

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +  I     ++DM  + G +  A +  + +P++ + I W +LI+     G
Sbjct: 374 LHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITGYSQNG 422



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 13/269 (4%)

Query: 26  LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIG 85
           ++L K +H  ++       I +   L++ Y    G I   R  FD++  +D  +W++MI 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFL-GDIPHARLTFDQIQTKDVYTWNSMIS 114

Query: 86  GYARLGLSTDAIDLFRQ-MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
            YAR+G    A+D F + +  S +  D  T   V+ AC   G L+ G+ V   + K    
Sbjct: 115 AYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFE 171

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
             V +  + I  +++ G V  A  LF +M  R I +W ++I+G  ++G+  EA+ +F+EM
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEM 231

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
               V  D V    LL  C     +  G     Y   +  +F +         +++M  +
Sbjct: 232 RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV----CNALINMYAK 287

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G ++ A     +M +  + + W +L++A
Sbjct: 288 FGELRSAETIFNQMKVR-DIVSWNSLLAA 315


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 299/510 (58%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYG 56
           M+   V  ++FT+  VL ACA  G    GKSVHG +++ Q        + V N LV +Y 
Sbjct: 291 MVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLY- 349

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSA-------------------------------MIG 85
           S  G I + +++FD M+ +D VSW+                                M+ 
Sbjct: 350 SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVS 409

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GY   GLS DA+ LF QM+   V P + T    ++AC +LGAL+ G+ + + + +     
Sbjct: 410 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 469

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S    NAL+ M+AKCG V+ A  +F  M     VSW ++I+ L  HG G EA+ LF++M+
Sbjct: 470 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 529

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ PD ++F+ +L+AC+H GLVD+G  YF+SMK DFGI P  +HY  ++D+L RSGR+
Sbjct: 530 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 589

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
            EA + I+ MP E  P IW  ++S C   G+++       +L    P H+  Y+LLS+ Y
Sbjct: 590 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTY 649

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           +   RW    ++R++M  RG+KK PG + IE+ ++I+ F+ GD  H +++E+Y+ L+ +G
Sbjct: 650 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIG 709

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +M+K GYVP T  VL D+   +KE  L  HSEKLA+ F LLK PPG  + ++KNLR+C 
Sbjct: 710 ARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICG 769

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+A  F+SK   REIVVRD  RFHHFKD
Sbjct: 770 DCHTAMMFMSKAVGREIVVRDVRRFHHFKD 799



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 74/373 (19%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------ 59
           P+ +++  ++ A   + +L       +H +VLK      + V N L+ +Y  C+      
Sbjct: 161 PDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASW 220

Query: 60  ---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                      G +   R VF+E+  +  V W+AMI GY + G+
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVG 148
             DA +LFR+M    V  DE T  +VLSAC + G    GK V   I +   N     ++ 
Sbjct: 281 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 340

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA------------------- 189
           + NAL+ +++K G +  A ++F +MN + +VSW ++++G                     
Sbjct: 341 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 400

Query: 190 -----------MHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
                      +HG GL  +A+ LF +M    V P D  + G ++AC   G +  GR+  
Sbjct: 401 DLSWMVMVSGYVHG-GLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 459

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +    G          ++ M  + G V +A      MP   + + W  +ISA    G 
Sbjct: 460 AHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHGH 517

Query: 297 LKLAESITKRLIG 309
            + A  +  +++ 
Sbjct: 518 GREALELFDQMVA 530



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 43/291 (14%)

Query: 57  SCEGGIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEI 113
           +  G +      FD +  + RD+V  +AM+  +AR  L+  A+ +F  +  SG + PD+ 
Sbjct: 105 AAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDY 164

Query: 114 TMVTVLSACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKC----------- 160
           +   ++SA   +  L      +    + K      + + NALI ++ KC           
Sbjct: 165 SFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARK 224

Query: 161 -----------------------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
                                  GDV+ A  +F  ++G+  V W ++I+G    G   +A
Sbjct: 225 VLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADA 284

Query: 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS---MKNDFGIIPKIEHYGC 254
             LF  M+   VP D+  F  +LSAC++ G    G+        ++ +F     +     
Sbjct: 285 FELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNA 344

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +V +  + G++  A      M ++ + + W T++S     G L  A  + K
Sbjct: 345 LVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDSGCLDKAVEVFK 394


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 301/481 (62%), Gaps = 7/481 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           M   GV  ++FTY +VLKAC      +  L  GK +H  + +  +   +++  TLV MY 
Sbjct: 169 MNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA 228

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEIT 114
              G ++    VF  M  R+ VSWSAMI  YA+ G + +A+  FR+M  +     P+ +T
Sbjct: 229 RF-GCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           MV+VL AC  L ALE GK +  +I ++ ++  + + +AL+ M+ +CG ++   ++F  M+
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSW S+I+   +HG G +A+ +FEEML  G  P  V FV +L ACSH GLV++G+ 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F++M  D GI P+IEHY CMVD+L R+ R+ EA + +Q M  E  P +W +L+ +C   
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G ++LAE  ++RL   EP +  NYVLL+ IYA+   W++  +++++++ RG++K+PG   
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +E+  ++Y FV  D+ +   ++I+  L ++   MK+ GY+P T  VL ++  E+KE  + 
Sbjct: 528 MEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVL 587

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLA+AF L+ T  G PIRI KNLR+C DCH  TKFISK   +EI+VRD +RFH FK
Sbjct: 588 GHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFK 647

Query: 475 D 475
           +
Sbjct: 648 N 648



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 25/318 (7%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           SP++ TY  ++  C     L+    VH  +L      D  +   L+ MY    G ++  R
Sbjct: 74  SPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL-GSVDYAR 132

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--- 123
           KVFD+  +R    W+A+       G   + + L+ +M   GV  D  T   VL AC    
Sbjct: 133 KVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE 192

Query: 124 -DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +  L  GK + + + ++  +  V +   L+DM+A+ G VD A  +F  M  R +VSW+
Sbjct: 193 CTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWS 252

Query: 183 SVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKG-------- 232
           ++IA  A +G+  EA+  F EM+       P+ V  V +L AC+    +++G        
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYIL 312

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R   DS      I+P I     +V M  R G+++       +M  + + + W +LIS+  
Sbjct: 313 RRGLDS------ILPVI---SALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYG 362

Query: 293 ARGELKLAESITKRLIGN 310
             G  K A  I + ++ N
Sbjct: 363 VHGYGKKAIQIFEEMLAN 380


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 292/505 (57%), Gaps = 36/505 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYGSCEGG 61
           V  ++FT+  VL ACA +G    GKSVHG +++ Q        + V N LV  Y  C G 
Sbjct: 290 VPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKC-GN 348

Query: 62  IELGRKVFDEMSERDSVSWSA-------------------------------MIGGYARL 90
           I + R++FD M+ +D VSW+                                M+ GY   
Sbjct: 349 IAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G + DA+ LF +M+   V P + T    ++AC +LGAL+ GK +   I +     S    
Sbjct: 409 GFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAG 468

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI M+A+CG V +A  +F  M     VSW ++I+ L  HG G EA+ LF+ M+  G+ 
Sbjct: 469 NALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD ++F+ +L+AC+H GLVD+G  YF+SMK DFGIIP  +HY  ++D+L R+GR+ EA +
Sbjct: 529 PDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARD 588

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MP E  P IW  ++S C   G+++L      +L    P H+  Y+LLS+ Y+    
Sbjct: 589 LIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGC 648

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    ++R++M  RG+KK PG + IE  N+++ F+ GD  H ++ E+Y+ L+ +G KM+K
Sbjct: 649 WVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRK 708

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GYVP T  VL D+    KE  L  HSE+LA+ F LL  PPG  + ++KNLR+C+DCH+A
Sbjct: 709 LGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAA 768

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
             F+SK   REIVVRD  RFHHFKD
Sbjct: 769 IMFMSKAVGREIVVRDVRRFHHFKD 793



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 72/372 (19%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG--GIE 63
           P+ +++  +L A   + ++++     +H +VLK   G  + V N LV +Y  CE      
Sbjct: 155 PDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATR 214

Query: 64  LGRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGL 92
             RKV DEM  +D ++W+                               AMI GY   G+
Sbjct: 215 DARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGM 274

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVG 148
           + +A +LFR+M +  V  DE T  +VLSAC ++G    GK V   I +   N     ++ 
Sbjct: 275 AVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALP 334

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA------------------- 189
           + NAL+  ++KCG++  A ++F +M  + +VSW ++++G                     
Sbjct: 335 VNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 190 -----------MHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
                      +HG   E A+ LF +M    V P D  + G ++AC   G +  G++   
Sbjct: 395 ELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHG 454

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +    G          ++ M  R G VKEAH     MP   + + W  +ISA    G  
Sbjct: 455 HIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGHG 512

Query: 298 KLAESITKRLIG 309
           + A  +  R++ 
Sbjct: 513 REALELFDRMVA 524



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 5/236 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V P  +TY   + AC  +G L  GK +HG +++  F       N L+ MY  C G
Sbjct: 421 MRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC-G 479

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    +F  M   DSVSW+AMI    + G   +A++LF +M   G+ PD I+ +TVL+
Sbjct: 480 AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G ++ ES      +         LID+  + G + +A  L ++M      
Sbjct: 540 ACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG-LVDKGR 233
           S W ++++G    G  +E  A   + L    P  D  ++ L +  S  G  VD  R
Sbjct: 600 SIWEAILSGCRTSG-DMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAAR 654



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 41/257 (15%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVG 131
           + RD+V  +A+I  YAR   +  A+ +FR +  SG + PD+ +   +LSA   L  + V 
Sbjct: 117 ARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVR 176

Query: 132 KWVE--SFIEKQMVNRSVGLCNALIDMFAKC----------------------------- 160
              +    + K     ++ +CNAL+ ++ KC                             
Sbjct: 177 HCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVV 236

Query: 161 -----GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                GDV  A  +F  ++G+  V W ++I+G    G  +EA  LF  M+   VP D+  
Sbjct: 237 GYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT 296

Query: 216 FVGLLSACSHCGLVDKGREYFDS---MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           F  +LSAC++ GL   G+        ++ +F     +     +V    + G +  A    
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 273 QKMPIEANPIIWRTLIS 289
             M ++ + + W T++S
Sbjct: 357 DNMTLK-DVVSWNTILS 372


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/505 (41%), Positives = 311/505 (61%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P+ +    +LKAC     L  G+ VH   LK  F  +  V+  ++ +YG C G
Sbjct: 138 MLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKC-G 196

Query: 61  GIELGRKVFDEMSE------------------------------RDSVSWSAMIGGYARL 90
            +   R+VF+EM E                              +D+V W+AMI G+ R 
Sbjct: 197 ELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
             +  A++ FR MQ   V P+E T+V VLSAC+ LGALE+G+WV S++ K  +  ++ + 
Sbjct: 257 EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI+M+++CG +D+A  +F  M  R ++++ ++I+GL+M+G+  +A+ LF  M+   + 
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 376

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P +V FVG+L+ACSH GLVD G E F SM  D+ + P+IEHYGCMVD+L R GR++EA++
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYD 436

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ M +  + I+  TL+SAC     L+L E + K L          YVLLSH+YA   +
Sbjct: 437 LIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGK 496

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W++  ++R  M + GM+K PG + IE++NEI+EF+ GD  H Q + IYE L+E+ R ++ 
Sbjct: 497 WKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRL 556

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P    VL DI + +KE AL  HSE+LAI + L+ T P T IR++KNLRVC DCHSA
Sbjct: 557 EGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSA 616

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K I+KI  R+IVVRDR+RFH+F++
Sbjct: 617 IKLIAKITRRKIVVRDRNRFHYFEN 641



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 37/310 (11%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  +++     D  +   L+     C   I+   ++F      +   ++A+I G+   G
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHA-IDYASRIFQYTHNPNVYLYTALIDGFVSSG 126

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ--MVNRSVGL 149
              +AI L+ +M    + PD   M ++L AC    AL  G+ V S   K     NR V L
Sbjct: 127 NYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRL 186

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVS----------------------------- 180
              +++++ KCG++  A ++F  M    + S                             
Sbjct: 187 --RIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244

Query: 181 -WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            WT++I G   +     A+  F  M    V P++   V +LSACS  G ++ GR +  S 
Sbjct: 245 CWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR-WVHSY 303

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
              F I   +     +++M  R G + EA     +M  + + I + T+IS     G+ + 
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQ 362

Query: 300 AESITKRLIG 309
           A  + + ++G
Sbjct: 363 AIELFRVMVG 372


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 299/475 (62%), Gaps = 4/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GVS N  T   ++  CAG   L  G S+H   ++F    D+ V N L+ MY  C G
Sbjct: 150 MRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRC-G 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RK+FD M E+  ++W+AMI GYA+ GL+   +DL+R+M+ +G+ PD +T+V VLS
Sbjct: 209 SVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLS 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGA   G+ VE  IE      +  L NALI+M+A+CG++ KA  +F  M  + ++S
Sbjct: 269 SCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVIS 328

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++IAG  MHG+G  AV LF+EM+ +   PD  AFV +LSACSH GL +KG  YF +M+
Sbjct: 329 WTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAME 388

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+G+ P  EHY C+VD+L R+GR++EA + I  M +E +  +W  L+ AC     ++LA
Sbjct: 389 RDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELA 448

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +++I  EP +   YVLLS+I+++    E   ++R +M +R +KK PG + +E    
Sbjct: 449 ELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGR 508

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD++H Q++EIY MLD +   +K+ G      +   +   E+    +  HSEKL
Sbjct: 509 IHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQ---ESRNEELITGMGVHSEKL 565

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T PGT I ++KNLRVC DCH   K +S+I +R++VVRD  RFHHFK+
Sbjct: 566 AIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKN 620



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G SPN FT+PF  K+CA +     G  +HG V+K     +  VQ +L+ MY  C  
Sbjct: 47  MLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCS- 105

Query: 61  GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            I   RKVFDE   S   +V ++A+I GY+     +DA+ LFRQM+  GV  + +TM+ +
Sbjct: 106 TIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGL 165

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  C     L  G  + +   +  ++  + + N L+ M+ +CG VD A KLF  M  + +
Sbjct: 166 IPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGL 225

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           ++W ++I+G A +G     + L+ +M   G+ PD V  VG+LS+C+H G    GRE    
Sbjct: 226 ITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQR 285

Query: 239 MK-NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           ++ + FG  P +++   +++M  R G + +A      M  E N I W  +I+     G+ 
Sbjct: 286 IELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGM-TEKNVISWTAIIAGYGMHGQG 342

Query: 298 KLAESITKRLIGNEPM 313
           +LA  +   +I ++ +
Sbjct: 343 ELAVQLFDEMISSDEL 358



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           +  + SW+A +   AR     +A++L+ QM  SG  P+  T      +C  L     G  
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTI-VSWTSVIAGLAMH 191
           +   + K        +  +LI M+ KC  +  A K+F  + + R + V + ++IAG +++
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS---HCGLVDKGREYFDSMKNDFGIIPK 248
            R  +AV LF +M + GV  + V  +GL+  C+   H G          +    FG+   
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTS----LHACSVRFGLDGD 193

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +    C++ M  R G V  A +    MP E   I W  +IS     G
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISGYAQNG 239


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/477 (41%), Positives = 299/477 (62%), Gaps = 7/477 (1%)

Query: 5   GVSPNKFTYPFVLKACA----GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           G   ++FTY +VLKAC      +  L  GK +H  +L+  +  +IHV  TL+ +Y    G
Sbjct: 174 GTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKF-G 232

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV--CPDEITMVTV 118
            +     VF  M  ++ VSWSAMI  +A+  +   A++LF+ M        P+ +TMV +
Sbjct: 233 SVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNM 292

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC  L ALE GK +  +I ++ ++  + + NALI M+ +CG+V    ++F +M  R +
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDV 352

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S+I+   MHG G +A+ +FE M+  GV P  ++F+ +L ACSH GLV++G+  F+S
Sbjct: 353 VSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFES 412

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M + + I P +EHY CMVD+L R+ R+ EA + I+ M  E  P +W +L+ +C     ++
Sbjct: 413 MLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVE 472

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE  +  L   EP +  NYVLL+ IYA+   W +   + ++++ RG++K+PG + IE+ 
Sbjct: 473 LAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVK 532

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            ++Y FV  D+ + Q +EI+ +L ++  +MK  GYVP T+ VL D++EE+KE  +  HSE
Sbjct: 533 RKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSE 592

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+ T  G  IRI KNLR+C DCH+ TKFISK  NREI+VRD +RFHHF+D
Sbjct: 593 KLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRD 649



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 15/311 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P + T+  ++ +CA    L+ G  VH  ++   F  D  +   L++MY    G I+   
Sbjct: 75  NPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYEL-GSIDRAL 133

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--- 123
           KVFDE  ER    W+A+    A +G   + +DL+ QM   G   D  T   VL AC    
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSE 193

Query: 124 -DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +  L  GK + + I +     ++ +   L+D++AK G V  A  +F +M  +  VSW+
Sbjct: 194 LSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 183 SVIAGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFD 237
           ++IA  A +   ++A+ LF+ M+       P+ V  V +L AC+    +++G+    Y  
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYIL 313

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
             + D  I+P +     ++ M  R G V         M  + + + W +LIS     G  
Sbjct: 314 RRQLD-SILPVL---NALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLISIYGMHGFG 368

Query: 298 KLAESITKRLI 308
           K A  I + +I
Sbjct: 369 KKAIQIFENMI 379


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/474 (41%), Positives = 297/474 (62%), Gaps = 2/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLEYG+ P+ FT PFVLKAC+ +  +  G+ +H  V++  +  D+ V   LV MY  C G
Sbjct: 150 MLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKC-G 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFD++ +RD+V W++M+  YA+ G   +++ L  +M   GV P E T+VTV+S
Sbjct: 209 CVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVIS 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +  D+  L  G+ +  F  +     +  +  ALIDM+AKCG V  A  LF  +  + +VS
Sbjct: 269 SSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVS 328

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G AMHG  +EA+ LFE M++    PD + FVG L+ACS   L+D+GR  ++ M 
Sbjct: 329 WNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMV 387

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P +EHY CMVD+L   G++ EA++ I++M +  +  +W  L+++C   G ++LA
Sbjct: 388 RDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELA 447

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++LI  EP    NYV+L+++YA+  +WE   ++R++M  +G+KK    + IE+ N+
Sbjct: 448 EVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNK 507

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD SH  S  IY  L  +   M++AGYVP T  V  D+ E++K D +  HSE+L
Sbjct: 508 VYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERL 567

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIAF L+ T PGT + I KNLR+C DCH A KFISKI  REI VRD +R+HHF+
Sbjct: 568 AIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFR 621



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 7   SP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           SP N + Y  +L++C     L  GK +H  + +     ++ +   LV+ Y  C   +   
Sbjct: 54  SPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVC-NSLRNA 112

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             +FD++ + +   W+ +I  YA  G    AI L+ QM   G+ PD  T+  VL AC+ L
Sbjct: 113 HHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSAL 172

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  G+ +   + +    R V +  AL+DM+AKCG V  A  +F  +  R  V W S++
Sbjct: 173 STIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSML 232

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFG 244
           A  A +G   E+++L  EM   GV P +   V ++S+ +    +  GRE      ++ F 
Sbjct: 233 AAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQ 292

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
              K++    ++DM  + G VK A    +++  E   + W  +I+     G    A  + 
Sbjct: 293 YNDKVK--TALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITGYAMHGLAVEALDLF 349

Query: 305 KRLIGN-EPMH 314
           +R++   +P H
Sbjct: 350 ERMMKEAQPDH 360


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 299/467 (64%), Gaps = 1/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +++T+  VL AC G+  L  GK VH  +++  + D+I V + LV MY  C+  I+    V
Sbjct: 273 DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS-IKSAETV 331

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F +M+ ++ VSW+AM+ GY + G S +A+ +F  MQ +G+ PD+ T+ +V+S+C +L +L
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASL 391

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E G           +   + + NAL+ ++ KCG ++ + +LF  M+    VSWT++++G 
Sbjct: 392 EEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGY 451

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A  G+  E + LFE ML  G  PD V F+G+LSACS  GLV KG + F+SM  +  IIP 
Sbjct: 452 AQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPI 511

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            +HY CM+D+  R+GR++EA +FI KMP   + I W +L+S+C     +++ +   + L+
Sbjct: 512 EDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLL 571

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EP + ++Y+LLS IYA   +WE+   +R+ M  +G++K PG + I+  N+++ F   D
Sbjct: 572 KLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADD 631

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           +S+  S +IY  L+++  KM + GYVP  + VL D+++ +K   LN HSEKLAIAF L+ 
Sbjct: 632 QSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIF 691

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            PPG PIR+VKNLRVC DCH+ATK+ISKI  REI+VRD  RFH FKD
Sbjct: 692 IPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKD 738



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 168/329 (51%), Gaps = 36/329 (10%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-----CE---- 59
           N+     +L   +  G ++LG  VHG V+KF F   + V + LV MY       C     
Sbjct: 141 NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAF 200

Query: 60  ---------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98
                                  IE  R++F +M E+DS+SW+AMI G+ + GL  +AID
Sbjct: 201 DEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAID 260

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           LFR+M++  +  D+ T  +VL+AC  + AL+ GK V ++I +     ++ + +AL+DM+ 
Sbjct: 261 LFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYC 320

Query: 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           KC  +  A  +FR MN + +VSWT+++ G   +G   EAV +F +M   G+ PDD     
Sbjct: 321 KCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGS 380

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           ++S+C++   +++G + F       G+I  I     +V +  + G ++++H    +M   
Sbjct: 381 VISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY- 438

Query: 279 ANPIIWRTLISACCARGE----LKLAESI 303
            + + W  L+S     G+    L+L ES+
Sbjct: 439 VDEVSWTALVSGYAQFGKANETLRLFESM 467



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ FT   V+ +CA +  L  G   H   L       I V N LV +YG C G
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKC-G 424

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   ++F EMS  D VSW+A++ GYA+ G + + + LF  M   G  PD++T + VLS
Sbjct: 425 SIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLS 484

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
           AC+  G ++ G  + ES I++  +         +ID+F++ G +++A K    M      
Sbjct: 485 ACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDA 544

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           + W S+++    H R +E      E L    P +  +++ L S
Sbjct: 545 IGWASLLSSCRFH-RNMEIGKWAAESLLKLEPHNTASYILLSS 586



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 128/323 (39%), Gaps = 68/323 (21%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--------------- 74
           K +H  ++K     +I + N LV  Y   +  I   R+VFD+M +               
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDR-ITYARRVFDQMPQRNLYSWNTLLSSYSK 87

Query: 75  ----------------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVT 117
                           RD VSW+++I  YA  G    ++  +  M  +G    + I + T
Sbjct: 88  LACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALST 147

Query: 118 VLSACTDLGALEVGKWVESFIEK-------------------------------QMVNRS 146
           +L   +  G + +G  V   + K                               +M  ++
Sbjct: 148 MLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKN 207

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V + N LI    +C  ++ + +LF  M  +  +SWT++IAG   +G   EA+ LF EM  
Sbjct: 208 VVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRL 267

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             +  D   F  +L+AC     + +G++     ++ D+     I     +VDM C+   +
Sbjct: 268 ENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ--DNIFVGSALVDMYCKCKSI 325

Query: 266 KEAHEFIQKMPIEANPIIWRTLI 288
           K A    +KM  + N + W  ++
Sbjct: 326 KSAETVFRKMNCK-NVVSWTAML 347


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 308/509 (60%), Gaps = 38/509 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML++ V+PN FT+P +++AC    +    K +H  VLKF FG D +  N L+H+Y +  G
Sbjct: 94  MLQHCVTPNAFTFPSLIRACKLEEE---AKQLHAHVLKFGFGGDTYALNNLIHVYFAF-G 149

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS--------------------------- 93
            ++  R+VF  MS+ + VSW++++ GY++ GL                            
Sbjct: 150 SLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFV 209

Query: 94  -----TDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
                 +A  LFR+M++      D     T+LSACT +GALE G W+  ++EK  +    
Sbjct: 210 KGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDS 269

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE- 206
            L   +IDM+ KCG +DKA  +F  +  + + SW  +I G AMHG+G +A+ LF+EM E 
Sbjct: 270 KLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEE 329

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           A V PD + FV +L+AC+H GLV++G  YF  M +  GI P  EHYGCMVD+L R+GR++
Sbjct: 330 AMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLE 389

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA + I +MP+  +  +   L+ AC   G L+L E +  R+I  +P +   YV+L ++YA
Sbjct: 390 EAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYA 449

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +WE+   +R++MD RG+KK PG ++IE++  + EFV G + H  ++ IY  + EM  
Sbjct: 450 SCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLE 509

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
            ++  G+VP T  VL D+ EE++E+ L  HSEKLAIA+ LLKT  G  +R+ KNLRVC D
Sbjct: 510 SIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKD 569

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH A+K ISK+Y+ +I++RDR RFHHF +
Sbjct: 570 CHQASKMISKVYDCDIIIRDRSRFHHFSN 598


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 293/474 (61%), Gaps = 31/474 (6%)

Query: 31  SVHGAVLKFQFGDDIHVQNTLVHMYGS------------------------------CEG 60
           S HGA +++    D HVQ+ ++ MY +                                G
Sbjct: 135 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 194

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R +FD M +RD V+WSAMI GY  +G S +A+ LF +M  +G    E T+V+VL+
Sbjct: 195 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 254

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G L+ GKWV  ++  + +  S+ L  AL+DM++KCG V  A+++F SM  R + +
Sbjct: 255 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 314

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS ++GLAM+G G E + LF+ M  AG+ P+ V+FV +L  CS  GLVD+GR  FDSM 
Sbjct: 315 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM- 373

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +G+ P  EHYGCMVD+  R+GR+ +A  FI  MP+E +  +W  L++A      + L 
Sbjct: 374 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 433

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +    +L+  E  +++ +V LS+IYA+   W+  +++R +M  +G+KK+PG + IE+D +
Sbjct: 434 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGK 493

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF  G + H +  EI  ML EM R+++  GY   T EVL DI EE+KE A++ HSEKL
Sbjct: 494 VHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKL 553

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF L+  P    IRIVKNLRVC DCH   K +SK++NREIV+RDR+RFHHFK
Sbjct: 554 ALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFK 607



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 1/173 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G +  + T   VL ACA IG L+ GK VH  V        I +   LV MY  C G
Sbjct: 237 MLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKC-G 295

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF+ M+ER+  +W++ + G A  G+ T+ + LF++M+ +G+ P+ ++ V VL 
Sbjct: 296 AVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLR 355

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            C+  G ++ G+     ++K  V+        ++D++ + G +D A+     M
Sbjct: 356 GCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDM 408


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 298/474 (62%), Gaps = 2/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+YG+ P+ FT PFVLKAC+ +  +  G+S+H  V+K  +  D+ V   L+ MY  C  
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ GR VFD++  RD+V W++M+  YA+ G   ++I L R+M  +GV P E T+VTV+S
Sbjct: 199 VMDAGR-VFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVIS 257

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +  D+  L  G+ +  F  +     +  +  ALIDM+AKCG V  AL LF  +  + +VS
Sbjct: 258 SSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVS 317

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G AMHG  + A+ LF++M +    PD + FVG+L+ACS   L+D+GR  ++ M 
Sbjct: 318 WNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMV 376

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+GI P ++HY CM+D+L   G++ EA++ I+ M ++ +  +W  L+++C   G ++LA
Sbjct: 377 RDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELA 436

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++LI  EP    NYV+L+++YA+  +WE   K+R+VM  + +KK    + IE+ N+
Sbjct: 437 ELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNK 496

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD SH  S  IY  L  +   M +AGY P T  V  D+ E++K   +  HSE+L
Sbjct: 497 VYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERL 556

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIAF L+ T PGT + I KNLR+C DCH A KFISKI  REI VRD +R+H FK
Sbjct: 557 AIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFK 610



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           + Y  +L++C     LN GK +H          +  +   LVH+Y      +   R +FD
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLN-ARNLFD 106

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           ++ +++   W+ +I GYA  G   +AI L+ +M   G+ PD  T+  VL AC+ L A+  
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G+ +  ++ K    R + +  ALIDM+AKCG V  A ++F  +  R  V W S++A  A 
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKI 249
           +G   E+++L  EM   GV P +   V ++S+ +    +  GRE      ++ F    K+
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +    ++DM  + G VK A    +++  E   + W  +I+     G
Sbjct: 287 K--TALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITGYAMHG 329


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/503 (40%), Positives = 301/503 (59%), Gaps = 29/503 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+K T   +L AC    +L   + VH          ++ V N LVH Y S   
Sbjct: 351 MLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFY-SYYR 409

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLG----------------------------L 92
            ++    +FD M  RDSVSWS M+GG+A++G                             
Sbjct: 410 ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGN 469

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           + +++ LF +M+  GV PD++ MVTV+ AC  LGA+   + ++ +I+++     V L  A
Sbjct: 470 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 529

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           +IDM AKCG V+ A ++F  M  + ++SW+++IA    HG+G +A+ LF  ML +G+ P+
Sbjct: 530 MIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPN 589

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            +  V LL ACSH GLV++G  +F  M  D+ +   ++HY C+VD+L R+GR+ EA + I
Sbjct: 590 KITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLI 649

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           + M +E +  +W   + AC    ++ LAE     L+  +P +  +Y+LLS+IYA   RWE
Sbjct: 650 ESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWE 709

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              K R++M +R +KKIPG T IE+DN+ ++F  GD +H +SKEIYEML  +G K++  G
Sbjct: 710 DVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVG 769

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP T+ VL D++EE K   L  HSEKLAIAF L+ TP  TPIRI+KNLRVC DCH+  K
Sbjct: 770 YVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCK 829

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
            +S I  R I+VRD +RFHHFK+
Sbjct: 830 LVSAITGRVIIVRDANRFHHFKE 852



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 22/234 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++  G  P+ +T PFV++AC  + +L                     Q  LV MY  C  
Sbjct: 170 LIRCGARPDNYTLPFVIRACRDLKNL---------------------QMALVDMYVKCRE 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD+M ERD V+W+ MIGGYA  G + +++ LF +M+  GV PD++ MVTV+ 
Sbjct: 209 -IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 267

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LGA+   + ++ +I+++     V L  A+IDM+AKCG V+ A ++F  M  + ++S
Sbjct: 268 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 327

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           W+++IA    HG+G +A+ LF  ML +G+ PD +    LL AC +C  + + R+
Sbjct: 328 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ 381



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV P+K     V+ ACA +G ++  + +   + + +F  D+ +   ++ MY  C G
Sbjct: 250 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC-G 308

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R++FD M E++ +SWSAMI  Y   G    A+DLFR M  SG+ PD+IT+ ++L 
Sbjct: 309 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 368

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +   L   + V +      + +++ + N L+  ++    +D A  LF  M  R  VS
Sbjct: 369 ACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVS 428

Query: 181 WTSVIAGLA----------------------------MHGRGLEAVALFEEMLEAGVPPD 212
           W+ ++ G A                              G   E++ LF++M E GV PD
Sbjct: 429 WSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPD 488

Query: 213 DVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            VA V ++ AC+  G + K R   +Y    K    +I        M+DM  + G V+ A 
Sbjct: 489 KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT----AMIDMHAKCGCVESAR 544

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
           E   +M  E N I W  +I+A    G+
Sbjct: 545 EIFDRME-EKNVISWSAMIAAYGYHGQ 570



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 158/329 (48%), Gaps = 32/329 (9%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F + A     +L   + VH         ++I V N L++ Y S    ++    +FD M  
Sbjct: 83  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY-SYYRALDDAYGLFDGMCV 141

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           RDSVSWS M+GG+A++G   +    FR++   G  PD  T+  V+ AC DL  L++    
Sbjct: 142 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---- 197

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
                            AL+DM+ KC +++ A  LF  M  R +V+WT +I G A  G+ 
Sbjct: 198 -----------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKA 240

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEH 251
            E++ LFE+M E GV PD VA V ++ AC+  G + K R   +Y    K    +I     
Sbjct: 241 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT-- 298

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
              M+DM  + G V+ A E   +M  E N I W  +I+A    G+ + A  +  R++ + 
Sbjct: 299 --AMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLF-RMMLSS 354

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREV 340
            M      L S +YA  +     T++R+V
Sbjct: 355 GMLPDKITLASLLYA-CINCRNLTQVRQV 382


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/432 (43%), Positives = 279/432 (64%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y  C G I   + +FD+M +RD VSW+AMI GY++ G S +A+ LF QM
Sbjct: 342 NVSTWNTMITGYAQC-GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  +  + LS C D+ ALE+GK +   + K        + NAL+ M+ KCG +
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++A  LF+ M G+ IVSW ++IAG + HG G  A+  FE M   G+ PDD   V +LSAC
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVDKGR+YF +M  D+G++P  +HY CMVD+L R+G +++AH  ++ MP E +  I
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAI 580

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W TL+ A    G  +LAE+   ++   EP +   YVLLS++YA   RW    K+R  M  
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           +G+KK+PG + IE+ N+ + F  GD+ H +  EI+  L+E+  +MKKAGYV  TS VL D
Sbjct: 641 KGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHD 700

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  +  HSE+LA+A+ +++   G PIR++KNLRVC DCH+A K++++I  R I+
Sbjct: 701 VEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLII 760

Query: 464 VRDRHRFHHFKD 475
           +RD +RFHHFKD
Sbjct: 761 LRDNNRFHHFKD 772



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 3/186 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ ++   L  CA +  L LGK +HG ++K  +     V N L+ MY  C G IE    +
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-GSIEEANDL 466

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F EM+ +D VSW+ MI GY+R G    A+  F  M+  G+ PD+ TMV VLSAC+  G +
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526

Query: 129 EVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIA 186
           + G+ +  +  +   V  +      ++D+  + G ++ A  L ++M      + W +++ 
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586

Query: 187 GLAMHG 192
              +HG
Sbjct: 587 ASRVHG 592



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 30/280 (10%)

Query: 40  QFGDDIHVQ-----NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
           QF D ++V+     NT++  Y    G I+  R++FDE   +D  +W+AM+ GY +  +  
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQ-SGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVE 298

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A +LF +M       +E++   +L+       +E+ K  E F    M  R+V   N +I
Sbjct: 299 EARELFDKMPER----NEVSWNAMLAGYVQGERMEMAK--ELF--DVMPCRNVSTWNTMI 350

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
             +A+CG + +A  LF  M  R  VSW ++IAG +  G   EA+ LF +M   G   +  
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAH 269
           +F   LS C+    ++ G++          ++      GC V      M C+ G ++EA+
Sbjct: 411 SFSSALSTCADVVALELGKQLHGR------LVKGGYETGCFVGNALLLMYCKCGSIEEAN 464

Query: 270 EFIQKMPIEANPIIWRTLISACCARG----ELKLAESITK 305
           +  ++M  + + + W T+I+     G     L+  ES+ +
Sbjct: 465 DLFKEMAGK-DIVSWNTMIAGYSRHGFGEVALRFFESMKR 503



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 64/290 (22%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G  EL RK+FDEM ERD VSW+ MI GY R      A +LF  M    VC    +  T+L
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC----SWNTML 164

Query: 120 SACTDLGALEVGK-------------W---VESFIE-----------KQMVNRSVGLCNA 152
           S     G ++  +             W   + ++++           K   N ++   N 
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+  F K   + +A + F SMN R +VSW ++I G A  G+  EA  LF+E      P  
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE-----SPVQ 279

Query: 213 DV-AFVGLLSACSHCGLVDKGREYFDSM------------------------KNDFGIIP 247
           DV  +  ++S      +V++ RE FD M                        K  F ++P
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339

Query: 248 --KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +  +  M+    + G++ EA     KMP + +P+ W  +I+     G
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 388



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 141/308 (45%), Gaps = 30/308 (9%)

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           + D   W+  I  Y R G   +A+ +F++M         ++   ++S     G  E+ + 
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELAR- 115

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
               +  +M  R +   N +I  + +  ++ KA +LF  M  R + SW ++++G A +G 
Sbjct: 116 ---KLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A ++F+ M E     +DV++  LLSA      +++    F S +N + ++     + 
Sbjct: 173 VDDARSVFDRMPE----KNDVSWNALLSAYVQNSKMEEACMLFKSREN-WALVS----WN 223

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           C++    +  ++ EA +F   M +  + + W T+I+     G++  A    ++L    P+
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEA----RQLFDESPV 278

Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
            +      + + +  ++     + RE+ D     K+P    +  +  +  +V G++    
Sbjct: 279 QD--VFTWTAMVSGYIQNRMVEEARELFD-----KMPERNEVSWNAMLAGYVQGER-MEM 330

Query: 374 SKEIYEML 381
           +KE+++++
Sbjct: 331 AKELFDVM 338


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/466 (42%), Positives = 299/466 (64%), Gaps = 3/466 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+FT+  VL +C       LG+ +H  ++K  + D + V ++L+ MY   +G I   R 
Sbjct: 363 PNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAK-DGKIHEART 421

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ + ERD VS +A+I GYA+LGL  +A++LFR++Q  G+  + +T   VL+A + L A
Sbjct: 422 VFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAA 481

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L++GK V + + +  +   V L N+LIDM++KCG++  + ++F +M  RT++SW +++ G
Sbjct: 482 LDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVG 541

Query: 188 LAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN-DFGI 245
            + HG G E + LF  M E   V PD V  + +LS CSH GL DKG   F+ M +    +
Sbjct: 542 YSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEV 601

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            PK+EHYGC+VD+L RSGRV+EA EFI+KMP E    IW +L+ AC     + + E   +
Sbjct: 602 EPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQ 661

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L+  EP +  NYV+LS++YA   RWE  + +R++M K+ + K PG + IELD  ++ F 
Sbjct: 662 QLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFH 721

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D+SH + +EI   + E+    K+ GYVP  S VL D++EE KE  L  HSEKLA++F 
Sbjct: 722 ASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFG 781

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           L+ +P   PIR++KNLR+C DCH+  K+ISK+Y RE+ +RD++RFH
Sbjct: 782 LIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFH 827



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 145/306 (47%), Gaps = 24/306 (7%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
            Y  +L  C        G+ VH  ++K ++   + ++  L+ +Y  C+  +     VFDE
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS-LGDAHNVFDE 303

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLF---RQMQISGVC------------------P 110
           M ER+ VSW+AMI  Y++ G ++ A++LF    ++ ++GV                   P
Sbjct: 304 MPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEP 363

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           +E T  TVL++CT      +G+ + S I K      V + ++L+DM+AK G + +A  +F
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             +  R +VS T++I+G A  G   EA+ LF  +   G+  + V + G+L+A S    +D
Sbjct: 424 ECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD 483

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G++  + +     I   +     ++DM  + G +  +      M  E   I W  ++  
Sbjct: 484 LGKQVHNHVLRS-EIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAMLVG 541

Query: 291 CCARGE 296
               GE
Sbjct: 542 YSKHGE 547



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 5/192 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  TY  VL A +G+  L+LGK VH  VL+ +    + +QN+L+ MY  C G +  
Sbjct: 461 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKC-GNLTY 519

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACT 123
            R++FD M ER  +SW+AM+ GY++ G   + + LF  M + + V PD +T++ VLS C+
Sbjct: 520 SRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS 579

Query: 124 DLGALEVGKWVESFIE--KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVS 180
             G  + G  + + +   K  V   +     ++D+  + G V++A +  + M    T   
Sbjct: 580 HGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAI 639

Query: 181 WTSVIAGLAMHG 192
           W S++    +H 
Sbjct: 640 WGSLLGACRVHS 651



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 129/305 (42%), Gaps = 31/305 (10%)

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
           QM + G          +L+ C +  A   G+ V + + K     SV L   LI ++ KC 
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE-------------EMLEAG 208
            +  A  +F  M  R +VSWT++I+  +  G   +A+ LF              + L+  
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLS 352

Query: 209 VP--------PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            P        P++  F  +L++C+       GR+   S+         +     ++DM  
Sbjct: 353 NPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQ-IHSLIIKLNYEDHVFVGSSLLDMYA 411

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320
           + G++ EA    + +P E + +    +IS     G  + A  + +RL G E M +SNYV 
Sbjct: 412 KDGKIHEARTVFECLP-ERDVVSCTAIISGYAQLGLDEEALELFRRLQG-EGM-KSNYVT 468

Query: 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV--CGDKSHHQSKEIY 378
            + +   L         ++V +     +IP  + + L N + +    CG+ ++  S+ I+
Sbjct: 469 YTGVLTALSGLAALDLGKQVHNHVLRSEIP--SFVVLQNSLIDMYSKCGNLTY--SRRIF 524

Query: 379 EMLDE 383
           + + E
Sbjct: 525 DTMYE 529


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/474 (41%), Positives = 293/474 (61%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V PN FT+  VL+ACA    L+LGK +H  VLKF    ++ V N ++ +Y  C G
Sbjct: 329 MRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKC-G 387

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   K+F+E+ +R+ V+W+ +I GY +LG    A++LF  M    + P E+T  +VL 
Sbjct: 388 EIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLR 447

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   L ALE G  + S   K M N+   + N+LIDM+AKCG ++ A   F  MN R  VS
Sbjct: 448 ASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVS 507

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G +MHG  +EA+ LF+ M      P+ + FVG+LSACS+ GL+ KG+ +F+SM 
Sbjct: 508 WNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMS 567

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P IEHY CMV +L R GR  EA + I ++  + + ++WR L+ AC    ++ L 
Sbjct: 568 KDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLG 627

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP  ++ +VLLS++YA   RW+    +R+ M K+ ++K PG + +E    
Sbjct: 628 RVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGV 687

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD SH   K I  ML+ + +K + AGYVP  + VLLD+ +++KE  L  HSE+L
Sbjct: 688 VHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERL 747

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+A+ L++TP    IRI+KNLR+C DCH+  K ISK+  REIV+RD +RFHHF+
Sbjct: 748 ALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFR 801



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 156/288 (54%), Gaps = 11/288 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT    LK+C G+   N+GKSVHG  LK  +  D+ V   L+ +Y    G I  
Sbjct: 232 GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAK-SGEIID 290

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +++F+EM + D + WS MI  YA+   S +A+DLF +M+ + V P+  T  +VL AC  
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             +L++GK + S + K  +N +V + NA++D++AKCG+++ ++KLF  +  R  V+W ++
Sbjct: 351 SVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTI 410

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----FDSMK 240
           I G    G G  A+ LF  MLE  + P +V +  +L A +    ++ G +       +M 
Sbjct: 411 IVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY 470

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           N   ++        ++DM  + GR+ +A     KM  + + + W  +I
Sbjct: 471 NKDTVVA-----NSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMI 512



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 3/284 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   N F +  +LK    +   +L  ++H  V K     D  V   L+  Y S  G +++
Sbjct: 131 GHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAY-SVRGNVDV 189

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD++  +D VSW+ M+  YA      +++ LF QM+I G  P+  T+   L +C  
Sbjct: 190 ARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLG 249

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A  VGK V     K   +  + +  AL++++AK G++  A +LF  M    ++ W+ +
Sbjct: 250 LEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLM 309

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IA  A   R  EA+ LF  M +  V P++  F  +L AC+    +D G++   S    FG
Sbjct: 310 IARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFG 368

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +   +     ++D+  + G ++ + +  +++P + N + W T+I
Sbjct: 369 LNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTII 411



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 122/271 (45%), Gaps = 23/271 (8%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           GK +H  +LK     D+  QN L++ Y      ++   K+FDEM + +++S+  +  GY+
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQ-SNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           R      A+    ++   G   +     T+L     +    +   + + + K   +    
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  ALID ++  G+VD A  +F  +  + +VSWT ++A  A +    E++ LF +M   G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC----------MVDM 258
             P++    G L +C        G E F+  K+  G   K    GC          ++++
Sbjct: 233 YKPNNFTISGALKSC-------LGLEAFNVGKSVHGCALK----GCYDHDLFVGIALLEL 281

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             +SG + +A    ++MP + + I W  +I+
Sbjct: 282 YAKSGEIIDAQRLFEEMP-KTDLIPWSLMIA 311


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/432 (43%), Positives = 278/432 (64%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y  C G I   + +FD+M +RD VSW+AMI GY++ G S +A+ LF  M
Sbjct: 337 NVSTWNTMITGYAQC-GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  +  + LS C D+ ALE+GK +   + K        + NAL+ M+ KCG +
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++A  LF+ M G+ IVSW ++IAG + HG G EA+  FE M   G+ PDD   V +LSAC
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVDKGR+YF +M  D+G+ P  +HY CMVD+L R+G ++EAH  ++ MP E +  I
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAI 575

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W TL+ A    G  +LAE+   ++   EP +   YVLLS++YA   RW    K+R  M  
Sbjct: 576 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 635

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           +G+KK+PG + IE+ N+ + F  GD+ H +  EI+  L+++  +MKKAGYV  TS VL D
Sbjct: 636 KGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHD 695

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  +  HSE+LA+A+ +++   G PIR++KNLRVC DCH+A K+++K+  R I+
Sbjct: 696 VEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLII 755

Query: 464 VRDRHRFHHFKD 475
           +RD +RFHHFKD
Sbjct: 756 LRDNNRFHHFKD 767



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 3/186 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ ++   L  CA +  L LGK +HG ++K  +     V N L+ MY  C G IE    +
Sbjct: 403 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-GSIEEANDL 461

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F EM+ +D VSW+ MI GY+R G   +A+  F  M+  G+ PD+ TMV VLSAC+  G +
Sbjct: 462 FKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLV 521

Query: 129 EVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIA 186
           + G+ +  +  +   V  +      ++D+  + G +++A  L ++M      + W +++ 
Sbjct: 522 DKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLG 581

Query: 187 GLAMHG 192
              +HG
Sbjct: 582 ASRVHG 587



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 30/280 (10%)

Query: 40  QFGDDIHVQ-----NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
           QF D + V+     NT++  Y    G I+  R++FDE    D  +W+AM+ GY +  +  
Sbjct: 235 QFFDSMKVRDVVSWNTIITGYAQ-NGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVE 293

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A +LF +M       +E++   +L+       +E+ K  E F    M  R+V   N +I
Sbjct: 294 EARELFDRMPER----NEVSWNAMLAGYVQGERVEMAK--ELF--DVMPCRNVSTWNTMI 345

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
             +A+CG + +A  LF  M  R  VSW ++IAG +  G   EA+ LF  M   G   +  
Sbjct: 346 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRS 405

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAH 269
           +F   LS C+    ++ G++          ++      GC V      M C+ G ++EA+
Sbjct: 406 SFSSALSTCADVVALELGKQLHGR------LVKGGYETGCFVGNALLLMYCKCGSIEEAN 459

Query: 270 EFIQKMPIEANPIIWRTLISACCARG----ELKLAESITK 305
           +  ++M  + + + W T+I+     G     L+  ES+ +
Sbjct: 460 DLFKEMAGK-DIVSWNTMIAGYSRHGFGEEALRFFESMKR 498



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 43/282 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G  EL R +FDEM ERD VSW+ MI GY R      A +LF +M    VC    +  T+L
Sbjct: 104 GEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC----SWNTIL 159

Query: 120 SACTDLGALEVGK-------------W---VESFIEKQMV-----------NRSVGLCNA 152
           S     G ++  +             W   + ++++   +           N ++   N 
Sbjct: 160 SGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNC 219

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+  F K   + +A + F SM  R +VSW ++I G A +G   EA  LF+E      P  
Sbjct: 220 LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE-----SPVH 274

Query: 213 DV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           DV  +  ++S      +V++ RE FD M     +      +  M+    +  RV+ A E 
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV-----SWNAMLAGYVQGERVEMAKEL 329

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
              MP   N   W T+I+     G++  A+++  ++   +P+
Sbjct: 330 FDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV 370



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           + D   W+  I  Y R G  ++A+ +F++M         ++   ++S     G  E+ + 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRW----SSVSYNAMISGYLRNGEFELAR- 110

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
               +  +M  R +   N +I  + +  ++ KA +LF  M  R + SW ++++G A +G 
Sbjct: 111 ---MLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGC 167

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +A  +F+ M E     +DV++  LLSA      +++    F S +N + ++     + 
Sbjct: 168 VDDARRVFDRMPE----KNDVSWNALLSAYVQNSKLEEACVLFGSREN-WALVS----WN 218

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           C++    +  ++ EA +F   M +  + + W T+I+     GE+  A    ++L    P+
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTIITGYAQNGEIDEA----RQLFDESPV 273

Query: 314 HE 315
           H+
Sbjct: 274 HD 275


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 295/475 (62%), Gaps = 2/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   GVSP+ ++   VL ACA    L+ G+ VH  + K      + V N L+ MY  C G
Sbjct: 746  MESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKC-G 804

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E    VF ++  +D VSW+ MIGGY++  L  +A+ LF +MQ     PD ITM  +L 
Sbjct: 805  SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-PDGITMACLLP 863

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC  L ALE+G+ +   I +   +  + + NALIDM+ KCG +  A  LF  +  + +++
Sbjct: 864  ACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLIT 923

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WT +I+G  MHG G EA+A F++M  AG+ PD++ F  +L ACSH GL+++G  +F+SM 
Sbjct: 924  WTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMI 983

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++  + PK+EHY CMVD+L R+G + +A+  I+ MPI+ +  IW  L+  C    +++LA
Sbjct: 984  SECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELA 1043

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E + + +   EP +   YVLL++IYA+  +WE+  K+RE + KRG+KK PG + IE+  +
Sbjct: 1044 EKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGK 1103

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
               FV  D +H Q+K I+ +L+ +  KMK  G+ P     L++  + +KE AL  HSEKL
Sbjct: 1104 FTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKL 1163

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            A+AF +L  P G  IR+ KNLRVC+DCH   KF+SK   REI++RD +RFHHFKD
Sbjct: 1164 AMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKD 1218



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G++ N +T+  +LK  A +G +   K +HG V K  FG    V N+L+  Y    G
Sbjct: 544 MQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFK-SG 602

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K+FDE+ +RD VSW++MI G    G S  A++ F QM I  V  D  T+V  ++
Sbjct: 603 EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC ++G+L +G+ +     K   +R V   N L+DM++KCG+++ A++ F  M  +T+VS
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           WTS+IA     G   +A+ LF EM   GV PD  +   +L AC+    +DKGR+  + + 
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           KN+  +   + +   ++DM  + G ++EA+    ++P++ + + W T+I
Sbjct: 783 KNNMALCLPVSN--ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMI 828



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 151/279 (54%), Gaps = 4/279 (1%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           + ACA +G L+LG+++HG  +K  F  ++   NTL+ MY  C G +    + F++M ++ 
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKC-GNLNDAIQAFEKMGQKT 719

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
            VSW+++I  Y R GL  DAI LF +M+  GV PD  +M +VL AC    +L+ G+ V +
Sbjct: 720 VVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           +I K  +   + + NAL+DM+AKCG +++A  +F  +  + IVSW ++I G + +    E
Sbjct: 780 YIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNE 839

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A+ LF EM +    PD +    LL AC     ++ GR     +  + G   ++     ++
Sbjct: 840 ALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALI 897

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           DM  + G +  A      +P E + I W  +IS C   G
Sbjct: 898 DMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMHG 935



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 6/281 (2%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
            Y  +L+ CA    L  GK VH  +       +  +   LV MY SC G +  GR++FD 
Sbjct: 453 AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSC-GALREGRRIFDH 511

Query: 72  -MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            +S+     W+ M+  YA++G   ++I LF++MQ  G+  +  T   +L     LG +  
Sbjct: 512 ILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGE 571

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
            K +   + K        + N+LI  + K G+VD A KLF  +  R +VSW S+I+G  M
Sbjct: 572 CKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVM 631

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKI 249
           +G    A+  F +ML   V  D    V  ++AC++ G +  GR  +   +K  F    ++
Sbjct: 632 NGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS--REV 689

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                ++DM  + G + +A +  +KM  +   + W +LI+A
Sbjct: 690 MFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVVSWTSLIAA 729


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 300/475 (63%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+      +L+A   + DL  G+S+HG V+K    D+  +  +L   Y  C G
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKC-G 304

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + +  FD+M   + + W+AMI GYA+ G + +A++LF  M    + PD +T+ + + 
Sbjct: 305 LVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVL 364

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +G+LE+ +W++ ++ K      + +  +LIDM+AKCG V+ A ++F   + + +V 
Sbjct: 365 ASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVM 424

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G  +HG+G EA+ L+  M +AGV P+DV F+GLL+AC+H GLV +G E F  MK
Sbjct: 425 WSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK 484

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DF I+P+ EHY C+VD+L R+G + EA  FI K+PIE    +W  L+SAC     + L 
Sbjct: 485 -DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLG 543

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L   +P +  +YV LS++YA    W+    +R +M ++G+ K  G ++IE++ +
Sbjct: 544 EYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGK 603

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +  F  GDKSH  +KEI++ L  + R++K+ G+VP T  VL D+N E+KE+ L+ HSE++
Sbjct: 604 LQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERI 663

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L+ T PGT +RI KNLR C +CHSA K ISK+  REI+VRD +RFHHFKD
Sbjct: 664 AVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKD 718



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 5/293 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ FT+P+VLKAC  + D  L   +HG ++K+ FG D+ VQN LV +Y  C G I +
Sbjct: 149 GVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKC-GHIGV 207

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + VFD +  R  VSW+++I GYA+ G + +A+ +F QM+ +GV PD I +V++L A TD
Sbjct: 208 AKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTD 267

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  LE G+ +  F+ K  +     L  +L   +AKCG V  A   F  M    ++ W ++
Sbjct: 268 VDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAM 327

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           I+G A +G   EAV LF  M+   + PD V     + A +  G ++  +   D + K+++
Sbjct: 328 ISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNY 387

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           G    I     ++DM  + G V+ A     +   + + ++W  +I      G+
Sbjct: 388 G--SDIFVNTSLIDMYAKCGSVEFARRVFDRNS-DKDVVMWSAMIMGYGLHGQ 437



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 43/280 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I   RK+FDE    D   W+A+I  Y+R  +  D ++++R M+ +GV PD  T   VL
Sbjct: 102 GQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVL 161

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            ACT+L    +   +   I K      V + N L+ ++AKCG +  A  +F  +  RTIV
Sbjct: 162 KACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIV 221

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------------- 224
           SWTS+I+G A +G+ +EA+ +F +M   GV PD +A V +L A +               
Sbjct: 222 SWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV 281

Query: 225 --------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
                                CGLV   + +FD MK    I+     +  M+    ++G 
Sbjct: 282 IKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIM-----WNAMISGYAKNGH 336

Query: 265 VKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAE 301
            +EA      M    I+ + +  R+ + A    G L+LA+
Sbjct: 337 AEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQ 376


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/421 (45%), Positives = 276/421 (65%), Gaps = 1/421 (0%)

Query: 55  YGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           Y S E  ++    +F+ M++++ +SW+ MI  Y    +  +A+ LF QM+  G+ PD +T
Sbjct: 250 YTSLEN-VQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVT 308

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           + ++L AC DL AL +G+ +  +IEK  +  ++ L NAL+DM+AKCG +++A  +F  M 
Sbjct: 309 IASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMR 368

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSWTS+++     G+G +AVALF +ML++G  PD +AFV +LSACSH GL+D+GR 
Sbjct: 369 LRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRH 428

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YF  M   +GI+P+IEH+ CMVD+  R+G V+EA+ FI++MP+E N  +W  L+SAC   
Sbjct: 429 YFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVH 488

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
            ++ +       L    P     YVLLS+IYAK   W+    +R  M K G+KK+PG + 
Sbjct: 489 SKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISN 548

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +EL+ +++ F+ GD+ H Q+K IY  LD +  KMK+ GY+P T   L D+  EDKE  L 
Sbjct: 549 VELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLA 608

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLAI FA+L T  GTPIRI KNLRVC DCH A K ISKI +R I+VRD +RFHHF 
Sbjct: 609 IHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFS 668

Query: 475 D 475
           +
Sbjct: 669 N 669



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 36/296 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML    +P+ +T+P VLKAC+G+ +L +G  VH A++K     ++ + N LV MYG C G
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKC-G 186

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKV D+M  RD VSW++M+ GYA+ G   DA+++ ++M    +  D  TM + LS
Sbjct: 187 CLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS-LS 245

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                 +LE  +++ +                                +F  M  + ++S
Sbjct: 246 PVVCYTSLENVQYIHN--------------------------------MFERMTKKNLIS 273

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IA    +    EAV+LF +M E G+ PD V    LL AC     +  GR     ++
Sbjct: 274 WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
               + P +     ++DM  + G ++EA +   KM +  + + W +++SA    G+
Sbjct: 334 KG-NLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSAYGRSGQ 387



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 80/148 (54%)

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           S +G   + R +FD   E++ V ++ MI  Y    L  +A+ +F+ M      PD  T  
Sbjct: 82  SAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFP 141

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VL AC+ L  L VG  V   I K  ++ ++ + NAL+ M+ KCG + +A K+   M  R
Sbjct: 142 CVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYR 201

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            +VSW S++AG A  G+  +A+ + +EM
Sbjct: 202 DVVSWNSMVAGYAQSGQFDDALEICKEM 229



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+  ++  G+   A  +F     + +V +  +I     +   +EA+++F+ ML     PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
              F  +L ACS    +  G +  D++    G+   +     +V M  + G ++EA + +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNLFIGNALVAMYGKCGCLREARKVL 195

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +MP   + + W ++++     G+   A  I K +
Sbjct: 196 DQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEM 229


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 293/474 (61%), Gaps = 31/474 (6%)

Query: 31   SVHGAVLKFQFGDDIHVQNTLVHMYGS------------------------------CEG 60
            S HGA +++    D HVQ+ ++ MY +                                G
Sbjct: 1340 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 1399

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             ++  R +FD M +RD V+WSAMI GY  +G S +A+ LF +M  +G    E T+V+VL+
Sbjct: 1400 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 1459

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC  +G L+ GKWV  ++  + +  S+ L  AL+DM++KCG V  A+++F SM  R + +
Sbjct: 1460 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 1519

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WTS ++GLAM+G G E + LF+ M  AG+ P+ V+FV +L  CS  GLVD+GR  FDSM 
Sbjct: 1520 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM- 1578

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + +G+ P  EHYGCMVD+  R+GR+ +A  FI  MP+E +  +W  L++A      + L 
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 1638

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            +    +L+  E  +++ +V LS+IYA+   W+  +++R +M  +G+KK+PG + IE+D +
Sbjct: 1639 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGK 1698

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++EF  G + H +  EI  ML EM R+++  GY   T EVL DI EE+KE A++ HSEKL
Sbjct: 1699 VHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKL 1758

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            A+AF L+  P    IRIVKNLRVC DCH   K +SK++NREIV+RDR+RFHHFK
Sbjct: 1759 ALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFK 1812



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 1/173 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML  G +  + T   VL ACA IG L+ GK VH  V        I +   LV MY  C G
Sbjct: 1442 MLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKC-G 1500

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    +VF+ M+ER+  +W++ + G A  G+ T+ + LF++M+ +G+ P+ ++ V VL 
Sbjct: 1501 AVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLR 1560

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
             C+  G ++ G+     ++K  V+        ++D++ + G +D A+     M
Sbjct: 1561 GCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDM 1613


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 296/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++    P+  T+  +L   + + D+N G+ +H  V+KF F  ++ + N+L+ +Y  C G
Sbjct: 413 MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKC-G 471

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   KVF  MS  D +SW+ +I         T    +  +M+  G+ PDE T++ +L 
Sbjct: 472 EMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILP 531

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ L     GK +  +I K     +V + NALI+M++KCG ++  +K+F+ M  + +V+
Sbjct: 532 MCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVT 591

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+   M+G G +A+  F++M  +GV PD VAF+  + ACSH G+V +G  +FD MK
Sbjct: 592 WTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMK 651

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ + P++EHY C+VD+L RSG + +A EFI  MP++ +  +W  L+SAC ARG   +A
Sbjct: 652 TDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIA 711

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + ++K+++         YVL+S+IYA L +W++   +R  M  +G+KK PGS+ IE+   
Sbjct: 712 QRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKR 771

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F  GDKS  Q  ++ ++L+ + R M K GYV      L D+ E+DK D L  HSE+L
Sbjct: 772 VYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERL 831

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PG+P+ ++KNLRVC DCH+ TK+I+KI  REI+VRD +RFH FKD
Sbjct: 832 AIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKD 886



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 167/330 (50%), Gaps = 8/330 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  + P+ FT+P V+ +CA I DL LG  VH   ++  F  D+++ N L+ MY     
Sbjct: 112 MREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VF+EMS RDSVSW+++I GY   G   DA+D++ + +++G+ PD  TM +VL 
Sbjct: 172 -LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLL 230

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L A++ G  V   IEK  +   V + N L+ M+ K   + +A ++F  M  +  V+
Sbjct: 231 ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVT 290

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G A  GR   +V LF +M++ G  PD ++    + AC   G +  G+     + 
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYL- 348

Query: 241 NDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
              G   + +   C  ++DM  + G +  A E       + + + W +LI+     G  K
Sbjct: 349 --IGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYK 405

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKL 328
                 K +          +VLL  I+++L
Sbjct: 406 EGLESFKMMKMERKPDSVTFVLLLSIFSQL 435



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 163/314 (51%), Gaps = 14/314 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   VL AC  +  +  G +VHG + K     D+ + N L+ MY   E  +  
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFER-LRE 275

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VF +M+ +DSV+W+ MI GYA+LG    ++ LF  M I G  PD +++ + + AC  
Sbjct: 276 ARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQ 334

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G L+VGK+V  ++           CN LIDM+AKCGD+  A ++F +   +  V+W S+
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSL 394

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I G    G   E +  F+ M++    PD V FV LLS  S    +++GR  + D +K  F
Sbjct: 395 INGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK--F 451

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISAC-----CARGEL 297
           G   ++     ++D+  + G + +  +    M   A+ II W T+I++      C  G  
Sbjct: 452 GFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM--SAHDIISWNTVIASSVHFDDCTVGFQ 509

Query: 298 KLAESITKRLIGNE 311
            + E  T+ L+ +E
Sbjct: 510 MINEMRTEGLMPDE 523



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
            +F    +LK  +   +    ++VH  ++       +     L+  Y   +  I     V
Sbjct: 18  QEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPIS-SVSV 76

Query: 69  FDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           F  +S  ++V  W+++I      GL T A+  + +M+   + PD  T  +V+++C  +  
Sbjct: 77  FRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILD 136

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE+G  V     +      + + NALIDM+++  D+D A  +F  M+ R  VSW S+I+G
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              +G   +A+ ++ +    G+ PD      +L AC     V +G      ++   GI  
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK-IGIAG 255

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            +     ++ M  +  R++EA     KM ++ + + W T+I   C   +L   E+  K
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVK-DSVTWNTMI---CGYAQLGRHEASVK 309


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 295/467 (63%), Gaps = 1/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +++T P VL + A +  +    SVH  ++K  F     V N L+ MY   +G ++    V
Sbjct: 40  DEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAK-QGKLDCAIMV 98

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F +M ++D VSW++++ GY+  G   +AI LF +M+ISGV PD+I + +VLSAC +L  +
Sbjct: 99  FSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVM 158

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           + G+ + + + K  +  S+ + N+L+ M+AKCG +  A + F +M  R ++SWT++I G 
Sbjct: 159 DFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGY 218

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A +GRG  ++  +++M+  G  PD + F+GLL ACSH GL+  GR YF++M   +GI P 
Sbjct: 219 AQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPG 278

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EHY CM+D+L RSG++ EA   + +M +  + ++W+ L++AC    EL+L E   K L 
Sbjct: 279 PEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLF 338

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EPM+   YV+LS++Y+   +WE   +IR +M  RG+ K PG + IE ++++  F+  D
Sbjct: 339 ELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSED 398

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           ++H    EIY  +DE+   +K+AGYVP  S  L D ++E KE  L  HSEKLA+AF LL 
Sbjct: 399 RNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLT 458

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            P G PIRI KNLRVC DCH+A K+ SK+Y R I++RD + FHHF +
Sbjct: 459 VPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTE 505



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 4/243 (1%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M   D VSW+++I G  R G   DA+  F++M+   +  DE T+ +VL++   +  ++  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             V   I K        + NALIDM+AK G +D A+ +F  M  + +VSWTS++ G + +
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G   EA+ LF +M  +GV PD +A   +LSAC+   ++D G++   ++    G+   +  
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSV 179

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--G 309
              +V M  + G + +A+     MP   + I W  LI      G  K +     ++I  G
Sbjct: 180 DNSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGRGKHSLQFYDQMIATG 238

Query: 310 NEP 312
            +P
Sbjct: 239 TKP 241



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P++     VL ACA +  ++ G+ +H  ++K      + V N+LV MY  C G I  
Sbjct: 137 GVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKC-GSIVD 195

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + FD M  RD +SW+A+I GYA+ G    ++  + QM  +G  PD IT + +L AC+ 
Sbjct: 196 ANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSH 255

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWT 182
            G L  G+ + E+  +   +         +ID+  + G + +A  L   M      V W 
Sbjct: 256 NGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWK 315

Query: 183 SVIAGLAMH 191
           +++A   +H
Sbjct: 316 ALLAACRVH 324


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 293/471 (62%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G++ +++T+  +L AC  +  L  GK +H  +++  + D++ V + LV MY  C   I+ 
Sbjct: 267 GIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRS-IKP 325

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F  MS ++ +SW+A+I GY + G S +A+ +F +MQ  G+ PD+ T+ +V+S+C +
Sbjct: 326 AETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCAN 385

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G           +   + + NAL+ ++ KCG ++ A +LF  M     VSWT++
Sbjct: 386 LASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTAL 445

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + G A  GR  E + LFE+ML   V PD V F+G+LSACS  G V+KG  YF SM+ D G
Sbjct: 446 VTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHG 505

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P  +HY CM+D+  RSGR+KEA EFI++MP+  + I W TL+SAC  RG++++ +   
Sbjct: 506 IVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAA 565

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L+  +P + ++YVLL  ++A    W +  ++R  M  R +KK PG + I+  N+++ F
Sbjct: 566 ENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIF 625

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D+SH  SK IYE L+ +  KM + GY P  S VL D+ + DK   ++ HSEKLAIAF
Sbjct: 626 SADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAF 685

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+  P   PIRIVKNLRVC DCH+ATK ISKI  R+I+VRD  RFH F +
Sbjct: 686 GLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSN 736



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 172/337 (51%), Gaps = 34/337 (10%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-------- 57
           V P++ T   ++ A + +GD  LG+  H  +L+  FG +  V + LV MY          
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 58  -----------------------CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                  C+  +E  R++F+ M++RD ++W+ M+ G+ + GL +
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKM-VEEARRLFEVMTDRDCITWTTMVTGFTQNGLES 254

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
            A++ FR+M+  G+  D+ T  ++L+AC  L ALE GK + ++I +   + +V + +AL+
Sbjct: 255 QALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALV 314

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM++KC  +  A   FR M+ + I+SWT++I G   +G   EAV +F EM   G+ PDD 
Sbjct: 315 DMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDF 374

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
               ++S+C++   +++G + F  +    G++  I     +V +  + G +++AH    +
Sbjct: 375 TLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           M    + + W  L++     G  K    + ++++  +
Sbjct: 434 MLFH-DQVSWTALVTGYAQFGRAKETIDLFEKMLAKD 469



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-- 208
           NAL+   A    +D    LF SM  R  VS+ +VIAG +  G    AV L+  +L AG  
Sbjct: 76  NALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSS 135

Query: 209 VPPDDVAFVGLLSACS-----------HC------------------------GLVDKGR 233
           V P  +    ++ A S           HC                        GL+   +
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
             FD M         +  Y  M+  L R   V+EA    + M  + + I W T+++    
Sbjct: 196 RVFDEMDGK-----NVVMYNTMITGLLRCKMVEEARRLFEVM-TDRDCITWTTMVTGFTQ 249

Query: 294 RGELKLAESITKRL 307
            G    A +  +R+
Sbjct: 250 NGLESQALNFFRRM 263


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 301/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G+ P++FT   +L ACA +  L  GK +HG +L+     D  +  +L+ +Y  C  
Sbjct: 493 MMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSS 552

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + LG+ +FD+M  +  V W+ MI G+++  L  +A+D FRQM   G+ P EI +  VL 
Sbjct: 553 ML-LGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG 611

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ + AL +GK V SF  K  ++    +  ALIDM+AKCG ++++  +F  +N +    
Sbjct: 612 ACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IAG  +HG GL+A+ LFE M   G  PD   F+G+L AC+H GLV +G +Y   M+
Sbjct: 672 WNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQ 731

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +G+ PK+EHY C+VDML R+G++ EA + + +MP E +  IW +L+S+C   G+L++ 
Sbjct: 732 NLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIG 791

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E ++K+L+  EP    NYVLLS++YA L +W++  K+R+ M + G+ K  G + IE+   
Sbjct: 792 EEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGM 851

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+  D S  +SK+I +   ++ +K+ K GY P TS VL ++ EE K   L  HSEKL
Sbjct: 852 VYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKL 911

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL T  GT +R+ KNLR+C DCH+A K +SK+  R+I+VRD  RFHHFK+
Sbjct: 912 AISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKN 966



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P+ FT P V KACAG+ D+ LG++VH   LK     D  V N L+ MYG C G +E  
Sbjct: 191 LAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKC-GFVESA 249

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GVCPDEITMVTVLSAC 122
            KVF+ M  R+ VSW++++   +  G   +   +F+++ IS   G+ PD  TMVTV+ AC
Sbjct: 250 VKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPAC 309

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +G + +G  V     K  +   V + N+L+DM++KCG + +A  LF    G+ +VSW 
Sbjct: 310 AAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWN 369

Query: 183 SVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACS 224
           ++I G +  G       L +EM  E  V  ++V  + +L ACS
Sbjct: 370 TIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 8/288 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAV-LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+AC    ++++G+ VH  V    +  +D+ +   ++ MY +C G     R VFD   E
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSAC-GSPSDSRGVFDAAKE 156

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQ-MQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           +D   ++A++ GY+R  L  DAI LF + +  + + PD  T+  V  AC  +  +E+G+ 
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           V +   K        + NALI M+ KCG V+ A+K+F +M  R +VSW SV+   + +G 
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 194 GLEAVALFEEML---EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
             E   +F+ +L   E G+ PD    V ++ AC+  G V  G      +    GI  ++ 
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFKLGITEEVT 335

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
               +VDM  + G + EA      M    N + W T+I      G+ +
Sbjct: 336 VNNSLVDMYSKCGYLGEARALFD-MNGGKNVVSWNTIIWGYSKEGDFR 382



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 2/233 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+  T   V+ ACA +G++ +G  VHG   K    +++ V N+LV MY  C G +
Sbjct: 292 EEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKC-GYL 350

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSA 121
              R +FD    ++ VSW+ +I GY++ G      +L ++MQ    V  +E+T++ VL A
Sbjct: 351 GEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C+    L   K +  +  +    +   + NA +  +AKC  +D A ++F  M G+T+ SW
Sbjct: 411 CSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSW 470

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            ++I   A +G   +++ LF  M+++G+ PD      LL AC+    +  G+E
Sbjct: 471 NALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKE 523



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  V  N+ T   VL AC+G   L   K +HG   +  F  D  V N  V  Y  C   +
Sbjct: 394 EEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSS-L 452

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   +VF  M  +   SW+A+IG +A+ G    ++DLF  M  SG+ PD  T+ ++L AC
Sbjct: 453 DCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             L  L  GK +  F+ +  +     +  +L+ ++ +C  +     +F  M  +++V W 
Sbjct: 513 ARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWN 572

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            +I G + +    EA+  F +ML  G+ P ++A  G+L ACS    +  G+E      + 
Sbjct: 573 VMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEV-----HS 627

Query: 243 FGIIPKIEHYG----CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           F +   +         ++DM  + G ++++     ++  E +  +W  +I+ 
Sbjct: 628 FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAG 678


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/421 (45%), Positives = 276/421 (65%), Gaps = 1/421 (0%)

Query: 55  YGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           Y S E  ++    +F+ M++++ +SW+ MI  Y    +  +A+ LF QM+  G+ PD +T
Sbjct: 250 YTSLEN-VQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVT 308

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           + ++L AC DL AL +G+ +  +IEK  +  ++ L NAL+DM+AKCG +++A  +F  M 
Sbjct: 309 IASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMR 368

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSWTS+++     G+G +AVALF +ML++G  PD +AFV +LSACSH GL+D+GR 
Sbjct: 369 LRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRH 428

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YF  M   +GI+P+IEH+ CMVD+  R+G V+EA+ FI++MP+E N  +W  L+SAC   
Sbjct: 429 YFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVH 488

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
            ++ +       L    P     YVLLS+IYAK   W+    +R  M K G+KK+PG + 
Sbjct: 489 SKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISN 548

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +EL+ +++ F+ GD+ H Q+K IY  LD +  KMK+ GY+P T   L D+  EDKE  L 
Sbjct: 549 VELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLA 608

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLAI FA+L T  GTPIRI KNLRVC DCH A K ISKI +R I+VRD +RFHHF 
Sbjct: 609 IHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFS 668

Query: 475 D 475
           +
Sbjct: 669 N 669



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 36/296 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML    +P+ +T+P VLKAC+G+ +L +G  VH A++K     ++ + N LV MYG C G
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKC-G 186

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKV D+M  RD VSW++M+ GYA+ G   DA+++ ++M    +  D  TM + LS
Sbjct: 187 CLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS-LS 245

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                 +LE  +++ +                                +F  M  + ++S
Sbjct: 246 PVVCYTSLENVQYIHN--------------------------------MFERMTKKNLIS 273

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IA    +    EAV+LF +M E G+ PD V    LL AC     +  GR     ++
Sbjct: 274 WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIE 333

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
               + P +     ++DM  + G ++EA +   KM +  + + W +++SA    G+
Sbjct: 334 KG-NLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSAYGRSGQ 387



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 80/148 (54%)

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           S +G   + R +FD   E++ V ++ MI  Y    L  +A+ +F+ M      PD  T  
Sbjct: 82  SAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFP 141

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VL AC+ L  L VG  V   I K  ++ ++ + NAL+ M+ KCG + +A K+   M  R
Sbjct: 142 CVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYR 201

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            +VSW S++AG A  G+  +A+ + +EM
Sbjct: 202 DVVSWNSMVAGYAQSGQFDDALEICKEM 229



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+  ++  G+   A  +F     + +V +  +I     +   +EA+++F+ ML     PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
              F  +L ACS    +  G +  D++    G+   +     +V M  + G ++EA + +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNLFIGNALVAMYGKCGCLREARKVL 195

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +MP   + + W ++++     G+   A  I K +
Sbjct: 196 DQMPYR-DVVSWNSMVAGYAQSGQFDDALEICKEM 229


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 293/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+ FT   +L AC+ +  L+ G+ +HG  L+     D  +  +L+ +Y  C G
Sbjct: 399 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICC-G 457

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                + +FD M  R  VSW+ MI GY++ GL  +AI+LFRQM   G+ P EI ++ V  
Sbjct: 458 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG 517

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL +GK +  F  K  +   + + +++IDM+AK G +  + ++F  +  + + S
Sbjct: 518 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 577

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IAG  +HGRG EA+ LFE+ML  G+ PDD  F G+L ACSH GLV+ G EYF+ M 
Sbjct: 578 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 637

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N   I PK+EHY C+VDML R+GR+ +A   I++MP + +  IW +L+S+C   G L L 
Sbjct: 638 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLG 697

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +  +L+  EP    NYVL+S+++A   +W+   ++R  M   G++K  G + IE+  +
Sbjct: 698 EKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 757

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GD+   + +E+ E    +  K+   GY P T  VL D+ EEDK   L  HSEKL
Sbjct: 758 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKL 817

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL T  G P+R+ KNLR+C DCH+A KFISK+ NR+IVVRD  RFHHF+D
Sbjct: 818 AISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRD 872



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT P V+KACAG+ DL LG+ +HG   K     D+ V N L+ MYG C G +E   K
Sbjct: 99  PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKC-GLVEEAVK 157

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSACTDL 125
           VF+ M ER+ VSW+++I G++  G   ++ + FR+M +      PD  T+VTVL  C   
Sbjct: 158 VFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGE 217

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +E G  V     K  +N  + + N+LIDM++KC  + +A  LF   + + IVSW S+I
Sbjct: 218 EDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMI 277

Query: 186 AGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSAC 223
            G A          L ++M   +A +  D+   + +L  C
Sbjct: 278 GGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 7/279 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAV-LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+AC    D+ +G+ +H  V    QF +D  +   ++ MY  C G     R VFD++  
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMC-GSPSDSRMVFDKLRR 62

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKW 133
           ++   W+A++  Y R  L  DA+ +F ++  ++   PD  T+  V+ AC  L  L +G+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +     K  +   V + NALI M+ KCG V++A+K+F  M  R +VSW S+I G + +G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 194 GLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
             E+   F EML  E    PD    V +L  C+    ++KG      +    G+  ++  
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKLGLNEELMV 241

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              ++DM  +   + EA     K   + N + W ++I  
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKND-KKNIVSWNSMIGG 279



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 4/250 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E    P+  T   VL  CAG  D+  G +VHG  +K    +++ V N+L+ MY  C    
Sbjct: 197 EESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLS 256

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTVLS 120
           E  + +FD+  +++ VSW++MIGGYAR         L ++MQ   + +  DE T++ VL 
Sbjct: 257 E-AQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLP 315

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +   L+  K +  +  +  +  +  + NA I  + +CG +  + ++F  M+ +T+ S
Sbjct: 316 VCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSS 375

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           W +++ G A +    +A+ L+ +M ++G+ PD      LL ACS    +  G E    ++
Sbjct: 376 WNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFAL 435

Query: 240 KNDFGIIPKI 249
           +N   + P I
Sbjct: 436 RNGLAVDPFI 445


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 312/502 (62%), Gaps = 36/502 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+++T+ FV+ +C+    L  G+ VHG V+K  F  +++V N++++M  S    +E  
Sbjct: 174 VVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINM-CSVFARMEDA 232

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM----------QISG-------- 107
           RKVF++MSERD  SW++++GGYA+ G    A +LF  M           ISG        
Sbjct: 233 RKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYP 292

Query: 108 --------------VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
                         V P+E  +V VLSAC  LGAL+ G W+  +I+K  + +S  +  AL
Sbjct: 293 EALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTAL 352

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM+AKCG +D A ++F  +  R ++S+TS+I+GL+ HG G +A+ +F +ML+  V P++
Sbjct: 353 IDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNE 412

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           +  +G+L+ CSH GLV++G     +M++ +GI PKIEHYGC +D+L R+G ++ A E ++
Sbjct: 413 ITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVK 472

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EPMHESNYVLLSHIYAKLLRW 331
            MP+E + +IWR L+SA      + L E I    IG      H    VLLS++YA L RW
Sbjct: 473 TMPMEPDIVIWRALLSASRIHHNVNLGEQIISH-IGQLKSSDHNGGEVLLSNLYASLGRW 531

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E+ T++R++M  R  +  PG + IE++  ++EF   D+ H Q  EI   L+E+ +++ + 
Sbjct: 532 ERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQI 591

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GY   T +V  D+NEE+KE A+  HSEKLAIAF L+ T PGT IRIVKNLR C DCHSA 
Sbjct: 592 GYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSAL 651

Query: 452 KFISKIYNREIVVRDRHRFHHF 473
           K IS++Y REIVVRDR RFH F
Sbjct: 652 KTISQVYGREIVVRDRSRFHTF 673



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 43/296 (14%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T+  +L     +  L   + +H  V+      +  +  +L+H Y  C       R 
Sbjct: 72  PNPQTFSLLLNQRPKLSPL---QQIHAQVVTQALSSNASLTASLIHCY-LCAKNHPNARI 127

Query: 68  VFDEMSERDSVS--WSAMIGGYARLGLSTDAIDLF-RQMQISG---VCPDEITMVTVLSA 121
           +FD           W+ MI  Y+++  S + I LF R + + G   V PDE T   V+++
Sbjct: 128 LFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITS 187

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C+   +L  G+ V   + K     ++ + N++I+M +    ++ A K+F  M+ R + SW
Sbjct: 188 CSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSW 247

Query: 182 TSVIAGLAMH-------------------------------GRGLEAVALFEEML-EAGV 209
           TS++ G A H                               GR  EA+  F  ML +  V
Sbjct: 248 TSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRV 307

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
            P++   V +LSAC+H G +D+G  +     +  GI         ++DM  + GR+
Sbjct: 308 NPNEAVLVCVLSACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRI 362


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V P+  TY  +L     +GDL LGK +H  + K  F  +I V NTLV MY  C G
Sbjct: 466 MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKC-G 524

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVF+ M  RD ++W+ +I            + +  +M+  GV PD  TM+++L 
Sbjct: 525 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 584

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ L A   GK +   I K  +   V + N LI+M++KCG +  + ++F+ M  + +V+
Sbjct: 585 VCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVT 644

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+   M+G G +AV  F EM  AG+ PD VAFV ++ ACSH GLV++G  YF  MK
Sbjct: 645 WTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMK 704

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P+IEHY C+VD+L RS  + +A +FI  MP++ +  IW  L+SAC   G+ ++A
Sbjct: 705 KDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIA 764

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + +++R+I   P     YVL+S++YA L +W++   IR+ +  RG+KK PG + +E+ N+
Sbjct: 765 QRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNK 824

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F  G K   Q +E+ ++L  +   M K GY+     VL DI+E++K D L  HSE+L
Sbjct: 825 VYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERL 884

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGTP++++KNLRVC DCH+ TK+ISKI  RE++VRD +RFH FKD
Sbjct: 885 AIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKD 939



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 5/303 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ +T   VL+AC G+G +  G  +HG + K     D+ V N L+ MY    G I+ 
Sbjct: 270 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLID- 328

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR++FD+M  RD+VSW+ MI GY+++GL  ++I LF +M ++   PD +T+ ++L AC  
Sbjct: 329 GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGH 387

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG LE GK+V  ++            N LI+M+AKCG++  + ++F  M  +  VSW S+
Sbjct: 388 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 447

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I     +G   EA+ LF +M++  V PD V +V LLS  +  G +  G+E    +    G
Sbjct: 448 INVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MG 505

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               I     +VDM  + G + ++ +  + M    + I W T+I++C    +  L   + 
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMI 564

Query: 305 KRL 307
            R+
Sbjct: 565 SRM 567



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIEL 64
           + P+ +T+P V+ ACAG+ D  + KS+H  VL   FG D+++ N L+ MY  C    ++ 
Sbjct: 170 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMY--CRFNDLDK 227

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVF+EM  RD VSW+++I GY   G   +A++++ + +  GV PD  TM +VL AC  
Sbjct: 228 ARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGG 287

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG++E G  +   IEK  + + V + N L+ M+ K   +    ++F  M  R  VSW ++
Sbjct: 288 LGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTM 347

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G +  G   E++ LF EM+     PD +    +L AC H G ++ G+   D M    G
Sbjct: 348 ICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-G 405

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                     +++M  + G +  + E    M  + + + W ++I+     G    A  + 
Sbjct: 406 YECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLF 464

Query: 305 KRLIGNEPMHESNYVLLSHIYAKL 328
           K +  +       YV+L  +  +L
Sbjct: 465 KMMKTDVKPDSVTYVMLLSMSTQL 488



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   +L+AC  +GDL  GK VH  ++   +  D    N L++MY  C G +   ++
Sbjct: 373 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC-GNLLASQE 431

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  M  +DSVSW++MI  Y + G   +A+ LF+ M+ + V PD +T V +LS  T LG 
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGD 490

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +GK +   + K   N ++ + N L+DM+AKCG++  +LK+F +M  R I++W ++IA 
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
                     + +   M   GV PD    + +L  CS      +G+E    +    G+  
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLES 609

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +     +++M  + G ++ + +  + M  + + + W  LISAC   GE K A
Sbjct: 610 DVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKA 661



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 6/239 (2%)

Query: 68  VFDEMSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VF   S  ++V  W+++I      GL ++A+ L+ + Q   + PD  T  +V++AC  L 
Sbjct: 129 VFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 188

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
             E+ K +   +        + + NALIDM+ +  D+DKA K+F  M  R +VSW S+I+
Sbjct: 189 DFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 248

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G   +G   EA+ ++      GV PD      +L AC   G V++G +    +    GI 
Sbjct: 249 GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIK 307

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             +     ++ M C+   + +      KM +  + + W T+I   C   ++ L E   K
Sbjct: 308 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLR-DAVSWNTMI---CGYSQVGLYEESIK 362



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR-SMNGRTIVSWTSVIAGLAMHG 192
           + S I    ++ SV     LI  +A   D   +  +FR +     +  W S+I  L  +G
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN------DFGII 246
              EA++L+ E     + PD   F  +++AC+  GL+D     F+  K+        G  
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLD-----FEMAKSIHDRVLXMGFG 206

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
             +     ++DM CR   + +A +  ++MP+  + + W +LIS   A G    A  I  R
Sbjct: 207 SDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISGYNANGYWNEALEIYYR 265

Query: 307 L 307
            
Sbjct: 266 F 266


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/474 (40%), Positives = 294/474 (62%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+  +   +   + ACAGI  LN G+ +H       + +D+ + N LV +Y  C G
Sbjct: 507 MENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARC-G 565

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +     F+++  +D++SW+A+I G+A+ G   +A+ +F QM  +GV  +  T  + +S
Sbjct: 566 RAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVS 625

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +   ++ GK + + + K   +      N LI +++KCG ++ A + F  M  + +VS
Sbjct: 626 ATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVS 685

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG G EAV+LFEEM + G+ P+ V FVG+LSACSH GLV++G  YF SM 
Sbjct: 686 WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G++PK EHY C+VD+L R+  +  A EFI++MPIE + +IWRTL+SAC     +++ 
Sbjct: 746 KEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIG 805

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + L+  EP   + YVLLS++YA   +W+ + + R++M  RG+KK PG + IE+ N 
Sbjct: 806 EFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNS 865

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  GD+ H  +++IYE +D++  +  + GYV     +L D+ +E K+     HSEKL
Sbjct: 866 IHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKL 925

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF LL      PIR++KNLRVCNDCH+  KF+SKI NR IVVRD +RFHHF+
Sbjct: 926 AVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFE 979



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 181/350 (51%), Gaps = 9/350 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN++TYP +L+ C  +G L+LG+ +H  V+K  F  +++V + L+ MY    G ++ 
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAK-HGELDT 468

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +   + E D VSW+AMI GY +  L  +A+ LF++M+  G+  D I   + +SAC  
Sbjct: 469 ARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528

Query: 125 LGALEVGKWV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + AL  G+ +  +S+I     + S+G  NAL+ ++A+CG    A   F  ++ +  +SW 
Sbjct: 529 IQALNQGQQIHAQSYISGYSEDLSIG--NALVSLYARCGRAQDAYLAFEKIDAKDNISWN 586

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+G A  G   EA+ +F +M +AGV  +   F   +SA ++   + +G++   +M   
Sbjct: 587 ALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQ-IHAMMIK 645

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G   + E    ++ +  + G +++A     +MP E N + W  +I+     G    A S
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVS 704

Query: 303 ITKRL--IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350
           + + +  +G  P H +   +LS      L  E  +  R +  + G+   P
Sbjct: 705 LFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP 754



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 163/315 (51%), Gaps = 15/315 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   +L ACA +G    GK +H  V+K     D+ ++ +L+ +Y  C   IE   +
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKC-FDIETAHE 370

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
            F      + V W+ M+  Y +LG  +++  +F QMQI G+ P++ T  ++L  CT LGA
Sbjct: 371 YFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGA 430

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L++G+ + + + K     +V +C+ LIDM+AK G++D A  + + +    +VSWT++IAG
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-----YFDSMKND 242
              H    EA+ LF+EM   G+  D++ F   +SAC+    +++G++     Y      D
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSED 550

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
             I         +V +  R GR ++A+   +K+  + N I W  LIS     G  + A  
Sbjct: 551 LSI------GNALVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQ 603

Query: 303 ITKRLIGNEPMHESN 317
           +  ++  N+   E+N
Sbjct: 604 VFSQM--NQAGVEAN 616



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 4/298 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+   V+P++ T+  VL+AC+G      + + +H  ++   FG    V N L+ +Y S  
Sbjct: 102 MITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLY-SKN 160

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L + VF+ +  +DSVSW AMI G ++ G   +AI LF QM  S V P      +VL
Sbjct: 161 GHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVL 220

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT +   ++G+ +  FI K  ++    +CNAL+ ++++ G++  A ++F  M+ R  +
Sbjct: 221 SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ S+I+GLA  G    A+ LFE+M    + PD V    LLSAC+  G   KG++   S 
Sbjct: 281 SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ-LHSY 339

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
               G+   +   G ++D+  +   ++ AHE+      E N ++W  ++ A    G L
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE-NVVLWNVMLVAYGQLGNL 396



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 152/292 (52%), Gaps = 9/292 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P  + +  VL AC  I    LG+ +HG ++K+    +  V N LV +Y S  G
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLY-SRWG 262

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    ++F +M  RD +S++++I G A+ G S  A+ LF +MQ+  + PD +T+ ++LS
Sbjct: 263 NLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS 322

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +GA   GK + S++ K  ++  + +  +L+D++ KC D++ A + F +     +V 
Sbjct: 323 ACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVL 382

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W  ++      G   E+  +F +M   G+ P+   +  +L  C+  G +D G + +   +
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           K+ F    +   Y C  ++DM  + G +  A   +Q++  E + + W  +I+
Sbjct: 443 KSGF----QFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIA 489



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 6/297 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           M E G+  N  TY ++ + C   G L   K +H  + K  F G+D+ + + L+ +Y +  
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLA-H 58

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++   K+FD++   +   W+ +I G     L++  + LF  M    V PDE T  +VL
Sbjct: 59  GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 120 SACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            AC+   A  +V + + + I       S  +CN LID+++K G VD A  +F  +  +  
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW ++I+GL+ +GR  EA+ LF +M ++ V P    F  +LSAC+   L   G E    
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG-EQLHG 237

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               +G+  +      +V +  R G +  A +   KM    + I + +LIS    RG
Sbjct: 238 FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH-RRDRISYNSLISGLAQRG 293


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/476 (42%), Positives = 295/476 (61%), Gaps = 6/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P++     +L A A +        V+  V++     D  VQ+    M+  C G
Sbjct: 102 MLSEGSRPSRGA---ILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARC-G 157

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E+ RK+FD +  +D V+W+  I  Y +  +  +A+ L +QM + G+ PD IT++ V+ 
Sbjct: 158 RVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIR 217

Query: 121 ACTDLGALEVGKWVESFIEKQMV-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ L + ++   V   I      N+ + +  ALID++ KCG +  A K+F  M  R I+
Sbjct: 218 ACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNII 277

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W+++I+G  MHG G EA+ LF++M +A V PD + FV +LSACSH GLV +G E F+SM
Sbjct: 278 TWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSM 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             DFG+ P+ EHY CMVD+L R+G++ EA +FI++MP+  N  +W  L+ AC     + L
Sbjct: 337 ARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDL 396

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE + + L   +P +   YV+L +IY    + ++   IR +M  RG+KKI G ++IE+ N
Sbjct: 397 AEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKN 456

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++Y FV GD+SH Q+  IY  L+ +  ++++ GY P  + VL D++EE KE  L  HSEK
Sbjct: 457 KLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEK 516

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI F LL   PG+ IRI KNLRVC DCH+ATKFISK+  REIVVRD HRFHHFK+
Sbjct: 517 LAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKN 572



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 144/290 (49%), Gaps = 5/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ FT+PF++KAC+ +     G  +H  V+KF +   + + N+L+ MYG C+ 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCD- 59

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             EL R+VFDEM ++++VSWSA+IG   +     +   LFRQM   G  P   +   +L+
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILN 116

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   + + E    V   + +  ++    + +A   MFA+CG V+ A KLF  +  + +V+
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W + I         LEA+ L ++M+  G+ PD +  +G++ ACS              + 
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
             F     +     ++D+  + G +  A +    M  E N I W  +IS 
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISG 285


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 293/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+ FT   +L AC+ +  L+ G+ +HG  L+     D  +  +L+ +Y  C G
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICC-G 359

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                + +FD M  R  VSW+ MI GY++ GL  +AI+LFRQM   G+ P EI ++ V  
Sbjct: 360 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG 419

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL +GK +  F  K  +   + + +++IDM+AK G +  + ++F  +  + + S
Sbjct: 420 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 479

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +IAG  +HGRG EA+ LFE+ML  G+ PDD  F G+L ACSH GLV+ G EYF+ M 
Sbjct: 480 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 539

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N   I PK+EHY C+VDML R+GR+ +A   I++MP + +  IW +L+S+C   G L L 
Sbjct: 540 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLG 599

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +  +L+  EP    NYVL+S+++A   +W+   ++R  M   G++K  G + IE+  +
Sbjct: 600 EKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 659

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GD+   + +E+ E    +  K+   GY P T  VL D+ EEDK   L  HSEKL
Sbjct: 660 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKL 719

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL T  G P+R+ KNLR+C DCH+A KFISK+ NR+IVVRD  RFHHF+D
Sbjct: 720 AISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRD 774



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT P V+KACAG+ DL LG+ +HG   K     D+ V N L+ MYG C    E  ++
Sbjct: 206 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKR 265

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M  +   SW+A++ GYA+      A+DL+ QM  SG+ PD  T+ ++L AC+ + +
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325

Query: 128 LEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           L  G+ +  F  +    V+  +G+  +L+ ++  CG    A  LF  M  R++VSW  +I
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGI--SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 383

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG + +G   EA+ LF +ML  G+ P ++A + +  ACS    +  G+E          +
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHL 442

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              I     ++DM  + G +  +     ++  E +   W  +I+     G  K A  + +
Sbjct: 443 TEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFE 501

Query: 306 RLI 308
           +++
Sbjct: 502 KML 504



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 5/238 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAV-LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           +L+AC    D+ +G+ +H  V    QF +D  +   ++ MY  C G     R VFD++  
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMC-GSPSDSRMVFDKLRR 169

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKW 133
           ++   W+A++  Y R  L  DA+ +F ++  ++   PD  T+  V+ AC  L  L +G+ 
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK-LFRSMNGRTIVSWTSVIAGLAMHG 192
           +     K  +   V + NALI M+ KCG V++A+K +F  M+ +T+ SW +++ G A + 
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKI 249
              +A+ L+ +M ++G+ PD      LL ACS    +  G E    +++N   + P I
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 307/507 (60%), Gaps = 33/507 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+P  +K+C+ + DL+ G+  H   L F F  D+ V + LV MY  C G
Sbjct: 67  MRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKC-G 125

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGY-------------------------------AR 89
            +   R +FDE+S R+ VSW++MI GY                               A+
Sbjct: 126 ELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQ 185

Query: 90  LGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            G+ST+++++F +M   G +  + +T+  VL AC   G+  +GK +   + K  +  +V 
Sbjct: 186 NGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVF 245

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  ++IDM+ KCG V+ A K F  M  + + SW++++AG  MHG   EA+ +F EM  AG
Sbjct: 246 VGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG 305

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V P+ + FV +L+ACSH GL+++G  +F +M ++F + P +EHYGCMVD+L R+G +KEA
Sbjct: 306 VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA 365

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
            + I+ M +  + ++W  L+ AC     + L E   ++L   +P +   YVLLS+IYA  
Sbjct: 366 FDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADA 425

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            RWE   ++R +M   G+ K PG +L+++   ++ F+ GD+ H Q ++IYE L+++  K+
Sbjct: 426 GRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKL 485

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           ++ GYVP  + VL D+  E+KE  L  HSEKLA+AF ++ T PGT I I+KNLRVC DCH
Sbjct: 486 QEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCH 545

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A KFISKI +REIVVRD  RFHHF+D
Sbjct: 546 TAIKFISKIVDREIVVRDSKRFHHFRD 572



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 117/244 (47%), Gaps = 8/244 (3%)

Query: 68  VFDEMSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +F++  ++ +V SW+++I   AR G S +A+  F  M+   + P+  T    + +C+ L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L  G+              + + +AL+DM++KCG++  A  LF  ++ R IVSWTS+I 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G   +     A+ +F+ M E     D +++  +++  +  G+  +  E F  M  D  I 
Sbjct: 151 GYVQNDDAHRALRVFDGMAER----DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 206

Query: 247 PKIEHYGCMVDMLCRSGRVKEA---HEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                   ++     SG  +     H+ + KM +E+N  +  ++I   C  G++++A   
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 266

Query: 304 TKRL 307
             R+
Sbjct: 267 FDRM 270


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/473 (42%), Positives = 304/473 (64%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV   +  +  V+K CA I +++  K +H  V+K     D++++  L+  Y  C   I+ 
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE-IDD 347

Query: 65  GRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSAC 122
             K+F  M   ++ VSW+A+I GY + G +  A++LF QM+   GV P+E T  +VL+AC
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNAC 407

Query: 123 T-DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                ++E GK   S   K   + ++ + +AL+ M+AK G+++ A ++F+    R +VSW
Sbjct: 408 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSW 467

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S+I+G A HG G +++ +FEEM    +  D + F+G++SAC+H GLV++G+ YFD M  
Sbjct: 468 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 527

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           D+ I+P +EHY CMVD+  R+G +++A + I KMP  A   IWRTL++AC     ++L E
Sbjct: 528 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 587

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
              ++LI  +P   + YVLLS+IYA    W+++ K+R++MD + +KK  G + IE+ N+ 
Sbjct: 588 LAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKT 647

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F+ GD SH QS  IY  L+E+  ++K AGY P T  VL D+ EE KE  L++HSE+LA
Sbjct: 648 FSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLA 707

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAF L+ TPPGTPI+IVKNLRVC DCH+  K ISKI  R+IVVRD +RFHHFK
Sbjct: 708 IAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFK 760



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN FT+  VL   A  G +  G  VH  V+K      I V N++V+MY S    +  
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY-SKSLMVSD 246

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + VFD M  R++VSW++MI G+   GL  +A +LF +M++ GV   +    TV+  C +
Sbjct: 247 AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTS 183
           +  +   K +   + K   +  + +  AL+  ++KC ++D A KLF  M+G + +VSWT+
Sbjct: 307 IKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTA 366

Query: 184 VIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSH-CGLVDKGREYFD-SMK 240
           +I+G   +GR   A+ LF +M  E GV P++  F  +L+AC+     V++G+++   S+K
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 426

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC----CARGE 296
           + F     +     +V M  + G ++ A+E + K  ++ + + W ++IS      C +  
Sbjct: 427 SGFSNALCVS--SALVTMYAKRGNIESANE-VFKRQVDRDLVSWNSMISGYAQHGCGKKS 483

Query: 297 LKLAESITKR 306
           LK+ E +  +
Sbjct: 484 LKIFEEMRSK 493



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 36/313 (11%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VLK C  + D  +GK VH   +K  F +D+ V  +LV MY   E  +E G +VFDEM  +
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES-VEDGERVFDEMRVK 156

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW++++ GY + GL+  A+ LF QMQ+ G+ P+  T   VL      GA+E G  V 
Sbjct: 157 NVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           + + K  ++ ++ + N++++M++K   V  A  +F SM  R  VSW S+IAG   +G  L
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGREYFDSMKNDFG 244
           EA  LF  M   GV      F  ++  C+           HC ++  G ++  ++K    
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM 336

Query: 245 I--------------------IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP----IEAN 280
           +                    +  +  +  ++    ++GR   A     +M     +E N
Sbjct: 337 VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPN 396

Query: 281 PIIWRTLISACCA 293
              + ++++AC A
Sbjct: 397 EFTFSSVLNACAA 409



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 9/222 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           E GV PN+FT+  VL ACA     +  GK  H   +K  F + + V + LV MY    G 
Sbjct: 390 EEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAK-RGN 448

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           IE   +VF    +RD VSW++MI GYA+ G    ++ +F +M+   +  D IT + V+SA
Sbjct: 449 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISA 508

Query: 122 CTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM---NGRT 177
           CT  G +  G ++ +  ++   +  ++   + ++D++++ G ++KA+ L   M    G T
Sbjct: 509 CTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGAT 568

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           I  W +++A   +H   ++   L  E L +  P D  A+V L
Sbjct: 569 I--WRTLLAACRVH-LNVQLGELAAEKLISLQPQDSAAYVLL 607



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 2/230 (0%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +++FDE  ++     + ++  ++R   + +A++LF  ++ SG   D  ++  VL  C  L
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
               VGK V     K      V +  +L+DM+ K   V+   ++F  M  + +VSWTS++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG   +G   +A+ LF +M   G+ P+   F  +L   +  G V+KG +   +M    G+
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGL 224

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              I     MV+M  +S  V +A      M    N + W ++I+     G
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNG 273


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 291/479 (60%), Gaps = 7/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G SPN+ T+  +L   + +    L   +H  +LK+   DD  ++N L+  YG   G
Sbjct: 297 MMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGK-SG 355

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +E   ++F  MSER D VSW++MI GY    L   A+DL   M   G   D  T  TVL
Sbjct: 356 EMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVL 415

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  +  LE G  V +   +  +   V + +AL+DM++KCG +D A + F  M  R + 
Sbjct: 416 SACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLY 475

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG G  A+ LF  M  +G  PD + FVG+LSACSH GLVD+G EYF SM
Sbjct: 476 SWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSM 535

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG---E 296
              +G++P++EHY CMVD+L R+G + +   FI KMPI+ N +IWRT++ ACC RG   +
Sbjct: 536 TEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACC-RGNGRK 594

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
            +L     + L   +P +  NYVLLS++YA   +WE   + R  M +  +KK  G + + 
Sbjct: 595 TELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVT 654

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           + + ++ FV GD SH +   IY  L E+ +K++ AGYVP     L D+  E+KE+ L+ H
Sbjct: 655 MKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYH 714

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SEKLA+AF L +   G PIRI+KNLRVC DCHSA K+ISK+ +R IV+RD +RFHHF+D
Sbjct: 715 SEKLAVAFVLTRN-SGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFED 772



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 5/293 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSC 58
           M+  G  PN+F +   ++AC   +     G+ VHG  ++    D  + V N L++MY  C
Sbjct: 92  MIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKC 151

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G I+  R VF  M ++DSVSW++MI G  +     DA+  +  M+ +G+ P    +++ 
Sbjct: 152 -GDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISA 210

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LS+C  LG + +G+       K  ++  V + N L+ ++A+   + +  K+F  M  R  
Sbjct: 211 LSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQ 270

Query: 179 VSWTSVIAGLAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           VSW +VI  LA  G  + EA+ +F EM+ AG  P+ V F+ LL+  S      K      
Sbjct: 271 VSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS-TSKLSHQIH 329

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           ++   + +         ++    +SG ++   E   +M    + + W ++IS 
Sbjct: 330 ALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG 382



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 16/277 (5%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCEGGIELGRKVFDEMSERDSVSWS 81
           D NL    H  VLK  F  D+ + NTL+++Y   G C       RK+FDEM +R+ V+W+
Sbjct: 18  DANL---FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSA----RKLFDEMPDRNGVTWA 70

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD-LGALEVGKWVESFIEK 140
            +I GY + G+  DA  + ++M   G  P+     + + AC + +     G+ V  +  +
Sbjct: 71  CLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIR 130

Query: 141 QMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
             +N + V + N LI+M+AKCGD+D A  +F  M  +  VSW S+I GL  +    +AV 
Sbjct: 131 TGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVK 190

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDM 258
            +  M + G+ P + A +  LS+C+  G +  G++ + + +K   G+   +     ++ +
Sbjct: 191 SYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK--LGLDMDVSVSNTLLAL 248

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              + R+ E  +    M +E + + W T+I A    G
Sbjct: 249 YAETSRLAECQKVFSWM-LERDQVSWNTVIGALADSG 284



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           LCN LI+++ + GD   A KLF  M  R  V+W  +I+G   +G   +A  + +EM+  G
Sbjct: 37  LCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEG 96

Query: 209 VPPDDVAFVGLLSACSHCGLV-DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
             P+  AF   + AC    L   KGR+             K+     +++M  + G +  
Sbjct: 97  FLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDH 156

Query: 268 AHEFIQKMPIEANPIIWRTLISAC----CARGELKLAESITKRLIGNEPMHESNYVLLSH 323
           A      M ++ + + W ++I+      C    +K   S+ K       +  SN+ L+S 
Sbjct: 157 ARSVFGLM-VDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK-----TGLMPSNFALISA 210

Query: 324 I 324
           +
Sbjct: 211 L 211


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 297/475 (62%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PN FTY  VL+AC G+ +L   + +H  ++K     D+ V++ L+ +Y S  G
Sbjct: 57  MLREGVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVY-SRWG 112

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VFDEM   D V WS++I G+A+     +A+ LF++M+ +G    + T+ +VL 
Sbjct: 113 ELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLR 172

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G+ V   + K   ++ + L NAL+DM+ KCG ++ A  +F  M  + ++S
Sbjct: 173 ACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVIS 230

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IAGLA +G   EA+ LFE M   G+ P+ V  VG+L ACSH GLV++G  YF SMK
Sbjct: 231 WSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK 290

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P  EHYGCM+D+L R+GR+ EA + I +M  E + + WR L++AC     + +A
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVA 350

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               K+++  +P     YVLLS+IYA   RW    ++R  M  RG+KK PG + IE+  +
Sbjct: 351 IHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD+SH Q +EI   L+++  K+   GYVP T+ VL D+  E  +D+L  HSEKL
Sbjct: 411 IHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKL 470

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F L+  P G  IRI KNLR+C DCH  TK ++K+  R IV+RD  R+HHF+D
Sbjct: 471 AIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQD 525



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 20/276 (7%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N L++MY    G +   + VFD+M +R+ VSW+ MI  Y+   L+  A++    M   GV
Sbjct: 4   NILINMYVKF-GLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV 62

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P+  T  +VL AC  L  L   + +   I K  ++  V + +ALID++++ G+++ AL+
Sbjct: 63  RPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M    +V W+S+IAG A +  G EA+ LF+ M  AG          +L AC+   L
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 229 VDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           ++ GR+ +   +K D  +I        ++DM C+ G +++A+    +M +E + I W T+
Sbjct: 180 LELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTM 234

Query: 288 ISACCARG----ELKLAESITKRLIGNEPMHESNYV 319
           I+     G     LKL ES+  +++G +P    NYV
Sbjct: 235 IAGLAQNGYSKEALKLFESM--KVLGIKP----NYV 264



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N LI+M+ K G +  A  +F  M  R +VSWT++I+  +      +A+     ML  G
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V P+   +  +L AC   GL +  + +   +K   G+   +     ++D+  R G ++ A
Sbjct: 62  VRPNMFTYSSVLRACD--GLFNLRQLHCCIIK--IGLDSDVFVRSALIDVYSRWGELENA 117

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
                +M +  + ++W ++I+      +   A  + KR+
Sbjct: 118 LRVFDEM-VTGDLVVWSSIIAGFAQNSDGDEALRLFKRM 155


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/426 (44%), Positives = 281/426 (65%), Gaps = 1/426 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N +V     C G IE  R++F+EM E++ +SWSAMI GY + G   +A+++F  MQ   +
Sbjct: 231 NVMVSGMAKC-GMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEI 289

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P +  + +VL+AC +LGAL+ G+W+ +++     +    L  AL+DM+AKCG +D A  
Sbjct: 290 RPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWD 349

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  + + +W ++I GL MHGR  +A+ LF +M +    P+ +  +G+LSAC+H G+
Sbjct: 350 VFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGM 409

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G   F+SM+  +GI P +EHYGC+VD+L R+G + EA E +  MP+E +  +W  L+
Sbjct: 410 VDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALL 469

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            AC   G+++L E + K L+  EP +   Y LLS+IYA+  RW+    +R++M +RG+K 
Sbjct: 470 GACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKT 529

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
             G ++I+ D  ++EF  GD SH Q K IY ML  M +++K  G+ P TS+VL DI EE+
Sbjct: 530 STGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEE 589

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           KE  L  HSEKLAIAF L+ T PGT I +VKNLR+C DCHSA K IS++Y+REI+VRDR 
Sbjct: 590 KEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRA 649

Query: 469 RFHHFK 474
           R+HHFK
Sbjct: 650 RYHHFK 655



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 48/284 (16%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNKFTYP + KAC        G  VH  V+K     D+H+++  + MYGS  G +E  R+
Sbjct: 128 PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSF-GEVEGARR 186

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +  E    D + ++AMI GY + G    A +LF  M+                       
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME----------------------- 223

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
                           +++VG  N ++   AKCG +++A +LF  M  +  +SW+++I G
Sbjct: 224 ----------------DKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDG 267

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFG 244
               G   EA+ +F  M    + P       +L+AC++ G +D+GR    Y ++  N F 
Sbjct: 268 YIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFD 327

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            +        +VDM  + GR+  A +  +KM  +     W  +I
Sbjct: 328 AVLGT----ALVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMI 366



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 36/380 (9%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K VH   L+     D +V  TLV  Y +     +    KVF+ +   +   ++ +I G  
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           +      AI  + +M I+   P++ T  T+  ACT   A E G  V + + KQ ++  V 
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + +A I M+   G+V+ A ++        ++ + ++I G    G    A  LF  M +  
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V   +V    ++S  + CG++++ RE F+ MK    I      +  M+D   + G  KEA
Sbjct: 227 VGSWNV----MVSGMAKCGMIEEARELFNEMKEKNEI-----SWSAMIDGYIKGGYYKEA 277

Query: 269 HE---FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY-VLLSHI 324
            E    +Q+  I     +  ++++AC   G L     I   +  N    ++     L  +
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDM 337

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF---VCGDKSHHQSKEIYEML 381
           YAK  R +    + E M+K+               E++ +   +CG   H ++++  E+ 
Sbjct: 338 YAKCGRLDMAWDVFEKMEKK---------------EVFTWNAMICGLGMHGRAEDAIELF 382

Query: 382 DEMGRKMKKAGYVPTTSEVL 401
                KM+K  + P    +L
Sbjct: 383 ----FKMQKQKFRPNGITLL 398


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/486 (41%), Positives = 294/486 (60%), Gaps = 13/486 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-------DDIHVQNTLVH 53
           M  YG+ PN  T   +L  CA +G L  GK  H  V+K           DD+ V N L+ 
Sbjct: 361 MQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLID 420

Query: 54  MYGSCEGGIELGRKVFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQM--QISGVC 109
           MY  C+    + R +FD +  +D   V+W+ MIGGYA+ G + DA+ LF Q+  Q + + 
Sbjct: 421 MYAKCKS-YRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLK 479

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
           P+  T+   L AC  LG L +G+ + ++ +  +  +  + + N LIDM++K GD+D A  
Sbjct: 480 PNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARA 539

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  R +VSWTS++ G  MHGRG EA+ LF++M + G   D + F+ +L ACSH G+
Sbjct: 540 VFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGM 599

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G  YF  M   FGI P  EHY CMVD+L R+GR+ EA E I+ M +E   ++W  L+
Sbjct: 600 VDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALL 659

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           SA      ++L E    +L      ++ +Y LLS++YA   RW+   +IR +M   G++K
Sbjct: 660 SASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRK 719

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
            PG + I+       F  GD+SH +S++IY +L ++ +++K  GYVP TS  L D+++E+
Sbjct: 720 RPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEE 779

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           K D L +HSEKLA+A+ +L T PG PIRI KNLR+C DCHSA  +IS I + EIV+RD  
Sbjct: 780 KGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSS 839

Query: 469 RFHHFK 474
           RFHHFK
Sbjct: 840 RFHHFK 845



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 170/371 (45%), Gaps = 67/371 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ +T+PFVLKAC  I  L  G SVH  V     G ++ + N++V MYG C G
Sbjct: 118 MQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRC-G 176

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQM---QISGVCPDEIT 114
            ++   ++FDE+ ER   D VSW++++  Y + G S  A+ +  +M       + PD IT
Sbjct: 177 ALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAIT 236

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-------------- 160
           +V +L AC  + AL+ GK V  F  +  +   V + NAL+ M+AKC              
Sbjct: 237 LVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK 296

Query: 161 -----------------GDVDKALKLFRSMNGRTI----VSWTSVIAGLAMHGRGLEAVA 199
                            G  D AL LF+ M    I    ++W++VIAG A  G G EA+ 
Sbjct: 297 KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALD 356

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY------------FDSMKNDFGIIP 247
           +F +M   G+ P+ V    LLS C+  G +  G++             ++  ++D  ++ 
Sbjct: 357 VFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416

Query: 248 KIEHYGCMVDML--CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE----LKLAE 301
                  ++DM   C+S RV  +  F      + N + W  +I      GE    LKL  
Sbjct: 417 G------LIDMYAKCKSYRVARS-IFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFA 469

Query: 302 SITKRLIGNEP 312
            I K+    +P
Sbjct: 470 QIFKQKTSLKP 480



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 140/314 (44%), Gaps = 21/314 (6%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKS---VHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +  SP       +L+ C  + +  L      VHG    F +    +++       G+   
Sbjct: 24  FTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIEC------GASAE 77

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L +++    S      W+A+I    +LGL  D +  + QMQ  G  PD  T   VL 
Sbjct: 78  AVSLLQRLIP--SHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLK 135

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT--- 177
           AC ++ +L  G  V + +    +  +V +CN+++ M+ +CG +D A ++F  +  R    
Sbjct: 136 ACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIED 195

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEM---LEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           IVSW S++A     G+   A+ +   M       + PD +  V +L AC+    +  G++
Sbjct: 196 IVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ 255

Query: 235 YFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               S++N  G++  +     +V M  +  ++ EA++  + +  + + + W  +++    
Sbjct: 256 VHGFSVRN--GLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTGYSQ 312

Query: 294 RGELKLAESITKRL 307
            G    A S+ K +
Sbjct: 313 IGSFDSALSLFKMM 326


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/470 (42%), Positives = 295/470 (62%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN+FT+  VL++CA I +L LGK VH  VLK     ++ V N L+ +Y  C G ++  
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKC-GRLDNS 297

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K+F E+  R+ V+W+ MI GY + G    A+ L++ M    V   E+T  +VL AC  L
Sbjct: 298 MKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            A+E+G  + S   K + ++ V + NALIDM+AKCG +  A  +F  ++ R  +SW ++I
Sbjct: 358 AAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMI 417

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G +MHG   EA+  F+ M E    P+ + FV +LSACS+ GL+D G+ YF SM  D+GI
Sbjct: 418 SGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGI 477

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P +EHY CMV +L RSG + +A + I+++P+E N  +WR L+ AC    ++ L     +
Sbjct: 478 EPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQ 537

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +++  +P  E+ +VLLS+IYA+  RW     +R+ M  +G+KK PG + IE    ++ F 
Sbjct: 538 QILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFS 597

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD SH   K I  ML+ +  K +KAGYVP  + VL D+ +++K+  L  HSE+LA+AF 
Sbjct: 598 VGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFG 657

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L++TP    IRI+KNLR+C DCHSA K ISKI  R+I++RD +RFHHF+D
Sbjct: 658 LIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQD 707



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 163/292 (55%), Gaps = 5/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G +PN FT+  VLKAC G+   ++GKSVHG VLK  +  D++V   L+ +Y       ++
Sbjct: 137 GFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDV 196

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF+EM + D + WS MI  YA+   S +A++LF QM+ + V P++ T  +VL +C  
Sbjct: 197 LR-VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCAS 255

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  L++GK V   + K  ++ +V + NAL+D++AKCG +D ++KLF  +  R  V+W ++
Sbjct: 256 IENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTM 315

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDF 243
           I G    G G +A++L++ MLE  V   +V +  +L AC+    ++ G +    S+K  +
Sbjct: 316 IVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY 375

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                +     ++DM  + G +K A   +  M  E + I W  +IS     G
Sbjct: 376 D--KDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHG 424



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 176/391 (45%), Gaps = 16/391 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F +  +LK    +    L  S+H  + K     +  V   L+  Y  C G +   R+ 
Sbjct: 40  NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVC-GSVNSARQA 98

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD ++ +D VSW+ M+  YA      D++ LF +M++ G  P+  T   VL AC  L A 
Sbjct: 99  FDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAF 158

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            VGK V   + K      + +   L+D++ K GD +  L++F  M    ++ W+ +I+  
Sbjct: 159 SVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRY 218

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A   +  EAV LF +M  A V P+   F  +L +C+    +  G++    +    G+   
Sbjct: 219 AQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGN 277

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +     ++D+  + GR+  + +   ++P   N + W T+I      G+   A S+ K ++
Sbjct: 278 VFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNML 336

Query: 309 GNE-PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK--IPGSTLIELDNEIYEFV 365
             +    E  Y  +    A L   E  T+I  +  K    K  + G+ LI++  +     
Sbjct: 337 ECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAK----- 391

Query: 366 CGDKSHHQSKEIYEML---DEMGRKMKKAGY 393
           CG  S   ++ +++ML   DE+      +GY
Sbjct: 392 CG--SIKNARLVFDMLSERDEISWNAMISGY 420



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE  V  ++ TY  VL+ACA +  + LG  +H   LK  +  D+ V N L+ MY  C G
Sbjct: 335 MLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKC-G 393

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R VFD +SERD +SW+AMI GY+  GL  +A+  F+ MQ +   P+++T V++LS
Sbjct: 394 SIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILS 453

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC++ G L++G+ + +S ++   +   +     ++ +  + G +DKA+KL   +     V
Sbjct: 454 ACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNV 513

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
             W +++    +H      +   +++L+  + P D A   LLS
Sbjct: 514 KVWRALLGACVIHNDVDLGIMSAQQILQ--IDPQDEATHVLLS 554



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 14/224 (6%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M +R++VS+  +I GY +     + +DLF ++   G   +     T+L     +   E+ 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             + + I K     +  +  ALID +A CG V+ A + F ++  + +VSWT ++A  A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-- 249
            R  +++ LF EM   G  P+   F G+L AC        G E F   K+  G + K   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKTCY 173

Query: 250 ---EHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
               + G  ++D+  + G   +     ++MP + + I W  +IS
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMIS 216


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 302/493 (61%), Gaps = 26/493 (5%)

Query: 8    PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
            PN  T+  VL AC      +  + +HG ++K  FG D +VQN L+ MY S  G +E+ + 
Sbjct: 635  PNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMY-SRMGRVEISKT 693

Query: 68   VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI----------------SGVC-- 109
            +F  M++RD VSW+ MI G    G   DA++L  +MQ                  GV   
Sbjct: 694  IFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFK 753

Query: 110  PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
            P+ +T++TVL  C  L AL  GK + ++  KQ +   V + +AL+DM+AKCG ++ A ++
Sbjct: 754  PNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRV 813

Query: 170  FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG------VPPDDVAFVGLLSAC 223
            F  M  R +++W  +I    MHG+G EA+ LF  M   G      + P++V ++ + +AC
Sbjct: 814  FDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAAC 873

Query: 224  SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI- 282
            SH G+VD+G   F +MK   G+ P+ +HY C+VD+L RSGRVKEA+E I  MP   N + 
Sbjct: 874  SHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVD 933

Query: 283  IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
             W +L+ AC     ++  E   K L   EP   S+YVL+S+IY+    W++   +R+ M 
Sbjct: 934  AWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMK 993

Query: 343  KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
            + G++K PG + IE  +E+++F+ GD SH QSKE++E L+ + ++M+K GYVP  S VL 
Sbjct: 994  EMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLH 1053

Query: 403  DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
            ++++E+KE  L  HSE+LAIAF LL TPPGT IR+ KNLRVCNDCH ATK ISKI +REI
Sbjct: 1054 NVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREI 1113

Query: 463  VVRDRHRFHHFKD 475
            ++RD  RFHHF +
Sbjct: 1114 ILRDVRRFHHFAN 1126



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG--DDIHVQNTLVHMYGSCEGGIELGR 66
           + F +P VLKA A + DL LGK +H  V KF       + V N+LV+MYG C G +   R
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKC-GDLTAAR 387

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL- 125
           +VFD++ +RD VSW++MI    R      ++ LFR M    V P   T+V+V  AC+ + 
Sbjct: 388 QVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVR 447

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G + +GK V ++  +    R+    NAL+ M+A+ G V+ A  LF   +G+ +VSW +VI
Sbjct: 448 GGVRLGKQVHAYTLRNGDLRTY-TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           + L+ + R  EA+     M+  GV PD V    +L ACS    +  GRE       +  +
Sbjct: 507 SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDL 566

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           I        +VDM C   + K+       + +     +W  L+ A  AR E 
Sbjct: 567 IENSFVGTALVDMYCNCKQPKKGRLVFDGV-VRRTVAVWNALL-AGYARNEF 616



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 151/319 (47%), Gaps = 29/319 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH---VQNTLVHMYGS 57
           M+  GV P+  T   VL AC+ +  L +G+ +H   L+   GD I    V   LV MY +
Sbjct: 525 MIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN--GDLIENSFVGTALVDMYCN 582

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMV 116
           C+   + GR VFD +  R    W+A++ GYAR      A+ LF +M   S  CP+  T  
Sbjct: 583 CKQP-KKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFA 641

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +VL AC         + +  +I K+   +   + NAL+DM+++ G V+ +  +F  MN R
Sbjct: 642 SVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKR 701

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEML----------------EAGVP--PDDVAFVG 218
            IVSW ++I G  + GR  +A+ L  EM                 + GVP  P+ V  + 
Sbjct: 702 DIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMT 761

Query: 219 LLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           +L  C+    + KG+E +  ++K    +   +     +VDM  + G +  A     +MPI
Sbjct: 762 VLPGCAALAALGKGKEIHAYAVKQKLAM--DVAVGSALVDMYAKCGCLNLASRVFDQMPI 819

Query: 278 EANPIIWRTLISACCARGE 296
             N I W  LI A    G+
Sbjct: 820 R-NVITWNVLIMAYGMHGK 837



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +  R    W  ++          DAI  +  M  +   PD      VL A   +  L +G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 132 KWVESFIEK--QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           K + + + K       SV + N+L++M+ KCGD+  A ++F  +  R  VSW S+IA L 
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-GLVDKGREYFDSMKNDFGIIPK 248
                  ++ LF  ML   V P     V +  ACSH  G V  G++       +  +  +
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL--R 467

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                 +V M  R GRV +A         + + + W T+IS+
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISS 508


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 311/560 (55%), Gaps = 93/560 (16%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG------------------------- 42
           P+ FT P VLK CA +G L  GK +HG VLK  FG                         
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171

Query: 43  ------DDIHVQNTLVHMYGSC------------------------------EGGIELGR 66
                  D+   N+L+  Y  C                               G +E  R
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM----------QISG--------- 107
            VFD M  R+SVSW+AMI GY + G S  A +LF QM           I+G         
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291

Query: 108 ------------VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
                       + P+  T++  +SA + + +L  G+WV S+I K        L   LI+
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M++KCG V  AL++FRS+  + +  WTSVI GL MHG   + + LF+EM   G+ P  + 
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+G+L+ACSH G  +    YF  M  D+GI P IEHYGC++D+LCR+G ++EA + I++M
Sbjct: 412 FIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM 471

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           PI+AN +IW +L+S     G +++ E   + LI   P     YV+LS++YA    WEK  
Sbjct: 472 PIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVR 531

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
           ++RE+M K+GMKK PG + IE    I+EF+ GDKSH Q++EIY  L EM +K+  AG++P
Sbjct: 532 QVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIP 591

Query: 396 TTSEVLLDINEEDKEDA-LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
            T++VLL + E+++++A L  HSE+LAIAF LL    G+PIRI+KNLR+CNDCH+ TK +
Sbjct: 592 DTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLL 651

Query: 455 SKIYNREIVVRDRHRFHHFK 474
           S IYNREI++RD  RFHHFK
Sbjct: 652 SHIYNREIIIRDGSRFHHFK 671



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 15/277 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELGRKVFDEMS 73
           F L+ C    + N    +H   +K    +   V + L+ +Y       ++    +FD + 
Sbjct: 20  FPLQNCGTEREAN---QLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQ 76

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           E   VSW+ +I  Y     S DAI LF ++ +    PD  T+  VL  C  LGAL+ GK 
Sbjct: 77  EPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQ 135

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +   + K        + ++L+ M++KCG+++   K+F  M  + +VSW S+I G A  G 
Sbjct: 136 IHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGE 195

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
              A+ +FEEM E     D  ++  L+   S  G ++  R+ FD M      I     + 
Sbjct: 196 IELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDRMP-----IRNSVSWN 246

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            M++   ++G    A E   +MP E + + W ++I+ 
Sbjct: 247 AMINGYMKAGDSNTAKELFDQMP-ERSLVTWNSMITG 282



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   +SPN  T    + A +G+  L  G+ VH  ++K  F  D  +   L+ MY  C G
Sbjct: 299 MLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKC-G 357

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF  + ++    W+++I G    GL    ++LF +M  +G+ P  IT + VL+
Sbjct: 358 SVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLN 417

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC+  G A +  ++ +       +  S+     LID+  + G +++A      M  +   
Sbjct: 418 ACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANK 477

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGRE 234
           V WTS+++G   HG         + +++  + PD    +V L +  +  GL +K R+
Sbjct: 478 VIWTSLLSGSRKHGNIRMGEYAAQHLID--LAPDTTGCYVILSNMYAAAGLWEKVRQ 532


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 302/473 (63%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIE 63
           G+ P+  T   +    + + D  + +S+ G V++ ++ D D+ + N LV+MY    G + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL-GYMN 376

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSAC 122
               VFD++  +D++SW+ ++ GY + GL+++AID +  M+      P++ T V+++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + +GAL+ G  + + + K  +   V +   LID++ KCG ++ A+ LF  +   T V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++IA L +HGRG EA+ LF++ML   V  D + FV LLSACSH GLVD+G++ FD M+ +
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+L R+G +++A+E ++ MPI+ +  IW  L+SAC   G  +L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            + RL+  +  +   YVLLS+IYA   +WE   K+R +   RG++K PG + + + ++  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G+++H +  EIY+ L  +  KMK  GYVP  S V  DI E++KE  LN HSE+LAI
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ TPP +PIRI KNLRVC DCH+ATK+IS+I  REIVVRD +RFHHFKD
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKD 789



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 5/288 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +T+P +LKAC  + D   GK VH  V K  F DD+ V  +LVH+Y S  G +++  K
Sbjct: 122 PDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLY-SRYGVLDVAHK 177

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF +M  +D  SW+AMI G+ + G +  A+ +  +M+  GV  D IT+ ++L  C     
Sbjct: 178 VFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDD 237

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +  G  +   + K  ++  V + NALI+M++K G +  A  +F  M  R +VSW S+IA 
Sbjct: 238 VINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              +     A+  F+ M   G+ PD +  V L S  S        R     +     +  
Sbjct: 298 YEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +     +V+M  + G +  AH    ++P   + I W TL++     G
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNG 404



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  +  T   +L  CA   D+  G  +H  VLK     D+ V N L++MY S  G ++ 
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMY-SKFGRLQD 275

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + VFD+M  RD VSW+++I  Y +    + A+  F+ MQ+ G+ PD +T+V++ S  + 
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 125 LGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           L    + + +  F I ++ +++ V + NAL++M+AK G ++ A  +F  +  +  +SW +
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 184 VIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KN 241
           ++ G   +G   EA+  +  M E     P+   +V ++ A SH G + +G +    + KN
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
              +   +    C++D+  + GR+++A     ++P + + + W  +I++    G  + A 
Sbjct: 456 SLYL--DVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIHGRGEEAL 512

Query: 302 SITKRLIG 309
            + K ++ 
Sbjct: 513 QLFKDMLA 520



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 130/273 (47%), Gaps = 16/273 (5%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           ++N  K +H  +L F    +I +   L+++Y +  G I L R  FD + +++  SW+++I
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVT-HGDISLSRSTFDYIHKKNIFSWNSII 92

Query: 85  GGYARLGLSTDAIDLFRQMQISGVC------PDEITMVTVLSACTDLGALEVGKWVESFI 138
             Y R G   +A++   Q+    +C      PD  T   +L AC    +L  GK V   +
Sbjct: 93  SAYVRFGKYHEAMNCVNQL--FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCV 147

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K      V +  +L+ ++++ G +D A K+F  M  + + SW ++I+G   +G    A+
Sbjct: 148 FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGAL 207

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEHYGCMVD 257
            +   M   GV  D +    +L  C+    V  G   +   +K+  G+   +     +++
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH--GLDSDVFVSNALIN 265

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M  + GR+++A     +M +  + + W ++I+A
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/478 (41%), Positives = 303/478 (63%), Gaps = 9/478 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKA-CAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G   N FT   +LK  CA    L   + +H  V+      D  +  +L+  Y +  
Sbjct: 113 MRALGRRGNAFTLAILLKPRCA----LAHARQLHANVVAEGHLRDALLATSLMACYAN-R 167

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ--ISGVCPDEITMVT 117
           G  +  RK+F EM  RD+V+W+ +I   AR   + DA+ LF +M+   SG  PD++T + 
Sbjct: 168 GDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCIL 227

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L ACT LGAL+ G+ V ++ E+      + + N+LI M+++CG VDKA ++F     ++
Sbjct: 228 LLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKS 287

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+W+++I+GLA +G G +A++ FEEM+ + V PD+  F G+LSACSH GLVD+G  +FD
Sbjct: 288 VVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFD 347

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGE 296
            M+ ++G+ P + HYGC+VD++ R+G + EA+E +  +M +  +  IWRTL+ AC   G 
Sbjct: 348 MMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGH 407

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + L E +   LI  +     +YVLL + YA +  W K +++R++M ++G++  PG T +E
Sbjct: 408 VDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVE 467

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
            + E+YEF+  D +H +  EIYE L+E+ ++++ AGYVP  S  L D++ E KE AL  H
Sbjct: 468 HNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSELHDLDSEGKESALTYH 527

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           SEKLAIAFALL TP   PIR+ KNLRVC DCH+ TK  S IYNR ++VRDR RFHHF+
Sbjct: 528 SEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQ 585


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/479 (41%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M + GVSP+  T   +  A A  GD+  G+SVH  +++  +   DI   N +V MY    
Sbjct: 262 MRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLS 321

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTV 118
             IE  +++FD M  RD+VSW+ +I GY + GL+++AI ++  MQ   G+ P + T V+V
Sbjct: 322 K-IEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSV 380

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L A + LGAL+ G  + +   K  +N  V +   +ID++AKCG +D+A+ LF     R+ 
Sbjct: 381 LPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRST 440

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             W +VI+G+ +HG G +A++LF +M + G+ PD V FV LL+ACSH GLVD+GR +F+ 
Sbjct: 441 GPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNM 500

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  +GI P  +HY CMVDM  R+G++ +A +FI+ MPI+ +  IW  L+ AC   G ++
Sbjct: 501 MQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVE 560

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + +  ++ L   +P +   YVL+S++YAK+ +W+   ++R ++ ++ ++K PG + IE+ 
Sbjct: 561 MGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVK 620

Query: 359 NEIYEFVCGDKS--HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
             +  F  G++   H Q +EI   L ++  K++  GYVP  S VL D+ E++KE  LN H
Sbjct: 621 RSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNH 680

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIAF ++ TPP TP+ I KNLRVC DCH+ATK+ISKI  REI+VRD +RFHHFKD
Sbjct: 681 SERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKD 739



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 8/342 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRK 67
           + FT+P +L+A  G G       +H   L+      D      LVH Y    G +    +
Sbjct: 70  DAFTFPPLLRAAQGPGT---AAQLHACALRLGLLRGDAFASGALVHAYLRF-GRVRDAYR 125

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
            FDEM  RD  +W+AM+ G  R   + +A+ LF +M + GV  D +T+ +VL  C  LG 
Sbjct: 126 AFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGD 185

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
             +   +  +  K  ++  + +CNA+ID++ K G +++  K+F  M+ R +V+W S+I+G
Sbjct: 186 RALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISG 245

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
               G+   AV +F  M ++GV PD +  + L SA + CG +  GR     M      + 
Sbjct: 246 HEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG 305

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I     +VDM  +  +++ A      MP+  + + W TLI+     G    A  +   +
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLITGYMQNGLASEAIHVYDHM 364

Query: 308 IGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
             +E +   +  +V +   Y+ L   ++ T++  +  K G+ 
Sbjct: 365 QKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLN 406



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 172/331 (51%), Gaps = 17/331 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV+ +  T   VL  C  +GD  L  ++H   +K    D++ V N ++ +YG   G
Sbjct: 161 MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKL-G 219

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RKVFD MS RD V+W+++I G+ + G    A+++F  M+ SGV PD +T++++ S
Sbjct: 220 MLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLAS 279

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRS--VG---LCNALIDMFAKCGDVDKALKLFRSMNG 175
           A    G +  G+ V  +    MV R   VG     NA++DM+AK   ++ A ++F SM  
Sbjct: 280 AIAQCGDICGGRSVHCY----MVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPV 335

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKG-R 233
           R  VSW ++I G   +G   EA+ +++ M +  G+ P    FV +L A SH G + +G R
Sbjct: 336 RDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR 395

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
            +  S+K   G+   +    C++D+  + G++ EA    ++ P  +    W  +IS    
Sbjct: 396 MHALSIKT--GLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTG-PWNAVISGVGV 452

Query: 294 RGELKLAESITKRLI--GNEPMHESNYVLLS 322
            G    A S+  ++   G  P H +   LL+
Sbjct: 453 HGHGAKALSLFSQMQQEGISPDHVTFVSLLA 483


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 300/475 (63%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  VL+AC G+ +L   + +H  ++K     D+ V++ L+ +Y S   
Sbjct: 146 MFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVY-SKWS 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    VFDEM  RD V W+++IGG+A+     +A++LF++M+ +G   D+ T+ +VL 
Sbjct: 202 DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLR 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G+ V   + K   ++ + L NALIDM+ KCG ++ A   F  M  + ++S
Sbjct: 262 ACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVIS 319

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W++++AGLA +G   +A+ LFE M E+G  P+ +  +G+L ACSH GLV+KG  YF SMK
Sbjct: 320 WSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMK 379

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FG+ P  EHYGC++D+L R+GR+ EA + I +M  E + + WRTL+ AC     + LA
Sbjct: 380 KLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLA 439

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               K++I  EP     Y+LLS+IYA   RWE   ++R+ M  RG++K PG + IE+D +
Sbjct: 440 IYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQ 499

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD SH + +EI + L+++  ++   GYVP T+ VL D+  E KED+L  HSEKL
Sbjct: 500 IHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKL 559

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F L+       +RI KNLR+C DCH   K +S++ +R IV+RD  R+HHF+D
Sbjct: 560 AIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQD 614



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 164/324 (50%), Gaps = 21/324 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +GV  +  TY  ++K C+  G +  GK VH  +    +   + V NTL++MY     
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKF-N 104

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +FDEM ER+ VSW+ MI  Y+   L+  A+     M   GV P+  T  +VL 
Sbjct: 105 LLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLR 163

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L  L   + +   I K  +   V + +ALID+++K  D+D AL +F  M  R +V 
Sbjct: 164 ACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVV 220

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W S+I G A +  G EA+ LF+ M  AG   D      +L AC+   L++ GR+ +   +
Sbjct: 221 WNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVL 280

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC----ARG 295
           K D  +I        ++DM C+ G +++A+    +M +E + I W T+++       +R 
Sbjct: 281 KFDQDLILN----NALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMVAGLAQNGYSRQ 335

Query: 296 ELKLAESITKRLIGNEPMHESNYV 319
            L+L ES+ +   G+ P    NY+
Sbjct: 336 ALELFESMKES--GSRP----NYI 353


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/470 (42%), Positives = 295/470 (62%), Gaps = 7/470 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F+   VL  C  +      + +H  V+      D  +  +LV  Y +C  G +  RKV
Sbjct: 127 NAFSLSIVLGHCRALAH---ARQLHANVVAEGHSPDALLATSLVSSYAACGDG-DSARKV 182

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ--ISGVCPDEITMVTVLSACTDLG 126
           FDEM  RD+++W+ +I  Y R   + DA+ LF  M+   +G  PD++T + +L ACT LG
Sbjct: 183 FDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLG 242

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL+ G+ V  +         + + N+LI M+ KCG VDKA ++F     +++V+W+++I+
Sbjct: 243 ALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMIS 302

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           GLA +G G +A++ FEEM  +GV PD+  F G+LSACSH GLVD+G ++FD M  ++ + 
Sbjct: 303 GLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLK 362

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQK-MPIEANPIIWRTLISACCARGELKLAESITK 305
           P + HYGCMVD++ R+G + +A+E + K M +  +  IWRTL+ AC   G + L E +  
Sbjct: 363 PNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVIN 422

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            LI  +     +YVLL + YA +  W K  ++R++M ++G++  PG T +EL+ EI+EF+
Sbjct: 423 HLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFI 482

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D SH +  EIYE LDE+ + ++ AGYVP  S  L D++ E KE AL  HSEKLAIAFA
Sbjct: 483 AADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFA 542

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LL TP   PIR+ KNLRVC DCH+ TK  S +Y+R ++VRDR RFHHFK+
Sbjct: 543 LLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKE 592



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 8/195 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  P+  T   +L+AC  +G L+ G+ V    +   +G ++ V+N+L+ MY  C G +
Sbjct: 221 ENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKC-GCV 279

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   +VF E  ++  V+WSAMI G A  G   DAI  F +M  SGV PDE T   VLSAC
Sbjct: 280 DKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSAC 339

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL----FRSMNGRT 177
           +  G ++ G K+ +    +  +  +V     ++D+  + G +D+A +L     R     T
Sbjct: 340 SHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDAT 399

Query: 178 IVSWTSVIAGLAMHG 192
           I  W +++    +HG
Sbjct: 400 I--WRTLLGACRIHG 412


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 302/473 (63%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIE 63
           G+ P+  T   +    + + D  + +S+ G V++ ++ D D+ + N LV+MY    G + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL-GYMN 376

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSAC 122
               VFD++  +D++SW+ ++ GY + GL+++AID +  M+      P++ T V+++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + +GAL+ G  + + + K  +   V +   LID++ KCG ++ A+ LF  +   T V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++IA L +HGRG EA+ LF++ML   V  D + FV LLSACSH GLVD+G++ FD M+ +
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+L R+G +++A+E ++ MPI+ +  IW  L+SAC   G  +L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            + RL+  +  +   YVLLS+IYA   +WE   K+R +   RG++K PG + + + ++  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G+++H +  EIY+ L  +  KMK  GYVP  S V  DI E++KE  LN HSE+LAI
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ TPP +PIRI KNLRVC DCH+ATK+IS+I  REIVVRD +RFHHFKD
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKD 789



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 5/288 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +T+P +LKAC  + D   GK VH  V K  F DD+ V  +LVH+Y S  G +++  K
Sbjct: 122 PDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLY-SRYGVLDVAHK 177

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF +M  +D  SW+AMI G+ + G +  A+ +  +M+  GV  D IT+ ++L  C     
Sbjct: 178 VFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDD 237

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +  G  +   + K  ++  V + NALI+M++K G +  A  +F  M  R +VSW S+IA 
Sbjct: 238 VINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              +     A+  F+ M   G+ PD +  V L S  S        R     +     +  
Sbjct: 298 YEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +     +V+M  + G +  AH    ++P   + I W TL++     G
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNG 404



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  +  T   +L  CA   D+  G  +H  VLK     D+ V N L++MY S  G ++ 
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMY-SKFGRLQD 275

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + VFD+M  RD VSW+++I  Y +    + A+  F+ MQ+ G+ PD +T+V++ S  + 
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335

Query: 125 LGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           L    + + +  F I ++ +++ V + NAL++M+AK G ++ A  +F  +  +  +SW +
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 184 VIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKN 241
           ++ G   +G   EA+  +  M E     P+   +V ++ A SH G + +G + +   +KN
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
              +   +    C++D+  + GR+++A     ++P + + + W  +I++    G  + A 
Sbjct: 456 SLYL--DVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS-VPWNAIIASLGIHGRGEEAL 512

Query: 302 SITKRLIG 309
            + K ++ 
Sbjct: 513 QLFKDMLA 520



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 130/273 (47%), Gaps = 16/273 (5%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           ++N  K +H  +L F    +I +   L+++Y +  G I L R  FD + +++  SW+++I
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVT-HGDISLSRSTFDYIHKKNIFSWNSII 92

Query: 85  GGYARLGLSTDAIDLFRQMQISGVC------PDEITMVTVLSACTDLGALEVGKWVESFI 138
             Y R G   +A++   Q+    +C      PD  T   +L AC    +L  GK V   +
Sbjct: 93  SAYVRFGKYHEAMNCVNQL--FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCV 147

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            K      V +  +L+ ++++ G +D A K+F  M  + + SW ++I+G   +G    A+
Sbjct: 148 FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGAL 207

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEHYGCMVD 257
            +   M   GV  D +    +L  C+    V  G   +   +K+  G+   +     +++
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH--GLDSDVFVSNALIN 265

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M  + GR+++A     +M +  + + W ++I+A
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 301/509 (59%), Gaps = 35/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLN--LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           +L  G+ P+ F +  ++KACA +G ++  LGK +H   L   F +D  V+++LV MY   
Sbjct: 100 ILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKF 159

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGV 108
           E   + GR VFD + E  S+SW+AMI GYAR G   +A++LFR+            ISG+
Sbjct: 160 ELP-DYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGL 218

Query: 109 C----------------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
                                   D + + +V+ AC +    E+GK V   +        
Sbjct: 219 VQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESC 278

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + NAL+DM+AKC DV  A  +F  M  + +VSWTS+I G A HG   EA+ L+++M+ 
Sbjct: 279 LFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVL 338

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           AGV P++V FVGL+ ACSH GLV KGR  F SM  DFGI P ++HY C++D+  RSG + 
Sbjct: 339 AGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLD 398

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA   I+ MP++ +   W  L+SAC   G  K+A  I   L+  +P   S+Y+LLS+IYA
Sbjct: 399 EAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYA 458

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
               WE  + +R++M  + +KK+PG + ++L  E   F  G+ S     EI  ++ ++  
Sbjct: 459 GAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDS 518

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           +M++ GYVP TS VLLD+++++KE  L  HSE+LA+A+ LLK  PGT IRIVKNLRVC D
Sbjct: 519 EMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGD 578

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+  K IS I +REI VRD  R+HHFKD
Sbjct: 579 CHTVLKLISAITSREIYVRDVKRYHHFKD 607



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           + K +H  ++K           TL+  YG C G ++   K+FD + ++D V+W+ ++   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKC-GLLKDALKLFDALPQQDHVAWATVLSAC 84

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV--GKWVES------FIE 139
               L   A  +   +   G+ PD     +++ AC +LG++ V  GK + +      F E
Sbjct: 85  NLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFE 144

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
             +V  S      L+DM+AK    D    +F S+   + +SWT++I+G A  GR LEA+ 
Sbjct: 145 DDVVKSS------LVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALE 198

Query: 200 LFEE 203
           LF E
Sbjct: 199 LFRE 202



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 43/203 (21%)

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           + K + + I K  +N        LID + KCG +  ALKLF ++  +  V+W +V++   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---------------------- 227
           +     +A ++   +L  G+ PD   F  L+ AC++ G                      
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 228 ---------------LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
                          L D GR  FDS+     I      +  M+    RSGR  EA E  
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSI-----SWTAMISGYARSGRKLEALELF 200

Query: 273 QKMPIEANPIIWRTLISACCARG 295
           ++ P + N   W  LIS     G
Sbjct: 201 RESPFK-NLYAWTALISGLVQSG 222


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 294/480 (61%), Gaps = 5/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G   + FT   VL   + + DL+ G   H   +K  F  + HV + L+ MY  C  
Sbjct: 232 MVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGA 291

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G+   RKVF+E+   D V W+ MI GY++   LS +A++ FRQMQ +G  PD+ + V  +
Sbjct: 292 GMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAI 351

Query: 120 SACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC++L +   GK   +  ++ ++ +  + + NAL+ M++KCG++  A KLF+ M     
Sbjct: 352 SACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNT 411

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+  S+IAG A HG G E++ LFE+ML A + P  +  V +LSAC+H G V++G++YF+ 
Sbjct: 412 VTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNM 471

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK+ FGI P+ EHY CM+D+L R+G++ EA   I  MP       W  L+ AC   G ++
Sbjct: 472 MKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE    + +  EP +   Y++L+ +Y+   +WE+  +IR++M  RG++K PG + IEL+
Sbjct: 532 LAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELN 591

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL---DINEEDKEDALNK 415
             ++ FV  D SH + KEI+  LDEM  KMK+AGYVP      +   +  E++KE  L  
Sbjct: 592 KRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAH 651

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF LL T  G P+ +VKNLR+C DCH+A KF+S I  R+I VRD +RFH F+D
Sbjct: 652 HSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFED 711



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 155/302 (51%), Gaps = 14/302 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+  + FT+  V+ AC     + L + +H       F   + V+N+L+  Y S  G
Sbjct: 131 MREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYY-SKNG 187

Query: 61  GIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E    VF+ M E  RD VSW++MI  Y +      A+ L+R M   G   D  T+ +V
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDKALKLFRSMNGRT 177
           L+  + +  L  G    +   K   N++  + + LIDM+AKCG  + ++ K+F  + G  
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD 307

Query: 178 IVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           +V W ++I+G + +    +EA+  F +M  AG  PDD +FV  +SACS+     +G+++ 
Sbjct: 308 LVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFH 367

Query: 237 D-SMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
             +MK++   IP  +I     +V M  + G +++A +  Q+MP + N +   ++I+    
Sbjct: 368 ALAMKSE---IPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQ 423

Query: 294 RG 295
            G
Sbjct: 424 HG 425



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 45/321 (14%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC----------------- 58
           +LK+C    DL  GKS+H   LK       ++ N  + +Y  C                 
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 59  -------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
                        E  I +   +FD++ + D VS++ +I  YA  G +  A+ LF +M+ 
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 106 SGVCPDEITMVTVLSACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
            G+  D  T   V++AC +     VG  + + S       +  V + N+L+  ++K G +
Sbjct: 134 MGLVMDGFTFSGVITACCN----HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189

Query: 164 DKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           ++A  +F  M    R  VSW S+I     H RGL+A+AL+ +M+  G   D      +L+
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 222 ACSHCGLVDKGREYF-DSMKNDFGIIPKIEHYGC-MVDMLCRSGR-VKEAHEFIQKMPIE 278
             S    +  G ++   ++K  F    K  H G  ++DM  + G  + E+ +  +++   
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFN---KNRHVGSGLIDMYAKCGAGMSESRKVFEEI-CG 305

Query: 279 ANPIIWRTLISACCARGELKL 299
           ++ ++W T+IS      EL +
Sbjct: 306 SDLVVWNTMISGYSQNKELSV 326


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/417 (46%), Positives = 278/417 (66%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           +G + + +K+FDEM ERD +SW+ M+  Y   G   +A++ F++M+ SG+ PDE T+VT+
Sbjct: 8   DGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTM 67

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSA   L  LE G+ + S I+   +  ++ +  AL+DM+AKCG ++++  LF +M  R +
Sbjct: 68  LSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDV 127

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +W  +I GLA HG G +A+ LFE  L  G+ P +V FVG+L+ACS  GLV +GR YF  
Sbjct: 128 STWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQM 187

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M + +GI P++EHYGCMVD+L R+G V EA + I+ M I  +P++W  ++ AC   G  +
Sbjct: 188 MTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAE 247

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E I  RLI  +P ++ +YV L+ IYA   +WE   ++R +M +R   K+ G +LIE  
Sbjct: 248 LGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEAR 307

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +++ FV G + H QS EI +ML+ +  ++  AGYVP  S VL DI EE+KE+A+  HSE
Sbjct: 308 GKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSE 367

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIAF LL T PG+ IRIVKNLRVC DCH  TK IS+++ REI+VRD  RFHHFK+
Sbjct: 368 RLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKE 424



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+ P++ T   +L A A +  L  G+S+H  +        I +   L+ MY  C G
Sbjct: 52  MRESGLVPDEATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKC-G 110

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +F+ M  RD  +W+ MI G A  GL  DA+ LF +    G+ P  +T V VL+
Sbjct: 111 CIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLN 170

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGL------CNALIDMFAKCGDVDKALKLFRSMN 174
           AC+  G ++ G+    F   QM+  S G+         ++D+  + G V +A+K+  SM 
Sbjct: 171 ACSRAGLVKEGR--HYF---QMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMA 225

Query: 175 -GRTIVSWTSVIAGLAMHG 192
                V W  V+    +HG
Sbjct: 226 ISPDPVLWAMVLCACRIHG 244



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           FA+ G V    KLF  M  R ++SW +++     +G+  EA+  F+ M E+G+ PD+   
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
           V +LSA +   L++ G+    S+ +   +   I     ++DM  + G ++++    + MP
Sbjct: 65  VTMLSASAQLCLLEHGQS-IHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMP 123

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
              +   W  +I    + G  K A ++ +R + NE +H  N   +  + A
Sbjct: 124 -RRDVSTWNVMICGLASHGLGKDALTLFERFL-NEGLHPMNVTFVGVLNA 171


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/477 (40%), Positives = 294/477 (61%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  +  +  F +K+C  +  L  G  +H  +       D  +  +++ +Y  C G
Sbjct: 118 MERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHC-G 176

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVC-PDEITMVTV 118
             E   K+FDE+ ++D V+W+ +I    R   + DA+ LF  MQ  + +C PD++T + +
Sbjct: 177 KPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLL 236

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC DL ALE G+ +  +I++   N    LCN+LI M+++CG +DKA ++F  M  + +
Sbjct: 237 LQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNV 296

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW+++I+GL+M+G G EA+  F EM + GV P D  F  +LSACSHCGLVD+G  +FD 
Sbjct: 297 VSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDR 356

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ +F I P + HYGC+VD+L R+G + +A+E I  M +  +  +WRTL+ AC   G   
Sbjct: 357 MRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGN 416

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E I + LI  +     +YVLL +IY+    W+K T++R++M ++G+   P  T IEL+
Sbjct: 417 LGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELN 476

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             +++F   D SH    +IY+ LDE+ +++K AGY    S  L  +  +DK  AL+ HSE
Sbjct: 477 GVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSE 536

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF +L TPPG  IRI  N+R C DCH+  K+IS +YNR++VVRDR RFHHF++
Sbjct: 537 KLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQE 593



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 4/233 (1%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++FD ++      ++AM+  Y+      + + ++R M+  GV  D ++    + +C  
Sbjct: 80  SRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIK 139

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L  G  + + I          L  +++D+++ CG  ++A KLF  +  + +V+W  +
Sbjct: 140 LLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVL 199

Query: 185 IAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           I+ L  + R  +A+ LFE M        PD V  + LL AC+    ++ G E        
Sbjct: 200 ISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFG-ERIHGYIQQ 258

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            G   +      ++ M  R GR+ +A+E   KM  E N + W  +IS     G
Sbjct: 259 HGYNTESNLCNSLISMYSRCGRMDKAYEVFDKM-TEKNVVSWSAMISGLSMNG 310


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/473 (42%), Positives = 290/473 (61%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIE 63
           G+ P+  T   ++   +  G   L   +H  V+K     +  V   L  +Y  C    ++
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLY--CRFNDMD 374

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             R+ FD M E+   SW+AMI GYA+ GL+  A+ LF+QMQ   V P+ +T+ + LSAC 
Sbjct: 375 SARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACA 434

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGAL +GKWV   I  + +  +V +  ALIDM+ KCG + +A  +F SM+ + +VSW  
Sbjct: 435 QLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNV 494

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+G  +HG+G EA+ L+++M++A + P    F+ +L ACSH GLV +G   F SM +D+
Sbjct: 495 MISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDY 554

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAES 302
           GI P IEH  CMVD+L R+G++KEA E I + P  A  P IW  L+ AC    +  LA+ 
Sbjct: 555 GITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKL 614

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            +++L   EP +   YVLLS++Y    ++ +   +R+    R + K PG TLIE+ +  +
Sbjct: 615 ASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPH 674

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F+ GD++H QS  IY  L+++  KM +AGY P T   L D+ EE+KE  +  HSEKLAI
Sbjct: 675 VFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAI 734

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF LL T PGT IRI+KNLRVC DCH+ATK ISK+  R IVVRD  RFHHF+D
Sbjct: 735 AFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRD 787



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 156/321 (48%), Gaps = 4/321 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T   VL A A + +  +G+ VH    K       HV   L+ +Y  C G +E  
Sbjct: 217 VRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKC-GDMECA 275

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD M   D V+++A+I GY+  G+   +++LF+++   G+ P   T+V ++   +  
Sbjct: 276 RHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPF 335

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   +   + + + K  ++ +  +  AL  ++ +  D+D A + F +M  +T+ SW ++I
Sbjct: 336 GHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMI 395

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A +G    AVALF++M    V P+ +     LSAC+  G +  G+     + N+  +
Sbjct: 396 SGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE-KL 454

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     ++DM  + G + EA      M    N + W  +IS     G+   A  + K
Sbjct: 455 ELNVYVMTALIDMYVKCGSIAEARCIFDSMD-NKNVVSWNVMISGYGLHGQGAEALKLYK 513

Query: 306 RLIGNEPMHESNYVLLSHIYA 326
            ++ +  +H ++   LS +YA
Sbjct: 514 DMM-DAHLHPTSSTFLSVLYA 533



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 178/386 (46%), Gaps = 52/386 (13%)

Query: 7   SPNKFTYPFVLKACA------GIGDLNLG----KSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           SP+ F++ F   + A      GI   +      + +H   +   F  D  V + L  +Y 
Sbjct: 110 SPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITM 115
           +   G +  RKVFD +   D+V W+ ++ G +     ++A++ F +M  +G V PD  T+
Sbjct: 170 TLSRGND-ARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTL 224

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +VL A  ++    +G+ V +F EK  + +   +   LI ++AKCGD++ A  LF  M G
Sbjct: 225 ASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEG 284

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL-----------LSACS 224
             +V++ ++I+G +++G    +V LF+E++  G+ P     V L           L+ C 
Sbjct: 285 PDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCL 344

Query: 225 HCGLVDKGREY-----------------FDSMKNDFGIIPK--IEHYGCMVDMLCRSGRV 265
           H  +V  G +                   DS +  F  +P+  +E +  M+    ++G  
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLT 404

Query: 266 KEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           + A    Q+M    +  NP+   + +SAC   G L L + + K +I NE +  + YV+ +
Sbjct: 405 EMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHK-IIANEKLELNVYVMTA 463

Query: 323 HI--YAKLLRWEKKTKIREVMDKRGM 346
            I  Y K     +   I + MD + +
Sbjct: 464 LIDMYVKCGSIAEARCIFDSMDNKNV 489



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V PN  T    L ACA +G L+LGK VH  +   +   +++V   L+ MY  C G
Sbjct: 414 MQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKC-G 472

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD M  ++ VSW+ MI GY   G   +A+ L++ M  + + P   T ++VL 
Sbjct: 473 SIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLY 532

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF----RSMNG 175
           AC+  G ++ G  V  S      +   +  C  ++D+  + G + +A +L     +S  G
Sbjct: 533 ACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVG 592

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
             I  W +++    +H  G  A    +++ E  + P++  +  LLS
Sbjct: 593 PGI--WGALLGACMVHKDGDLAKLASQKLFE--LEPENTGYYVLLS 634


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 300/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G +PN +T+  +L++C+ + D++LGK VH  ++K     +  V   LV MY     
Sbjct: 282 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK-NR 340

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ + +RD  +W+ ++ GYA+ G    A+  F QMQ  GV P+E T+ + LS
Sbjct: 341 FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLS 400

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ +  L+ G+ + S   K   +  + + +AL+DM+AKCG V+ A  +F  +  R  VS
Sbjct: 401 GCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 460

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG+G +A+  FE ML+ G  PD+V F+G+LSACSH GL+++G+++F+S+ 
Sbjct: 461 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 520

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P IEHY CMVD+L R+G+  E   FI++M + +N +IW T++ AC   G ++  
Sbjct: 521 KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 580

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L   EP  +SNY+LLS+++A    W+  T +R +M  RG+KK PG + +E++ +
Sbjct: 581 ERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQ 640

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+  D SH + +EI+  L ++ +K+   GY P T  VL ++++ +K++ L  HSE+L
Sbjct: 641 VHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERL 700

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL T     IRI KNLR+C DCH   K IS+I N+E+VVRD + FHHFK+
Sbjct: 701 ALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKN 755



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 4/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G  PN +T+  +LK CA  GDLN GK++HG V+K     D H+ N+LV++Y  C G
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC-G 240

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                 KVF E+ ERD VSW+A+I G+   G  +  + +F QM   G  P+  T +++L 
Sbjct: 241 SANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILR 299

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+ L  +++GK V + I K  ++ +  +  AL+DM+AK   ++ A  +F  +  R + +
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 359

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT ++AG A  G+G +AV  F +M   GV P++      LS CS    +D GR+   SM 
Sbjct: 360 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMA 418

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
              G    +     +VDM  + G V++A E +    +  + + W T+I      G+
Sbjct: 419 IKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 473



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 149/339 (43%), Gaps = 38/339 (11%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+F +  ++ A A +GD + G+S+H  V K+ F  DI + N  V MY   +  +E G + 
Sbjct: 89  NQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQS-VENGWQF 147

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F  M   +  S + ++ G+           +  Q+ + G  P+  T +++L  C   G L
Sbjct: 148 FKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             GK +   + K  +N    L N+L++++AKCG  + A K+F  +  R +VSWT++I G 
Sbjct: 208 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G G   + +F +ML  G  P+   F+ +L +CS    VD G                
Sbjct: 268 VAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG---------------- 310

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
                            K+ H  I K  ++ N  +   L+        L+ AE+I  RLI
Sbjct: 311 -----------------KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 353

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
             +      + ++   YA+  + EK  K    M + G+K
Sbjct: 354 KRDLF---AWTVIVAGYAQDGQGEKAVKCFIQMQREGVK 389



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 119/260 (45%), Gaps = 3/260 (1%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           V+K     D H+ ++LV++Y  CE  ++  R+V +EM  +D   W+  +          +
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCE-SLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ LF  M+ + +  ++    +++SA   LG    G+ + + + K      + + NA + 
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ K   V+   + F++M    + S  ++++G        +   +  ++L  G  P+   
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYT 193

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F+ +L  C+  G +++G+     +    GI P    +  +V++  + G    A +   ++
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 276 PIEANPIIWRTLISACCARG 295
           P E + + W  LI+   A G
Sbjct: 253 P-ERDVVSWTALITGFVAEG 271


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/473 (43%), Positives = 288/473 (60%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIE 63
           G  PN  T   V+   +  G   L + +H  V+K +   D  V   L  +Y  C    +E
Sbjct: 308 GWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLY--CRLNDME 365

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             R +FD M E+   SW+AMI GYA+ GL+  A+ LF+ MQ   V P+ IT+ + LSAC 
Sbjct: 366 SARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACA 425

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGAL +GKWV   I K+ +  +V +  ALIDM+AKCG + +A  +F  M+ + +VSW +
Sbjct: 426 HLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNA 485

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+G  +HG+G EA+ L+++ML+A + P    F+ ++ ACSH GLVD+G++ F  M N++
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEY 545

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAES 302
            I P IEH  CMVD+L R+G++ EA E I + P  A  P +W  L+ AC       LA+ 
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKL 605

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            +++L   +  +   YVLLS++Y     + +   +R+    R + K PG TLIE+ +  +
Sbjct: 606 ASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPH 665

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F+ GD  H QS+ IY  L+ +  KM +AGY P T   L D+ EE+KE  +  HSEKLAI
Sbjct: 666 VFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAI 725

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF LL T PGT IRI+KNLRVC DCH+ATKFISK+  R IVVRD  RFHHF+D
Sbjct: 726 AFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRD 778



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 160/321 (49%), Gaps = 4/321 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T    L+A A    + +G+ VHG  +K    +  HV   L+ +Y  C G ++  
Sbjct: 208 VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKC-GDMDSA 266

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +FD M   D V+++A+I GY+  G+   +++LF+++  SG  P+  T+V V+   +  
Sbjct: 267 QFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPF 326

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   + + + +F+ K  ++    +  AL  ++ +  D++ A  +F +M  +T+ SW ++I
Sbjct: 327 GHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMI 386

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A +G    AVALF+ M E  V P+ +     LSAC+H G +  G+ +   + +   +
Sbjct: 387 SGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGK-WVHRIISKEKL 445

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     ++DM  + G + EA     +M    N + W  +IS     G+   A  + K
Sbjct: 446 ELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGYGLHGQGAEALKLYK 504

Query: 306 RLIGNEPMHESNYVLLSHIYA 326
            ++    +  S+   LS IYA
Sbjct: 505 DMLDARILPTSS-TFLSVIYA 524



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 173/386 (44%), Gaps = 57/386 (14%)

Query: 7   SPNKFTYPFVLKACAGI-----GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           SP+ F++ F   + +        D    +++HG  +   +  D  V + L  +Y     G
Sbjct: 106 SPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRG 165

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLS 120
            +  RKVFD +   D++ W+ ++ G       ++A++ F +M  +G V PD  T+ + L 
Sbjct: 166 DD-ARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLR 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +   + +G+ V  +  K  +     +   L+ +++KCGD+D A  LF  M+   +V+
Sbjct: 221 AAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVA 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG-----------LLSACSHCGLV 229
           + ++I+G +++G    +V LF+E+  +G  P+    V            LL+ C H  +V
Sbjct: 281 YNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVV 340

Query: 230 ------------------------DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                                   +  R  FD+M     +   +E +  M+    ++G  
Sbjct: 341 KARLDADALVSTALTTLYCRLNDMESARSIFDAM-----LEKTMESWNAMISGYAQNGLT 395

Query: 266 KEA---HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           + A    + +Q++ ++ NPI   + +SAC   G L L + +  R+I  E +  + YV+ +
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWV-HRIISKEKLELNVYVMTA 454

Query: 323 HI--YAKLLRWEKKTKIREVMDKRGM 346
            I  YAK     +   I + MD + +
Sbjct: 455 LIDMYAKCGSIAEARSIFDRMDNKNV 480



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V PN  T    L ACA +G L+LGK VH  + K +   +++V   L+ MY  C G
Sbjct: 405 MQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKC-G 463

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD M  ++ VSW+AMI GY   G   +A+ L++ M  + + P   T ++V+ 
Sbjct: 464 SIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIY 523

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G ++ G+ V   +  +  +   +  C  ++D+  + G +++AL+L        I 
Sbjct: 524 ACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIG 583

Query: 180 S--WTSVIAGLAMH 191
              W +++    +H
Sbjct: 584 PGVWGALLGACMVH 597


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/507 (42%), Positives = 290/507 (57%), Gaps = 55/507 (10%)

Query: 8   PNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           P+ F++ F LK  A  G     G  +H    +  F D I V  TL+ MY  C G  E  R
Sbjct: 110 PDSFSFAFTLKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAEC-GCYEYAR 168

Query: 67  KVFDEMSE--------------------------------------RDSVSWSAMIGGYA 88
           KVFDEMS+                                      RD  SWS MI G+A
Sbjct: 169 KVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFA 228

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   DA   F+++      P E+++  VLSAC   GA E GK +  F+EK      V 
Sbjct: 229 KSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVS 288

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + NALID ++KCG+VD A  +F                 LAMHGR  EA+ +F EM E+G
Sbjct: 289 VNNALIDTYSKCGNVDMAKLVFN--------------ISLAMHGRADEAIRVFHEMEESG 334

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD V F+ LL ACSH GLV++G   F  M+N +GI P IEHYGCMVD+  R+ R+++A
Sbjct: 335 VRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKA 394

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           +EFI++MPI  N IIWRTL+ AC   G ++LAE +  RL   +P +  ++VLLS++YA  
Sbjct: 395 YEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVA 454

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE-MGRK 387
            +W+    IR  M ++ MKKIPG ++IE+D   Y FV G+K +  +KE ++ L E M R 
Sbjct: 455 GKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRL 514

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
            ++ GY P    VL D+ EE+KED+++KHSEKLA AF + K P G  +RIVKNLRVC DC
Sbjct: 515 REEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDC 574

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFK 474
           H+  K ISK+Y  EI+VRDR RFH FK
Sbjct: 575 HTVMKLISKVYQVEIIVRDRSRFHSFK 601


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 301/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P++FT   VL+ CAG+  L  G+ VH  +LK  F     V ++L HMY    G
Sbjct: 185 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK-SG 243

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G K+   M  R  V+W+ +I G A+ G   + ++ +  M+++G  PD+IT V+VLS
Sbjct: 244 SLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLS 303

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC++L  L  G+ + + + K   +  + + ++LI M+++ G ++ ++K F       +V 
Sbjct: 304 ACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVL 363

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+S+IA    HGRG EA+ LF +M +  +  ++V F+ LL ACSH GL +KG EYFD M 
Sbjct: 364 WSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMV 423

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + + P+IEHY C+VD+L R+GR++EA   I+ MP++ + IIW+TL++AC    E ++A
Sbjct: 424 KKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMA 483

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I++ +I  +P+  ++YVLLS+I+A    W   ++IR+ M  R ++K PG + +EL N 
Sbjct: 484 ERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNL 543

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GDKSH Q  EI   L E+  ++K+ GYVP    VL D++ E+KE  L  HSEK 
Sbjct: 544 VHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKF 603

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFAL+ T    PIR++KNLRVC+DCH+A K IS+I NREI+VRD  RFHHFKD
Sbjct: 604 AIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKD 658



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 151/314 (48%), Gaps = 36/314 (11%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-------- 59
           P+ F++  +L++C  +G L  GK VH  ++      D  + N L++ Y            
Sbjct: 62  PSLFSH--LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVL 119

Query: 60  ----------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
                                 G +E  +K+FDEMSER+  +W+AMI G  +   +  A+
Sbjct: 120 FSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 179

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
            LF++M   G  PDE T+ +VL  C  L +L  G+ V + + K     S  + ++L  M+
Sbjct: 180 SLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 239

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
            K G +    KL +SM  RT+V+W ++IAG A +G   E +  +  M  AG  PD + FV
Sbjct: 240 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 299

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA-HEFIQKMP 276
            +LSACS    + +G++    +    G    +     ++ M  RSG ++++   F+ +  
Sbjct: 300 SVLSACSELATLGQGQQIHAEVIKA-GASSVLAVVSSLISMYSRSGCLEDSIKAFVDREN 358

Query: 277 IEANPIIWRTLISA 290
            +   ++W ++I+A
Sbjct: 359 FDV--VLWSSMIAA 370



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 42/253 (16%)

Query: 78  VSWSAMIGGYARL---GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +S SA +  +  L   G    A D F     S +  D      +L +C  LG+L  GK V
Sbjct: 29  ISSSASLQEFTSLCNDGRIKQAYDTF----TSEIWSDPSLFSHLLQSCIKLGSLFGGKQV 84

Query: 135 ES-----------FIEKQMVN--------------------RSVGLCNALIDMFAKCGDV 163
            S           FI   ++N                    R+V   N LI+ + + GD+
Sbjct: 85  HSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDL 144

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A KLF  M+ R I +W ++IAGL       +A++LF+EM   G  PD+     +L  C
Sbjct: 145 ESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGC 204

Query: 224 SHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           +    +  G+E     +K  F +   +     +  M  +SG + +  + I+ MPI    +
Sbjct: 205 AGLRSLLAGQEVHACLLKCGFELSSVVG--SSLAHMYIKSGSLSDGEKLIKSMPIRT-VV 261

Query: 283 IWRTLISACCARG 295
            W TLI+     G
Sbjct: 262 AWNTLIAGKAQNG 274


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 303/510 (59%), Gaps = 40/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---FQFGDDIHVQNTLVHMYGS 57
           M+  G+  ++FTYP V++ACA    L LGK VH  VL+   F F    H  N+LV +Y  
Sbjct: 277 MVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSF----HFDNSLVTLYYK 332

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGY------------------------------ 87
           C G     R +F++M  +D VSW+A++ GY                              
Sbjct: 333 C-GKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISG 391

Query: 88  -ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
            A  G   + + LF  M+  G  P +      + +C  LGA   G+   + + K   + S
Sbjct: 392 LAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSS 451

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           +   NALI M+AKCG V++A ++FR+M     VSW ++IA L  HG G+EAV ++EEML+
Sbjct: 452 LSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLK 511

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            G+ PD + F+ +L+ACSH GLVD+GR+YF+SM+  + I P  +HY  ++D+LCRSG+  
Sbjct: 512 KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFS 571

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA   I+ +P +    IW  L+S C   G ++L      +L G  P H+  Y+LLS++YA
Sbjct: 572 EAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYA 631

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +WE+  ++R++M  RG+KK    + IE++ +++ F+  D SH +++ +Y+ L ++G+
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGK 691

Query: 387 KMKKAGYVPTTSEVLLDINEE-DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
           +M++ GYVP TS VL D+  +  KED L  HSEK+A+AF L+K PPGT IRI KNLR C 
Sbjct: 692 EMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+  +F+SK+  R+I++RDR RFHHF++
Sbjct: 752 DCHNFFRFLSKVVQRDIILRDRKRFHHFRN 781



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 151/358 (42%), Gaps = 70/358 (19%)

Query: 5   GVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G  P+ FTY  VL   A  + D       H A LK   G    V N LV +Y  C     
Sbjct: 143 GFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPS 202

Query: 64  L---GRKVFDEMSERDSVSWS--------------------------------AMIGGYA 88
           L    RKVFD++ E+D  SW+                                AMI GY 
Sbjct: 203 LLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYV 262

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             GL  +A+++ R+M  SG+  DE T  +V+ AC +   L++GK V +++ ++  + S  
Sbjct: 263 NCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFH 321

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------------ 184
             N+L+ ++ KCG  ++A  +F  M  + +VSW ++                        
Sbjct: 322 FDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 185 -------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
                  I+GLA +G G E + LF  M   G  P D AF G + +C+  G    G++ F 
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-FH 440

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +     G    +     ++ M  + G V+EA +  + MP   + + W  LI+A    G
Sbjct: 441 AQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQHG 497



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 96/363 (26%)

Query: 26  LNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-----------------------------G 56
           L L ++VHG ++ F F    H+ N L+ +Y                             G
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 57  SCEGG-IELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
            C  G I L R VF+E  +S RD+V ++AMI G++       AI+LF +M+  G  PD+ 
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 114 TMVTVLSA----------CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD- 162
           T  +VL+           C    A  +         K        + NAL+ ++++C   
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAAL---------KSGAGYVTSVSNALVSVYSRCASS 200

Query: 163 ---VDKALKLFRSMNGRTIVSWTSVIAGLAMHG---------RGL--------------- 195
              +  A K+F  +  +   SWT+++ G   +G         +G+               
Sbjct: 201 PSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISG 260

Query: 196 --------EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY--FDSMKNDFGI 245
                   EA+ +   M+ +G+  D+  +  ++ AC++  L+  G++   +   + DF  
Sbjct: 261 YVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSF 320

Query: 246 IPKIEHY-GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                H+   +V +  + G+  EA    +KMP + + + W  L+S   + G +  A+ I 
Sbjct: 321 -----HFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIF 374

Query: 305 KRL 307
           K +
Sbjct: 375 KEM 377


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 291/476 (61%), Gaps = 4/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G   ++ T   V  A   +GD  +  SVHG  +   F  D+ V N++V MY  C G
Sbjct: 224 MQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKC-G 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VFD M ER+ +SW++M+ GY + G  TDA+ LF QMQ S   P+ +T + ++S
Sbjct: 283 NVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 342

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRTI 178
           AC+ LG+  +G+ + +F+    ++    L NA++DM+ KCGD+D A+++F +  +  R +
Sbjct: 343 ACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDV 402

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW  +I+G  +HG G EA+ LF  M   GV P+D+ F  +LSACSH GL+D+GR+ F  
Sbjct: 403 SSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD 462

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M     + P+++HY CMVDML R+G + EA   I+K+P   +  +W  L+ AC   G  +
Sbjct: 463 M-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTE 521

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E     L   EP H   YVL+S+IYA   +W++   +R+ M  RG+KK    ++IE  
Sbjct: 522 LGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFG 581

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            E++ F   D+S    +E+Y  ++ +  +MK  GYVP  S VL D+  EDKE  LN HSE
Sbjct: 582 TEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSE 641

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF ++K   G PI++ KNLRVC+DCH A KFIS IY R+I+VRD +RFHHF+
Sbjct: 642 KLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQ 697



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 159/318 (50%), Gaps = 11/318 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N FTYPFVLK CA       G+ VHG V++  FG D+ V+  LV MY  C G
Sbjct: 123 MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC-G 181

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    +VFD M  RD V W+AMI  Y +      A+ LFR+MQ  G   DEIT ++V S
Sbjct: 182 EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVAS 241

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   LG   +   V  +         V + N+++ M+AKCG+V++A  +F  M  R  +S
Sbjct: 242 AVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGIS 301

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFD 237
           W S+++G   +GR  +A++LF +M  +   P+ V  + ++SACS+ G    GR+   +  
Sbjct: 302 WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI 361

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI-EANPIIWRTLISACCARGE 296
           S K D     +      ++DM  + G +  A E      + E +   W  LIS     G 
Sbjct: 362 SSKMDIDTTLR----NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGH 417

Query: 297 LKLAESITKRLI--GNEP 312
            K A  +  R+   G EP
Sbjct: 418 GKEALELFSRMQVEGVEP 435



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 58/347 (16%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           Y  +L+ C  +  L L   +H ++    F     H    L+ +Y    G +   R +FD 
Sbjct: 28  YDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKL-GDLHSARTLFDH 83

Query: 72  MSER--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC- 122
                       +S   + M+  YA  G S +AIDL+  MQ  GV  +  T   VL  C 
Sbjct: 84  RHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA 143

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           ++LGA+  G+ V   + +      + +  AL+DM+AKCG++  A ++F  M  R +V WT
Sbjct: 144 SELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWT 202

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----------------- 225
           ++I       R L+A+ LF +M E G   D++  + + SA                    
Sbjct: 203 AMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLN 262

Query: 226 ------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
                             CG V++ R  FD M+   GI      +  M+    ++GR  +
Sbjct: 263 GFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI-----SWNSMLSGYTQNGRPTD 317

Query: 268 AHEFIQKMPI---EANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           A     +M     + NP+    ++SAC   G   L   +   +I ++
Sbjct: 318 ALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 364


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/504 (41%), Positives = 295/504 (58%), Gaps = 35/504 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +SP++FT   VL ACA +  L +G+ +H  ++   F     V N L+ MY  C GG+E  
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRC-GGVETA 333

Query: 66  RK---------------------------------VFDEMSERDSVSWSAMIGGYARLGL 92
           R+                                 +FD + +RD V+W+AMI GY + GL
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL 393

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             +AI+LFR M      P+  T+  +LS  + L +L  GK +     K     SV + NA
Sbjct: 394 YGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNA 453

Query: 153 LIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           LI M+AK G +  A + F  +   R  VSWTS+I  LA HG   EA+ LFE ML  G+ P
Sbjct: 454 LITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           D + +VG+ SAC+H GLV++GR+YFD MK+   IIP + HY CMVD+  R+G ++EA EF
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I+KMPIE + + W +L+SAC     + L +   +RL+  EP +   Y  L+++Y+   +W
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E+  KIR+ M    +KK  G + IE+ ++++ F   D  H Q  EIY  + ++  ++KK 
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKM 693

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP T+ VL D+ EE KE  L  HSEKLAIAF L+ TP  T +RI+KNLRVCNDCH+A 
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           KFISK+  REI+VRD  RFHHFKD
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKD 777



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 67/380 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M+  G+ P++FT   VL + A    L  GK VH  ++K     ++ V N+L++MY  C  
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L    F++M+ERD V+W++MI GY + 
Sbjct: 197 PMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR 256

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G    A+D+F +M + S + PD  T+ +VLSAC +L  L +G+ + S I     + S  +
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV 316

Query: 150 CNALIDMFAKCGDVDKALKL---------------------------------FRSMNGR 176
            NALI M+++CG V+ A +L                                 F S+  R
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR 376

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +V+WT++I G   HG   EA+ LF  M+     P+      +LS  S    +  G++  
Sbjct: 377 DVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIH 436

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S     G I  +     ++ M  ++G +  A      +  E + + W ++I A    G 
Sbjct: 437 GSAVKS-GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 297 LKLAESITKRLI--GNEPMH 314
            + A  + + ++  G  P H
Sbjct: 496 AEEALELFETMLMEGLRPDH 515



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 34/258 (13%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  Y    G ++   + FD + +RDSVSW+ MI GY  +G    AI +  +M   G+
Sbjct: 84  NTVLSAYAK-RGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGI 142

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD------ 162
            P + T+  VL++      LE GK V SFI K  +  +V + N+L++M+AKCGD      
Sbjct: 143 EPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKV 202

Query: 163 -------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
                                    +D A+  F  M  R IV+W S+I+G    G  L A
Sbjct: 203 VFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRA 262

Query: 198 VALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           + +F +ML ++ + PD      +LSAC++   +  G +    +      I  I     ++
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV-LNALI 321

Query: 257 DMLCRSGRVKEAHEFIQK 274
            M  R G V+ A   I++
Sbjct: 322 SMYSRCGGVETARRLIEQ 339



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 2/160 (1%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           +M  R+    N ++  +AK GD+D + + F  +  R  VSWT++I G    G+  +A+ +
Sbjct: 74  EMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRI 133

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
             EM+  G+ P       +L++ +    ++ G++   S     G+   +     +++M  
Sbjct: 134 MGEMMREGIEPSQFTLTNVLASVAATRCLETGKK-VHSFIVKLGLRGNVSVSNSLLNMYA 192

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + G    A     +M ++ +   W  +I+     G++ LA
Sbjct: 193 KCGDPMMAKVVFDRMVVK-DISSWNAMIALHMQVGQMDLA 231



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 22/214 (10%)

Query: 109 CPDEITMVTVLSACTDLGALEV----GKWVESFIEKQMVNR----SVGLCNALIDMFAKC 160
            P  +++ T+L  CT+L    V    G++    +  +++      SV L N L+++++K 
Sbjct: 3   APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKT 62

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G    A KLF  M  RT  SW +V++  A  G    +   F+ + +     D V++  ++
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQ----RDSVSWTTMI 118

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV------KEAHEFIQK 274
               + G   K       M  + GI P       + ++L            K+ H FI K
Sbjct: 119 VGYKNIGQYHKAIRIMGEMMRE-GIEPS---QFTLTNVLASVAATRCLETGKKVHSFIVK 174

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           + +  N  +  +L++     G+  +A+ +  R++
Sbjct: 175 LGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMV 208


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/487 (40%), Positives = 298/487 (61%), Gaps = 13/487 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVH 53
           ML  G+ PN+ T   VL  CA +G L  GK +H   +K+         GD+  V N L+ 
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415

Query: 54  MYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVC 109
           MY  C+  ++  R +FD +S  ERD V+W+ MIGGY++ G +  A++L  +M  +     
Sbjct: 416 MYAKCKK-VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALK 168
           P+  T+   L AC  L AL +GK + ++  +   N   + + N LIDM+AKCG +  A  
Sbjct: 475 PNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARL 534

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  +  V+WTS++ G  MHG G EA+ +F+EM   G   D V  + +L ACSH G+
Sbjct: 535 VFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +D+G EYF+ MK  FG+ P  EHY C+VD+L R+GR+  A   I++MP+E  P++W   +
Sbjct: 595 IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFL 654

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           S C   G+++L E   +++      H+ +Y LLS++YA   RW+  T+IR +M  +G+KK
Sbjct: 655 SCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKK 714

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
            PG + +E       F  GDK+H  +KEIY++L +  +++K  GYVP T   L D+++E+
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           K+D L +HSEKLA+A+ +L TP G  IRI KNLRVC DCH+A  ++S+I + +I++RD  
Sbjct: 775 KDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSS 834

Query: 469 RFHHFKD 475
           RFHHFK+
Sbjct: 835 RFHHFKN 841



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 48/339 (14%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P+ +T+PFV KAC  I  +  G+S H   L   F  ++ V N LV MY  C   +   R
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS-LSDAR 182

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDL 125
           KVFDEMS  D VSW+++I  YA+LG    A+++F +M     C PD IT+V VL  C  L
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASL 242

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   +GK +  F     + +++ + N L+DM+AKCG +D+A  +F +M+ + +VSW +++
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302

Query: 186 AGLAMHGRGLEAVALFE-----------------------------------EMLEAGVP 210
           AG +  GR  +AV LFE                                   +ML +G+ 
Sbjct: 303 AGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362

Query: 211 PDDVAFVGLLSACSHCGLVDKGREY--------FDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           P++V  + +LS C+  G +  G+E          D  KN  G    + +   ++DM  + 
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQ--LIDMYAKC 420

Query: 263 GRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLA 300
            +V  A      + P E + + W  +I      G+   A
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 50/335 (14%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E+G  P+  T   VL  CA +G  +LGK +H   +  +   ++ V N LV MY  C G +
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC-GMM 280

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF---------------------- 100
           +    VF  MS +D VSW+AM+ GY+++G   DA+ LF                      
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 101 -------------RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN-RS 146
                        RQM  SG+ P+E+T+++VLS C  +GAL  GK +  +  K  ++ R 
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400

Query: 147 VG------LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAV 198
            G      + N LIDM+AKC  VD A  +F S++   R +V+WT +I G + HG   +A+
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 199 ALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCM 255
            L  EM E      P+       L AC+    +  G++ +  +++N    +P      C+
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCL 519

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +DM  + G + +A      M +  N + W +L++ 
Sbjct: 520 IDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTG 553



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 17/310 (5%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCEG 60
           +  S  + T PF+ K C  I  + L   +H  +L F     +++ + L+  Y   G    
Sbjct: 23  FSTSAPEITPPFIHK-CKTISQVKL---IHQKLLSFGI-LTLNLTSHLISTYISVGCLSH 77

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L R+     S+     W+++I  Y   G +   + LF  M      PD  T   V  
Sbjct: 78  AVSLLRRF--PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFK 135

Query: 121 ACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           AC ++ ++  G+     S +   + N  VG  NAL+ M+++C  +  A K+F  M+   +
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVG--NALVAMYSRCRSLSDARKVFDEMSVWDV 193

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           VSW S+I   A  G+   A+ +F  M  E G  PD++  V +L  C+  G    G++   
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ-LH 252

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
                  +I  +    C+VDM  + G + EA+     M ++ + + W  +++     G  
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRF 311

Query: 298 KLAESITKRL 307
           + A  + +++
Sbjct: 312 EDAVRLFEKM 321


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/509 (41%), Positives = 295/509 (57%), Gaps = 35/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNL--GKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           +L  G  P+ F +  ++KACA +G L++  GK VH       F DD  V+++L+ MY   
Sbjct: 95  LLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKF 154

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGV 108
            G  + GR VFD +S  +S+SW+ MI GYAR G   +A  LFRQ            ISG+
Sbjct: 155 -GLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGL 213

Query: 109 C----------------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
                                   D + + +V+ AC +L   E+GK +   +        
Sbjct: 214 VQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESC 273

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + NALIDM+AKC D+  A  +F  M  + +VSWTS+I G A HG+  EA+AL++EM+ 
Sbjct: 274 LFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVL 333

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
           AGV P++V FVGL+ ACSH GLV KGR  F +M  D GI P ++HY C++D+  RSG + 
Sbjct: 334 AGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLD 393

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA   I+ MP+  +   W  L+S+C   G  ++A  I   L+  +P   S+Y+LLS+IYA
Sbjct: 394 EAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYA 453

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
               WE  +K+R++M     KK PG + I+L    + F  G+ SH    EI  ++ E+  
Sbjct: 454 GAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDE 513

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           +M+K GY P TS VL D+++++KE  L  HSE+LA+A+ LLK  PGT IRIVKNLRVC D
Sbjct: 514 EMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGD 573

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+  K IS I NREI VRD  R+HHFKD
Sbjct: 574 CHTVLKLISAITNREIYVRDAKRYHHFKD 602



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 161/363 (44%), Gaps = 55/363 (15%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           L K +H  ++K        + NTL++ YG C G I+   ++FD +  RD V+W++++   
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKC-GLIQDALQLFDALPRRDPVAWASLLTAC 79

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV--GKWVESFIEKQMVNR 145
                   A+ + R +  +G  PD     +++ AC +LG L V  GK V +       + 
Sbjct: 80  NLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSD 139

Query: 146 SVGLCNALIDMFAKCGDVD-------------------------------KALKLFRSMN 174
              + ++LIDM+AK G  D                               +A +LFR   
Sbjct: 140 DDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGR 233
            R + +WT++I+GL   G G++A  LF EM   G+   D +    ++ AC++  L + G+
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259

Query: 234 EYFDSMKNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           +         G++  + +  C      ++DM  +   +  A     +M    + + W ++
Sbjct: 260 QM-------HGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEM-CRKDVVSWTSI 311

Query: 288 ISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHI--YAKLLRWEKKTKIREVMDK 343
           I      G+ + A ++   ++  G +P +E  +V L H   +A L+  + +T  R +++ 
Sbjct: 312 IVGTAQHGQAEEALALYDEMVLAGVKP-NEVTFVGLIHACSHAGLVS-KGRTLFRTMVED 369

Query: 344 RGM 346
            G+
Sbjct: 370 HGI 372


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 297/471 (63%), Gaps = 5/471 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +T+ F+LKAC    +    + VHG +++F +  D+ +   L+  Y    G IE   K
Sbjct: 499 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG-NGLIETAHK 557

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+EM  RD VSW++MI  Y + GL  +A+ ++ QM+IS V  D  T+V++LS+C  +GA
Sbjct: 558 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 617

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +G  +  F  ++ +  ++ + NALIDM+AKCG +  AL +F SM  R + +W S+I G
Sbjct: 618 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 677

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
             +HGRG EA+  F  ML AGV P+ + F+GLL  CSH GLV +G +YF  M ++F + P
Sbjct: 678 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 737

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+HYGCMVD+  R+G++KEA E I+  P + +P++WRTL+ +C     +++ E   + L
Sbjct: 738 GIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNL 797

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +    +   + VLLS IYA+    +   ++R+++  RG+K  PG + IE+ ++++ FV  
Sbjct: 798 VQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVD 857

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL----DINEEDKEDALNKHSEKLAIA 423
           DKSH  S+EIY  L+E+  +    GY    S ++     +  E   E + + HSEKLAIA
Sbjct: 858 DKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIA 917

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           + L +TP GT + IVKNLRVC DCH+ TKF+SK ++REI+VRDR RFHHF+
Sbjct: 918 YGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFR 968


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 291/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN FT   +LKA      L+ G  +H   LK+ +   ++V + LV MY  C G
Sbjct: 180 MLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARC-G 238

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +  FD M  +  VSW+A+I G+AR G    A+ L  +MQ     P   T  +VLS
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS 298

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +GALE GKWV + + K  +     + N L+DM+AK G +D A ++F  +    +VS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G A HG G E +  FE+ML  G+ P++++F+ +L+ACSH GL+D+G  YF+ MK
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + + P + HY   VD+L R G +  A  FI++MPIE    +W  L+ AC     ++L 
Sbjct: 419 K-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELG 477

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +R    +P      +LLS+IYA   RW    K+R++M + G+KK P  + +E++N 
Sbjct: 478 VYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENA 537

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D++H + KEI    +E+  K+K+ GYVP TS VLL ++++++E+ L  HSEKL
Sbjct: 538 VHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKL 597

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL TP G+PIRI KN+RVC DCH+A KF+SK+ +REI+VRD +RFH F+D
Sbjct: 598 ALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRD 652



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 156/290 (53%), Gaps = 6/290 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGR 66
           P+   Y  +LK C  +G +  G+ VH  ++   F D+ + +QN +V+MY  C G ++  R
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC-GCLDDAR 143

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FDEM  +D V+W+A+I G+++     DA+ LF QM   G  P+  T+ ++L A     
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEH 203

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L+ G  + +F  K     SV + +AL+DM+A+CG +D A   F  M  ++ VSW ++I+
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
           G A  G G  A+ L  +M      P    +  +LSAC+  G +++G+     M K+   +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           I  I +   ++DM  ++G + +A     ++ ++ + + W T+++ C   G
Sbjct: 324 IAFIGN--TLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHG 370



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 11/267 (4%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES-FIEKQMVNRSVGLCNALI 154
           A+DL   +Q   + PD      +L  CT LG +E G+ V +  ++   ++  + L N ++
Sbjct: 74  ALDL---IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           +M+AKCG +D A ++F  M  + +V+WT++IAG + + R  +A+ LF +ML  G  P+  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
               LL A      +D G +   +    +G    +     +VDM  R G +  A      
Sbjct: 191 TLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EPMHESNYVLLSHIYAKLLRWE 332
           MP ++  + W  LIS    +GE + A  +  ++     +P H +   +LS   A +   E
Sbjct: 250 MPTKSE-VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSAC-ASIGALE 307

Query: 333 KKTKIREVMDKRGMKKIP--GSTLIEL 357
           +   +   M K G+K I   G+TL+++
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDM 334


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 297/476 (62%), Gaps = 5/476 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M++ G  PN+ T+  +L A +    L LG  +H  +LK+   DD  ++N L+  YG CE 
Sbjct: 650  MMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQ 709

Query: 61   GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +E    +F  MSER D VSW++MI GY   G+   A+DL   M   G   D  T  TVL
Sbjct: 710  -MEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVL 768

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            SAC  +  LE G  V +   +  +   V + +AL+DM+AKCG +D A + F  M  R I 
Sbjct: 769  SACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIY 828

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            SW S+I+G A HG G +A+ +F  M + G  PD V FVG+LSACSH GLVD+G ++F SM
Sbjct: 829  SWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSM 888

Query: 240  KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC-ARG-EL 297
               +G+ P+IEH+ CMVD+L R+G VK+  +FI+ MP++ N +IWRT++ ACC A G   
Sbjct: 889  GEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNT 948

Query: 298  KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            +L +   K LI  EP +  NYVLLS+++A    WE   + R  M K  +KK  G + + +
Sbjct: 949  ELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNM 1008

Query: 358  DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
             + ++ FV GD++H + ++IYE L E+  K++ AGYVP T   L D+  E+KE+ L+ HS
Sbjct: 1009 KDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHS 1068

Query: 418  EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            EKLAIAF L +     PIRI+KNLRVC DCH+A K+ISKI  R+I++RD +RFHHF
Sbjct: 1069 EKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHF 1123



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 7/326 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ F+    L +C+ +G L LG+ +HG   K+    D+ V N L+ +Y   + 
Sbjct: 548 MKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETD- 606

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQMQISGVCPDEITMVTVL 119
            I   +KVF +M E D VSW++ IG  A+   S   A+  F +M  +G  P+ +T + +L
Sbjct: 607 SINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINIL 666

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI- 178
           +A +    L +G  + + I K  V     + NAL+  + KC  ++    +F  M+ R   
Sbjct: 667 AAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDE 726

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S+I+G    G   +A+ L   M++ G   D   F  +LSAC+    +++G E   +
Sbjct: 727 VSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGME-VHA 785

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
                 +   +     +VDM  + G++  A  F + MP+  N   W ++IS     G  +
Sbjct: 786 CAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGHGQ 844

Query: 299 LAESITKRLI--GNEPMHESNYVLLS 322
            A  I  R+   G  P H +   +LS
Sbjct: 845 KALKIFTRMKQHGQSPDHVTFVGVLS 870



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 14/302 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ++  G+ PN F     L+AC   G   + LG  +H  + K     D+ + N L+ MY  C
Sbjct: 232 VISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDC 291

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV----CPDEIT 114
            G I+   +VFDE+  R+SV+W+++I  Y R G +  A  LF  MQ+ GV     P+E T
Sbjct: 292 SGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYT 351

Query: 115 MVTVLSACTDLG--ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           + ++++A   L    L + + + + IEK    R + + +AL++ FA+ G +D A  +F+ 
Sbjct: 352 LCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQ 411

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD-- 230
           M  R  V+   ++ GLA   +G EA  +F+EM +  V  +  + V LLS  +    +   
Sbjct: 412 MYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEG 470

Query: 231 --KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             KG+E    +     +  +I     +V+M  +   +  A    Q MP   + + W ++I
Sbjct: 471 KRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMP-SKDTVSWNSMI 529

Query: 289 SA 290
           S 
Sbjct: 530 SG 531



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 29  GKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           G+ VH  + +    D  I + N LV+MYG C   I+    VF  M  +D+VSW++MI G 
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTA-IDNACSVFQLMPSKDTVSWNSMISGL 532

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
                  +A+  F  M+ +G+ P   ++++ LS+C+ LG L +G+ +     K  ++  V
Sbjct: 533 DHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDV 592

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLE 206
            + NAL+ ++A+   +++  K+F  M     VSW S I  LA +    L+A+  F EM++
Sbjct: 593 SVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ 652

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           AG  P+ V F+ +L+A S   ++  G +
Sbjct: 653 AGWRPNRVTFINILAAVSSFSVLGLGHQ 680



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  + K  F DD+   NTL+++Y    G +   RK+FDEM +++ VSWS +I GY +  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRI-GNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA--LEVGKWVESFIEKQMVNRSVGL 149
           +  +A  LF+ +  SG+ P+   + + L AC   G+  +++G  + +FI K      + L
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMIL 280

Query: 150 CNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
            N L+ M++ C G +D A ++F  +  R  V+W S+I+     G  + A  LF  M   G
Sbjct: 281 SNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEG 340

Query: 209 VP----PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
           V     P++     L++A   C L D G    + M      + +IE  G + D+   S  
Sbjct: 341 VELNLRPNEYTLCSLVTAA--CSLADCGLVLLEQM------LTRIEKSGFLRDLYVGSAL 392

Query: 265 VK 266
           V 
Sbjct: 393 VN 394



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%)

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V  CN LI+++ + G++  A KLF  M  + +VSW+ +I+G   +    EA +LF+ ++ 
Sbjct: 175 VFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVIS 234

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----- 261
           +G+ P+  A    L AC  CG           +K    I   I    C+ DM+       
Sbjct: 235 SGLLPNHFAVGSALRACQQCGST--------GIKLGMQIHAFICKLPCVSDMILSNVLMS 286

Query: 262 -----SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
                SG + +AH    ++    N + W ++IS  C RG+
Sbjct: 287 MYSDCSGSIDDAHRVFDEIKFR-NSVTWNSIISVYCRRGD 325


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 300/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G +PN +T+  +L++C+ + D++LGK VH  ++K     +  V   LV MY     
Sbjct: 523 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK-NR 581

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    +F+ + +RD  +W+ ++ GYA+ G    A+  F QMQ  GV P+E T+ + LS
Sbjct: 582 FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLS 641

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+ +  L+ G+ + S   K   +  + + +AL+DM+AKCG V+ A  +F  +  R  VS
Sbjct: 642 GCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 701

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG+G +A+  FE ML+ G  PD+V F+G+LSACSH GL+++G+++F+S+ 
Sbjct: 702 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 761

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P IEHY CMVD+L R+G+  E   FI++M + +N +IW T++ AC   G ++  
Sbjct: 762 KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 821

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L   EP  +SNY+LLS+++A    W+  T +R +M  RG+KK PG + +E++ +
Sbjct: 822 ERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQ 881

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+  D SH + +EI+  L ++ +K+   GY P T  VL ++++ +K++ L  HSE+L
Sbjct: 882 VHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERL 941

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL T     IRI KNLR+C DCH   K IS+I N+E+VVRD + FHHFK+
Sbjct: 942 ALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKN 996



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 153/296 (51%), Gaps = 3/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN+FT   ++ A   +GDL  G+S+H  V K+ F  D  V N LV MY    G
Sbjct: 422 MRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKI-G 480

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ G +VF+  + RD +SW+A++ G+         + +F QM   G  P+  T +++L 
Sbjct: 481 SVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR 540

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+ L  +++GK V + I K  ++ +  +  AL+DM+AK   ++ A  +F  +  R + +
Sbjct: 541 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 600

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT ++AG A  G+G +AV  F +M   GV P++      LS CS    +D GR+   SM 
Sbjct: 601 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMA 659

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
              G    +     +VDM  + G V++A E +    +  + + W T+I      G+
Sbjct: 660 IKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 714



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 3/295 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L+ CA  GDLN GK++HG V+K     D H+ N+LV++Y  C G      KVF E+
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC-GSANYACKVFGEI 189

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ERD VSW+A+I G+   G  + A++LF +M+  GV  +E T  T L AC+    LE GK
Sbjct: 190 PERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK 249

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V +   K      + + +AL+D++AKCG++  A ++F  M  +  VSW +++ G A  G
Sbjct: 250 QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMG 309

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
              + + LF  M  + +         +L  C++ G +  G +   S+    G        
Sbjct: 310 DAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFIS 368

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            C+VDM  + G   +A +   ++  + + + W  +I+    +G+ + A  + KR+
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQSREAAEVFKRM 422



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 1/227 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+FTY   LKAC+   DL  GK VH   +K     D+ V + LV +Y  C G
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC-G 278

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L  +VF  M ++++VSW+A++ G+A++G +   ++LF +M  S +   + T+ TVL 
Sbjct: 279 EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C + G L  G+ V S   +        +   L+DM++KCG    ALK+F  +    +VS
Sbjct: 339 GCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS 398

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           W+++I  L   G+  EA  +F+ M  +GV P+      L+SA +  G
Sbjct: 399 WSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 37/342 (10%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++ +KFT   VLK CA  G+L  G+ VH   ++     D  +   LV MY  C G     
Sbjct: 326 INFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKC-GLAGDA 384

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVF  + + D VSWSA+I    + G S +A ++F++M+ SGV P++ T+ +++SA TDL
Sbjct: 385 LKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDL 444

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G L  G+ + + + K        +CNAL+ M+ K G V    ++F +   R ++SW +++
Sbjct: 445 GDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALL 504

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G   +      + +F +ML  G  P+   F+ +L +CS    VD G             
Sbjct: 505 SGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG------------- 551

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
                               K+ H  I K  ++ N  +   L+        L+ AE+I  
Sbjct: 552 --------------------KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN 591

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           RLI  +      + ++   YA+  + EK  K    M + G+K
Sbjct: 592 RLIKRDLFA---WTVIVAGYAQDGQGEKAVKCFIQMQREGVK 630



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 4/195 (2%)

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L  C   G L  GK +   + K  +N    L N+L++++AKCG  + A K+F  +  R 
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YF 236
           +VSWT++I G    G G  AV LF EM   GV  ++  +   L ACS C  ++ G++ + 
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +++K   G    +     +VD+  + G +  A      MP + N + W  L++     G+
Sbjct: 254 EAIK--VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGFAQMGD 310

Query: 297 LKLAESITKRLIGNE 311
            +   ++  R+ G+E
Sbjct: 311 AEKVLNLFCRMTGSE 325


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 296/471 (62%), Gaps = 5/471 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +T+ F+LKAC    +    + VHG +++F +  D+ +   L+  Y    G IE   K
Sbjct: 124 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG-NGLIETAHK 182

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+EM  RD VSW++MI  Y + GL  +A+ ++ QM+IS V  D  T+V++LS+C  +GA
Sbjct: 183 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 242

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +G  +  F  ++ +  ++ + NALIDM+AKCG +  AL +F SM  R + +W S+I G
Sbjct: 243 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 302

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
             +HGRG EA+  F  ML AGV P+ + F+GLL  CSH GLV +G +YF  M ++F + P
Sbjct: 303 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 362

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+HYGCMVD+  R+G++KEA E I+  P + +P++WRTL+ +C     +++ E   + L
Sbjct: 363 GIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNL 422

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +    +   + VLLS IYA+    +   ++R+++  RG+K  PG + IE+ ++++ FV  
Sbjct: 423 VQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVD 482

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL----DINEEDKEDALNKHSEKLAIA 423
           DKSH  S+EIY  L+E+  +    GY    S ++     +  E   E + + HSEKLAIA
Sbjct: 483 DKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIA 542

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           + L +TP GT + IVKNLRVC DCH+ TKF+S  ++REI+VRDR RFHHFK
Sbjct: 543 YGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFK 593


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 301/480 (62%), Gaps = 7/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           MLE GV P+++T+PFVLKACA +     G+ +HG V K  F   D HV N+L+  YG C 
Sbjct: 134 MLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGHVAKLGFSQHDEHVGNSLISFYGRC- 192

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGG---YARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           G  EL R+ F++M   +S + ++       Y R GL  D +D F  M  +G  P+E +MV
Sbjct: 193 GEPELARRAFEQMEAEESTTAASWSALLAAYTRAGLWADCLDSFGAMARAGGRPEESSMV 252

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           + LSAC  LGA +VG+ +   + +  V  +  +  +L+DM+AKCG +DKA  +F +M+G+
Sbjct: 253 SALSACAHLGAYDVGRSIHCALLRNTVALNTFMETSLVDMYAKCGCIDKASAVFDAMDGK 312

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
              +++++++GLA+HG GL+A+ +F+ M   G  PD+  +VG+L+ACS  GL+++G   F
Sbjct: 313 NEWTYSAMVSGLALHGDGLKALQVFDAMAREGHKPDEAVYVGILNACSRSGLLEEGLRCF 372

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D M+ +  + P  +HYGCMVD++ R+GR+ +A   I  MP       WR+L++AC   G 
Sbjct: 373 DRMRLEHKVAPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDAAWRSLLNACRIHGN 432

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           ++LAE   + L G   ++  +YV+L+ ++A+   W+    +R     RG+ + PG + +E
Sbjct: 433 VELAERALQGLSGIGAVNAGDYVILADMHARTKNWDAAAALRTEAANRGLAQAPGFSAVE 492

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL--DINEEDKEDALN 414
           +    + F   D+SH ++ EIYEML +M  +++  GY P TSEV L  D  EE+K  A+ 
Sbjct: 493 VHGRAHRFASQDRSHPRTAEIYEMLHQMEWQLRFEGYEPDTSEVALTRDAGEEEKRRAVA 552

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HS+KLA+AF LL TP GTP+R+V NLR+  +CH+ +  IS+I+ RE+VVRDR+RFH F+
Sbjct: 553 AHSQKLAMAFGLLSTPEGTPVRVVTNLRMSKECHAYSALISEIFGREVVVRDRNRFHRFR 612



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           GS  GG+E    +F  + E ++  ++ ++ G+        A+ L+  M   GV PD  T 
Sbjct: 87  GSWPGGMEYAAAIFAALDEPEAFDYNTLMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTF 146

Query: 116 VTVLSACTDLGALEVGKWVESFIEK---QMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
             VL AC  L A   G+ +   + K      +  VG  N+LI  + +CG+ + A + F  
Sbjct: 147 PFVLKACARLAASGQGRQLHGHVAKLGFSQHDEHVG--NSLISFYGRCGEPELARRAFEQ 204

Query: 173 MNGRTIVSWTSVIAGLAMHGR-GLEAVAL--FEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           M      +  S  A LA + R GL A  L  F  M  AG  P++ + V  LSAC+H G  
Sbjct: 205 MEAEESTTAASWSALLAAYTRAGLWADCLDSFGAMARAGGRPEESSMVSALSACAHLGAY 264

Query: 230 DKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           D GR  +   ++N   +   +E    +VDM  + G + +A      M
Sbjct: 265 DVGRSIHCALLRNTVALNTFME--TSLVDMYAKCGCIDKASAVFDAM 309


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/453 (43%), Positives = 281/453 (62%), Gaps = 1/453 (0%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
            G   L   +HG  +K        V   L  +Y      I   R++FDE +E+   SW+A
Sbjct: 145 FGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMI-FARQLFDESAEKTLASWNA 203

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI G  + GL+  AI LF+ MQ + V P+ +T+ ++LSAC  +GAL +G+WV S I+   
Sbjct: 204 MISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNR 263

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
              +V +  ALIDM+AKCG +  A +LF  M  +  V+W ++I+G  +HG G EA+ LF 
Sbjct: 264 FESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFY 323

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           +ML + V P  + F+ +L ACSH GLV +G   F +M +DFG  P  EHY CMVD+L R+
Sbjct: 324 DMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRA 383

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           G++K+A EFI+ MP+E  P +W  L+ AC    +  LA   +++L   +P +   YVL+S
Sbjct: 384 GQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMS 443

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           +IY+   ++ +   +R+V  K+ + K PG TLIE+    + F  GD+SH QSK IY  LD
Sbjct: 444 NIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELD 503

Query: 383 EMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           ++  KM +AG+   T+ VL D+ EE+KE  +  HSEKLAIAF L+ T PG  IRI+KNLR
Sbjct: 504 KLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLR 563

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCH+ TKF+SKI  R IVVRD +RFHHFKD
Sbjct: 564 VCLDCHNWTKFLSKITKRVIVVRDANRFHHFKD 596



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 3/275 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL A A + +L LG  +    +K  F   + +   L+ ++  C G +E+ R +F E+ ++
Sbjct: 37  VLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKC-GEVEIARLLFGEIRKK 95

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D +S +AMI G+   G + D++ LF+++  SG      T+V ++   +  G   +   + 
Sbjct: 96  DLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIH 155

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            F  K  +     +  AL  ++ +  ++  A +LF     +T+ SW ++I+G   +G   
Sbjct: 156 GFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTD 215

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
            A++LF+ M +  V P+ V    +LSAC+  G +  G E+  S+         +     +
Sbjct: 216 AAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG-EWVHSLIKSNRFESNVYVSTAL 274

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +DM  + G +  A E    MP E N + W  +IS 
Sbjct: 275 IDMYAKCGSITVARELFDLMP-EKNEVTWNAMISG 308



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 46/299 (15%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
           MI G+ +     D+I +F  M + +G   D  T++ VL A  +L  L++G  +     K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
                V L   LI +F+KCG+V+ A  LF  +  + ++S  ++I+G   +G   ++V LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 202 EEMLEAGVPPDDVAFVGLLSA----------------CSHCGLVDK-------------- 231
           +E+L +G        VGL+                  C   G+V                
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 232 -----GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPII 283
                 R+ FD           +  +  M+    ++G    A    Q M    +  NP+ 
Sbjct: 181 NEMIFARQLFDESAEK-----TLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVT 235

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
             +++SAC   G L L E +   +  N    ESN  + + +     +    T  RE+ D
Sbjct: 236 VTSILSACAQIGALSLGEWVHSLIKSNR--FESNVYVSTALIDMYAKCGSITVARELFD 292


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 296/471 (62%), Gaps = 5/471 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +T+ F+LKAC    +    + VHG +++F +  D+ +   L+  Y    G IE   K
Sbjct: 106 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG-NGLIETAHK 164

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+EM  RD VSW++MI  Y + GL  +A+ ++ QM+IS V  D  T+V++LS+C  +GA
Sbjct: 165 VFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGA 224

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +G  +  F  ++ +  ++ + NALIDM+AKCG +  AL +F SM  R + +W S+I G
Sbjct: 225 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 284

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
             +HGRG EA+  F  ML AGV P+ + F+GLL  CSH GLV +G +YF  M ++F + P
Sbjct: 285 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 344

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+HYGCMVD+  R+G++KEA E I+  P + +P++WRTL+ +C     +++ E   + L
Sbjct: 345 GIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNL 404

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
           +    +   + VLLS IYA+    +   ++R+++  RG+K  PG + IE+ ++++ FV  
Sbjct: 405 VQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVD 464

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL----DINEEDKEDALNKHSEKLAIA 423
           DKSH  S+EIY  L+E+  +    GY    S ++     +  E   E + + HSEKLAIA
Sbjct: 465 DKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIA 524

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           + L +TP GT + IVKNLRVC DCH+ TKF+S  ++REI+VRDR RFHHFK
Sbjct: 525 YGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFK 575


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 295/480 (61%), Gaps = 5/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G++ + FT   VL A   + DL+ G   HG ++K  F  + HV + L+ +Y  C G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G+   RKVF+E++E D V W+ M+ GY++      DA++ FRQMQ  G  P++ + V V+
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 120 SACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC++L +   GK + S  ++  + +  + + NALI M++KCG++  A +LF  M     
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS  S+IAG A HG  +E++ LF+ MLE  + P  + F+ +LSAC+H G V++G  YF+ 
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  F I P+ EHY CM+D+L R+G++ EA   I +MP     I W +L+ AC   G ++
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LA     +++  EP + + YV+LS++YA   RWE+   +R+ M  RG+KK PG + IE+ 
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE---DKEDALNK 415
             I+ FV  D SH   KEIYE L+EM  KMK+AGYVP     L+  +     +KE  L  
Sbjct: 591 KRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGH 650

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF L+ T  G P+ +VKNLR+C DCH+A KFIS I  REI VRD HRFH FK+
Sbjct: 651 HSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKE 710



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 13/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+  + FT   V+ AC    D+ L   +H   +   F   + V N L+  YG   G
Sbjct: 131 MREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK-NG 187

Query: 61  GIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  ++VF  M   RD VSW++MI  Y +    + A+ LF++M   G+  D  T+ +VL
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTI 178
           +A T L  L  G      + K   +++  + + LID+++KC G +    K+F  +    +
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 179 VSWTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           V W ++++G + +   LE A+  F +M   G  P+D +FV ++SACS+     +G++   
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 238 -SMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            ++K+D   IP  +I     ++ M  + G +++A     +M  E N +   ++I+     
Sbjct: 368 LALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423

Query: 295 G 295
           G
Sbjct: 424 G 424



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 40/309 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK-------- 67
           +LK C    DL+ GKS+H   +K       +  N  + +Y  C G +   RK        
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKC-GRLAWARKAFQDISDP 72

Query: 68  -----------------------VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
                                  +FD++ E D VS++ +I  YA  G +  A+ LF  M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
             G+  D  T+  V++AC D   L +G+ + S       +  V + NAL+  + K GD+D
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 165 KALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            A ++F  M G R  VSW S+I     H  G +A+ LF+EM+  G+  D      +L+A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 224 SHCGLVDKGREYFDSM-KNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANP 281
           +    +  G ++   + K  F    +  H G  ++D+  + G        + +   E + 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGF---HQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 282 IIWRTLISA 290
           ++W T++S 
Sbjct: 308 VLWNTMVSG 316


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 312/481 (64%), Gaps = 7/481 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           M   G+  ++FTY +VLKAC      +  LN G+ +H  +L+  +   +H+  TLV MY 
Sbjct: 162 MNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYA 221

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEIT 114
              G +     VF++M  ++ VSWSAMI  YA+ G + +A++LFR++ +    +CP+ +T
Sbjct: 222 KF-GCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVT 280

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           MV+VL AC  L ALE G+ +  +I ++ ++  + + +AL+ M+A+CG ++   ++F  M+
Sbjct: 281 MVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMD 340

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSW S+I+   +HG G +A+ +FEEM   GV P  ++FV +L ACSH GLVD+G+ 
Sbjct: 341 KRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKM 400

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F+SM    GI P +EHY CMVD+L R+ R++EA + I+ M IE  P +W +L+ +C   
Sbjct: 401 LFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIH 460

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
             ++LAE  + RL   EP +  NYVLL+ IYA+   W+   +++++++ RG++K+PG + 
Sbjct: 461 CNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSW 520

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE+  +IY FV  D+ + + ++++ +L ++  ++K+ GYVP T  VL D+   +KE  + 
Sbjct: 521 IEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVL 580

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLA+AF L+ +  G  IRI K+LR+C DCHS TKFISK  N+EI+VRD +RFHHF+
Sbjct: 581 GHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 640

Query: 475 D 475
           D
Sbjct: 641 D 641



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L    +P + TY  ++ +C     L   + VH  +L+  F  D  +   L++MY S   
Sbjct: 61  LLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMY-SFFD 119

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RKVFD+   R    ++A+    +  G   + ++++R+M   G+  D  T   VL 
Sbjct: 120 SIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLK 179

Query: 121 ACTD----LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           AC      +  L  G+ + + I +   +  V +   L+DM+AK G V  A  +F  M  +
Sbjct: 180 ACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVK 239

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEE-MLEA-GVPPDDVAFVGLLSACSHCGLVDKGR- 233
            +VSW+++IA  A +G+  EA+ LF E MLE   + P+ V  V +L AC+    +++GR 
Sbjct: 240 NVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRL 299

Query: 234 -EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
              +   K    I+P I     +V M  R G+++       +M  + + + W +LIS+  
Sbjct: 300 IHGYILRKGLDSILPVI---SALVTMYARCGKLELGQRVFDQMD-KRDVVSWNSLISSYG 355

Query: 293 ARGELKLAESITKRLIGN--EP 312
             G  K A  I + +  N  EP
Sbjct: 356 VHGFGKKAIGIFEEMTYNGVEP 377


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/429 (44%), Positives = 277/429 (64%), Gaps = 1/429 (0%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           ++N L++MY  C G +E  RKVFD M   D+ SW+ MI          +A++LF +M + 
Sbjct: 13  LENALLNMYVRC-GSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLE 71

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           G+ P  +T+ +VL+AC   GAL+VGK + S ++    + SV    AL+DM+AKCG ++ +
Sbjct: 72  GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECS 131

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            K+F +M  R  VSWT++IA LA HG+G EA+ LF+EM   G+  D   F+ +L ACSH 
Sbjct: 132 SKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHA 191

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           GL+ +  E+F SM  D+ I P   HY   +D + R+GR+++A E I  MP     + W+T
Sbjct: 192 GLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKT 251

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L++AC    + + A  + + L    P     Y LL ++YA   R+  + ++R+ M  RG+
Sbjct: 252 LLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGL 311

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
           KK+PG + IE+ N+++EFV GD++H    EI   L+++G +M++AGYVP T +VL  +NE
Sbjct: 312 KKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNE 371

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           E+KE  +  HSEKLAIAF L+ TPPGTP+ IVKNLRVC+DCH+ATK I+KI  R IVVRD
Sbjct: 372 EEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRD 431

Query: 467 RHRFHHFKD 475
            HRFHHF+D
Sbjct: 432 THRFHHFED 440



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P   T   VL ACA  G L +GK +H  +    F   +  Q  L+ MY  C G +E 
Sbjct: 72  GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKC-GSLEC 130

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF  M  R+SVSW+AMI   A+ G   +A++LF++M + G+  D  T + VL AC+ 
Sbjct: 131 SSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSH 190

Query: 125 LGAL-EVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSW 181
            G + E  ++  S +E   +  +    C AL D   + G +  A +L  SM      V+W
Sbjct: 191 AGLIKESLEFFHSMVEDYAIAPTETHYCRAL-DTIGRAGRLQDAEELIHSMPFHPETVTW 249

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
            +++    +H +   A  +  E+L    P D +A+  L
Sbjct: 250 KTLLNACRIHSQAERATKV-AELLAKLAPEDSMAYTLL 286


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 295/480 (61%), Gaps = 5/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G++ + FT   VL A   + DL+ G   HG ++K  F  + HV + L+ +Y  C G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G+   RKVF+E++E D V W+ M+ GY++      DA++ FRQMQ  G  P++ + V V+
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 120 SACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC++L +   GK + S  ++  + +  + + NALI M++KCG++  A +LF  M     
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS  S+IAG A HG  +E++ LF+ MLE  + P  + F+ +LSAC+H G V++G  YF+ 
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  F I P+ EHY CM+D+L R+G++ EA   I +MP     I W +L+ AC   G ++
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LA     +++  EP + + YV+LS++YA   RWE+   +R+ M  RG+KK PG + IE+ 
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE---DKEDALNK 415
             I+ FV  D SH   KEIYE L+EM  KMK+AGYVP     L+  +     +KE  L  
Sbjct: 591 KRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGH 650

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF L+ T  G P+ +VKNLR+C DCH+A KFIS I  REI VRD HRFH FK+
Sbjct: 651 HSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKE 710



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 13/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+  + FT   V+ AC    D+ L   +H   +   F   + V N L+  YG   G
Sbjct: 131 MREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK-NG 187

Query: 61  GIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  ++VF  M   RD VSW++MI  Y +    + A+ LF++M   G+  D  T+ +VL
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTI 178
           +A T L  L  G      + K   +++  + + LID+++KC G +    K+F  +    +
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 179 VSWTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           V W ++++G + +   LE A+  F +M   G  P+D +FV ++SACS+     +G++   
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 238 -SMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            ++K+D   IP  +I     ++ M  + G +++A     +M  E N +   ++I+     
Sbjct: 368 LALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423

Query: 295 G 295
           G
Sbjct: 424 G 424



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 40/309 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK-------- 67
           +LK C    DL+ GKS+H   +K       +  N  + +Y  C G +   RK        
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKC-GRLAWARKAFQDISDP 72

Query: 68  -----------------------VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
                                  +FD++ E D VS++ +I  YA  G +  A+ LF  M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
             G+  D  T+  V++AC D   L +G+ + S       +  V + NAL+  + K GD+D
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 165 KALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            A ++F  M G R  VSW S+I     H  G +A+ LF+EM+  G+  D      +L+A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 224 SHCGLVDKGREYFDSM-KNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANP 281
           +    +  G ++   + K  F    +  H G  ++D+  + G        + +   E + 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGF---HQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 282 IIWRTLISA 290
           ++W T++S 
Sbjct: 308 VLWNTMVSG 316


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/506 (39%), Positives = 311/506 (61%), Gaps = 31/506 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML  G+ P++ T   +L ACA + DL  G+S+H  V +        +   L+ MY  C  
Sbjct: 228 MLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGD 287

Query: 60  ------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                         G +++ R +FD+M +RD V+++++I GY  
Sbjct: 288 IGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIH 347

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +A+ LF QM+   +  D  TMV++L+AC  LGAL  G+ + + IE+++V   + L
Sbjct: 348 GGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYL 407

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+DM+ KCG V++A  +F++M+ R + +W+++IAGLA +G G  A+  F  M   G 
Sbjct: 408 GTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V ++ +L+ACSH  L+D+GR YF+ M+    I P IEHYGCM+D+L RSG + EA 
Sbjct: 468 QPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAM 527

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + ++ MP++ N +IW +++SAC    +  LA +  + L+  EP  ++ YV L +IY    
Sbjct: 528 DLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSR 587

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +WE  ++IR +M++RG+KK  G + I +  ++++F+  D++H Q  EI  M++E+ R++K
Sbjct: 588 QWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLK 647

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P TS++ +D++EE+KE AL  HSEK+AIAF L+   P  P+ I+KNLRVC DCHS
Sbjct: 648 SVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHS 707

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K IS+I+NREI+VRDR RFHHF+D
Sbjct: 708 AIKLISRIWNREIIVRDRSRFHHFRD 733



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 160/372 (43%), Gaps = 82/372 (22%)

Query: 1   MLEYGVSPNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFGDDIH-VQNTLVHMYGSC 58
           M   GV  + FT+ F+ K CA G   + L + +H A  +      +  V N ++HMY   
Sbjct: 94  MRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMY--- 150

Query: 59  EGGIELG-----RKVFDEMSERDSV-------------------------------SWSA 82
              +ELG     R+ FD++  +D+V                               SW+ 
Sbjct: 151 ---VELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTG 207

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL----------------G 126
           +I GY+R G + +A+D F  M   G+ PDE+T++ +LSAC  L                G
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKG 267

Query: 127 ALEVGKWVESFIEKQMVNRSVGLC----------------NALIDMFAKCGDVDKALKLF 170
            L  GK V + I+       +G                  NA+ID + K G VD A  LF
Sbjct: 268 MLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLF 327

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  R +V++ S+I G    GR  EA+ LF +M    +  D+   V LL+AC+  G + 
Sbjct: 328 DQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALP 387

Query: 231 KGREYFDSMKNDFGIIPKIEHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +GR     ++     + +++ Y    ++DM  + GRV+EA    Q M +  +   W  +I
Sbjct: 388 QGRALHACIEQR---LVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMI 443

Query: 289 SACCARGELKLA 300
           +     G  K A
Sbjct: 444 AGLAFNGMGKAA 455



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 123/296 (41%), Gaps = 35/296 (11%)

Query: 46  HVQNTLVHMYGSCEG-GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
           H+ N+LV+ +   +   +     +FD M     +  +A+   +         + L+R+M+
Sbjct: 36  HLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMR 95

Query: 105 ISGVCPDEITMVTVLSACTDLGA-LEVGKWVESFIEKQMVNRSVGLC-NALIDMF----- 157
            +GVC D  T   +   C    A + + + + +   + M+  +V L  N +I M+     
Sbjct: 96  RTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGL 155

Query: 158 --------------------------AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
                                     AK G +D A  L R    R ++SWT +I+G +  
Sbjct: 156 AGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRA 215

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           GR  EAV  F  ML  G+ PD+V  +GLLSAC+    +  GR     +  + G++   + 
Sbjct: 216 GRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRS-LHKLVGEKGMLMSGKL 274

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
              ++DM  + G +  A E    +     P  W  +I   C  G + +A  +  ++
Sbjct: 275 VVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQM 330


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 304/510 (59%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--QFGDDIH--VQNTLVHMYG 56
           M+   +  ++FT+  V+  CA  G   LGK +H   LK       D+   V N L+  Y 
Sbjct: 280 MIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYW 339

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGY----------------------------- 87
            C G +++ +++F++M ERD VSW+ ++ GY                             
Sbjct: 340 KC-GKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMIS 398

Query: 88  --ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
             A++G + +A+  F +M++ G  P +      + +C+ LG+L+ G+ + + + +     
Sbjct: 399 GLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYES 458

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S+   NALI M+A+CG VD A  LF +M     +SW ++IA L  HG+G +A+ LFEEML
Sbjct: 459 SLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEML 518

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           + G+ PD ++F+ ++SACSH GLV +GR+YFDSM N +G+ P  EHY  ++D+LCR+G+ 
Sbjct: 519 KEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKF 578

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
            EA E ++ MP E    IW  L++ C   G + L     +RL   +P H+  YVLLS++Y
Sbjct: 579 SEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMY 638

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           A   +W    K+R++M  RG+KK PG + IE++N+++ F+ GD +H + ++IY  L+++ 
Sbjct: 639 AVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLV 698

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +M+K GYVP T  VL D+  + KE  L+ HSEKLA+A+  +K P G  +R+ KNLR+C 
Sbjct: 699 LEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICG 758

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+A KF+SK+  REIVVRD  RFHHF+D
Sbjct: 759 DCHNAFKFMSKVVGREIVVRDGKRFHHFRD 788



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 150/364 (41%), Gaps = 77/364 (21%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG-KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----- 61
           P+ +T+  VL A A + +     + +H AV+K   G    V N L+  Y  C        
Sbjct: 145 PDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQS 204

Query: 62  ---IELGRKVFDEMSERDSVSWS-------------------------------AMIGGY 87
              +   RK+FDEM  RD +SW+                               AMI GY
Sbjct: 205 SSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGY 264

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-- 145
           A  GL  +A ++FR+M +S +  DE T  +V+S C + G   +GK + ++  K + N   
Sbjct: 265 AHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAP 324

Query: 146 --SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------- 184
             ++ + NALI  + KCG VD A ++F  M  R +VSW  +                   
Sbjct: 325 DVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNE 384

Query: 185 ------------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                       I+GLA  G   EA+  F  M   G  P D AF G + +CS  G +  G
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHG 444

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R+    +   +G    +     ++ M  R G V  AH     MP   + I W  +I+A  
Sbjct: 445 RQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALG 502

Query: 293 ARGE 296
             G+
Sbjct: 503 QHGQ 506



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 123/294 (41%), Gaps = 52/294 (17%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           DI  + TL+  Y S  G ++L RK+F +  +  RDSV ++AMI  Y+       AI+LF 
Sbjct: 78  DIVARTTLIAAY-SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            MQ     PD  T  +VL A   +   E   + +   + K        + NALI  + KC
Sbjct: 137 DMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKC 196

Query: 161 GD---------VDKALKLFRSMNGRTIVSWTSV--------------------------- 184
                      + +A KLF  M  R  +SWT++                           
Sbjct: 197 AASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVA 256

Query: 185 ----IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFD 237
               I+G A  G  LEA  +F +M+ + +  D+  F  ++S C++ G    G+E   YF 
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYF- 315

Query: 238 SMKNDFGIIPKIEH--YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            +K      P +       ++    + G+V  A E   KMP E + + W  ++S
Sbjct: 316 -LKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILS 367


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 299/505 (59%), Gaps = 34/505 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
           G  P+  T   VL A   + DL +G  +HG V+K     D  V + L+ MYG C      
Sbjct: 245 GFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEM 304

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                       E  + L R++ D+  E + VSW++MI   ++ 
Sbjct: 305 SQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQN 364

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LFR+MQI+GV P+ +T+  +L AC ++ AL  GK    F  ++ ++  V + 
Sbjct: 365 GRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM+AKCG +  +   F  +  + +V W +VIAG AMHG+  EA+ +F+ M  +G  
Sbjct: 425 SALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQK 484

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD ++F  +LSACS  GL ++G  YF+SM + +GI  ++EHY CMV +L R+G++++A+ 
Sbjct: 485 PDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYA 544

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I++MP+  +  +W  L+S+C     + L E   ++L   EP +  NY+LLS+IYA    
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGM 604

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W +  ++R++M  +G++K PG + IE+ N+++  + GDKSH Q  +I E LD++  +MKK
Sbjct: 605 WNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKK 664

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P  + VL D+ E+DKE  L  HSEKLA+ F LL TPPG P++++KNLR+C DCH  
Sbjct: 665 LGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVV 724

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            KFIS    REI VRD +RFHHFK+
Sbjct: 725 IKFISSFERREIFVRDTNRFHHFKE 749



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 166/374 (44%), Gaps = 75/374 (20%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+    P  +KACAG+  L   + VHG      F  D  VQ++LVHMY  C  
Sbjct: 105 MLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ 164

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLG----------------------------- 91
            I    +VFD M E D VSWSA++  YAR G                             
Sbjct: 165 -IRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223

Query: 92  ------LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
                 L ++A+ +F  M + G  PD  T+ +VL A  DL  L +G  +  ++ KQ +  
Sbjct: 224 GFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVS 283

Query: 146 SVGLCNALIDMFAKC-------------------------------GDVDKALKLFRSMN 174
              + +ALIDM+ KC                               G V+ +L+LFR + 
Sbjct: 284 DKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLK 343

Query: 175 GR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
            +     +VSWTS+IA  + +GR +EA+ LF EM  AGV P+ V    LL AC +   + 
Sbjct: 344 DQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALM 403

Query: 231 KGR-EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            G+  +  S++   GI   +     ++DM  + GR++ +      +P + N + W  +I+
Sbjct: 404 HGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIA 460

Query: 290 ACCARGELKLAESI 303
                G+ K A  I
Sbjct: 461 GYAMHGKAKEAMEI 474



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 5/218 (2%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--CEGGIELGRKVFDEMSERDSVSWS 81
             L+  +  H  +LK    +D H+   L+  Y +  C     L   V D + E +  S+S
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATL---VLDLVPEPNVFSFS 83

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
            +I  +++      A+  F QM   G+ PD   + + + AC  L AL+  + V       
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
             +    + ++L+ M+ KC  +  A ++F  M    +VSW++++A  A  G   EA  LF
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLF 203

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            EM ++GV P+ +++ G+++  +H GL  +    F  M
Sbjct: 204 SEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/503 (39%), Positives = 308/503 (61%), Gaps = 36/503 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN  T   VL ACA   DL  G+ +   +    F + + + N ++ MY  C G I   
Sbjct: 270 VKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKC-GCINDA 328

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDA----------------------------- 96
           + +F++MSE+D VSW+ M+ G+A+LG   +A                             
Sbjct: 329 KDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPR 388

Query: 97  --IDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
             + LF +MQ+S    PDE+T++  L A   LGA++ G W+  +I+K  +N +  L  +L
Sbjct: 389 VALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSL 448

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           +DM+AKCG+++KA+++F ++  + +  W+++I  LAM+G+G  A+ LF  MLEA + P+ 
Sbjct: 449 LDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNA 508

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V F  +L AC+H GLV++G + F+ M+  +GI+P+I+HY C+VD+  R+G +++A  FI+
Sbjct: 509 VTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIE 568

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
           KMPI     +W  L+ AC   G ++LAE   + L+  EP +   +VLLS+IYAK   WEK
Sbjct: 569 KMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEK 628

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
            + +R++M    +KK P  + I+++  ++EF+ GD SH  S++IY  LDE+  K K  GY
Sbjct: 629 VSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGY 688

Query: 394 VPTTSEVLLDINEEDK--EDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
            P  S  LL ++EED   E +LN HSEKLAIAF L+ T    PIRIVKN+R+C DCH+  
Sbjct: 689 KPDMSN-LLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFA 747

Query: 452 KFISKIYNREIVVRDRHRFHHFK 474
           K +S++Y+R+I++RDR+RFHHF+
Sbjct: 748 KLVSQLYDRDILLRDRYRFHHFR 770



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 176/350 (50%), Gaps = 39/350 (11%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PNKFT+PF+ KA + +  L+LG  +HG V+K     D+ + N+L++ YGS  G  +L  +
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGS-SGAPDLAHR 229

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  M  +D VSW+AMI  +A  GL   A+ LF++M++  V P+ ITMV+VLSAC     
Sbjct: 230 VFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKID 289

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE G+W+ S+IE       + L NA++DM+ KCG ++ A  LF  M+ + IVSWT+++ G
Sbjct: 290 LEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDG 349

Query: 188 LA-------------------------------MHGRGLEAVALFEEM-LEAGVPPDDVA 215
            A                                +G+   A++LF EM L     PD+V 
Sbjct: 350 HAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVT 409

Query: 216 FVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            +  L A +  G +D G   +    K+D  +   +     ++DM  + G + +A E    
Sbjct: 410 LICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLA--TSLLDMYAKCGNLNKAMEVFHA 467

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           +    +  +W  +I A    G+ K A  +   ++  E   + N V  ++I
Sbjct: 468 VE-RKDVYVWSAMIGALAMYGQGKAALDLFSSML--EAYIKPNAVTFTNI 514



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG--SCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           K +H  +L+     D +  + L+  Y   SC   I   + VF+++ + +   W+ +I GY
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLI-YAKNVFNQIPQPNLYCWNTLIRGY 147

Query: 88  ARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           A     T +  +F  M  S    P++ T   +  A + L  L +G  +   + K  ++  
Sbjct: 148 ASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSD 207

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + + N+LI+ +   G  D A ++F +M G+ +VSW ++I   A+ G   +A+ LF+EM  
Sbjct: 208 LFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEM 267

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             V P+ +  V +LSAC+    ++ GR     ++N+ G    +     M+DM  + G + 
Sbjct: 268 KDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN-GFTEHLILNNAMLDMYVKCGCIN 326

Query: 267 EAHEFIQKMPIEANPIIWRTLI 288
           +A +   KM  E + + W T++
Sbjct: 327 DAKDLFNKMS-EKDIVSWTTML 347


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/429 (42%), Positives = 283/429 (65%), Gaps = 1/429 (0%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           V N LV MY    G  +    VF++M+++D +SW++++ G    G   +A+ LF +M+I 
Sbjct: 4   VNNALVDMYAK-XGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           G+ PD+I +  VLSAC +L  LE GK V +   K  +  S+ + N+L+ M+AKCG ++ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            K+F SM  + +++WT++I G A +GRG E++  + +M+ +GV PD + F+GLL ACSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           GLV+ GR YF SM+  +GI P  EHY CM+D+L RSG++ EA E + +M ++ +  +W+ 
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L++AC   G ++L E     L   EP +   YVLLS++Y+   +WE+  K R +M  RG+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
            K PG + IE+ ++++ F+  D+SH ++ EIY  +DE+   +K+AGYVP  +  L D++E
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           E KE  L  HSEKLA+AF LL  PPG PIRI KNLR+C DCH+A K++S +++R +++RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 467 RHRFHHFKD 475
            + FHHF++
Sbjct: 423 SNCFHHFRE 431



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P++     VL ACA +  L  GK VH   LK   G  + V N+LV MY  C G IE 
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKC-GCIED 121

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVFD M  +D ++W+A+I GYA+ G   ++++ +  M  SGV PD IT + +L AC+ 
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G +E G+ + +S  E   +         +ID+  + G + +A +L   M  +   + W 
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 241

Query: 183 SVIAGLAMHG 192
           +++A   +HG
Sbjct: 242 ALLAACRVHG 251


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 290/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ FT   +L ACA +  L  GK +HG VL+     D  V  +L+  Y  C G
Sbjct: 442 MTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC-G 500

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R +FD M +++ VSW+AMI GY++ GL  +++ LFR+    G+   EI +V+V  
Sbjct: 501 KASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFG 560

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L AL +GK    ++ K +      +  ++IDM+AK G + ++ K+F  +  + + S
Sbjct: 561 ACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVAS 620

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I    +HG G EA+ L+E M + G  PD   ++G+L AC H GLV++G +YF  M+
Sbjct: 621 WNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQ 680

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N   I PK+EHY C++DML R+GR+ +A   + +MP EA+  IW +L+ +C   G L++ 
Sbjct: 681 NFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIG 740

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+L+  EP    NYVLLS++YA L +W+   ++R++M + G++K  G + IE+   
Sbjct: 741 EKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGR 800

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y FV GD    +S EI  +   +  ++ + GY P TS VL ++ EE+K D L  HSEKL
Sbjct: 801 VYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKL 860

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LLKT  GT +RI KNLR+C DCH+A K ISK   REIVVRD  RFHHF+D
Sbjct: 861 AISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRD 915



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 128/219 (58%), Gaps = 4/219 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+P V+KAC GI D+ LG+ +HG V+K     D+ V N LV MYG C G ++   K
Sbjct: 144 PDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKC-GAVDEAMK 202

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLG 126
           VFD M E + VSW++MI  ++  G S D+ DL  +M    G+ PD +T+VT+L  C   G
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +++G  +     K  ++  V + NA++ M++KCG +++A   F   N + +VSW ++I+
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322

Query: 187 GLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSAC 223
             ++ G   EA  L +EM   G  +  ++V  + +L AC
Sbjct: 323 AFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 18/301 (5%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+  T   +L  CAG G++++G  +HG  +K    +++ V N +V+MY  C G +
Sbjct: 241 EEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKC-GYL 299

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLS 120
              +  F + + ++ VSW+ MI  ++  G   +A +L ++MQI G  +  +E+T++ VL 
Sbjct: 300 NEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLP 359

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC D   L   K +  +  +    + V L NA I  +AKCG ++ A K+F  +  +T+ S
Sbjct: 360 ACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSS 418

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF---- 236
           W ++I G A +G   +A+ L  +M  +G  PD      LL AC+H   +  G+E      
Sbjct: 419 WNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVL 478

Query: 237 -DSMKNDFGI-IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            + ++ DF +    + HY          G+   A     +M  + N + W  +IS     
Sbjct: 479 RNGLETDFFVGTSLLSHY-------IHCGKASSARVLFDRMK-DKNLVSWNAMISGYSQN 530

Query: 295 G 295
           G
Sbjct: 531 G 531



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 13/336 (3%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT-LVHMYGSCEGGIELGRKVFDEMS 73
            +L+AC    D+  G+ +H  V       + +V NT L+ MY  C   ++  R VFD M 
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLD-SRLVFDNME 106

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
            ++ + W+A++ GY R GL  D + +F  +   +   PD  T  +V+ AC  +  + +G+
Sbjct: 107 TKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGE 166

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   + K  +   V + NAL+ M+ KCG VD+A+K+F  M    +VSW S+I   + +G
Sbjct: 167 VIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENG 226

Query: 193 RGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
              ++  L  EML E G+ PD V  V +L  C+  G VD G      +    G+  ++  
Sbjct: 227 FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSEEVMV 285

Query: 252 YGCMVDMLCRSGRVKEAH-EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL-IG 309
              MV M  + G + EA   F++      N + W T+ISA    G++  A ++ + + I 
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNN--NKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQ 343

Query: 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345
            E M  +   +L+ + A L     K ++R + +  G
Sbjct: 344 GEEMKANEVTILNVLPACL----DKLQLRSLKELHG 375



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 150/314 (47%), Gaps = 16/314 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  N+ T   VL AC     L   K +HG   +  F   + + N  +  Y  C G +   
Sbjct: 347 MKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAKC-GALNSA 404

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVF  + ++   SW+A+IGG+A+ G    A+ L  QM  SG  PD  T+ ++L AC  L
Sbjct: 405 EKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHL 464

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +L+ GK +  ++ +  +     +  +L+  +  CG    A  LF  M  + +VSW ++I
Sbjct: 465 KSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMI 524

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE----YFDSMKN 241
           +G + +G   E++ALF + L  G+   ++A V +  ACS    +  G+E       +++ 
Sbjct: 525 SGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQT 584

Query: 242 DFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +   +      GC ++DM  +SG +KE+ +    +  + N   W  +I A    G  K A
Sbjct: 585 EDAFV------GCSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIHGHGKEA 637

Query: 301 ESITKRL--IGNEP 312
             + +R+  +G  P
Sbjct: 638 IELYERMKKVGQMP 651


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 311/505 (61%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M++ GV P++ +    + +C+ + ++  GKS HG VL+  F    ++ N L+ MY  C  
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHR 387

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++   + F+ M E++ VSW+ +I G  + 
Sbjct: 388 QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQG 447

Query: 91  GLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            L  +AI++F  MQ   GV  D +TM+++ SAC  LGAL++ KW+  +IEK  +   V L
Sbjct: 448 SLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              L+DMF++CGD + A+ +F S+  R + +WT+ I  +AM G    A+ LF++M+E G+
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD VAFVG L+ACSH GLV +G+E F SM    G+ P+  HYGCMVD+L R+G ++EA 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I+ MP+E N +IW +L++AC  +G +++A    +++    P    +YVLLS++YA   
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    K+R  M ++G++K PG++ I++  + +EF  GD+SH +   I  MLDE+ ++  
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRAS 747

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             G+VP  S VL+D++E++K   L++HSEKLA+A+ L+ +  GT IRIVKNLRVC+DCHS
Sbjct: 748 HLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHS 807

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
             KF SK+YNREI++RD +RFH+ +
Sbjct: 808 FAKFASKVYNREIILRDNNRFHYIR 832



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 170/321 (52%), Gaps = 33/321 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SP+K+T+PF L ACA       G  +HG ++K  +  D+ VQN+LVH Y  C G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAEC-G 183

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVL 119
            ++  RKVFDEMSER+ VSW++MI GYAR   + DA+DLF R ++   V P+ +TMV V+
Sbjct: 184 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVI 243

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  L  LE G+ V +FI    +  +  + +AL+DM+ KC  +D A +LF       + 
Sbjct: 244 SACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLD 303

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGL 228
              ++ +     G   EA+ +F  M+++GV PD ++ +  +S+CS           H  +
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYV 363

Query: 229 VDKGREYFDSMKN--------------DFGIIPKIEH-----YGCMVDMLCRSGRVKEAH 269
           +  G E +D++ N               F I  ++ +     +  +V     +G V  A 
Sbjct: 364 LRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW 423

Query: 270 EFIQKMPIEANPIIWRTLISA 290
           E  + MP E N + W T+IS 
Sbjct: 424 ETFETMP-EKNIVSWNTIISG 443



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 36/303 (11%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+PN  T   V+ ACA + DL  G+ V+  +       +  + + LV MY  C   I++ 
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA-IDVA 290

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +++FDE    +    +AM   Y R GL+ +A+ +F  M  SGV PD I+M++ +S+C+ L
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  GK    ++ +        +CNALIDM+ KC   D A ++F  M+ +T+V+W S++
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410

Query: 186 AGLAMHGR------------------------GLEAVALFEEMLEA--------GVPPDD 213
           AG   +G                         GL   +LFEE +E         GV  D 
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           V  + + SAC H G +D  +  Y+   KN  GI   +     +VDM  R G  + A    
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIF 528

Query: 273 QKM 275
             +
Sbjct: 529 NSL 531



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVF 69
           P  LK C  I +L   K  H ++ K    +D+     LV    SCE G    +   ++VF
Sbjct: 36  PSSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVF 90

Query: 70  DEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           +      +   ++++I GYA  GL  +AI LF +M  SG+ PD+ T    LSAC    A 
Sbjct: 91  ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G  +   I K    + + + N+L+  +A+CG++D A K+F  M+ R +VSWTS+I G 
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

Query: 189 AMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           A      +AV LF  M+ +  V P+ V  V ++SAC+    ++ G + +  ++N  GI  
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEV 269

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQK 274
                  +VDM  +   +  A     +
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDE 296


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 302/471 (64%), Gaps = 2/471 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   +L   A   D+N GK +HG  ++  F  D+ + ++L+ MY  C   +E  
Sbjct: 223 LKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNR-LECS 281

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            + F  +  +D++SW+++I G  + G     +  FR+M    V P  ++  +V+ AC  L
Sbjct: 282 LRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHL 341

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +G+ +   I +   + +  + ++L+DM+AKCG++  A  +F  ++ R +V+WT++I
Sbjct: 342 TALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAII 401

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G AMHG  L+AV+LFE MLE GV P  VAF+ +L+ACSH GLVD+G  YF+SM+ DFGI
Sbjct: 402 MGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGI 461

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESIT 304
            P +EHY  + D+L R+GR++EA++FI  M  ++    +W  L++AC A   ++LAE + 
Sbjct: 462 APGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVL 521

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +L+  +  +   YVL+S+IY+   RW+   ++R  M K+G+KK P  + IE+ N+++ F
Sbjct: 522 DKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTF 581

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH    +I + LD +  +M+K GYV  T++VL D++EE K + L+ HSE+LAIA+
Sbjct: 582 MAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAY 641

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            ++ T  GT IR++KN+RVC DCH+A KFI+KI  REI VRD  RFHHFK+
Sbjct: 642 GIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKN 692



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 154/323 (47%), Gaps = 17/323 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M    V PN+  +P +LKA   +    L  S+H   ++     D+++ N L++ Y     
Sbjct: 101 MRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHN 160

Query: 59  ------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
                       E GI+  +KVFD M  RD VSW+ +I G+A+ G+  +A+D+ R+M  +
Sbjct: 161 AGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKN 220

Query: 107 G-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
           G + PD  T+ ++L    +   +  GK +  +  +   +  V + ++LIDM+AKC  ++ 
Sbjct: 221 GKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLEC 280

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           +L+ F  +  +  +SW S+IAG   +G     +  F  ML+  V P  V+F  ++ AC+H
Sbjct: 281 SLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAH 340

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
              +  GR+    +    G          +VDM  + G +K A     ++  + + + W 
Sbjct: 341 LTALSLGRQLHGCIVR-LGFDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWT 398

Query: 286 TLISACCARGELKLAESITKRLI 308
            +I  C   G    A S+ + ++
Sbjct: 399 AIIMGCAMHGHALDAVSLFENML 421


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 293/480 (61%), Gaps = 8/480 (1%)

Query: 1   MLEYGVSPNKFTY--PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M + GV  N +TY   FVL     + DL  G+ +HG VL      D  V+++L+ MY  C
Sbjct: 235 MAQAGVVFNHYTYSTAFVLAGMLLLPDL--GRQLHGRVLIAALEGDAFVRSSLMDMYCKC 292

Query: 59  EGGIELGRKVFDEMS--ERD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
            G +E    VFD  S   RD + +WS M+ GY + G   +A+DLFR+M   GV  D  T+
Sbjct: 293 -GLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTL 351

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +V +AC ++G +E G+ V   +EK        L +A++DM+AKCG+++ A  +F     
Sbjct: 352 TSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACT 411

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           + I  WTS++   A HG+G  A+ LFE M    + P+++  VG+LSACSH GLV +G  Y
Sbjct: 412 KNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELY 471

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F  M+ ++GI+P IEHY C+VD+  RSG + +A  FI++  I    I+W+TL+SAC    
Sbjct: 472 FKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQ 531

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
             + A+  +++L+  E     +YV+LS+IYA   +W    ++R  M +R ++K PG + I
Sbjct: 532 HNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWI 591

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
            L N ++ FV GD SH QS EIY  L+++  ++K+ GY   T  V+ D+ +E +E AL  
Sbjct: 592 HLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKF 651

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAF ++ TP GTP+RI KNLRVC DCH A K+IS    REIVVRD +RFHHFKD
Sbjct: 652 HSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKD 711



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 68/361 (18%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML  G  +PN F    V++ CAG+GD+  GK VHG +L+     D+ + N ++ MY  C 
Sbjct: 102 MLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKC- 160

Query: 60  GGIELGRKVFDEMSERDSVSWS-------------------------------AMIGGYA 88
           G  E  R+VF  M+ERD+VSW+                                +I G  
Sbjct: 161 GQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLM 220

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVT--VLSA---CTDLGALEVGKWVESFIEKQMV 143
           R G + DA+   R+M  +GV  +  T  T  VL+      DLG    G+ + + +E    
Sbjct: 221 RSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAF 280

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLF-------RSMNGRTIVSWTSVIAGLAMHGRGLE 196
            RS     +L+DM+ KCG ++ A  +F       R MN     +W++++AG   +GR  E
Sbjct: 281 VRS-----SLMDMYCKCGLLEAAASVFDHWSPLTRDMN----FAWSTMVAGYVQNGREEE 331

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH----- 251
           A+ LF  ML  GV  D      + +AC++ G+V++GR+         G + K+ +     
Sbjct: 332 ALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQV-------HGCVEKLWYKLDAP 384

Query: 252 -YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
               +VDM  + G +++A     +   + N  +W +++ +  + G+ ++A  + +R+   
Sbjct: 385 LASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCSYASHGQGRIAIELFERMTAE 443

Query: 311 E 311
           +
Sbjct: 444 K 444



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 8/198 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           SP   T+PF          L  G++  G  L+ +     H + +++  +          R
Sbjct: 13  SPRASTHPF------SAALLLRGRAARGGSLEARLATVPHERASVLRFWVR-RRRFHDAR 65

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDL 125
            VFDE   R +  W+  I G AR G   D +  F +M   G   P+   +  V+  C  +
Sbjct: 66  GVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGM 125

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G +E GK V  ++ +  V+  V LCNA++DM+AKCG  ++A ++F +M  R  VSW   I
Sbjct: 126 GDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAI 185

Query: 186 AGLAMHGRGLEAVALFEE 203
                 G  L ++ LF+E
Sbjct: 186 GACIQSGDILGSMQLFDE 203



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACS 224
           A  +F     RT   WT  I+G A  GR  + +  F EML  G   P+      ++  C+
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             G V+ G+     M  + G+   +     ++DM  + G+ + A      M  E + + W
Sbjct: 124 GMGDVESGKRVHGWMLRN-GVHLDVVLCNAVLDMYAKCGQFERARRVFGAMA-ERDAVSW 181

Query: 285 RTLISACCARGEL 297
              I AC   G++
Sbjct: 182 NIAIGACIQSGDI 194


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/431 (44%), Positives = 266/431 (61%), Gaps = 1/431 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G I   R  FD M +RDS+SW+A+I GYA+ G   +A+ LF +M
Sbjct: 327 NVSSWNTMITGYAQ-NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  T  + LS C ++ ALE+GK V   + K  +     + NAL+ M+ KCG++
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D A  +F  +  + +VSW ++IAG A HG G EA+ LFE M + G+ PDDV  VG+LSAC
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 505

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVDKG EYF SM  D+GI    +HY CM+D+L R+GR+ +A   ++ MP E +   
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 565

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A    G  +L E   K +   EP +   YVLLS++YA   RW    ++R  M  
Sbjct: 566 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 625

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + +E+ N+I+ F  GD  H +   IY  L+E+  KMKK GYV +T  VL D
Sbjct: 626 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 685

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+K   L  HSEKLA+AF +L  P G PIR++KNLRVC DCH+A K ISKI  R I+
Sbjct: 686 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 745

Query: 464 VRDRHRFHHFK 474
           +RD HRFHHF 
Sbjct: 746 LRDSHRFHHFN 756



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ T+   L  CA I  L LGK VHG V+K       +V N L+ MY  C G I+    V
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC-GNIDDAYIV 451

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+ + E++ VSW+ MI GYAR G   +A+ LF  M+ +G+ PD++TMV VLSAC+  G +
Sbjct: 452 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 511

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIA 186
           + G ++  S  +   +  +      +ID+  + G +D A  L ++M       +W +++ 
Sbjct: 512 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 571

Query: 187 GLAMHGR---GLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              +HG    G +A  +  EM      PD+     LLS
Sbjct: 572 ASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 604



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 22/248 (8%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   R +FD+M ERD VSW+AM+ GYA+ G   +A ++F +M     C + I+   +L+A
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAA 182

Query: 122 CTDLGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               G +E   +  ES  + ++++      N ++  + K   +  A  +F  M  R  VS
Sbjct: 183 YVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMPERDEVS 237

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSM 239
           W ++I+G A +G  LEA  LFEE      P  DV  +  ++S     G++D+ R  FD M
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEE-----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 292

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                +      +  ++    +  R+ +A E  + MP + N   W T+I+     G++  
Sbjct: 293 PEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNGDIAQ 346

Query: 300 AESITKRL 307
           A +   R+
Sbjct: 347 ARNFFDRM 354



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 116/277 (41%), Gaps = 47/277 (16%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M ERD VSW+ MI GYA+ G   +A  LF +  +     D  T   ++S    
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQ 278

Query: 125 LGALEVGKWV-ESFIEKQMVN--------------------------RSVGLCNALIDMF 157
            G L+  + V +   EK  V+                          ++V   N +I  +
Sbjct: 279 NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 338

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
           A+ GD+ +A   F  M  R  +SW ++IAG A  G G EA+ LF EM   G   +   F 
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAHEFI 272
             LS C+    ++ G++          ++      GC V      M C+ G + +A+   
Sbjct: 399 STLSTCAEIAALELGKQVHGR------VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 452

Query: 273 QKMPIEANPIIWRTLISACCARG----ELKLAESITK 305
           + +  E   + W T+I+     G     L L ES+ K
Sbjct: 453 EGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKK 488



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 118/253 (46%), Gaps = 21/253 (8%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   N ++  Y    G ++  +++FDEM  ++S+SW+ M+  Y + G   DA  LF   
Sbjct: 141 DVVSWNAMLSGYAQ-NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES- 198

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGD 162
                   +     +   C   G ++  + V++  I  +M  R     N +I  +A+ G+
Sbjct: 199 --------KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 250

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           + +A +LF     R + +WT++++G   +G   EA  +F+ M E     + V++  +++ 
Sbjct: 251 LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAG 306

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
              C  +D+ RE F++M         +  +  M+    ++G + +A  F  +MP + + I
Sbjct: 307 YVQCKRMDQARELFEAMP-----CQNVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSI 360

Query: 283 IWRTLISACCARG 295
            W  +I+     G
Sbjct: 361 SWAAIIAGYAQSG 373



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 120/281 (42%), Gaps = 65/281 (23%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           ++K+      H++N      G C+  + L    F+ M  R S+SW+AMI G     LS D
Sbjct: 49  IVKWNIAITNHMRN------GQCDSALRL----FNSMPRRSSISWNAMISGC----LSND 94

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
              L RQ+                                   EK M  R +   N +I 
Sbjct: 95  KFYLARQL----------------------------------FEK-MPTRDLVSWNVMIS 119

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDV 214
              +  ++  A  LF  M  R +VSW ++++G A +G   EA  +F+EM     P  + +
Sbjct: 120 GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-----PCKNSI 174

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
           ++ G+L+A    G ++  R  F+S K D+ +I     + CM+    +  R+ +A     +
Sbjct: 175 SWNGMLAAYVQNGRIEDARRLFES-KADWELIS----WNCMMGGYVKRNRLVDARGIFDR 229

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           MP E + + W T+IS     GEL  A+    RL    P+ +
Sbjct: 230 MP-ERDEVSWNTMISGYAQNGELLEAQ----RLFEESPVRD 265


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/471 (41%), Positives = 299/471 (63%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L ACA +  L+ GK +HG++L+  F  D  +  +LV +Y  C G I L
Sbjct: 497 GLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQC-GKILL 555

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +  FD M E++ V W+ MI G+++     DA+D+F QM  S + PDEI+++  L AC+ 
Sbjct: 556 AKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQ 615

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           + AL +GK +  F  K  +     +  +LIDM+AKCG ++++  +F  ++ +  V+W  +
Sbjct: 616 VSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVL 675

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G  +HG G +A+ LF+ M  AG  PD V F+ LL+AC+H GLV +G EY   M++ FG
Sbjct: 676 ITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFG 735

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I PK+EHY C+VDML R+GR+ EA E + ++P + +  IW +L+S+C    +L + E + 
Sbjct: 736 IKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVA 795

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +L+   P    NYVL+S+ YA+L +W++  K+R+ M + G++K  G + IE+  ++  F
Sbjct: 796 NKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRF 855

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GD+S  QS +I +   E+ +K+ K GY P TS VL ++ E++K   L  HSEKLAI+F
Sbjct: 856 LVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISF 915

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LL T  GT +R+ KNLR+C DCH+A K +SKI  REI+VRD  RFHHFK+
Sbjct: 916 GLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKN 966



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 147/311 (47%), Gaps = 12/311 (3%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEG 60
           +E  V  N+ T   VL  C         K +HG  L+  F   D  V N  V  Y  C G
Sbjct: 392 MEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKC-G 450

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF  M  +   SW+A+IGG+ + G    A+DL+  M+ SG+ PD  T+ ++LS
Sbjct: 451 SLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLS 510

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L +L  GK +   + +        +C +L+ ++ +CG +  A   F +M  + +V 
Sbjct: 511 ACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVC 570

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + +    +A+ +F +ML + + PD+++ +G L ACS    +  G+E      
Sbjct: 571 WNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKEL----- 625

Query: 241 NDFGIIPKIEHYG----CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           + F +   +  +      ++DM  + G ++++     ++ ++   + W  LI+     G 
Sbjct: 626 HCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE-VTWNVLITGYGIHGH 684

Query: 297 LKLAESITKRL 307
            + A  + K +
Sbjct: 685 GRKAIELFKSM 695



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 12/291 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   V+  CA  G++ LG   HG  LK     ++ V ++L+ MY  C G +  
Sbjct: 294 GLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKC-GYLCE 352

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACT 123
            R +FD  +E++ +SW++MIGGY++      A +L R+MQ+   V  +E+T++ VL  C 
Sbjct: 353 ARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCE 411

Query: 124 DLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           +       K +  + +    +     + NA +  +AKCG +  A  +F  M  + + SW 
Sbjct: 412 EEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWN 471

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KN 241
           ++I G   +G   +A+ L+  M  +G+ PD      LLSAC+    +  G+E   SM +N
Sbjct: 472 ALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN 531

Query: 242 DFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            F    +++ + C  +V +  + G++  A  F   M  E N + W T+I+ 
Sbjct: 532 GF----ELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 5/219 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT P V+KAC G+ D+ LG++VHG  LK +   D+ V N L+ MYG   G +E   K
Sbjct: 194 PDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKF-GFVESAVK 252

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSACTDL 125
           VFD+M +R+ VSW++++      G+  ++  LF+ +     G+ PD  TMVTV+  C   
Sbjct: 253 VFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQ 312

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G + +G        K  +   + + ++L+DM++KCG + +A  LF + N + ++SW S+I
Sbjct: 313 GEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMI 371

Query: 186 AGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSAC 223
            G +       A  L  +M +E  V  ++V  + +L  C
Sbjct: 372 GGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 8/278 (2%)

Query: 15  FVLKACAGIGDLNLGKSVHGAV-LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
            +L+ C    ++ +G+ +H  +     F +D+ +   LV MY  C+   +    VF+   
Sbjct: 98  LLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYD-SCLVFNASR 156

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
            ++   W+A++ GY R  L  DA+ +F +M  ++   PD  T+  V+ AC  +  + +G+
Sbjct: 157 RKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGE 216

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V  F  K  V   V + NALI M+ K G V+ A+K+F  M  R +VSW SV+     +G
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 193 RGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
              E+  LF+ +L  + G+ PD    V ++  C+  G V  G   F  +    G+  +++
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELK 335

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
               ++DM  + G + EA         E N I W ++I
Sbjct: 336 VNSSLLDMYSKCGYLCEARVLFDTN--EKNVISWNSMI 371


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 299/477 (62%), Gaps = 10/477 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FTYP + +A      L L       +       D  +   L+ ++  C G I   RK
Sbjct: 140 PNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVLGAALLDVFARC-GRIASCRK 198

Query: 68  VFDEMSERDSVSWSAMIGGYARL--------GLSTDAI-DLFRQMQISGVCPDEITMVTV 118
           VFD ++  D  +W+A++  YARL          + DAI ++F +M    + P+EIT+V V
Sbjct: 199 VFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAV 258

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC +LGA+  G W  ++  K+ +  +  +  AL++M+A CG +D A ++F + + R  
Sbjct: 259 IGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDT 318

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             + +++ GLA+HG G  A++LF+ M   GVP D V  + ++ AC+H GLVD+G +YFD 
Sbjct: 319 RCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDR 378

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ +FGI P IEHYGCMVDML R+GR+ +A + I  MPI  N  I+R+LI AC   G+L+
Sbjct: 379 MEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLE 438

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L + +   L+  EP    N+VL+S+ YA   RW+   K R+ M   G+ K PGS+ ++++
Sbjct: 439 LGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDIN 498

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++EF+ GDK+H  SKEIY M++++  ++ + G+  +TS  L D+ EEDK DAL+ HSE
Sbjct: 499 GVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSE 558

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y REIV+RDR RFHHF+D
Sbjct: 559 RLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRD 615



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 11/218 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC  +G ++ G   H   +K +   +  V   LV MY  C G
Sbjct: 243 MLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC-G 301

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF   S+RD+  ++AM+ G A  G    A+ LF +M   GV  D +T+++V+ 
Sbjct: 302 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMC 361

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +  S+     ++DM ++ G ++ A KL   ++G  IV
Sbjct: 362 ACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKL---IHGMPIV 418

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 419 PNAAIYRSLIRACGIHGKLELGKKMIAELMR--LEPDD 454


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 289/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ FT   VL   A   D+  G  VHG   +  F  D+ V ++L+ MY +C  
Sbjct: 161 MCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTR 220

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   KVFD +  RD + W++++ G A+ G   +A+ +FR+M  +GV P  +T  +++ 
Sbjct: 221 -TDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C +L +L  GK + +++       +V + ++LIDM+ KCG++  A  +F  M+   +VS
Sbjct: 280 VCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVS 339

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I G A+HG   EA+ LFE M      P+ + F+ +L+ACSH GLVDKG +YF SM 
Sbjct: 340 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMS 399

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +GI+P +EH+  + D L R+G + EA+ FI KM I+    +W TL+ AC       LA
Sbjct: 400 NHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 459

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + K+++  EP    ++V+LS++Y+   RW +   +RE M K+GMKK P  + IE+ ++
Sbjct: 460 EEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSK 519

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D+SH     I + L+    +M + G+VP T +V  DI EE K   L  HSEKL
Sbjct: 520 LHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKL 579

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F ++ TP GT IR++KNLRVC DCH+ TKFISK+ +REIVVRD +RFHHFKD
Sbjct: 580 AIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKD 634



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 24/332 (7%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---------------- 55
           + P  LK+CA +G   LG S+H   ++     D    N L+++Y                
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 56  ---GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112
              GS     E  RKVFDEM ERD VSW+ ++ G A  G   +A+   R+M   G  PD 
Sbjct: 112 DVPGS-STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDS 170

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            T+ TVL    +   ++ G  V  F  +   +  V + ++LIDM+A C   D ++K+F +
Sbjct: 171 FTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDN 230

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           +  R  + W S++AG A +G   EA+ +F  ML+AGV P  V F  L+  C +   +  G
Sbjct: 231 LPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFG 290

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           ++    +    G    +     ++DM C+ G +  AH    KM    + + W  +I    
Sbjct: 291 KQLHAYVICG-GFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYA 348

Query: 293 ARGELKLAESITKRL-IGN-EPMHESNYVLLS 322
             G  + A  + +R+ +GN +P H +   +L+
Sbjct: 349 LHGPAREALVLFERMELGNAKPNHITFLAVLT 380



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 29/253 (11%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVLSACTDLG----------- 126
           W+  I   A  G   DA+ LF +M+ S      +  ++   L +C  LG           
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 127 ALEVGKWVESFIEKQMVN----------RSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           A+  G + + F    ++N           S G+  A++D+       +   K+F  M  R
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGV--AIVDVPGSSTAFESVRKVFDEMIER 133

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSW +++ G A  GR  EA+    +M   G  PD      +L   + C  V +G E  
Sbjct: 134 DVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVH 193

Query: 237 D-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             + +N F     +     ++DM     R   + +    +P+  + I+W +L++ C   G
Sbjct: 194 GFAFRNGFD--SDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNG 250

Query: 296 ELKLAESITKRLI 308
            ++ A  I +R++
Sbjct: 251 SVEEALGIFRRML 263


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/506 (40%), Positives = 301/506 (59%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           GV P  FT+  + KAC    +++LGK VH   +L   F  D++V N+++ +Y  C G + 
Sbjct: 137 GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKC-GFLG 195

Query: 64  LGRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGL 92
             RKVFDEMSERD VSW+                               AM+ GYA+ G 
Sbjct: 196 CARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGR 255

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLC 150
             +A++ F++MQ  G+  DE+T+  V+SAC  LGA++   W+    E+     S  V + 
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVG 315

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM++KCG  D+A K+F  M  R + S++S+I G AMHGR   A+ LF +ML+  + 
Sbjct: 316 SALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+ V F+G+LSACSH GLV++GR+ F  M+  FG+ P  +HY CMVD+L R+G ++EA +
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ MP+E N  +W  L+ AC   G   +A+     L   EP    NY+LLS+IYA   R
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGR 495

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDN-EIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           WE+ +K+R+V+ ++G KK PG +  E  N EI++F  GD +H +S EI + L ++  +++
Sbjct: 496 WEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P       D+ +++KE  L  HSEKLA+A+ LL T  G  I+I+KN+R+C DCH+
Sbjct: 556 SHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHN 615

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
                S+I  REI+VRD  RFHHF +
Sbjct: 616 VMCAASEITGREIIVRDNMRFHHFHN 641



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 43/320 (13%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK---VFDEMSERDSVSWSAMIGG 86
           K VH  +++       +V   L+ M    +  + +G     VF +++  +   W+AMI G
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVD--VPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES---FIEKQMV 143
           YA  GL +++ + + +M+  GV P   T   +  AC     +++GK V +    I     
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI------------------ 185
           +  VG  N++ID++ KCG +  A K+F  M+ R +VSWT +I                  
Sbjct: 177 DLYVG--NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 186 -------------AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                         G A +GR  EA+  F++M + G+  D+V   G++SAC+  G V   
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 233 REYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
               D + ++ FG    +     ++DM  + G   EA++  + M  E N   + ++I   
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGY 353

Query: 292 CARGELKLAESITKRLIGNE 311
              G    A  +   ++  E
Sbjct: 354 AMHGRAHSALQLFHDMLKTE 373



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD--DIHVQNTLVHMYGSC 58
           M + G+  ++ T   V+ ACA +G +     +     +  FG   ++ V + L+ MY  C
Sbjct: 266 MQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC 325

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G  +   KVF+ M ER+  S+S+MI GYA  G +  A+ LF  M  + + P+++T + +
Sbjct: 326 -GSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384

Query: 119 LSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM---- 173
           LSAC+  G +E G+ + + +EK   V  S      ++D+  + G +++AL L ++M    
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 174 NGRTIVSWTSVIAGLAMHG 192
           NG     W +++    +HG
Sbjct: 445 NGGV---WGALLGACRIHG 460


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/506 (40%), Positives = 301/506 (59%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           GV P  FT+  + KAC    +++LGK VH   +L   F  D++V N+++ +Y  C G + 
Sbjct: 137 GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKC-GFLG 195

Query: 64  LGRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGL 92
             RKVFDEMSERD VSW+                               AM+ GYA+ G 
Sbjct: 196 CARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGR 255

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLC 150
             +A++ F++MQ  G+  DE+T+  V+SAC  LGA++   W+    E+     S  V + 
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVG 315

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM++KCG  D+A K+F  M  R + S++S+I G AMHGR   A+ LF +ML+  + 
Sbjct: 316 SALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P+ V F+G+LSACSH GLV++GR+ F  M+  FG+ P  +HY CMVD+L R+G ++EA +
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            ++ MP+E N  +W  L+ AC   G   +A+     L   EP    NY+LLS+IYA   R
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGR 495

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDN-EIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           WE+ +K+R+V+ ++G KK PG +  E  N EI++F  GD +H +S EI + L ++  +++
Sbjct: 496 WEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P       D+ +++KE  L  HSEKLA+A+ LL T  G  I+I+KN+R+C DCH+
Sbjct: 556 SHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHN 615

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
                S+I  REI+VRD  RFHHF +
Sbjct: 616 VMCAASEITGREIIVRDNMRFHHFHN 641



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 43/320 (13%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK---VFDEMSERDSVSWSAMIGG 86
           K VH  +++       +V   L+ M    +  + +G     VF +++  +   W+AMI G
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVD--VPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES---FIEKQMV 143
           YA  GL +++ + + +M+  GV P   T   +  AC     +++GK V +    I     
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI------------------ 185
           +  VG  N++ID++ KCG +  A K+F  M+ R +VSWT +I                  
Sbjct: 177 DLYVG--NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 186 -------------AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                         G A +GR  EA+  F++M + G+  D+V   G++SAC+  G V   
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 233 REYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
               D + ++ FG    +     ++DM  + G   EA++  + M  E N   + ++I   
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGY 353

Query: 292 CARGELKLAESITKRLIGNE 311
              G    A  +   ++  E
Sbjct: 354 AMHGRAHSALQLFHDMLKTE 373



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD--DIHVQNTLVHMYGSC 58
           M + G+  ++ T   V+ ACA +G +     +     +  FG   ++ V + L+ MY  C
Sbjct: 266 MQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC 325

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G  +   KVF+ M ER+  S+S+MI GYA  G +  A+ LF  M  + + P+++T + +
Sbjct: 326 -GSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384

Query: 119 LSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM---- 173
           LSAC+  G +E G+ + + +EK   V  S      ++D+  + G +++AL L ++M    
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444

Query: 174 NGRTIVSWTSVIAGLAMHG 192
           NG     W +++    +HG
Sbjct: 445 NGGV---WGALLGACRIHG 460


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 295/476 (61%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ GV P+ +T+PFV KACA +G L  G+ + G ++K  F  D H QN+L+  YG C G
Sbjct: 129 MVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKC-G 187

Query: 61  GIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
             +L R+ F++M   E+ + SWSA++  Y R G   + ++ F  M  +G  PDE +MV+ 
Sbjct: 188 EADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSA 247

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSAC  LGA +VG+ +   + +     +  +  +L+DM+AKCG ++ A  +F +M+ +  
Sbjct: 248 LSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNA 307

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +++++++GLA+HG G +A+ +F+ M+  G  PD   +VG+L+ACS  GL+++G   FD 
Sbjct: 308 WTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDR 367

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ +  + P  +HYGCMVD++ R+GR+ +A   I  MP       WR+L++AC   G L+
Sbjct: 368 MRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLE 427

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE   + L      +  +Y++LS ++A+    +     R     RG+ + PG + +E+ 
Sbjct: 428 LAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVH 487

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
              + FV  D+SH ++ +IYEML +M  +++  GY P TSE+ LD  EE+K   +  HS+
Sbjct: 488 GATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQ 547

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF LL TP G P+R+V NLR+  +CH+ +  IS+I+ REIVVRDR+RFH FK
Sbjct: 548 KLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFK 603



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 11/262 (4%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-----TDAIDLFRQMQISGVCPDEIT 114
           G +     +F  + + ++  ++ ++ GY   G         A+ LF  M   GV PD  T
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM- 173
              V  AC  LGAL+ G+ ++  + K    R     N+LI  + KCG+ D A + F  M 
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQME 200

Query: 174 -NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            + +T  SW++++A     GR  E V  F  M+ AG  PD+ + V  LSAC+H G  D G
Sbjct: 201 DDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVG 260

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R    ++  +   +        +VDM  + G ++ A      M  + N   +  ++S   
Sbjct: 261 RSIHCALLRNTARLNTFMSTS-LVDMYAKCGCIENAAAVFDAMD-DKNAWTYSAMVSGLA 318

Query: 293 ARGELKLAESITKRLI--GNEP 312
             G+ + A  +   ++  G+ P
Sbjct: 319 LHGDGRKALEVFDAMVREGHRP 340


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/505 (40%), Positives = 310/505 (61%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P+ +    +LKAC     L  G+ VH   LK     +  V+  ++ +YG C G
Sbjct: 138 MLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKC-G 196

Query: 61  GIELGRKVFDEMSE------------------------------RDSVSWSAMIGGYARL 90
            +   R+VF+EM E                              +D+V W+AMI G+ R 
Sbjct: 197 ELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
                A++ FR MQ   V P+E T+V VLSAC+ LGALE+G+WV S++ K  +  ++ + 
Sbjct: 257 EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI+M+++CG +D+A  +F  M  R ++++ ++I+GL+M+G+  +A+ LF  M+   + 
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 376

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P +V FVG+L+ACSH GLVD G + F SM  D+G+ P+IEHYGCMVD+L R GR++EA++
Sbjct: 377 PTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYD 436

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ M +  + I+  TL+SAC     L+L E + K L          YVLLSH+YA   +
Sbjct: 437 LIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGK 496

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W++  ++R  M + GM+K PG + IE++NEI+EF+ GD  H + + IYE L+E+ R ++ 
Sbjct: 497 WKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRL 556

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P    VL DI + +KE AL  HSE+LAI + L+ T P T IR++KNLRVC DCHSA
Sbjct: 557 EGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSA 616

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            K I+KI  R++VVRDR+RFH+F++
Sbjct: 617 IKLIAKITRRKVVVRDRNRFHYFEN 641



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 37/310 (11%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  +++     D  +   L+     C   I+   ++F      +   ++A+I G+   G
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHA-IDYASRIFQYTHNPNVYLYTALIDGFVSSG 126

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV--NRSVGL 149
              DAI L+ +M    + PD   M ++L AC    AL  G+ V S   K  +  NR V L
Sbjct: 127 NYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRL 186

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVS----------------------------- 180
              +++++ KCG++  A ++F  M    + S                             
Sbjct: 187 --RIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244

Query: 181 -WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            WT++I G   +     A+  F  M    V P++   V +LSACS  G ++ GR +  S 
Sbjct: 245 CWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR-WVHSY 303

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
              F I   +     +++M  R G + EA     +M  + + I + T+IS     G+ + 
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQ 362

Query: 300 AESITKRLIG 309
           A  + + +IG
Sbjct: 363 AIELFRVMIG 372


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 295/476 (61%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ GV P+ +T+PFV KACA +G L  G+ + G ++K  F  D H QN+L+  YG C G
Sbjct: 129 MVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKC-G 187

Query: 61  GIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
             +L R+ F++M   E+ + SWSA++  Y R G   + ++ F  M  +G  PDE +MV+ 
Sbjct: 188 EADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSA 247

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSAC  LGA +VG+ +   + +     +  +  +L+DM+AKCG ++ A  +F +M+ +  
Sbjct: 248 LSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNA 307

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +++++++GLA+HG G +A+ +F+ M+  G  PD   +VG+L+ACS  GL+++G   FD 
Sbjct: 308 WTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDR 367

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ +  + P  +HYGCMVD++ R+GR+ +A   I  MP       WR+L++AC   G L+
Sbjct: 368 MRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGNLE 427

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE   + L      +  +Y++LS ++A+    +     R     RG+ + PG + +E+ 
Sbjct: 428 LAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVH 487

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
              + FV  D+SH ++ +IYEML +M  +++  GY P TSE+ LD  EE+K   +  HS+
Sbjct: 488 GATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQ 547

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF LL TP G P+R+V NLR+  +CH+ +  IS+I+ REIVVRDR+RFH FK
Sbjct: 548 KLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFK 603



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           + LF  M   GV PD  T   V  AC  LGAL+ G+ ++  + K    R     N+LI  
Sbjct: 123 LRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISF 182

Query: 157 FAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           + KCG+ D A + F  M  + +T  SW++++A     GR  E V  F  M+ AG  PD+ 
Sbjct: 183 YGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDES 242

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
           + V  LSAC+H G  D GR    ++  +   +        +VDM  + G ++ A      
Sbjct: 243 SMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTS-LVDMYAKCGCIENAAAVFDA 301

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEP 312
           M  + N   +  ++S     G+ + A  +   ++  G+ P
Sbjct: 302 MD-DKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRP 340


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 311/505 (61%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M++ GV P++ +    + +C+ + ++  GKS HG VL+  F    ++ N L+ MY  C  
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHR 387

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++   + F+ M E++ VSW+ +I G  + 
Sbjct: 388 QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQG 447

Query: 91  GLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            L  +AI++F  MQ   GV  D +TM+++ SAC  LGAL++ KW+  +IEK  +   V L
Sbjct: 448 SLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              L+DMF++CGD + A+ +F S+  R + +WT+ I  +AM G    A+ LF++M+E G+
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD VAFVG L+ACSH GLV +G+E F SM    G+ P+  HYGCMVD+L R+G ++EA 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I+ MP+E N +IW +L++AC  +G +++A    +++    P    +YVLLS++YA   
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    K+R  M ++G++K PG++ I++  + +EF  GD+SH +   I  MLDE+ ++  
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRAS 747

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             G+VP  S VL+D++E++K   L++HSEKLA+A+ L+ +  GT IRIVKNLRVC+DCHS
Sbjct: 748 HLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHS 807

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
             KF SK+YNREI++RD +RFH+ +
Sbjct: 808 FAKFASKVYNREIILRDNNRFHYIR 832



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 170/321 (52%), Gaps = 33/321 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SP+K+T+PF L ACA       G  +HG ++K  +  D+ VQN+LVH Y  C G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAEC-G 183

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVL 119
            ++  RKVFDEMSER+ VSW++MI GYAR   + DA+DLF R ++   V P+ +TMV V+
Sbjct: 184 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVI 243

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  L  LE G+ V +FI    +  +  + +AL+DM+ KC  +D A +LF       + 
Sbjct: 244 SACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLD 303

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGL 228
              ++ +     G   EA+ +F  M+++GV PD ++ +  +S+CS           H  +
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYV 363

Query: 229 VDKGREYFDSMKN--------------DFGIIPKIEH-----YGCMVDMLCRSGRVKEAH 269
           +  G E +D++ N               F I  ++ +     +  +V     +G V  A 
Sbjct: 364 LRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW 423

Query: 270 EFIQKMPIEANPIIWRTLISA 290
           E  + MP E N + W T+IS 
Sbjct: 424 ETFETMP-EKNIVSWNTIISG 443



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 36/303 (11%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V+PN  T   V+ ACA + DL  G+ V+  +       +  + + LV MY  C   I++ 
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA-IDVA 290

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +++FDE    +    +AM   Y R GL+ +A+ +F  M  SGV PD I+M++ +S+C+ L
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  GK    ++ +        +CNALIDM+ KC   D A ++F  M+ +T+V+W S++
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410

Query: 186 AGLAMHGR------------------------GLEAVALFEEMLEA--------GVPPDD 213
           AG   +G                         GL   +LFEE +E         GV  D 
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           V  + + SAC H G +D  +  Y+   KN  GI   +     +VDM  R G  + A    
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIF 528

Query: 273 QKM 275
             +
Sbjct: 529 NSL 531



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVF 69
           P  LK C  I +L   K  H ++ K    +D+     LV    SCE G    +   ++VF
Sbjct: 36  PSSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVF 90

Query: 70  DEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           +      +   ++++I GYA  GL  +AI LF +M  SG+ PD+ T    LSAC    A 
Sbjct: 91  ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G  +   I K    + + + N+L+  +A+CG++D A K+F  M+ R +VSWTS+I G 
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

Query: 189 AMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           A      +AV LF  M+ +  V P+ V  V ++SAC+    ++ G + +  ++N  GI  
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEV 269

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQK 274
                  +VDM  +   +  A     +
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDE 296


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/431 (44%), Positives = 266/431 (61%), Gaps = 1/431 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G I   R  FD M +RDS+SW+A+I GYA+ G   +A+ LF +M
Sbjct: 246 NVSSWNTMITGYAQ-NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  T  + LS C ++ ALE+GK V   + K  +     + NAL+ M+ KCG++
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D A  +F  +  + +VSW ++IAG A HG G EA+ LFE M + G+ PDDV  VG+LSAC
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVDKG EYF SM  D+GI    +HY CM+D+L R+GR+ +A   ++ MP E +   
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 484

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A    G  +L E   K +   EP +   YVLLS++YA   RW    ++R  M  
Sbjct: 485 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 544

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + +E+ N+I+ F  GD  H +   IY  L+E+  KMKK GYV +T  VL D
Sbjct: 545 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 604

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+K   L  HSEKLA+AF +L  P G PIR++KNLRVC DCH+A K ISKI  R I+
Sbjct: 605 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 664

Query: 464 VRDRHRFHHFK 474
           +RD HRFHHF 
Sbjct: 665 LRDSHRFHHFN 675



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ T+   L  CA I  L LGK VHG V+K       +V N L+ MY  C G I+    V
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC-GNIDDAYIV 370

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+ + E++ VSW+ MI GYAR G   +A+ LF  M+ +G+ PD++TMV VLSAC+  G +
Sbjct: 371 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIA 186
           + G ++  S  +   +  +      +ID+  + G +D A  L ++M       +W +++ 
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490

Query: 187 GLAMHGR---GLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              +HG    G +A  +  EM      PD+     LLS
Sbjct: 491 ASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 523



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 22/248 (8%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   R +FD+M ERD VSW+AM+ GYA+ G   +A ++F +M     C + I+   +L+A
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAA 101

Query: 122 CTDLGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               G +E   +  ES  + ++++      N ++  + K   +  A  +F  M  R  VS
Sbjct: 102 YVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSM 239
           W ++I+G A +G  LEA  LFEE      P  DV  +  ++S     G++D+ R  FD M
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEE-----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                +      +  ++    +  R+ +A E  + MP + N   W T+I+     G++  
Sbjct: 212 PEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNGDIAQ 265

Query: 300 AESITKRL 307
           A +   R+
Sbjct: 266 ARNFFDRM 273



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 116/277 (41%), Gaps = 47/277 (16%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M ERD VSW+ MI GYA+ G   +A  LF +  +     D  T   ++S    
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQ 197

Query: 125 LGALEVGKWV-ESFIEKQMVN--------------------------RSVGLCNALIDMF 157
            G L+  + V +   EK  V+                          ++V   N +I  +
Sbjct: 198 NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 257

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
           A+ GD+ +A   F  M  R  +SW ++IAG A  G G EA+ LF EM   G   +   F 
Sbjct: 258 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 317

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAHEFI 272
             LS C+    ++ G++          ++      GC V      M C+ G + +A+   
Sbjct: 318 STLSTCAEIAALELGKQVHGR------VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 273 QKMPIEANPIIWRTLISACCARG----ELKLAESITK 305
           + +  E   + W T+I+     G     L L ES+ K
Sbjct: 372 EGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKK 407



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 118/253 (46%), Gaps = 21/253 (8%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   N ++  Y    G ++  +++FDEM  ++S+SW+ M+  Y + G   DA  LF   
Sbjct: 60  DVVSWNAMLSGYAQ-NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES- 117

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGD 162
                   +     +   C   G ++  + V++  I  +M  R     N +I  +A+ G+
Sbjct: 118 --------KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 169

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           + +A +LF     R + +WT++++G   +G   EA  +F+ M E     + V++  +++ 
Sbjct: 170 LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAG 225

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
              C  +D+ RE F++M         +  +  M+    ++G + +A  F  +MP + + I
Sbjct: 226 YVQCKRMDQARELFEAMP-----CQNVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSI 279

Query: 283 IWRTLISACCARG 295
            W  +I+     G
Sbjct: 280 SWAAIIAGYAQSG 292


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 308/541 (56%), Gaps = 66/541 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
           ML  G+ P++ TYPFVLK+ AG+    LG ++H  +L+     D  V+ +LV MY     
Sbjct: 170 MLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEK 229

Query: 56  -----------------------------GSCEGG-IELGRKVFDEMSERDSVSWSAMIG 85
                                        G C+ G ++   K+F  M ++++VSWS +I 
Sbjct: 230 LGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLID 289

Query: 86  GYA-------------------------------RLGLSTDAIDLFRQMQISGVCPDEIT 114
           G+A                               R G S  A+ +F +M   GV P+  T
Sbjct: 290 GFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFT 349

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +V+ LSAC  +G LE G  +  +I+   ++ +  L  AL+DM+AKCG+++ A ++F    
Sbjct: 350 IVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETE 409

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            ++I +WT +I G A+HG   +A+A F++M+ AG+ PD+V F+ LL+AC H G VD G  
Sbjct: 410 QKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLN 469

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           +FDSM+ D+ I P ++HY  +VDML RSG++KEA  FI++MP+  + +IW  L  AC A 
Sbjct: 470 FFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAH 529

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
            + K+A+    +L+  EP H  NY+ LS+ YA L +WE   ++R +M  RG+ K  G + 
Sbjct: 530 KKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSC 589

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE++ +++ FV GD  H  SK I   L+E+     K GY+P T  VL ++ +E+KED L 
Sbjct: 590 IEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLG 649

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            H EKLA+AFAL+ T PG  IRIVKNL+VC DCHS  K+ SKI  REI++RD  RFHHFK
Sbjct: 650 SHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFK 709

Query: 475 D 475
           D
Sbjct: 710 D 710



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 68/270 (25%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+    ++  +++A+I G        +AI  FR M  SG+ PD +T   VL +   L +
Sbjct: 135 VFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFS 194

Query: 128 LEVGKWV-----------ESFIEKQMVN-------------------------RSVGLCN 151
            E+G  +           +SF+   +V+                          S  L N
Sbjct: 195 TELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWN 254

Query: 152 ALIDMFAKCGDVDKALKLFRSM-----------------NG--------------RTIVS 180
            LI    K G + KA+KLF++M                 NG              + +VS
Sbjct: 255 VLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS 314

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT+++ G + +G   +A+++F +MLE GV P+    V  LSAC+  G ++ G      +K
Sbjct: 315 WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIK 374

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            D G+         +VDM  + G ++ A E
Sbjct: 375 -DNGLHLTEALGTALVDMYAKCGNIESASE 403


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/427 (44%), Positives = 275/427 (64%), Gaps = 2/427 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT+V  Y  C G I+  + +FDEM +RD +SW+AMI GYA+ G S +A+ LF +M+  G 
Sbjct: 343 NTMVTGYAQC-GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +   +   LS+C ++ ALE+GK +   + K          NAL+ M+ KCG +++A  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  +  + IVSW ++IAG A HG G EA+ALFE M +  + PDDV  VG+LSACSH GL
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGL 520

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VDKG EYF+SM  ++GI    +HY CM+D+L R+GR+ EA   ++ MP   +   W  L+
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            A    G+ +L E   +++   EP +   YVLLS++YA   RW +  ++R  M  +G+KK
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKK 640

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
           +PG + +E+ N+ + F  GD SH +++ IY  L+E+  ++KK G+V +T  VL D+ EE+
Sbjct: 641 VPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEE 700

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           KE  L  HSEKLA+AF +L  PPG PIR++KNLRVC DCH+A K ISKI  R+I+VRD +
Sbjct: 701 KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSN 760

Query: 469 RFHHFKD 475
           RFHHF +
Sbjct: 761 RFHHFSE 767



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+      L +CA I  L LGK +HG ++K  F       N L+ MYG C G IE    V
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC-GSIEEAFDV 462

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F++++E+D VSW+ MI GYAR G   +A+ LF  M+++ + PD++T+V VLSAC+  G +
Sbjct: 463 FEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLV 521

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIA 186
           + G ++  S  +   +  +      +ID+  + G +D+AL L +SM       +W +++ 
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              +HG         E++ E  + PD+     LLS
Sbjct: 582 ASRIHGDTELGEKAAEKVFE--MEPDNSGMYVLLS 614



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 26/246 (10%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R +F++M E+D VSW+AM+ G+A+ G   +A  +F QM    +  +EI+   +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLL 191

Query: 120 SACTDLGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SA    G +E   +  +S ++ ++V+      N L+  + +   +D A  LF  M  R  
Sbjct: 192 SAYVQNGRIEDARRLFDSKMDWEIVS-----WNCLMGGYVRKKRLDDARSLFDRMPVRDK 246

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFD 237
           +SW  +I G A +G   EA  LFEE+     P  DV A+  ++S     G++D+    F+
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 238 SM--KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            M  KN+         +  M+    +S ++++A E   +MP   N   W T+++     G
Sbjct: 302 EMPEKNEVS-------WNAMIAGYVQSQQIEKARELFDQMP-SRNTSSWNTMVTGYAQCG 353

Query: 296 ELKLAE 301
            +  A+
Sbjct: 354 NIDQAK 359



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 39/261 (14%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M  RD +SW+ MI GYA+ GL ++A  LF ++ I     D      ++S    
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQ 289

Query: 125 LGALE--------------------VGKWVESF-IEK------QMVNRSVGLCNALIDMF 157
            G L+                    +  +V+S  IEK      QM +R+    N ++  +
Sbjct: 290 NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGY 349

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
           A+CG++D+A  LF  M  R  +SW ++I+G A  G+  EA+ LF +M   G   +  A  
Sbjct: 350 AQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALA 409

Query: 218 GLLSACSHCGLVDKGREYFDSM-KNDF--GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
             LS+C+    ++ G++    + K  F  G I        ++ M  + G ++EA +  + 
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG----NALLAMYGKCGSIEEAFDVFED 465

Query: 275 MPIEANPIIWRTLISACCARG 295
           +  E + + W T+I+     G
Sbjct: 466 IT-EKDIVSWNTMIAGYARHG 485



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 121/259 (46%), Gaps = 19/259 (7%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N ++  Y S     +  RKVF++M +RD +SW+ M+ GY + G  + A  LF QM     
Sbjct: 95  NAMISGYLS-NNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE--- 150

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             D ++   +LS     G +E  +     I  QM+ ++    N L+  + + G ++ A +
Sbjct: 151 -KDVVSWNAMLSGFAQNGFVEEAR----KIFDQMLVKNEISWNGLLSAYVQNGRIEDARR 205

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           LF S     IVSW  ++ G     R  +A +LF+ M       D +++  +++  +  GL
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGL 261

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           + + R  F+ +      I  +  +  MV    ++G + EA    ++MP E N + W  +I
Sbjct: 262 LSEARRLFEELP-----IRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMI 315

Query: 289 SACCARGELKLAESITKRL 307
           +      +++ A  +  ++
Sbjct: 316 AGYVQSQQIEKARELFDQM 334



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 56/267 (20%)

Query: 44  DIHVQNTLVHMY---GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
           DI   N  +  Y   G CE  +     VF+ M  R +V+++AMI GY    LS +  D  
Sbjct: 59  DIVKWNRKISAYMRKGQCESAL----SVFNGMRRRSTVTYNAMISGY----LSNNKFDCA 110

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
           R+                                   + ++M +R +   N ++  + K 
Sbjct: 111 RK-----------------------------------VFEKMPDRDLISWNVMLSGYVKN 135

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G++  A  LF  M  + +VSW ++++G A +G   EA  +F++ML      +++++ GLL
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           SA    G ++  R  FDS K D+ I+     + C++    R  R+ +A     +MP+  +
Sbjct: 192 SAYVQNGRIEDARRLFDS-KMDWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 281 PIIWRTLISACCARGELKLAESITKRL 307
            I W  +I+     G L  A  + + L
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL 272



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
           +  +V+  +   N  I  + + G  + AL +F  M  R+ V++ ++I+G   + +   A 
Sbjct: 52  DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
            +FE+M +     D +++  +LS     G +   R  F+ M         +  +  M+  
Sbjct: 112 KVFEKMPD----RDLISWNVMLSGYVKNGNLSAARALFNQMPE-----KDVVSWNAMLSG 162

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
             ++G V+EA +   +M ++ N I W  L+SA    G ++ A  +
Sbjct: 163 FAQNGFVEEARKIFDQMLVK-NEISWNGLLSAYVQNGRIEDARRL 206


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/474 (40%), Positives = 289/474 (60%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+  +   +   + ACAGI  LN G+ +H       + +D+ + N LV +Y  C G
Sbjct: 507 MLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARC-G 565

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+     F+++  +DS+SW+ +I G+A+ G   DA+ +F QM  + +     T  + +S
Sbjct: 566 RIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVS 625

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  ++  ++ GK + + I K+  +  + + NALI  +AKCG ++ A + F  M  +  VS
Sbjct: 626 AAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVS 685

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG G EAV LFE+M + G  P+ V FVG+LSACSH GLV KG  YF+SM 
Sbjct: 686 WNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMS 745

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            + G++PK  HY C+VD++ R+G +  A +FI++MPIE +  IWRTL+SAC     +++ 
Sbjct: 746 KEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVG 805

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   + L+  EP   + YVLLS++YA   +W+ + + R++M  RG+KK PG + IE+ N 
Sbjct: 806 EFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNS 865

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD+ H  + +IYE L E+ +K  + GY      +L D+ +E K+  +  HSEKL
Sbjct: 866 VHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKL 925

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AI F LL      PI ++KNLRVC DCHS  KF+SKI NR I+VRD +RFHHF+
Sbjct: 926 AITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFE 979



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 187/372 (50%), Gaps = 25/372 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  T   +L ACA  G L  G+ +H  V+K     D+ V+  L+ +Y +C   I+  
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSD-IKTA 368

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++F      + V W+ M+  + +L   +++  +FRQMQI G+ P++ T  ++L  CT +
Sbjct: 369 HEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSV 428

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL++G+ + + + K     +V +C+ LIDM+AK G +D A  + R++    +VSWT++I
Sbjct: 429 GALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALI 488

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-----YFDSMK 240
           +G A H    EA+  F+EML  G+  D++ F   +SAC+    +++GR+     Y     
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I         +V +  R GR+KEA+   +K+  + + I W  LIS     G  + A
Sbjct: 549 EDLSI------GNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISGFAQSGYCEDA 601

Query: 301 ESITKRLIGNEPMHESNYVLLSHIY---AKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
             +  ++  N    E+++          A +   ++  +I  ++ KRG       + IE+
Sbjct: 602 LKVFAQM--NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGF-----DSDIEV 654

Query: 358 DNEIYEFV--CG 367
            N +  F   CG
Sbjct: 655 SNALITFYAKCG 666



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 169/322 (52%), Gaps = 9/322 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN+FTYP +L+ C  +G L+LG+ +H  V+K  F  +++V + L+ MY    G ++ 
Sbjct: 410 GLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAK-HGKLDT 468

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +   ++E D VSW+A+I GYA+  L  +A+  F++M   G+  D I   + +SAC  
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 125 LGALEVGKWV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + AL  G+ +  +S++     + S+G  NAL+ ++A+CG + +A   F  ++ +  +SW 
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIG--NALVSLYARCGRIKEAYLEFEKIDAKDSISWN 586

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            +I+G A  G   +A+ +F +M  A +      F   +SA ++   + +G++   +M   
Sbjct: 587 GLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ-IHAMIIK 645

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G    IE    ++    + G +++A     +MP E N + W  +I+     G    A +
Sbjct: 646 RGFDSDIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVSWNAMITGYSQHGYGNEAVN 704

Query: 303 ITKRL--IGNEPMHESNYVLLS 322
           + +++  +G  P H +   +LS
Sbjct: 705 LFEKMKQVGEMPNHVTFVGVLS 726



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG--IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M+E  VSP + ++  VL+AC+G  IG +   + +H  ++         + N L+ +Y   
Sbjct: 102 MIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARIICHGLLCSPIISNPLIGLYAK- 159

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G I   RKVFD +  +DSVSW AMI G+++ G   +AI LF +M  +G+ P      +V
Sbjct: 160 NGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSV 219

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LS CT +   +VG+ + + + K   +    +CNAL+ ++++  +   A K+F  M  +  
Sbjct: 220 LSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE 279

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS+ S+I+GLA  G    A+ LF +M    + PD V    LLSAC+  G + KG E   S
Sbjct: 280 VSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG-EQLHS 338

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                GI   +   G ++D+      +K AHE       E N ++W  ++ A
Sbjct: 339 YVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P  + +  VL  C  I   ++G+ +H  V K+    + +V N LV +Y      +  
Sbjct: 208 GIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVS- 266

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF +M  +D VS++++I G A+ G S  A++LF +M+   + PD +T+ ++LSAC  
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            GAL  G+ + S++ K  ++  + +  AL+D++  C D+  A ++F +     +V W  +
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           +          E+  +F +M   G+ P+   +  +L  C+  G +D G + +   +K  F
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGF 446

Query: 244 GIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
               +   Y C  ++DM  + G++  AH  ++ +  E + + W  LIS
Sbjct: 447 ----QFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALIS 489



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 16/298 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  TY ++L  C   G L   K +HG +LK  FG++  + N LV +Y +  G ++ 
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFAL-GDLDG 63

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             KVF++M  R   SW  +I G+    +S   +DLF  M    V P EI+  +VL AC+ 
Sbjct: 64  VVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS- 122

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLC-----NALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                +G      I  +++   + LC     N LI ++AK G +  A K+F ++  +  V
Sbjct: 123 --GHRIGIRYAEQIHARIICHGL-LCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G + +G   EA+ LF EM  AG+ P    F  +LS C+   L D G E   ++
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLHAL 238

Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +G    +E Y C  +V +  R      A +   KM    + + + +LIS    +G
Sbjct: 239 VFKYG--SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ-SKDEVSFNSLISGLAQQG 293



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%)

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M+  G+C +  T + +L  C + G+L   K +   I K        LCN L+D++   GD
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +D  +K+F  M  R++ SW  +I+G          + LF  M+E  V P +++F  +L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 223 CS 224
           CS
Sbjct: 121 CS 122


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/461 (42%), Positives = 293/461 (63%), Gaps = 2/461 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           V+ ACA +   ++ + VHG  +K  F   + V NTL+  Y  C G I + RKVFD M E 
Sbjct: 204 VISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKC-GEISVSRKVFDGMEET 262

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWV 134
           D  SW+++I  YA+ GLS +A  LF  M   G V  + +T+  VL AC   GAL++GK +
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
              + K  +  ++ +  +++DM+ KCG V+ A K F  +  + + SWT ++AG  MHG G
Sbjct: 323 HDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHG 382

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA+ +F EM+  G+ P+ + FV +L+ACSH GL+ +G  +F+ MK +F + P IEHY C
Sbjct: 383 KEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSC 442

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           MVD+L R+G +KEA+  IQ+M ++ + I+W +L+ AC     ++L E   ++L   +P +
Sbjct: 443 MVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSN 502

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
              YVLLS+IYA   RW+   ++R +M   G+ K PG +++E    ++ F+ GDK H Q 
Sbjct: 503 CGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQH 562

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           ++IYE LDE+  K+++ GY+P  + VL D++ E+K   L  HSEKLA+AF ++ + PG+ 
Sbjct: 563 EKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSV 622

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           I+I+KNLR+C DCH A K ISKI NREIV+RD  RFHHFKD
Sbjct: 623 IQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKD 663



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 171/343 (49%), Gaps = 27/343 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + PN+ T+P  +K+C+ + DL  GK +H     F +G DI V + L+ MY  C G
Sbjct: 77  MRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKC-G 135

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-----------SGVC 109
            +   RK+FDE+ ER+ VSW++MI GY +   + +A+ LF++  +            GV 
Sbjct: 136 YLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVG 195

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
            D + +  V+SAC  +    V + V     K+     + + N L+D +AKCG++  + K+
Sbjct: 196 VDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKV 255

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGL 228
           F  M    + SW S+IA  A +G  +EA +LF +M++ G V  + V    +L AC+H G 
Sbjct: 256 FDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGA 315

Query: 229 VDKGREYFDS---MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
           +  G+   D    M+ +  ++        +VDM C+ GRV+ A +   ++    N   W 
Sbjct: 316 LQIGKCIHDQVVKMELEDNLVVGTS----IVDMYCKCGRVEMARKAFDRLK-RKNVKSWT 370

Query: 286 TLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
            +++     G  K A  +   +I  G +P    NY+    + A
Sbjct: 371 VMVAGYGMHGHGKEAMKVFYEMIRCGIKP----NYITFVSVLA 409



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 156/384 (40%), Gaps = 67/384 (17%)

Query: 66  RKVFDEMSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           R +F +  ++ SV SW+++I  +AR G S  A+  F  M+   + P+  T    + +C+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L  GK +            + + +ALIDM++KCG ++ A KLF  +  R +VSWTS+
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 185 IAGLAMHGRGLEAVALFEEML-----------EAGVPPDDVAFVGLLSACSH-------- 225
           I+G   + R  EAV LF+E L             GV  D V    ++SAC+         
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 226 ---------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
                                      CG +   R+ FD M+        +  +  ++ +
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEE-----TDVCSWNSLIAV 273

Query: 259 LCRSGRVKEAHEFIQKM----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
             ++G   EA      M     +  N +    ++ AC   G L++ + I  +++  E   
Sbjct: 274 YAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMEL-- 331

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
           E N V+ + I     +  +    R+  D+   K +   T++         V G   H   
Sbjct: 332 EDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVM---------VAGYGMHGHG 382

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTS 398
           KE  ++  EM R   K  Y+   S
Sbjct: 383 KEAMKVFYEMIRCGIKPNYITFVS 406


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 292/475 (61%), Gaps = 14/475 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  +  F LKA A   D      +H  +++     D+ +  TL+  Y  C G +   R+V
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKC-GDLASARRV 177

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------GVCPDEITMVTVLSAC 122
           FDEMS RD  +W+A++ G A+      A+ LFR++  S         P+E+T+V  LSAC
Sbjct: 178 FDEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSAC 237

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRTIVS 180
             LGAL+ G     F        +V +CNALIDM++KCG + +AL++F S  +  RT+VS
Sbjct: 238 AQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVS 297

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + + I  L+MHG G +A+ LF+EM  A + PD+V ++ +L  C+H GLVD GR  FDSM+
Sbjct: 298 YNATIQALSMHGHGEDALKLFDEM-PARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR 356

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               + P ++HYG +VD+L R+GR+ EAH+ I  MP  A+ ++W+TL+ A    G + LA
Sbjct: 357 ----VPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLA 412

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L       + +YVLLS++YA   RW    ++R+ M    +KK+PG +  E+D  
Sbjct: 413 ELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGV 472

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F+ GDK H + +EIY  LDE+G K+ + GY P TS VL DI EE+K+ AL+ HSEKL
Sbjct: 473 MHKFINGDKEHLRWREIYRALDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKL 532

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TPPG  IR++KNLR+C DCH   K ISK Y R I++RDR RFH F+D
Sbjct: 533 AIAFGLISTPPGETIRVIKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFED 587



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+ T    L ACA +G L  G + H          ++ V N L+ MY  C G +    +
Sbjct: 225 PNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKC-GSLSRALE 283

Query: 68  VFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF   ++ +R  VS++A I   +  G   DA+ LF +M  + + PDE+T + VL  C   
Sbjct: 284 VFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMP-ARIEPDEVTYLAVLGGCNHA 342

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           G ++ G+ V    +   V  ++     ++D+  + G + +A  +   M     IV W ++
Sbjct: 343 GLVDDGRRV---FDSMRVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTL 399

Query: 185 IAGLAMHG 192
           +    MHG
Sbjct: 400 LGAAKMHG 407


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 296/473 (62%), Gaps = 2/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN+FT   +LKA       + G+ +H   LK+ +  ++HV ++L+ MY     
Sbjct: 197 MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH 256

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E  + +F+ ++ ++ VSW+A+I G+AR G     + LF QM   G  P   T  +V +
Sbjct: 257 MRE-AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFT 315

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+LE GKWV + + K        + N LIDM+AK G +  A K+FR +  + IVS
Sbjct: 316 ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS 375

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I+G A HG G EA+ LFE+ML+A V P+++ F+ +L+ACSH GL+D+G+ YF+ MK
Sbjct: 376 WNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK 435

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               I  ++ H+  +VD+L R+GR+ EA++FI++MPI+    +W  L+ +C     + L 
Sbjct: 436 KH-KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLG 494

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +++   +P     +VLLS+IYA   R     K+R++M + G+KK P  + +E++NE
Sbjct: 495 VYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENE 554

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D SH   +EI  M +++  K+K+ GYVP TS VL  +N++D+E  L  HSEKL
Sbjct: 555 VHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKL 614

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AFA+LKTPPG  IRI KN+R+C DCHSA KF S++  REI+VRD +RFHHF
Sbjct: 615 ALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHF 667



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 164/305 (53%), Gaps = 9/305 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P +  Y  +L  C  +  L  G+++H  +    F DD+ + N +++MY  C G +E  
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC-GSLEEA 159

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +FD+M  +D VSW+ +I GY++ G +++A+ LF +M   G  P+E T+ ++L A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +   G+ + +F  K   + +V + ++L+DM+A+   + +A  +F S+  + +VSW ++I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG A  G G   + LF +ML  G  P    +  + +AC+  G +++G+     +    G 
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG- 338

Query: 246 IPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----ELKLA 300
              I + G  ++DM  +SG +K+A +  +++ ++ + + W ++IS     G     L+L 
Sbjct: 339 -QPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLF 396

Query: 301 ESITK 305
           E + K
Sbjct: 397 EQMLK 401



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           P+      +L+ CT L  L+ G+ + + I+       + L N +++M+AKCG +++A  L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  + +VSWT +I+G +  G+  EA+ALF +ML  G  P++     LL A S  G  
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPS 221

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           D       +    +G    +     ++DM  R   ++EA      +  + N + W  LI+
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALIA 280

Query: 290 ACCARGELKLAESITKRLI--GNEPMH 314
               +GE +    +  +++  G EP H
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTH 307


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/474 (39%), Positives = 290/474 (61%), Gaps = 1/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML+ G+  ++      + ACAG+  L  G+ +H       F  D+  QN LV +Y  C G
Sbjct: 565  MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKC-G 623

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             IE     F++    D+++W+A++ G+ + G + +A+ +F +M   G+  +  T  + + 
Sbjct: 624  NIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVK 683

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A ++   ++ GK V + I K   +    +CNA+I M+AKCG +  A K F  ++ +  VS
Sbjct: 684  AASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS 743

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I   + HG G EA+  F++M+ + V P+ V  VG+LSACSH GLVDKG EYF+SM 
Sbjct: 744  WNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMN 803

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             ++G+ PK EHY C+VDML R+G +  A +FI +MPIE + ++WRTL+SAC     +++ 
Sbjct: 804  TEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIG 863

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  EP   + YVLLS++YA   +W+ +   R+ M ++G+KK PG + IE+ N 
Sbjct: 864  EFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 923

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+ F  GD++H  + EI+E   ++ ++  + GYV     +L ++ +E K+  +  HSEKL
Sbjct: 924  IHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKL 983

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            AI+F LL  P   PI ++KNLRVCNDCH   KF+SK+ NREI+VRD +RFHHF+
Sbjct: 984  AISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFE 1037



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 6/343 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   ++ AC+  G L  G+ +H    K  F  +  ++  L+++Y  C   IE 
Sbjct: 367 GLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKC-SDIET 425

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F E    + V W+ M+  Y  L    ++  +FRQMQI  + P++ T  ++L  C  
Sbjct: 426 ALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 485

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG LE+G+ + S I K     +  +C+ LIDM+AK G +D A  +     G+ +VSWT++
Sbjct: 486 LGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 545

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   +    +A+  F +ML+ G+  D+V     +SAC+    + +G++   +     G
Sbjct: 546 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 604

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               +     +V +  + G ++EA+   ++     N I W  L+S     G  + A  + 
Sbjct: 605 FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVF 663

Query: 305 KRLIGNEPMHESNYVLLSHIYA--KLLRWEKKTKIREVMDKRG 345
            R+   E +  +N+   S + A  +    ++  ++  V+ K G
Sbjct: 664 ARM-NREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTG 705



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+   V+PN+ T+  VL+AC  G    ++ + +H  ++    G    V N L+ +Y S  
Sbjct: 160 MVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLY-SRN 218

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++  R+VFD +  +D  SW AMI G ++     +AI LF  M + G+ P      +VL
Sbjct: 219 GFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVL 278

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  + +LE+G+ +   + K   +    +CNAL+ ++   G +  A  +F +M+ R  V
Sbjct: 279 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAV 338

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           ++ ++I GL+  G G +A+ LF+ M   G+ PD      L+ ACS  G +  G++ +  +
Sbjct: 339 TYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYT 398

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            K  F    KIE  G ++++  +   ++ A  +  +  +E N ++W  ++ A
Sbjct: 399 TKLGFASNDKIE--GALLNLYAKCSDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 147/293 (50%), Gaps = 9/293 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P  + +  VL AC  I  L +G+ +HG VLK  F  D +V N LV +Y    G
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL-G 320

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F  MS+RD+V+++ +I G ++ G    A++LF++MQ+ G+ PD  T+ +++ 
Sbjct: 321 SLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVV 380

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G L  G+ + ++  K     +  +  AL++++AKC D++ AL  F       +V 
Sbjct: 381 ACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVL 440

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W  ++    +      +  +F +M    + P+   +  +L  C   G ++ G +     +
Sbjct: 441 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 500

Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           K  F    ++  Y C  ++DM  + G++  A + + +   + + + W T+I+ 
Sbjct: 501 KTSF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 548



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 19/318 (5%)

Query: 5   GVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN  T  ++L+ C    G L+ G+ +H  +LK  F ++  +   L+  Y   +G ++
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFY-LFKGDLD 120

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              KVFDEM ER   +W+ MI   A   LS     LF +M    V P+E T   VL AC 
Sbjct: 121 GALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACR 180

Query: 124 DLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
               A +V + + + I  Q + +S  +CN LID++++ G VD+A ++F  +  +   SW 
Sbjct: 181 GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GL+ +   +EA+ LF +M   G+ P   AF  +LSAC     ++ G +        
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL------- 293

Query: 243 FGIIPKI----EHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC--CAR 294
            G++ K+    + Y C  +V +    G +  A      M  + + + + TLI+    C  
Sbjct: 294 HGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCGY 352

Query: 295 GELKLAESITKRLIGNEP 312
           GE  +      +L G EP
Sbjct: 353 GEKAMELFKRMQLDGLEP 370


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 297/480 (61%), Gaps = 5/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  + FT   VL A   + DL  G   HG ++K  F  + HV + L+ +Y  C G
Sbjct: 234 MVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAG 293

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G+   RKVF+E++  D V W+ MI G+++   LS D I  FR+MQ +G  PD+ + V V 
Sbjct: 294 GMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVT 353

Query: 120 SACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC++L +  VGK V +  I+  +    V + NAL+ M++KCG+V  A ++F +M    +
Sbjct: 354 SACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNM 413

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS  S+IAG A HG  +E++ LFE ML+  + P+ + F+ +LSAC H G V++G++YF+ 
Sbjct: 414 VSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNM 473

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  F I P+ EHY CM+D+L R+G++KEA   I+ MP     I W TL+ AC   G ++
Sbjct: 474 MKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LA       +  EP + + YV+LS++YA   RWE+   ++ +M +RG+KK PG + IE+D
Sbjct: 534 LAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEID 593

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL---DINEEDKEDALNK 415
            +++ FV  D SH   KEI+  + E+ RKMK+AGYVP     L+   ++  ++KE  L  
Sbjct: 594 KKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLY 653

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF L+ T    PI +VKNLR+C DCH+A K IS I  REI VRD HRFH FK+
Sbjct: 654 HSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKE 713



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 160/322 (49%), Gaps = 25/322 (7%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L +G+  + FT   V+ AC    D+ L + +H  V+   +     V N ++  Y S +G 
Sbjct: 135 LRFGL--DGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACY-SRKGF 189

Query: 62  IELGRKVFDEMSE---RDSVSWSAMI--GGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           +   R+VF EM E   RD VSW+AMI   G  R GL  +A++LFR+M   G+  D  TM 
Sbjct: 190 LNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGL--EAVELFREMVRRGLKVDMFTMA 247

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNG 175
           +VL+A T +  L  G      + K   + +  + + LID+++KC G + +  K+F  +  
Sbjct: 248 SVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 176 RTIVSWTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
             +V W ++I+G + +    E  +  F EM   G  PDD +FV + SACS+      G++
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ 367

Query: 235 -YFDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
            +  ++K+D   IP  ++     +V M  + G V +A      MP E N +   ++I+  
Sbjct: 368 VHALAIKSD---IPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGY 423

Query: 292 CARG----ELKLAESITKRLIG 309
              G     L+L E + ++ I 
Sbjct: 424 AQHGVEVESLRLFELMLQKDIA 445



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 39/246 (15%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------------- 58
           T+  +LKAC    DL  GK++H    K       ++ N    +Y  C             
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 59  -----------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
                               I L R+VFDE+ + D VS++ +I  YA  G    A+ LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAK 159
           +++      D  T+  V+ AC D    +VG  + +  F+     +    + NA++  +++
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGD----DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSR 186

Query: 160 CGDVDKALKLFRSM---NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
            G +++A ++FR M    GR  VSW ++I     H  GLEAV LF EM+  G+  D    
Sbjct: 187 KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTM 246

Query: 217 VGLLSA 222
             +L+A
Sbjct: 247 ASVLTA 252


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/361 (51%), Positives = 247/361 (68%)

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           M  +L AC  + ALE GK V + I K      V + N L+DM+ KCG ++ A ++F  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
              + SW ++I+GLA HG G EAV LFE+ML+ GV P+ + FV +LS CSH GLVD+GR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YFDSM  D GI PK EHY CMVD+  R+G + EA  FI +MP+E N  +W +L+ AC   
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G ++LAE   ++LI   P +   YVLLS+IYA   RW+   K+R++M  R +KK PG + 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE+ N+++ F+ GD SH Q +EIYE L+ +  +MK AGY+P T+ VL D+ EE KE  L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLAIAF ++ TPPGT IR+VKNLRVC DCH+ATKFIS+I +REIV+RD HRFHHFK
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 475 D 475
           D
Sbjct: 361 D 361



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 5/208 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ACA +  L  GK VH  ++K  F  D+ V N LV MYG C G IE  ++VF ++ E 
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKC-GRIEDAQEVFSKLLEP 62

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK-WV 134
           D  SW+AMI G A+ G   +A+ LF QM  +GV P++IT V VLS C+  G ++ G+ + 
Sbjct: 63  DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYF 122

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIAGLAMHGR 193
           +S      ++      + ++D+F + G +D+AL     M      S W S++    +HG 
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              A    E+++E  + P++     LLS
Sbjct: 183 IELAERAVEQLIE--LTPENPGTYVLLS 208


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 295/470 (62%), Gaps = 8/470 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   A   D++ GK +HG  ++     DI+V ++L+ MY  C    +  
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VF  ++ERD +SW+++I G  + GL  + +  FRQM ++ + P   +  +++ AC  L
Sbjct: 295 R-VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  +I +   + ++ + ++L+DM+AKCG++  A ++F  M  R +VSWT++I
Sbjct: 354 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG+  +A+ LFE+M   G+         +L+ACSH GLVD+  +YF+SM  DFGI
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGI 466

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P +EHY  + D+L R+GR++EA++FI  M I     IW TL+SAC     + +AE +  
Sbjct: 467 APGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVAN 526

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  +P +   Y+LL++IY+   RW++  K R  M + G++K P  + IE+ N++Y F+
Sbjct: 527 RILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFM 586

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH   ++I E ++ +   M+K GYVP TSEV  D+ EE K+  +  HSE+LAI F 
Sbjct: 587 AGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFG 646

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++ TP G  IR+ KNLRVC DCH+ATKFISKI  REIVVRD  RFHHFK+
Sbjct: 647 IINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKN 696



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 160/327 (48%), Gaps = 33/327 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+   +P VLK+CA + DLNLG+S+HG +++     D++  N L++MY     
Sbjct: 97  MLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 156

Query: 61  GIELGRK------VFDEMSER-------------------------DSVSWSAMIGGYAR 89
             E GR+      VFDEM+ER                         D VSW+ +I G AR
Sbjct: 157 LEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            GL  + + + R+M  + + PD  T+ +VL    +   +  GK +     +Q ++  + +
Sbjct: 217 NGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            ++LIDM+AKC  V  + ++F  +  R  +SW S+IAG   +G   E +  F +ML A +
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P   +F  ++ AC+H   +  G++    +  + G    I     +VDM  + G ++ A 
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAK 395

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
           +   +M +  + + W  +I  C   G+
Sbjct: 396 QIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 36/262 (13%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F+ +    +++W ++I  Y   GL   ++  F  M  SG+ PD     +VL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-------------CGDV---------- 163
            L +G+ +  +I +  ++  +   NAL++M++K              G+V          
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 164 ---------DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
                    D   K+F  M  + +VSW ++IAG A +G   E + +  EM  A + PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 215 AFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
               +L   +    + +G+E    S++   G+   I     ++DM  +  RV ++   + 
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCR-VF 297

Query: 274 KMPIEANPIIWRTLISACCARG 295
            +  E + I W ++I+ C   G
Sbjct: 298 TLLTERDGISWNSIIAGCVQNG 319


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  ++     V++AC    ++ +G SVHG +L+     D+    +LV MY    G
Sbjct: 200 MREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK-NG 258

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  +VF  M  R+ VSWSAMI G+A+ G S +A+ LFR MQ SG+ PD   +V+ L 
Sbjct: 259 LLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALL 318

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+++G L++G+ V  FI ++     + L  A IDM++KCG +  A  LF  ++ R ++ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA    HGRG +A+ LF+EM E G+ PD   F  LLSA SH GLV++G+ +F  M 
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV 437

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N F I P  +HY C+VD+L RSG V+EA + +  M  E    IW  L+S C    +L+L 
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELG 497

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           ESI   ++  +P       L+S++YA   +W+K  ++R++M   G KK+PG + IE+   
Sbjct: 498 ESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGT 557

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + FV  D+SH Q +EI   + ++  +M+K GY+P T  V  D+ EE KE  L+ HSE+L
Sbjct: 558 RHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERL 617

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I+KNLRVC DCH A K+ISKI +REIVVRD  RFHHFKD
Sbjct: 618 AIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKD 672



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 168/330 (50%), Gaps = 16/330 (4%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     P+  T+   L ACA +GDL  G+SV        + DD+ V ++L+H+Y    G 
Sbjct: 100 LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW-GA 158

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    KVF  M  RD V+WS M+ G+   G   DAI ++R+M+  GV  DE+ M+ V+ A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT    + +G  V   + +  +   V    +L+DM+AK G +D A ++F  M  R  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I+G A +G+  EA+ LF  M  +G+ PD  A V  L ACS+ G +  GR        
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSV------ 332

Query: 242 DFGIIPKIEHYGCM-----VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             G I +   + C+     +DM  + G +  A + +  M  + + I+W  +I+ C A G 
Sbjct: 333 -HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR 390

Query: 297 LKLAESITKRL--IGNEPMHESNYVLLSHI 324
            + A ++ + +   G  P H +   LLS +
Sbjct: 391 GQDALTLFQEMNETGMRPDHATFASLLSAL 420



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 3/210 (1%)

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           ++R G    A+ +FR +  +   PD  T    LSAC  LG L  G+ V            
Sbjct: 84  HSRRGSPASALRVFRALPPAAR-PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V +C++L+ ++A+ G +  A+K+F  M  R  V+W++++AG    G+ L+A+ ++  M E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV  D+V  +G++ AC+    V  G      +    G+   +     +VDM  ++G + 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGE 296
            A      M +  N + W  +IS     G+
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQ 290


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 297/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ FT   +L A A +  L  GK VHG VL+     D  +  +L+ +Y  C G
Sbjct: 328 MTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHC-G 386

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                R +FD M E+ SVSW+AMI GY++ GL  DA+ LFR++   G  P +I +V+VL 
Sbjct: 387 ESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLG 446

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+   AL +GK    +  K ++   V +  + IDM+AK G + ++  +F  +  + + S
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA   +HG G E++ LFE M + G  PD   F+G+L+ CSH GLV++G +YF+ M+
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ 566

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N  GI PK+EHY C++DML R+GR+ +A   + +MP + +  +W +L+S C   GEL++ 
Sbjct: 567 NFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIG 626

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + ++L+  EP +  NYV LS++YA   RW+   ++R+++   G++K  G + IEL  +
Sbjct: 627 QIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGK 686

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GD    QSKE+     ++ +KM K GY P TS VL D++EE K + L  HSEKL
Sbjct: 687 VHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKL 746

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F LL T  GT +RI KNLR+C DCH+A+KF+S++  REI++RD  RFHHFKD
Sbjct: 747 AICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKD 801



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           + + FT+P V+KAC G  D  LG+ +HG V+K     D+ V N L+ MYG   G ++   
Sbjct: 28  NADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKF-GFVDAAV 86

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSACTD 124
           KVF  M  R+ VSW+++I G++  G S D  D+  +M     G+ PD  T+VTVL  C  
Sbjct: 87  KVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAR 146

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              +++G  +     K  ++  V + N+L+DM++KCG + +A  LF   N +  VSW ++
Sbjct: 147 EVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTM 206

Query: 185 IAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSAC 223
           I GL   G   EA  LF EM ++  +  ++V  + +L AC
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 2/233 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+  T   VL  CA   D+ +G  +HG  +K    +D+ V N+LV MY  C G +
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKC-GYL 185

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSA 121
              + +FD+ + +++VSW+ MIGG    G   +A +LFR+MQ+   +  +E+T++ +L A
Sbjct: 186 TEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPA 245

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C ++  L   K +  +  +        + N  +  +AKCG +  A ++F SM  +T+ SW
Sbjct: 246 CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSW 305

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            ++I G A +G   +A+ L+ +M  +G+ PD      LL A +H   +  G+E
Sbjct: 306 NALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKE 358



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 9/311 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  N+ T   +L AC  I  L   K +HG  ++  F  D  V N  V  Y  C G +   
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKC-GMLICA 290

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  M  +   SW+A+IGG A+ G    A++L+ QM  SG+ PD  T+ ++L A   L
Sbjct: 291 ERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL 350

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +L  GK V  F+ +  +     +  +L+ ++  CG+   A  LF  M  ++ VSW ++I
Sbjct: 351 KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMI 410

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           +G + +G   +A+ LF +++  G  P D+A V +L ACS    +  G+E +  ++K    
Sbjct: 411 SGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK---A 467

Query: 245 IIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           ++ +     C  +DM  +SG +KE+      +    +   W  +I+A    G+ + +  +
Sbjct: 468 LLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGEESIEL 526

Query: 304 TKRL--IGNEP 312
            +R+  +G  P
Sbjct: 527 FERMRKVGQMP 537



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 10/254 (3%)

Query: 92  LSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALE--VGKWVESFIEKQMVNRSVG 148
           L +DAID+F ++   +    D  T   V+ ACT  G+L+  +G+ +   + K  +   V 
Sbjct: 10  LYSDAIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML--E 206
           + NALI M+ K G VD A+K+F  M  R +VSW S+I+G + +G   +   +  EM+  E
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            G+ PD    V +L  C+    V  G      +    G+   +     +VDM  + G + 
Sbjct: 128 EGLLPDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA     K     N + W T+I   C +G +  A ++ + +   E + E N V + +I  
Sbjct: 187 EAQMLFDKNN-RKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI-EVNEVTVLNILP 244

Query: 327 KLLRWEKKTKIREV 340
             L   +   ++E+
Sbjct: 245 ACLEISQLRSLKEL 258


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/474 (39%), Positives = 291/474 (61%), Gaps = 1/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML+ G+  ++      + ACAG+  L  G+ +H       F  D+  QN LV +Y  C G
Sbjct: 542  MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRC-G 600

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             IE     F++    D+++W+A++ G+ + G + +A+ +F +M   G+  +  T  + + 
Sbjct: 601  KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 660

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A ++   ++ GK V + I K   +    +CNALI M+AKCG +  A K F  ++ +  VS
Sbjct: 661  AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 720

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I   + HG G EA+  F++M+ + V P+ V  VG+LSACSH GLVDKG  YF+SM 
Sbjct: 721  WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 780

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +++G+ PK EHY C+VDML R+G +  A EFIQ+MPI+ + ++WRTL+SAC     +++ 
Sbjct: 781  SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 840

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  EP   + YVLLS++YA   +W+ +   R+ M ++G+KK PG + IE+ N 
Sbjct: 841  EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 900

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+ F  GD++H  + EI+E   ++ ++  + GYV     +L ++  E K+  +  HSEKL
Sbjct: 901  IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 960

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            AI+F LL  P   PI ++KNLRVCNDCH+  KF+SK+ NREI+VRD +RFHHF+
Sbjct: 961  AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1014



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   ++ AC+  G L  G+ +H    K  F  +  ++  L+++Y  C   IE 
Sbjct: 344 GLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC-ADIET 402

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F E    + V W+ M+  Y  L    ++  +FRQMQI  + P++ T  ++L  C  
Sbjct: 403 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 462

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG LE+G+ + S I K     +  +C+ LIDM+AK G +D A  +     G+ +VSWT++
Sbjct: 463 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 522

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   +    +A+  F +ML+ G+  D+V     +SAC+    + +G++   +     G
Sbjct: 523 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 581

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               +     +V +  R G+++E++   ++     N I W  L+S     G  + A  + 
Sbjct: 582 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVF 640

Query: 305 KRLIGNEPMHESNYVLLSHIYA--KLLRWEKKTKIREVMDKRG 345
            R+   E +  +N+   S + A  +    ++  ++  V+ K G
Sbjct: 641 VRM-NREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 682



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+   V+PN+ T+  VL+AC  G    ++ + +H  +L     D   V N L+ +Y S  
Sbjct: 137 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLY-SRN 195

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L R+VFD +  +D  SW AMI G ++     +AI LF  M + G+ P      +VL
Sbjct: 196 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 255

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  + +LE+G+ +   + K   +    +CNAL+ ++   G++  A  +F +M+ R  V
Sbjct: 256 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 315

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           ++ ++I GL+  G G +A+ LF+ M   G+ PD      L+ ACS  G + +G++ +  +
Sbjct: 316 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 375

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            K  F    KIE  G ++++  +   ++ A ++  +  +E N ++W  ++ A
Sbjct: 376 TKLGFASNNKIE--GALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 424



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 147/293 (50%), Gaps = 9/293 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P  + +  VL AC  I  L +G+ +HG VLK  F  D +V N LV +Y    G
Sbjct: 239 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL-G 297

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F  MS+RD+V+++ +I G ++ G    A++LF++M + G+ PD  T+ +++ 
Sbjct: 298 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 357

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G L  G+ + ++  K     +  +  AL++++AKC D++ AL  F       +V 
Sbjct: 358 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 417

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W  ++    +      +  +F +M    + P+   +  +L  C   G ++ G +     +
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477

Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           K +F    ++  Y C  ++DM  + G++  A + + +   + + + W T+I+ 
Sbjct: 478 KTNF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 525



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 19/318 (5%)

Query: 5   GVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN  T  ++L+ C    G L+ G+ +H  +LK     +  +   L   Y   +G + 
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY-LFKGDLY 97

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              KVFDEM ER   +W+ MI   A   L  +   LF +M    V P+E T   VL AC 
Sbjct: 98  GAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 157

Query: 124 DLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
               A +V + + + I  Q +  S  +CN LID++++ G VD A ++F  +  +   SW 
Sbjct: 158 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GL+ +    EA+ LF +M   G+ P   AF  +LSAC     ++ G +        
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL------- 270

Query: 243 FGIIPKI----EHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            G++ K+    + Y C  +V +    G +  A      M  + + + + TLI+     G 
Sbjct: 271 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGY 329

Query: 297 LKLAESITKR--LIGNEP 312
            + A  + KR  L G EP
Sbjct: 330 GEKAMELFKRMHLDGLEP 347


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 295/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN+FT   ++K C  +   N G+ +H    K+    ++ V ++LV MY  C G
Sbjct: 166 MLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARC-G 224

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VFD++  ++ VSW+A+I GYAR G   +A+ LF +MQ  G  P E T   +LS
Sbjct: 225 YLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLS 284

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+ +G LE GKW+ + + K        + N L+ M+AK G +  A K+F  +    +VS
Sbjct: 285 SCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVS 344

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
             S++ G A HG G EA   F+EM+  G+ P+D+ F+ +L+ACSH  L+D+G+ YF  M+
Sbjct: 345 CNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR 404

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + I PK+ HY  +VD+L R+G + +A  FI++MPIE    IW  L+ A       ++ 
Sbjct: 405 K-YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMG 463

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +R+   +P +   + LL++IYA   RWE   K+R++M   G+KK P  + +E++N 
Sbjct: 464 AYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENS 523

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H Q ++I++M +++ +K+K+ GYVP TS VLL +++++KE  L  HSEKL
Sbjct: 524 VHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKL 583

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A++FALL TPPG+ IRI+KN+RVC DCHSA K++S +  REI+VRD +RFHHF D
Sbjct: 584 ALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCD 638



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 157/271 (57%), Gaps = 4/271 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P++  Y  +LK C  +G L  GK VH  VL   F  D+ +QN+L+ MY  C G +E  
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARC-GSLEGA 128

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R++FDEM  RD VSW++MI GYA+   ++DA+ LF +M   G  P+E T+ +++  C  +
Sbjct: 129 RRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +   G+ + +   K   + +V + ++L+DM+A+CG + +A+ +F  +  +  VSW ++I
Sbjct: 189 ASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALI 248

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           AG A  G G EA+ALF  M   G  P +  +  LLS+CS  G +++G+  +   MK+   
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQK 308

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           ++  + +   ++ M  +SG +++A +   K+
Sbjct: 309 LVGYVGN--TLLHMYAKSGSIRDAEKVFDKL 337


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  ++     V++AC    ++ +G SVHG +L+     D+    +LV MY    G
Sbjct: 200 MREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK-NG 258

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  +VF  M  R+ VSWSAMI G+A+ G S +A+ LFR MQ SG+ PD   +V+ L 
Sbjct: 259 LLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALL 318

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+++G L++G+ V  FI ++     + L  A IDM++KCG +  A  LF  ++ R ++ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA    HGRG +A+ LF+EM E G+ PD   F  LLSA SH GLV++G+ +F  M 
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMV 437

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N F I P  +HY C+VD+L RSG V+EA + +  M  E    IW  L+S C    +L+L 
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELG 497

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           ESI   ++  +P       L+S++YA   +W+K  ++R++M   G KK+PG + IE+   
Sbjct: 498 ESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGT 557

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + F+  D+SH Q +EI   + ++  +M+K GY+P T  V  D+ EE KE  L+ HSEKL
Sbjct: 558 RHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKL 617

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I+KNLRVC DCH A K+ISKI +REIVVRD  RFHHFKD
Sbjct: 618 AIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKD 672



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 169/330 (51%), Gaps = 16/330 (4%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     P+  T+   L ACA +GDL  G+SV        + DD+ V ++L+H+Y    G 
Sbjct: 100 LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW-GA 158

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    KVFD M  RD V+WS M+ G+   G   DAI ++R+M+  GV  DE+ M+ V+ A
Sbjct: 159 MGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT    + +G  V   + +  +   V    +L+DM+AK G +D A ++F  M  R  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I+G A +G+  EA+ LF  M  +G+ PD  A V  L ACS+ G +  GR        
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSV------ 332

Query: 242 DFGIIPKIEHYGCM-----VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             G I +   + C+     +DM  + G +  A + +  M  + + I+W  +I+ C A G 
Sbjct: 333 -HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR 390

Query: 297 LKLAESITKRL--IGNEPMHESNYVLLSHI 324
            + A ++ + +   G  P H +   LLS +
Sbjct: 391 GQDALTLFQEMNETGMRPDHATFASLLSAL 420



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 3/210 (1%)

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           ++R G    A+ +FR +  +   PD  T    LSAC  LG L  G+ V            
Sbjct: 84  HSRRGSPASALRVFRALPPAAR-PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V +C++L+ ++A+ G +  A+K+F  M  R  V+W++++AG    G+ L+A+ ++  M E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV  D+V  +G++ AC+    V  G      +    G+   +     +VDM  ++G + 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGE 296
            A      M +  N + W  +IS     G+
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQ 290


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/475 (42%), Positives = 293/475 (61%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+PN +T+  VL AC   G L    +VH + +K     D+ V+++L+  Y    G
Sbjct: 162 MRRDGVAPNAYTFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKL-G 217

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ GR+VFDEM  RD V W+++I G+A+ G    AI+LF +M+ +G   ++ T+ +VL 
Sbjct: 218 DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLR 277

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT +  LE G+ V + + K   +R + L NAL+DM+ KCG ++ A  LF  M  R ++S
Sbjct: 278 ACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVIS 335

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++++GLA +G+ +EA+ +F+ M   GV P+ V  VG+L ACSH GLV+ G  YF SMK
Sbjct: 336 WSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMK 395

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P+ EH+ CMVD+L R+G++ EA EFI  M +E + +IWRTL+ AC       LA
Sbjct: 396 RLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLA 455

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP  +   VLLS+ YA L +W    K  + M  RGM+K PG + IEL+  
Sbjct: 456 AYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKR 515

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GD SH  S  I + L+ +  ++K  GYVP T  VL D+  E KED L  HSEK+
Sbjct: 516 VHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKM 575

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F  +    G PIRI+KNLR+C DCH+  K +SK   R IV+RD  RFHHF+D
Sbjct: 576 AIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQD 630



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 141/288 (48%), Gaps = 16/288 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAV-----LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           ++K C   G  + G+ +H  V     L       + V N+L  MY    G ++   ++FD
Sbjct: 70  LVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKF-GLLDDALRMFD 128

Query: 71  EMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
            M  R+ V+W+ ++   A   G   +A+     M+  GV P+  T  +VL ACT  G L 
Sbjct: 129 GMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLT 188

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
               V +   K  ++  V + ++LID + K GD+D   ++F  M  R +V W S+IAG A
Sbjct: 189 A---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFA 245

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPK 248
             G G+ A+ LF  M +AG   +      +L AC+   +++ GR+ +   +K D  +I  
Sbjct: 246 QSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDLIL- 304

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
              +  ++DM C+ G +++A     +MP + + I W T++S     G+
Sbjct: 305 ---HNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMVSGLAQNGK 348



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQ--MVNRSVG---LCNALIDMFAKCGDVDK 165
           D +++  ++  C   G  + G+ +   +E    + +   G   + N+L  M+AK G +D 
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLA-MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           AL++F  M  R +V+WT+V+A LA   GR  EA+     M   GV P+   F  +L AC+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             G++     +  ++K   G+   +     ++D   + G +        +M +  + ++W
Sbjct: 183 TPGMLTA--VHASTVKA--GLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM-VTRDLVVW 237

Query: 285 RTLISACCARGE 296
            ++I+     G+
Sbjct: 238 NSIIAGFAQSGD 249


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 293/471 (62%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   ++FT+  VL AC G   L+ GK +H  +++  + D+I V + L+ MY  C   ++ 
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRN-VKY 323

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF +M  ++ +SW+AM+ GY + G S +A+ +F  MQ + + PD+ T+ +V+S+C +
Sbjct: 324 AEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCAN 383

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G           +   V + NALI ++ KCG ++ A +LF  M  R  VSWT++
Sbjct: 384 LASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTAL 443

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           ++G A  G+  E ++LFE ML  G+ PD V FVG+LSACS  GLV+KG  YF+ M  +  
Sbjct: 444 VSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHR 503

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P  +HY CM+D+L R+GR++EA  FI +MP   + I W TL+S+C   G L++ +   
Sbjct: 504 ITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAA 563

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L   EP + ++Y+LLS IYA   +W+   K+R+ M + G+KK PG + I+  N+++ F
Sbjct: 564 ESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIF 623

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D+S   S +IY  L+ +  KM + GYVP  S VL D+ + +K   LN HSEKLAIAF
Sbjct: 624 SADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAF 683

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            LL  P G  IR+VKNLRVC DCH+ATK+IS+I  REI+VRD  RFH FKD
Sbjct: 684 GLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKD 734



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 169/336 (50%), Gaps = 37/336 (11%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-- 57
           ML+ G V+ N+ T+  +L   +  G ++LG+ +HG + KF +   + V + LV MY    
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 58  -----------------------------CEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
                                        C   +E   ++FD M E+DS+SW+ +I G  
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVE-AEQLFDNMPEKDSISWTTIITGLT 246

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + GL  +A+D F++M I G C D+ T  +VL+AC    AL+ GK + ++I +     ++ 
Sbjct: 247 QNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIF 306

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + +AL+DM+ KC +V  A  +FR M  + ++SWT+++ G   +G   EAV +F +M    
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PDD     ++S+C++   +++G + F       G+I  +     ++ +  + G ++ A
Sbjct: 367 IHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHA 425

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           H+   +M I  + + W  L+S     G  K  E+I+
Sbjct: 426 HQLFHEMKIR-DEVSWTALVSGYAQFG--KANETIS 458



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 42/352 (11%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
            +P  F Y  ++     +GDL   ++V   + +     ++   NTL+  Y    G ++  
Sbjct: 36  TNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ----PNLFSWNTLLSAYSKL-GYLQDM 90

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTD 124
           ++VFD M   D VSW++++ GYA  GL ++++ ++  M   G V  + IT  T+L   ++
Sbjct: 91  QRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSN 150

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV----- 179
            G +++G+ +   I K      + + + L+DM+AK G ++ A ++F  +  + IV     
Sbjct: 151 RGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTM 210

Query: 180 --------------------------SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                                     SWT++I GL  +G   EAV  F+EM   G   D 
Sbjct: 211 ITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQ 270

Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
             F  +L+AC     +D+G++ +   ++ D+     I     ++DM C+   VK A    
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ--DNIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           +KM    N I W  ++      G  + A  I   +  NE +H  ++ L S I
Sbjct: 329 RKMR-HKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE-IHPDDFTLGSVI 378



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 34/185 (18%)

Query: 138 IEKQMVNRSVGLCNALIDMFAKCGDVDKA------------------------------- 166
           I + + N    L N LI+ + K GD+  A                               
Sbjct: 31  IIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDM 90

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH 225
            ++F SM    +VSW S+++G A +G   E+V ++  ML+ G V  + + F  +L   S+
Sbjct: 91  QRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSN 150

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            G VD GR+    +   FG    +     +VDM  ++G + +A+   +++P E N +++ 
Sbjct: 151 RGFVDLGRQIHGQIFK-FGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP-EKNIVVYN 208

Query: 286 TLISA 290
           T+I+ 
Sbjct: 209 TMITG 213


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/461 (42%), Positives = 295/461 (63%), Gaps = 2/461 (0%)

Query: 16   VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            VL AC+ +    + + VHG V+K  F   I V NTL+  Y  C G   + +KVFD M E+
Sbjct: 2130 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC-GQPLVSKKVFDWMEEK 2188

Query: 76   DSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            D +SW++MI  YA+ GLS +A+++F  M +  GV  + +T+  VL AC   GAL  GK +
Sbjct: 2189 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 2248

Query: 135  ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
               + K  +  +V +  ++IDM+ KCG V+ A K F  M  + + SWT+++AG  MHGR 
Sbjct: 2249 HDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRA 2308

Query: 195  LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
             EA+ +F +M+ AGV P+ + FV +L+ACSH GLV++G  +F++MK+ + I P IEHYGC
Sbjct: 2309 KEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC 2368

Query: 255  MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
            MVD+  R+G + EA+  I++M ++ + ++W +L+ AC     + L E   ++L   +P +
Sbjct: 2369 MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDN 2428

Query: 315  ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
               YVLLS++YA   RW    ++R +M  R + K PG +L+EL   ++ F+ GDK H   
Sbjct: 2429 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHH 2488

Query: 375  KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
            + IY+ L+++  +++K GYVP  + VL D++EE+KE  L  HSEKLA+AF ++ + PGT 
Sbjct: 2489 EMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTT 2548

Query: 435  IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            I I+KNLRVC DCH+  K ISK+ +R+ VVRD  RFHHFKD
Sbjct: 2549 INIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKD 2589



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 176/310 (56%), Gaps = 30/310 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M+  G++ +KFT+PFV+KAC     ++LGK VHG+++K+ F  D+ VQN L+  Y  C  
Sbjct: 116 MVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++  R++FDE+  ++ VSW+AMI GY R 
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++LF++MQ   + P+E TMV+++ ACT++G L +G+ +  +  K  +   V L 
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            ALIDM++KCG +  A+++F +M  +++ +W S+I  L +HG G EA+ LF EM    V 
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD + F+G+L AC H   V +G  YF  M   +GI P  EHY CM ++  RS  + EA +
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415

Query: 271 FIQKMPIEAN 280
             +++   AN
Sbjct: 416 STKEVGSLAN 425



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 170/337 (50%), Gaps = 26/337 (7%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G+ P + ++P  +K+C+ + DL  G+  H     F F  D+ V + L+ MY  C G ++ 
Sbjct: 2010 GLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC-GQLKD 2068

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--------QISGVCPDEITMV 116
             R +FDE+  R+ VSW++MI GY +   + +A+ LF+            + V  D + MV
Sbjct: 2069 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 2128

Query: 117  TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +VLSAC+ +    + + V  F+ K+  + S+G+ N L+D +AKCG    + K+F  M  +
Sbjct: 2129 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 2188

Query: 177  TIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREY 235
              +SW S+IA  A  G   EA+ +F  M+   GV  + V    +L AC+H G +  G+  
Sbjct: 2189 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 2248

Query: 236  FDSMKNDFGIIPKIEHYGC----MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
             D +     I   +E+  C    ++DM C+ GRV+ A +   +M  E N   W  +++  
Sbjct: 2249 HDQV-----IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGY 2302

Query: 292  CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
               G  K A  I  +++  G +P    NY+    + A
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVKP----NYITFVSVLA 2335



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 39/313 (12%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F+L+ C     L   + +H  +++    +D  +   L+H+Y S  G I     +F ++  
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLY-STHGRIAYAILLFYQIQN 87

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
             + +W+ +I      GLS  A+ L++ M   G+  D+ T   V+ ACT+  ++++GK V
Sbjct: 88  PCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG-- 192
              + K   +  V + N LID + KCG    ALK+F  M  R +VSWT+VI+GL   G  
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 193 -----------------------------RGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
                                        +  EA+ LF+ M    + P++   V L+ AC
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 224 SHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           +  G++  GR   D ++KN   I   +     ++DM  + G +K+A E  + MP ++ P 
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEI--GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP- 324

Query: 283 IWRTLISACCARG 295
            W ++I++    G
Sbjct: 325 TWNSMITSLGVHG 337



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L   LI +++  G +  A+ LF  +      +W  +I    ++G   +A+ L++ M+  G
Sbjct: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           +  D   F  ++ AC++   +D G+    S+   +G    +     ++D   + G  + A
Sbjct: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            +  +KM +  N + W T+IS   + G+L+ A  I
Sbjct: 180 LKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRI 213



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 166  ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
            A   ++ ++   + SW SVIA LA  G  +EA+  F  + + G+ P   +F   + +CS 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 226  -CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             C LV     +  +    FG    +     ++DM  + G++K+A     ++P+  N + W
Sbjct: 2028 LCDLVSGRMSHQQAFV--FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSW 2084

Query: 285  RTLISA 290
             ++I+ 
Sbjct: 2085 TSMITG 2090


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/474 (39%), Positives = 291/474 (61%), Gaps = 1/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            ML+ G+  ++      + ACAG+  L  G+ +H       F  D+  QN LV +Y  C G
Sbjct: 582  MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRC-G 640

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             IE     F++    D+++W+A++ G+ + G + +A+ +F +M   G+  +  T  + + 
Sbjct: 641  KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A ++   ++ GK V + I K   +    +CNALI M+AKCG +  A K F  ++ +  VS
Sbjct: 701  AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I   + HG G EA+  F++M+ + V P+ V  VG+LSACSH GLVDKG  YF+SM 
Sbjct: 761  WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +++G+ PK EHY C+VDML R+G +  A EFIQ+MPI+ + ++WRTL+SAC     +++ 
Sbjct: 821  SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  EP   + YVLLS++YA   +W+ +   R+ M ++G+KK PG + IE+ N 
Sbjct: 881  EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            I+ F  GD++H  + EI+E   ++ ++  + GYV     +L ++  E K+  +  HSEKL
Sbjct: 941  IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 1000

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            AI+F LL  P   PI ++KNLRVCNDCH+  KF+SK+ NREI+VRD +RFHHF+
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 4/322 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   ++ AC+  G L  G+ +H    K  F  +  ++  L+++Y  C   IE 
Sbjct: 384 GLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC-ADIET 442

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F E    + V W+ M+  Y  L    ++  +FRQMQI  + P++ T  ++L  C  
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG LE+G+ + S I K     +  +C+ LIDM+AK G +D A  +     G+ +VSWT++
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   +    +A+  F +ML+ G+  D+V     +SAC+    + +G++   +     G
Sbjct: 563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 621

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               +     +V +  R G+++E++   ++     N I W  L+S     G  + A  + 
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVF 680

Query: 305 KRLIGNEPMHESNYVLLSHIYA 326
            R+   E +  +N+   S + A
Sbjct: 681 VRM-NREGIDNNNFTFGSAVKA 701



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M+   V+PN+ T+  VL+AC  G    ++ + +H  +L     D   V N L+ +Y S  
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLY-SRN 235

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L R+VFD +  +D  SW AMI G ++     +AI LF  M + G+ P      +VL
Sbjct: 236 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 295

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  + +LE+G+ +   + K   +    +CNAL+ ++   G++  A  +F +M+ R  V
Sbjct: 296 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           ++ ++I GL+  G G +A+ LF+ M   G+ PD      L+ ACS  G + +G++ +  +
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            K  F    KIE  G ++++  +   ++ A ++  +  +E N ++W  ++ A
Sbjct: 416 TKLGFASNNKIE--GALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P  + +  VL AC  I  L +G+ +HG VLK  F  D +V N LV +Y    G
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL-G 337

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F  MS+RD+V+++ +I G ++ G    A++LF++M + G+ PD  T+ +++ 
Sbjct: 338 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 397

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G L  G+ + ++  K     +  +  AL++++AKC D++ AL  F       +V 
Sbjct: 398 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W  ++    +      +  +F +M    + P+   +  +L  C   G ++ G +     +
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517

Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           K +F    ++  Y C  ++DM  + G++  A + + +     + + W T+I+ 
Sbjct: 518 KTNF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 565



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 19/318 (5%)

Query: 5   GVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN  T  ++L+ C    G L+ G+ +H  +LK     +  +   L   Y   +G + 
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY-LFKGDLY 137

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              KVFDEM ER   +W+ MI   A   L  +   LF +M    V P+E T   VL AC 
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 197

Query: 124 DLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
               A +V + + + I  Q +  S  +CN LID++++ G VD A ++F  +  +   SW 
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GL+ +    EA+ LF +M   G+ P   AF  +LSAC     ++ G +        
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL------- 310

Query: 243 FGIIPKI----EHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            G++ K+    + Y C  +V +    G +  A      M  + + + + TLI+     G 
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGY 369

Query: 297 LKLAESITKR--LIGNEP 312
            + A  + KR  L G EP
Sbjct: 370 GEKAMELFKRMHLDGLEP 387


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 299/477 (62%), Gaps = 3/477 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P++FTYPFV+KA + +G L  G S+H  VLK  F     V   LV MY    G
Sbjct: 100 MRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKF-G 158

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +F+ M  +D V+W+A I    + G S  A++ F +M    V  D  T+V++LS
Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG+L++G+ +     K+ +  ++ + NA +DM  KCG  + A  LF  M  R +VS
Sbjct: 219 ACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVS 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G AM+G   EA+ALF  M   G+ P+ V F+G+LSACSH GLV++G+ YF  M 
Sbjct: 279 WSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338

Query: 241 --NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             ND  + P+ EHY CMVD+L RSG ++EA+EFI+KM +E +  IW  L+ AC    ++ 
Sbjct: 339 RLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMI 398

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L + +   L+   P   S +VLLS+IYA   +W+   K+R  M K G KK+   + +E D
Sbjct: 399 LGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFD 458

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +I+ F  GD SH QSK IYE LDE+ +K++  GYVP T  V  D+  E+KE +L+ HSE
Sbjct: 459 GKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSE 518

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIAF L+    G PIR++KNLR C+DCH  +KF+S++ +REI++RD++RFHHF++
Sbjct: 519 KLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRN 575



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H  V++  F +   +   L+       G +   R+VFDEM +     W+ +  GY R
Sbjct: 28  KKIHAVVIRTGFSEKNSLLTQLLENL-VLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVR 86

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
             L  +++ L+++M+  GV PDE T   V+ A + LG L  G  + + + K        +
Sbjct: 87  NQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIV 146

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              L+ M+ K G++  A  LF SM  + +V+W + IA     G    A+  F +M    V
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAV 206

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
             D    V +LSAC   G +D G E +D  + +  I   I      +DM  + G  + A 
Sbjct: 207 QFDSFTVVSMLSACGQLGSLDIGEEIYDRARKE-EIECNIIVENARLDMHLKCGSTEAAR 265

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
                M  + N + W T+I      G+
Sbjct: 266 VLFDDMK-QRNVVSWSTMIVGYAMNGD 291


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/427 (44%), Positives = 274/427 (64%), Gaps = 2/427 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT+V  Y  C G I+  + +FDEM +RD +SW+AMI GYA+ G S +A+ LF +M+  G 
Sbjct: 343 NTMVTGYAQC-GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +   +   LS+C ++ ALE+GK +   + K          NAL+ M+ KCG +++A  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  +  + IVSW ++IAG A HG G EA+ALFE M +  + PDDV  VG+LSACSH G 
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGF 520

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VDKG EYF+SM  ++GI    +HY CM+D+L R+GR+ EA   ++ MP   +   W  L+
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            A    G+ +L E   +++   EP +   YVLLS++YA   RW +  ++R  M  +G+KK
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKK 640

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
           +PG + +E+ N+ + F  GD SH +++ IY  L+E+  ++KK G+V +T  VL D+ EE+
Sbjct: 641 VPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEE 700

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           KE  L  HSEKLA+AF +L  PPG PIR++KNLRVC DCH+A K ISKI  R+I+VRD +
Sbjct: 701 KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSN 760

Query: 469 RFHHFKD 475
           RFHHF +
Sbjct: 761 RFHHFSE 767



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+      L +CA I  L LGK +HG ++K  F       N L+ MYG C G IE    V
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC-GSIEEAFDV 462

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F++++E+D VSW+ MI GYAR G   +A+ LF  M+++ + PD++T+V VLSAC+  G +
Sbjct: 463 FEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFV 521

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIA 186
           + G ++  S  +   +  +      +ID+  + G +D+AL L +SM       +W +++ 
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              +HG         E++ E  + PD+     LLS
Sbjct: 582 ASRIHGDTELGEKAAEKVFE--MEPDNSGMYVLLS 614



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 26/246 (10%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R +F++M E+D VSW+AM+ G+A+ G   +A  +F QM    +  +EI+   +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLL 191

Query: 120 SACTDLGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SA    G +E   +  +S ++ ++V+      N L+  + +   +D A  LF  M  R  
Sbjct: 192 SAYVQNGRIEDARRLFDSKMDWEIVS-----WNCLMGGYVRKKRLDDARSLFDRMPVRDK 246

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFD 237
           +SW  +I G A +G   EA  LFEE+     P  DV A+  ++S     G++D+    F+
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 238 SM--KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            M  KN+         +  M+    +S ++++A E   +MP   N   W T+++     G
Sbjct: 302 EMPEKNEVS-------WNAMIAGYVQSQQIEKARELFDQMP-SRNTSSWNTMVTGYAQCG 353

Query: 296 ELKLAE 301
            +  A+
Sbjct: 354 NIDQAK 359



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 39/261 (14%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M  RD +SW+ MI GYA+ GL ++A  LF ++ I     D      ++S    
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQ 289

Query: 125 LGALE--------------------VGKWVESF-IEK------QMVNRSVGLCNALIDMF 157
            G L+                    +  +V+S  IEK      QM +R+    N ++  +
Sbjct: 290 NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGY 349

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
           A+CG++D+A  LF  M  R  +SW ++I+G A  G+  EA+ LF +M   G   +  A  
Sbjct: 350 AQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALA 409

Query: 218 GLLSACSHCGLVDKGREYFDSM-KNDF--GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
             LS+C+    ++ G++    + K  F  G I        ++ M  + G ++EA +  + 
Sbjct: 410 CALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG----NALLAMYGKCGSIEEAFDVFED 465

Query: 275 MPIEANPIIWRTLISACCARG 295
           +  E + + W T+I+     G
Sbjct: 466 IT-EKDIVSWNTMIAGYARHG 485



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 121/259 (46%), Gaps = 19/259 (7%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N ++  Y S     +  RKVF++M +RD +SW+ M+ GY + G  + A  LF QM     
Sbjct: 95  NAMISGYLS-NNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE--- 150

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             D ++   +LS     G +E  +     I  QM+ ++    N L+  + + G ++ A +
Sbjct: 151 -KDVVSWNAMLSGFAQNGFVEEAR----KIFDQMLVKNEISWNGLLSAYVQNGRIEDARR 205

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           LF S     IVSW  ++ G     R  +A +LF+ M       D +++  +++  +  GL
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGL 261

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           + + R  F+ +      I  +  +  MV    ++G + EA    ++MP E N + W  +I
Sbjct: 262 LSEARRLFEELP-----IRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMI 315

Query: 289 SACCARGELKLAESITKRL 307
           +      +++ A  +  ++
Sbjct: 316 AGYVQSQQIEKARELFDQM 334



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 56/267 (20%)

Query: 44  DIHVQNTLVHMY---GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
           DI   N  +  Y   G CE  +     VF+ M  R +V+++AMI GY    LS +  D  
Sbjct: 59  DIVKWNRKISAYMRKGQCESAL----SVFNGMRRRSTVTYNAMISGY----LSNNKFDCA 110

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
           R+                                   + ++M +R +   N ++  + K 
Sbjct: 111 RK-----------------------------------VFEKMPDRDLISWNVMLSGYVKN 135

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G++  A  LF  M  + +VSW ++++G A +G   EA  +F++ML      +++++ GLL
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           SA    G ++  R  FDS K D+ I+     + C++    R  R+ +A     +MP+  +
Sbjct: 192 SAYVQNGRIEDARRLFDS-KMDWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVR-D 245

Query: 281 PIIWRTLISACCARGELKLAESITKRL 307
            I W  +I+     G L  A  + + L
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL 272



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
           +  +V+  +   N  I  + + G  + AL +F  M  R+ V++ ++I+G   + +   A 
Sbjct: 52  DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
            +FE+M +     D +++  +LS     G +   R  F+ M         +  +  M+  
Sbjct: 112 KVFEKMPD----RDLISWNVMLSGYVKNGNLSAARALFNQMPE-----KDVVSWNAMLSG 162

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
             ++G V+EA +   +M ++ N I W  L+SA    G ++ A  +
Sbjct: 163 FAQNGFVEEARKIFDQMLVK-NEISWNGLLSAYVQNGRIEDARRL 206


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/478 (42%), Positives = 289/478 (60%), Gaps = 5/478 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+  G  PN+ T+  +L A + +    LGK +H  VLK     D  ++N L+  YG C G
Sbjct: 583  MMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKC-G 641

Query: 61   GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +     +F  MS+R D VSW++MI GY    L   A+D+   M   G   D  T  TVL
Sbjct: 642  DMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVL 701

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            SAC  +  LE G  V     +  +   + + +AL+DM+AKCG +D A + F  M  R + 
Sbjct: 702  SACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLY 761

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            SW S+I+G A HG G +++ LF +M   G  PD V FVG+LSACSH GLV++G  +FDSM
Sbjct: 762  SWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSM 821

Query: 240  KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC-ARG-EL 297
               +G+ P++EH+ CMVD+L R G + +  +F+ +MP++ N +IWRT++ ACC A G   
Sbjct: 822  SEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNT 881

Query: 298  KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
             L     + L+  EP +  NY+LLS++YA   +W+   K R  M K  +KK  G + + +
Sbjct: 882  ALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTM 941

Query: 358  DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
             + ++ FV GDKSH +   IYE L E+  KM+ AGY+P T   L D+  E KE+ L+ HS
Sbjct: 942  KDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHS 1001

Query: 418  EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            EK+A+AF L + P   PIRI+KNLRVC DCHSA K+IS+I  R+IV+RD +RFHHF++
Sbjct: 1002 EKIAVAFVLTR-PSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFEN 1058



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 149/295 (50%), Gaps = 15/295 (5%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT    L +CA +G +++G+ +H   LK     D+ V N L+ +YG C G ++  +K
Sbjct: 488 PSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGEC-GYVKECQK 546

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            F  M + D VSW+++IG  A    S  +A++ F  M  +G  P+ +T +T+L+A + L 
Sbjct: 547 AFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLS 606

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VSWTSVI 185
             E+GK + + + K+ V     + NAL+  + KCGD+     +F  M+ R   VSW S+I
Sbjct: 607 LHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMI 666

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-----SMK 240
           +G   +    +A+ +   M++ G   D   F  +LSAC+    +++G E         ++
Sbjct: 667 SGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLE 726

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +D  I         +VDM  + GR+  A  F + MP   N   W ++IS     G
Sbjct: 727 SDIVI------GSALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHG 774



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 166/336 (49%), Gaps = 15/336 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M+  G  PN + +  V++AC   G+  L  G  +HG + K Q+ +D+   N L+ MYG+ 
Sbjct: 165 MVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNA 224

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCPDEIT 114
            G ++  R+ FD +  R+ VS ++MI  Y + G +  A D+F  MQ      G+ P+E T
Sbjct: 225 LGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYT 284

Query: 115 MVTVLSACTDLG--ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
             +++SA   L    L + + + + +EK      + + +AL+  FAK G +  A  +F+ 
Sbjct: 285 FGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQK 344

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD-- 230
           M+ R +VS   +I GL    RG EAV LF EM ++ V  +  +++ +L+A     +++  
Sbjct: 345 MSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMIILTAFPEFHVLENG 403

Query: 231 --KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             KG E    +     +  +I     +++M  + G + +A    + M    + + W ++I
Sbjct: 404 KRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMD-NKDSVTWNSMI 462

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           +      +   A    + +   E ++ SN+ ++S +
Sbjct: 463 TGLDQNKQFLEAVKTFQEMRRTE-LYPSNFTMISAL 497



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 13/257 (5%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
            + +H  + K  F +D+ + NTL+++Y    G +  GRKVFDEM  R+ VSWS +I GY 
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARV-GDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG--ALEVGKWVESFIEKQMVNRS 146
           R  +  +A +LFR+M   G  P+     +V+ AC + G   L+ G  +   + K      
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND 210

Query: 147 VGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF---- 201
           V   N LI M+    G VD A + F S+  R +VS  S+I+     G  + A  +F    
Sbjct: 211 VTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQ 270

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIPKIEHYGCMVDM 258
           +E++  G+ P++  F  L+SA   C L + G    + +       G +  +     +V  
Sbjct: 271 KEVMGDGLKPNEYTFGSLISAT--CSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSG 328

Query: 259 LCRSGRVKEAHEFIQKM 275
             ++G +  A    QKM
Sbjct: 329 FAKAGSIGYAKNIFQKM 345



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 6/265 (2%)

Query: 29  GKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           G  VH  +++       I + N L++MY  C G I     VF  M  +DSV+W++MI G 
Sbjct: 407 GSEVHAFLIRSGLLNAQIAIGNGLINMYAKC-GAINDACVVFRLMDNKDSVTWNSMITGL 465

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            +     +A+  F++M+ + + P   TM++ LS+C  LG + VG+ +     K  ++  V
Sbjct: 466 DQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDV 525

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA-MHGRGLEAVALFEEMLE 206
            + NAL+ ++ +CG V +  K F  M     VSW S+I  LA      LEAV  F  M+ 
Sbjct: 526 SVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMR 585

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           AG  P+ V F+ +L+A S   L + G++ +   +K +      IE+   ++    + G +
Sbjct: 586 AGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIEN--ALLACYGKCGDM 643

Query: 266 KEAHEFIQKMPIEANPIIWRTLISA 290
                   +M    + + W ++IS 
Sbjct: 644 GYCENIFSRMSDRQDEVSWNSMISG 668


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 306/510 (60%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+  T   VL A   + D+ +G  VHG V+K   G D  V + ++ MYG C G
Sbjct: 231 MLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKC-G 289

Query: 61  GIELGRKVFDEMSER-----------------------------------DSVSWSAMIG 85
            ++   +VFDE+ E                                    + V+W+++I 
Sbjct: 290 CVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIA 349

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
             ++ G   +A++LFR MQ  GV P+ +T+ +++ AC ++ AL  GK +  F  ++ +  
Sbjct: 350 SCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
            V + +ALIDM+AKCG +  A + F  M+   +VSW +V+ G AMHG+  E + +F  ML
Sbjct: 410 DVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMML 469

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           ++G  PD V F  +LSAC+  GL ++G   ++SM  + GI PK+EHY C+V +L R G++
Sbjct: 470 QSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKL 529

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
           +EA+  I++MP E +  +W  L+S+C     L L E   ++L   EP +  NY+LLS+IY
Sbjct: 530 EEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIY 589

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           A    W+++ +IREVM  +G++K PG + IE+ ++++  + GD+SH Q K+I E LD++ 
Sbjct: 590 ASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLN 649

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +MKK+GY+P T+ VL D+ E+DKE  L  HSEKLA+   LL T PG P++++KNLR+C+
Sbjct: 650 MQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICD 709

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+  K IS++  REI VRD +RFHHFKD
Sbjct: 710 DCHAVIKVISRLEGREIYVRDTNRFHHFKD 739



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 158/362 (43%), Gaps = 75/362 (20%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F  P  +K+CA +  L+ G+ +H       F  D  V ++L HMY  C+  ++  RK
Sbjct: 102 PDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILD-ARK 160

Query: 68  VFDEMSERDSVSWSAMIGGYARLGL----------------------------------- 92
           +FD M +RD V WSAMI GY+RLGL                                   
Sbjct: 161 LFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGF 220

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             +A+ +FR M + G  PD  T+  VL A   L  + VG  V  ++ KQ +     + +A
Sbjct: 221 YDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSA 280

Query: 153 LIDMFAKC-------------------------------GDVDKALKLFRSMNGR----T 177
           ++DM+ KC                               G VD AL++F     +     
Sbjct: 281 MLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELN 340

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YF 236
           +V+WTS+IA  + +G+ LEA+ LF +M   GV P+ V    L+ AC +   +  G+E + 
Sbjct: 341 VVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHC 400

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S++   GI   +     ++DM  + GR++ A     KM    N + W  ++      G+
Sbjct: 401 FSLRR--GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS-ALNLVSWNAVMKGYAMHGK 457

Query: 297 LK 298
            K
Sbjct: 458 AK 459



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 2/221 (0%)

Query: 21  AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG--GIELGRKVFDEMSERDSV 78
           +    L+  +  H  +L+     D  +  +L+  Y +       +L   +   +      
Sbjct: 11  SSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLF 70

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           S+S++I  +AR       +  F  +    + PD   + + + +C  L AL+ G+ + +F 
Sbjct: 71  SFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA 130

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
                     + ++L  M+ KC  +  A KLF  M  R +V W+++IAG +  G   EA 
Sbjct: 131 AASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAK 190

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            LF EM   GV P+ V++ G+L+   + G  D+    F  M
Sbjct: 191 ELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/412 (45%), Positives = 272/412 (66%), Gaps = 3/412 (0%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +F +M ++  VSW+ MIG Y +  +  +A++L+  M+  G  PD +++ +VL AC D 
Sbjct: 264 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDT 323

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +GK +  +IE++ +  ++ L NALIDM+AKCG +D+A  +F +M  R +VSWT++I
Sbjct: 324 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMI 383

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +     GRG +AVALF +M ++G+ PD +AFV  L+ACSH GL+++GR  F  M + + I
Sbjct: 384 SAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 443

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P++EH  CMVD+L R+G+VKEA++FIQ+MP+E N  +W  L+ AC       +      
Sbjct: 444 TPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAAD 503

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L    P     YVLLS+IYAK  RWE+ T IR +M  +G+KK PG++ +E++  I+ F+
Sbjct: 504 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 563

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH QS EIY  LD + +KMK+ GYVP +   L D+ EEDKE  L  HSEKLAI FA
Sbjct: 564 VGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 623

Query: 426 LLKTP---PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           L+ T        IRI KNLR+C DCH A K IS+I +REI++RD +RFH F+
Sbjct: 624 LMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 675



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 19/226 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+  +   VL AC     L+LGK +HG + + +   ++ ++N L+ MY  C G ++ 
Sbjct: 305 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC-GCLDR 363

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF+ M  RD VSW+AMI  Y   G   DA+ LF +MQ SG+ PD I  VT L+AC+ 
Sbjct: 364 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSH 423

Query: 125 LGALEVGKW-VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NGRTIV 179
            G LE G+   +   +   +   +     ++D+  + G V +A K  + M    N R   
Sbjct: 424 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERV-- 481

Query: 180 SWTSVIAGLAMHGRG----LEAVALFEEMLEAGVPPDDVAFVGLLS 221
            W +++    +H       L A  LF+      + P+   +  LLS
Sbjct: 482 -WGALLGACRVHSNTDIGLLAADKLFQ------LAPEQSGYYVLLS 520



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 12/294 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           DL   ++VH  ++      +  +   L+  Y S +  +   RKVFDE+ ER+ +  + MI
Sbjct: 55  DLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKD-VATARKVFDEIPERNVIIINVMI 113

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
             Y   G   + I +F  M    V PD  T   VL AC+  G + +GK +     K  ++
Sbjct: 114 RSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLS 173

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            ++ + N L+ M+ KCG + +A  +   M+ R +VSW S++AG A + R  +A+ +  EM
Sbjct: 174 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREM 233

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
               +  D      LL A S+     +   Y   M    G    +  +  M+ +  ++  
Sbjct: 234 ESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAM 290

Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI-----TKRLIGN 310
             EA E    M     E + +   +++ AC     L L + I      K+LI N
Sbjct: 291 PVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPN 344


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/453 (44%), Positives = 289/453 (63%), Gaps = 6/453 (1%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGG 86
           LGK +HG  LK    D+   +N L+  YG C G ++   K+F  M+ER D+V+W++MI G
Sbjct: 535 LGKQIHGLALKNNIADEATTENALIACYGKC-GEMDGCEKIFSRMAERRDNVTWNSMISG 593

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           Y    L   A+DL   M  +G   D     TVLSA   +  LE G  V +   +  +   
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-L 205
           V + +AL+DM++KCG +D AL+ F +M  R   SW S+I+G A HG+G EA+ LFE M L
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKL 713

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +   PPD V FVG+LSACSH GL+++G ++F+SM + +G+ P+IEH+ CM D+L R+G +
Sbjct: 714 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGEL 773

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACC-ARG-ELKLAESITKRLIGNEPMHESNYVLLSH 323
            +  +FI+KMP++ N +IWRT++ ACC A G + +L +   + L   EP +  NYVLL +
Sbjct: 774 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 833

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +YA   RWE   K R+ M    +KK  G + + + + ++ FV GDKSH  +  IY+ L E
Sbjct: 834 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 893

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT-PIRIVKNLR 442
           + RKM+ AGYVP T   L D+ +E+KE+ L+ HSEKLA+AF L      T PIRI+KNLR
Sbjct: 894 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 953

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           VC DCHSA K+ISKI  R+I++RD +RFHHF+D
Sbjct: 954 VCGDCHSAFKYISKIEGRQIILRDSNRFHHFQD 986



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 151/325 (46%), Gaps = 11/325 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  + + P  FT    L +CA +    LG+ +HG  LK     ++ V N L+ +Y    G
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE-TG 464

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVL 119
            +   RK+F  M E D VSW+++IG  AR   S  +A+  F   Q +G   + IT  +VL
Sbjct: 465 YLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVL 524

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTI 178
           SA + L   E+GK +     K  +       NALI  + KCG++D   K+F  M   R  
Sbjct: 525 SAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDN 584

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W S+I+G   +    +A+ L   ML+ G   D   +  +LSA +    +++G E   +
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGME-VHA 643

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-- 296
                 +   +     +VDM  + GR+  A  F   MP+  N   W ++IS     G+  
Sbjct: 644 CSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGYARHGQGE 702

Query: 297 --LKLAESITKRLIGNEPMHESNYV 319
             LKL E  T +L G  P     +V
Sbjct: 703 EALKLFE--TMKLDGQTPPDHVTFV 725



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 137/268 (51%), Gaps = 6/268 (2%)

Query: 26  LNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           L  G+ VHG V+     D  + + N LV+MY  C G I   R+VF  M+++DSVSW++MI
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC-GSIADARRVFYFMTDKDSVSWNSMI 387

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
            G  + G   +A++ ++ M+   + P   T+++ LS+C  L   ++G+ +     K  ++
Sbjct: 388 TGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGID 447

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-EAVALFEE 203
            +V + NAL+ ++A+ G +++  K+F SM     VSW S+I  LA   R L EAV  F  
Sbjct: 448 LNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLN 507

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRS 262
              AG   + + F  +LSA S     + G++    ++KN+       E+   ++    + 
Sbjct: 508 AQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKC 565

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISA 290
           G +    +   +M    + + W ++IS 
Sbjct: 566 GEMDGCEKIFSRMAERRDNVTWNSMISG 593



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 144/301 (47%), Gaps = 15/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNL--GKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M++ G+  N++ +  VL+AC  IG + +  G+ +HG + K  +  D  V N L+ MY  C
Sbjct: 93  MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +      F ++  ++SVSW+++I  Y++ G    A  +F  MQ  G  P E T  ++
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212

Query: 119 LSACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           ++    L   +V   + +   I+K  +   + + + L+  FAK G +  A K+F  M  R
Sbjct: 213 VTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR 272

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVD----- 230
             V+   ++ GL     G EA  LF +M     V P+  ++V LLS+     L +     
Sbjct: 273 NAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLK 330

Query: 231 KGREYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           KGRE    +    G++  +   G  +V+M  + G + +A      M  + + + W ++I+
Sbjct: 331 KGREVHGHVITT-GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMIT 388

Query: 290 A 290
            
Sbjct: 389 G 389



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G   + F Y  VL A A +  L  G  VH   ++     D+ V + LV MY  C G
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC-G 668

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            ++   + F+ M  R+S SW++MI GYAR G   +A+ LF  M++ G   PD +T V VL
Sbjct: 669 RLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVL 728

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
           SAC+  G LE G K  ES  +   +   +   + + D+  + G++DK       M  +  
Sbjct: 729 SACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPN 788

Query: 178 IVSWTSVI-AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           ++ W +V+ A    +GR  E      EML    P + V +V L
Sbjct: 789 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLL 831



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 46/348 (13%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +G     +  H  + K +   D+++ N L++ Y      +   RKVFDEM  R+ VSW+ 
Sbjct: 14  VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVS-ARKVFDEMPLRNCVSWAC 72

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV--GKWVESFIEK 140
           ++ GY+R G   +A+   R M   G+  ++   V+VL AC ++G++ +  G+ +   + K
Sbjct: 73  IVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFK 132

Query: 141 QMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
                   + N LI M+ KC G V  AL  F  +  +  VSW S+I+  +  G    A  
Sbjct: 133 LSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFR 192

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           +F  M   G  P +  F  L++  + C L +      +       I+  I+  G + D+ 
Sbjct: 193 IFSSMQYDGSRPTEYTFGSLVT--TACSLTEPDVRLLEQ------IMCTIQKSGLLTDLF 244

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
             SG                       L+SA    G L  A  +  +      M   N V
Sbjct: 245 VGSG-----------------------LVSAFAKSGSLSYARKVFNQ------METRNAV 275

Query: 320 LLSHIYAKLLR--W-EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            L+ +   L+R  W E+ TK+   MD   M  +   + + L +   E+
Sbjct: 276 TLNGLMVGLVRQKWGEEATKL--FMDMNSMIDVSPESYVILLSSFPEY 321


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/461 (42%), Positives = 295/461 (63%), Gaps = 2/461 (0%)

Query: 16   VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            VL AC+ +    + + VHG V+K  F   I V NTL+  Y  C G   + +KVFD M E+
Sbjct: 1257 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC-GQPLVSKKVFDWMEEK 1315

Query: 76   DSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWV 134
            D +SW++MI  YA+ GLS +A+++F  M +  GV  + +T+  VL AC   GAL  GK +
Sbjct: 1316 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 1375

Query: 135  ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
               + K  +  +V +  ++IDM+ KCG V+ A K F  M  + + SWT+++AG  MHGR 
Sbjct: 1376 HDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRA 1435

Query: 195  LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
             EA+ +F +M+ AGV P+ + FV +L+ACSH GLV++G  +F++MK+ + I P IEHYGC
Sbjct: 1436 KEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC 1495

Query: 255  MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
            MVD+  R+G + EA+  I++M ++ + ++W +L+ AC     + L E   ++L   +P +
Sbjct: 1496 MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDN 1555

Query: 315  ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
               YVLLS++YA   RW    ++R +M  R + K PG +L+EL   ++ F+ GDK H   
Sbjct: 1556 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHH 1615

Query: 375  KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
            + IY+ L+++  +++K GYVP  + VL D++EE+KE  L  HSEKLA+AF ++ + PGT 
Sbjct: 1616 EMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTT 1675

Query: 435  IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            I I+KNLRVC DCH+  K ISK+ +R+ VVRD  RFHHFKD
Sbjct: 1676 INIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKD 1716



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 176/310 (56%), Gaps = 30/310 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M+  G++ +KFT+PFV+KAC     ++LGK VHG+++K+ F  D+ VQN L+  Y  C  
Sbjct: 116 MVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++  R++FDE+  ++ VSW+AMI GY R 
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A++LF++MQ   + P+E TMV+++ ACT++G L +G+ +  +  K  +   V L 
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            ALIDM++KCG +  A+++F +M  +++ +W S+I  L +HG G EA+ LF EM    V 
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD + F+G+L AC H   V +G  YF  M   +GI P  EHY CM ++  RS  + EA +
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415

Query: 271 FIQKMPIEAN 280
             +++   AN
Sbjct: 416 STKEVGSLAN 425



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 170/337 (50%), Gaps = 26/337 (7%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G+ P + ++P  +K+C+ + DL  G+  H     F F  D+ V + L+ MY  C G ++ 
Sbjct: 1137 GLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC-GQLKD 1195

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--------QISGVCPDEITMV 116
             R +FDE+  R+ VSW++MI GY +   + +A+ LF+            + V  D + MV
Sbjct: 1196 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 1255

Query: 117  TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +VLSAC+ +    + + V  F+ K+  + S+G+ N L+D +AKCG    + K+F  M  +
Sbjct: 1256 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 1315

Query: 177  TIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREY 235
              +SW S+IA  A  G   EA+ +F  M+   GV  + V    +L AC+H G +  G+  
Sbjct: 1316 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 1375

Query: 236  FDSMKNDFGIIPKIEHYGC----MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
             D +     I   +E+  C    ++DM C+ GRV+ A +   +M  E N   W  +++  
Sbjct: 1376 HDQV-----IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGY 1429

Query: 292  CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
               G  K A  I  +++  G +P    NY+    + A
Sbjct: 1430 GMHGRAKEALDIFYKMVRAGVKP----NYITFVSVLA 1462



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 39/313 (12%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F+L+ C     L   + +H  +++    +D  +   L+H+Y S  G I     +F ++  
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLY-STHGRIAYAILLFYQIQN 87

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
             + +W+ +I      GLS  A+ L++ M   G+  D+ T   V+ ACT+  ++++GK V
Sbjct: 88  PCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVV 147

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG-- 192
              + K   +  V + N LID + KCG    ALK+F  M  R +VSWT+VI+GL   G  
Sbjct: 148 HGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 193 -----------------------------RGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
                                        +  EA+ LF+ M    + P++   V L+ AC
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 224 SHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           +  G++  GR   D ++KN   I   +     ++DM  + G +K+A E  + MP ++ P 
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEI--GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP- 324

Query: 283 IWRTLISACCARG 295
            W ++I++    G
Sbjct: 325 TWNSMITSLGVHG 337



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L   LI +++  G +  A+ LF  +      +W  +I    ++G   +A+ L++ M+  G
Sbjct: 61  LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG 120

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           +  D   F  ++ AC++   +D G+    S+   +G    +     ++D   + G  + A
Sbjct: 121 IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            +  +KM +  N + W T+IS   + G+L+ A  I
Sbjct: 180 LKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRI 213



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 166  ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
            A   ++ ++   + SW SVIA LA  G  +EA+  F  + + G+ P   +F   + +CS 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 226  -CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             C LV     +  +    FG    +     ++DM  + G++K+A     ++P+  N + W
Sbjct: 1155 LCDLVSGRMSHQQAFV--FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSW 1211

Query: 285  RTLISA 290
             ++I+ 
Sbjct: 1212 TSMITG 1217


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/500 (38%), Positives = 304/500 (60%), Gaps = 35/500 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSC 58
           ML  GV P++      L AC+ + +L  G+ +H  V K   Q  D + V  TL+ MY  C
Sbjct: 226 MLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVV--TLIDMYAKC 283

Query: 59  E-------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGY 87
                                           G +++ R +FD+M  RD +++++MI GY
Sbjct: 284 GDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGY 343

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
              G   DA+ LF Q++  G+  D  T+V++L+AC  LGAL  G+ + + IE+++V   V
Sbjct: 344 IHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDV 403

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            L  AL+DM+ KCG VD+A  +F  M  R + +W+++IAGLA +G G++A+  F +M   
Sbjct: 404 YLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRD 463

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G  P  V ++ +L+ACSH  L+++GR++F+ M++   + P+IEHYGCM+D+L RSG + E
Sbjct: 464 GFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDE 523

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A   +Q MP++ N +IW +++SAC     + LA    + L+   P  ++ YV L +IY  
Sbjct: 524 AMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYID 583

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
             +W +  +IR +M+++G+KK  G + I +  ++++FV  D+SH  + EI  M++E+ R+
Sbjct: 584 SRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARR 643

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           +K AGY P TS + +D++EE+KE AL  HSEK+AIAF L+  PP  PI I+KNLRVC DC
Sbjct: 644 LKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDC 703

Query: 448 HSATKFISKIYNREIVVRDR 467
           HSA K IS+++NREI+VRDR
Sbjct: 704 HSAIKLISQLWNREIIVRDR 723



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 151/351 (43%), Gaps = 67/351 (19%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH-VQNTLVHMYGSCEGGIELGRK 67
           + FT+ FV + CA      L + +H A L+         V N L+HMY S  G  +  R+
Sbjct: 101 SAFTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASL-GLTDDARR 159

Query: 68  VFDEMS-------------------------------ERDSVSWSAMIGGYARLGLSTDA 96
            FDE+                                ER+ VSW+++I GY+R G   DA
Sbjct: 160 AFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADA 219

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           +  F  M   GV PDE+ ++  LSAC+ L  LE G+ +   + K+ +  +  L   LIDM
Sbjct: 220 VYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDM 279

Query: 157 FAKCGD--------------------------------VDKALKLFRSMNGRTIVSWTSV 184
           +AKCGD                                VD A  LF  M  R ++++ S+
Sbjct: 280 YAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSM 339

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G    GR  +A+ LF ++   G+  D+   V LL+AC+  G + +GR    S++    
Sbjct: 340 ITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI- 398

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +   +     +VDM  + GRV EA     +M  E +   W  +I+     G
Sbjct: 399 VEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERDVHTWSAMIAGLAFNG 448


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/479 (41%), Positives = 299/479 (62%), Gaps = 10/479 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN FTYP + +A      L L       +       D  +   L+ ++  C G I   
Sbjct: 119 LRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFARC-GRIASC 177

Query: 66  RKVFDEMSERDSVSWSAMIGGYARL-----GLSTDAID----LFRQMQISGVCPDEITMV 116
           R+VFD ++  D  +W+A++  YARL       +T A D    LF +M    + P+EIT+V
Sbjct: 178 RRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLV 237

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            V+ AC +LGA+  G W  ++  K+ +  +  +  AL++M+A CG +D A ++F + + R
Sbjct: 238 AVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDR 297

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
               + +++ GLA+HG G  A++L + M  AGVP D V  + ++ AC+H GLVD+G +YF
Sbjct: 298 DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYF 357

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D M+ +FGI P+IEHYGCM+DML R+GR+  A + I +M I  N  I+R+LI AC   G+
Sbjct: 358 DRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGK 417

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           L+L E +   L+  EP    N+VL+S+ YA+  RWE   K R+ M   G+ K PGS+L++
Sbjct: 418 LELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVD 477

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++  ++EF+ GDK+H  SKEIY M++E+  ++ + G   +TS  L D+ EEDK D L+ H
Sbjct: 478 INGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYH 537

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y REIV+RDR RFHHF+D
Sbjct: 538 SERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRD 596



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 11/218 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC  +G ++ G   H   +K +   +  V   LV MY  C G
Sbjct: 224 MLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC-G 282

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF   S+RD+  ++AM+ G A  G    A+ L  +M  +GV  D +T+++V+ 
Sbjct: 283 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 342

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +   +     +IDM ++ G ++ A KL   M    IV
Sbjct: 343 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEM---LIV 399

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 400 PNAAIYRSLIRACGIHGKLELGEKMIAELMR--LEPDD 435


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 298/475 (62%), Gaps = 2/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   GV P+ +T   ++ ACA    L+ G+ VH  V+K   G ++ V N L++MY  C G
Sbjct: 663  MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKC-G 721

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R VF ++  +D VSW+ MIGGY++  L  +A++LF  MQ     PD+ITM  VL 
Sbjct: 722  SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLP 780

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC  L AL+ G+ +   I ++     + +  AL+DM+AKCG +  A  LF  +  + ++S
Sbjct: 781  ACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 840

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WT +IAG  MHG G EA++ F EM  AG+ PD+ +F  +L+ACSH GL+++G ++F+SM+
Sbjct: 841  WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMR 900

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            N+ G+ PK+EHY C+VD+L R G + +A++FI+ MPI+ +  IW  L+S C    ++KLA
Sbjct: 901  NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 960

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E + + +   EP +   YV+L+++YA+  +WE+  K+R+ M KRG K+ PG + IE+  +
Sbjct: 961  EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 1020

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
               FV G+  H Q+K I  +L ++  +M+   Y      VL++ ++ +KE     HSEK 
Sbjct: 1021 FNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKS 1080

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            A+AF +L  PPG  +R+ KN RVC DCH   KF+SK   REIV+RD +RFHHFKD
Sbjct: 1081 AMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKD 1135



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 160/289 (55%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  N +T+  VLK  A +G +   K VHG VLK  FG +  V N+L+  Y    G
Sbjct: 461 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKF-G 519

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+E    +FDE+SE D VSW++MI G    G S + +++F QM I GV  D  T+V+VL 
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  ++G L +G+ +  F  K   +  V   N L+DM++KCG+++ A ++F  M   TIVS
Sbjct: 580 AWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 639

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           WTS IA     G   +A+ LF+EM   GV PD      ++ AC+    +DKGR+     +
Sbjct: 640 WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           KN  G    +     +++M  + G V+EA     K+P++ + + W T+I
Sbjct: 700 KNGMG--SNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMI 745



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 174/334 (52%), Gaps = 26/334 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV  +  T   VL A A IG+L+LG+++HG  +K  F +++   NTL+ MY  C G
Sbjct: 562 MLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC-G 620

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF +M +   VSW++ I  Y R GL +DAI LF +MQ  GV PD  T+ +++ 
Sbjct: 621 NLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVH 680

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    +L+ G+ V S++ K  +  ++ + NALI+M+AKCG V++A  +F  +  + IVS
Sbjct: 681 ACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS 740

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE------ 234
           W ++I G + +    EA+ LF +M +    PDD+    +L AC+    +DKGRE      
Sbjct: 741 WNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHIL 799

Query: 235 ---YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              YF  +           H  C +VDM  + G +  A      +P + + I W  +I+ 
Sbjct: 800 RRGYFSDL-----------HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAG 847

Query: 291 CCARGELKLAESITK--RLIGNEPMHESNYVLLS 322
               G    A S     R+ G EP   S  V+L+
Sbjct: 848 YGMHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +Y  VL+ CA    L  GK VH  ++      D  +   LV MY +C G +  GRK+FD+
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNC-GDLVQGRKIFDK 429

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +       W+ ++  YA++G   +++ LF++MQ  GV  +  T   VL     LG ++  
Sbjct: 430 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K V  ++ K     +  + N+LI  + K G V+ A  LF  ++   +VSW S+I G  ++
Sbjct: 490 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 549

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP---- 247
           G     + +F +ML  GV  D    V +L A ++ G +  GR       + FG+      
Sbjct: 550 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRAL-----HGFGVKACFSE 604

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           ++     ++DM  + G +  A E   KM  +   + W + I+A    G
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSTIAAYVREG 651


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 294/505 (58%), Gaps = 34/505 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMY---GS 57
           GV  ++ TY  V+ ACA  G   LGK VH  +LK +   D    + V NTL+ +Y   G 
Sbjct: 284 GVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGK 343

Query: 58  CEGG---------------------------IELGRKVFDEMSERDSVSWSAMIGGYARL 90
            +G                            +E  +  F +M E++ ++W+ MI G A+ 
Sbjct: 344 VDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQN 403

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G    A+ LF QM++ G  P++      ++AC+ LGALE G+ + + I     + ++ + 
Sbjct: 404 GFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVG 463

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NA+I M+A+CG V+ A  +F +M     VSW S+IA L  HG G++A+ L+E+ML+ G+ 
Sbjct: 464 NAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGIL 523

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD   F+ +LSACSH GLV++G  YF+SM  ++GI P  +HY  M+D+ CR+G+  +A  
Sbjct: 524 PDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKN 583

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I  MP EA   IW  L++ C   G + L     ++L    P H+  YVLLS++YA L R
Sbjct: 584 VIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGR 643

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W    + R++M  RG+KK P  +  E++N+++ F+  D  H +   IY  L+++  +MKK
Sbjct: 644 WNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKK 703

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY+P T  VL D+  E KE AL+ HSEKLA+AF L+K P G  +R+ KNLR+C DCH+A
Sbjct: 704 IGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNA 763

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            KF+SK+  REIVVRD  RFHHFK+
Sbjct: 764 IKFMSKVVGREIVVRDGKRFHHFKN 788



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 159/366 (43%), Gaps = 81/366 (22%)

Query: 7   SPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
            P+ FT+  VL A   I  D      +HG V+KF       V N L+ +Y  C       
Sbjct: 144 QPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVS 203

Query: 59  --------------------------------EGGIELGRKVFDEMSERDSVSWSAMIGG 86
                                            G +   R++ D M+E+  ++W+AMI G
Sbjct: 204 SSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISG 263

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR- 145
           Y   GL  DA+ LFR+M++ GV  DE T  +V+SAC D G   +GK V ++I K  +N  
Sbjct: 264 YLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPD 323

Query: 146 -----SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV--------------------- 179
                SVG  N LI ++ K G VD A K+F  M  + I+                     
Sbjct: 324 RDFLLSVG--NTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSF 381

Query: 180 ----------SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
                     +WT +I+GLA +G G +A+ LF +M   G  P+D AF G ++ACS  G +
Sbjct: 382 FAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGAL 441

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           + GR+    + +  G    +     M+ M  R G V+ A      MP   +P+ W ++I+
Sbjct: 442 ENGRQLHAQIVH-LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIA 499

Query: 290 ACCARG 295
           A    G
Sbjct: 500 ALGQHG 505



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 52/312 (16%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           D+  + TL+  Y S  G +++ R++F+E  +  RD+V ++AMI GY+ +     AI+LFR
Sbjct: 78  DVIARTTLITAY-SALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFR 136

Query: 102 QMQISGVCPDEITMVTVLSA----------CTDLGALEVGKWVESF-------------- 137
            M+ +   PD+ T  +VLSA          C  +    V   +E F              
Sbjct: 137 AMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKC 196

Query: 138 -----------------IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                            +  +M  R+  +   LI  + + GD+  A ++  +M  +  ++
Sbjct: 197 ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA 256

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W ++I+G   HG   +A+ LF +M   GV  D+  +  ++SAC+  G    G++     +
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 240 KNDFGIIPKIEHY----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           KN+    P  +        ++ +  + G+V  A +   +MP++ + I W TL+S     G
Sbjct: 317 KNELN--PDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSGYVNAG 373

Query: 296 ELKLAESITKRL 307
            ++ A+S   ++
Sbjct: 374 RMEEAKSFFAQM 385


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 309/534 (57%), Gaps = 65/534 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+ F++ FV+KA      L  G  +H   LK      + V  TL+ MYG C G +E  
Sbjct: 94  VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC-GCVEFA 152

Query: 66  RKVFDEMSE-------------------------------RDSVSWSAMIGGYARLG--- 91
           RKVFDEM +                               R+  SW+ M+ GY + G   
Sbjct: 153 RKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELE 212

Query: 92  ----------------LST------------DAIDLFRQMQISGVCPDEITMVTVLSACT 123
                            ST            ++   FR++Q +G+ P+E+++  VLSAC+
Sbjct: 213 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 272

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
             G+ E GK +  F+EK   +  V + NALIDM+++CG+V  A  +F  M   R IVSWT
Sbjct: 273 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 332

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+IAGLAMHG+G EAV LF EM   GV PD ++F+ LL ACSH GL+++G +YF  MK  
Sbjct: 333 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRV 392

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P+IEHYGCMVD+  RSG++++A++FI +MPI    I+WRTL+ AC + G ++LAE 
Sbjct: 393 YHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 452

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + +RL   +P +  + VLLS+ YA   +W+    IR+ M  + +KK    +L+E+   +Y
Sbjct: 453 VKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 512

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +F  G+K      E +E L E+  ++K +AGY P  +  L D+ EE+KED ++KHSEKLA
Sbjct: 513 KFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLA 572

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AFAL +   G  IRIVKNLR+C DCH+  K  SK+Y  EI+VRDR+RFH FKD
Sbjct: 573 LAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKD 626



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+SPN+ +   VL AC+  G    GK +HG V K  +   + V N L+ MY  C G + +
Sbjct: 256 GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC-GNVPM 314

Query: 65  GRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            R VF+ M E R  VSW++MI G A  G   +A+ LF +M   GV PD I+ +++L AC+
Sbjct: 315 ARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACS 374

Query: 124 DLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
             G +E G+  + F E + V      +     ++D++ + G + KA      M    T +
Sbjct: 375 HAGLIEEGE--DYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAI 432

Query: 180 SWTSVIAGLAMHG 192
            W +++   + HG
Sbjct: 433 VWRTLLGACSSHG 445



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 17/291 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV-HMYGSCEGGIELGRKVFDEMSE 74
           +L +C  +  L     +HG  +K+    D +    L+ H   S    +   R++     E
Sbjct: 3   LLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 59

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKW 133
            D+  ++ ++ GY+      +++ +F +M   G V PD  +   V+ A  +  +L  G  
Sbjct: 60  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 119

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +     K  +   + +   LI M+  CG V+ A K+F  M+   +V+W +VI        
Sbjct: 120 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 179

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
              A  +F++ML       +V   G + A    G ++  +  F  M +   +      + 
Sbjct: 180 VAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SWS 230

Query: 254 CMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAE 301
            M+  +  +G   E+  +   +Q+  +  N +    ++SAC   G  +  +
Sbjct: 231 TMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 281


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 309/534 (57%), Gaps = 65/534 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+ F++ FV+KA      L  G  +H   LK      + V  TL+ MYG C G +E  
Sbjct: 102 VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC-GCVEFA 160

Query: 66  RKVFDEMSE-------------------------------RDSVSWSAMIGGYARLG--- 91
           RKVFDEM +                               R+  SW+ M+ GY + G   
Sbjct: 161 RKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELE 220

Query: 92  ----------------LST------------DAIDLFRQMQISGVCPDEITMVTVLSACT 123
                            ST            ++   FR++Q +G+ P+E+++  VLSAC+
Sbjct: 221 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 280

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
             G+ E GK +  F+EK   +  V + NALIDM+++CG+V  A  +F  M   R IVSWT
Sbjct: 281 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 340

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+IAGLAMHG+G EAV LF EM   GV PD ++F+ LL ACSH GL+++G +YF  MK  
Sbjct: 341 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRV 400

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P+IEHYGCMVD+  RSG++++A++FI +MPI    I+WRTL+ AC + G ++LAE 
Sbjct: 401 YHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 460

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + +RL   +P +  + VLLS+ YA   +W+    IR+ M  + +KK    +L+E+   +Y
Sbjct: 461 VKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 520

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +F  G+K      E +E L E+  ++K +AGY P  +  L D+ EE+KED ++KHSEKLA
Sbjct: 521 KFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLA 580

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AFAL +   G  IRIVKNLR+C DCH+  K  SK+Y  EI+VRDR+RFH FKD
Sbjct: 581 LAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKD 634



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+SPN+ +   VL AC+  G    GK +HG V K  +   + V N L+ MY  C G + +
Sbjct: 264 GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC-GNVPM 322

Query: 65  GRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            R VF+ M E R  VSW++MI G A  G   +A+ LF +M   GV PD I+ +++L AC+
Sbjct: 323 ARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACS 382

Query: 124 DLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
             G +E G+  + F E + V      +     ++D++ + G + KA      M    T +
Sbjct: 383 HAGLIEEGE--DYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAI 440

Query: 180 SWTSVIAGLAMHG 192
            W +++   + HG
Sbjct: 441 VWRTLLGACSSHG 453



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 17/291 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV-HMYGSCEGGIELGRKVFDEMSE 74
           +L +C  +  L     +HG  +K+    D +    L+ H   S    +   R++     E
Sbjct: 11  LLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 67

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKW 133
            D+  ++ ++ GY+      +++ +F +M   G V PD  +   V+ A  +  +L  G  
Sbjct: 68  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +     K  +   + +   LI M+  CG V+ A K+F  M+   +V+W +VI        
Sbjct: 128 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
              A  +F++ML       +V   G + A    G ++  +  F  M +   +      + 
Sbjct: 188 VAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SWS 238

Query: 254 CMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAE 301
            M+  +  +G   E+  +   +Q+  +  N +    ++SAC   G  +  +
Sbjct: 239 TMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 289


>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
 gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
          Length = 552

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/423 (44%), Positives = 285/423 (67%), Gaps = 3/423 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT  F LKACA +     G+ +H   L+       +VQ  L+++Y  CE  + L R 
Sbjct: 124 PNTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQ-VALART 182

Query: 68  VFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VFD M+ ++  V+WSAMI GY+R+G+ T+A+ LFR+MQ  GV PDE+TMV V+SAC   G
Sbjct: 183 VFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAG 242

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL++GKWV ++I+++ +   + L  ALIDM+AKCG +++A  +F +M  +   +W+++I 
Sbjct: 243 ALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIV 302

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G A+HG   +A+ LF  MLE  V P++V F+G+LSAC+H GLVD GR Y+  M+N  GI 
Sbjct: 303 GFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQN-LGIK 361

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +E+YGCM+D+LCRSG + +A+ F+  MPI  N IIWRTL+ AC +   + +AES +KR
Sbjct: 362 PSMENYGCMIDLLCRSGLLDDAYSFVIDMPISPNSIIWRTLLVACKSSNRIDIAESASKR 421

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+  EP +  NYVLLS++ A   +W++ + +R+ M    +  + G + IE++  ++EFV 
Sbjct: 422 LLELEPHNPENYVLLSNLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSIEINGYLHEFVV 481

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
            D SH + KEI  +L E+  ++++AG+ P T+ VL D+ EE+KE AL +HSE+LAIA+ L
Sbjct: 482 SDDSHPEIKEIRLVLREIADRVRRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGL 541

Query: 427 LKT 429
           LKT
Sbjct: 542 LKT 544



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P++ T   V+ ACA  G L+LGK VH  + +     D+ +   L+ MY  C G
Sbjct: 219 MQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKC-G 277

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R VFD M E+D+ +WSAMI G+A  GL  DA+ LF +M    V P+ +T + VLS
Sbjct: 278 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 337

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           AC   G ++ G+   S ++   +  S+     +ID+  + G +D A
Sbjct: 338 ACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMIDLLCRSGLLDDA 383


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 311/481 (64%), Gaps = 7/481 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKAC----AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
           M   GV  ++FTY +VLKAC    A +  L  G+ +HG +L+  F   +H+  TL+ MY 
Sbjct: 170 MNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYA 229

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEIT 114
              G +    +VFD+M  ++ VSWSAMI  Y++ G   +A++LFR+M +    + P+ +T
Sbjct: 230 RF-GCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVT 288

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           MV+VL AC  L ALE GK +  +I ++ ++  + + +AL+ ++A+CG+++   ++F  M 
Sbjct: 289 MVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERME 348

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R +VSW S+I+   +HG G +A+ +F+EM++ G+ P  ++FV +L ACSH GLV++G+ 
Sbjct: 349 KRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKV 408

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F+SM     I P +EHY CMVD+L R+ R+ EA + I  M IE  P +W +L+ +C   
Sbjct: 409 LFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIH 468

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
             ++LAE  T RL   EP +  NYVLL+ IYA+   W +  +++ +++ RG++K+PG + 
Sbjct: 469 CNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSC 528

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           IE+  +IY F+  D+ + Q ++++ +L ++  +MK+ GYVP T  VL D++ E+KE  + 
Sbjct: 529 IEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVL 588

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLA+AF L+ +  G  IRI KNLR+C DCHS TKFISK  NREI+VRD +RFH F+
Sbjct: 589 GHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQ 648

Query: 475 D 475
           D
Sbjct: 649 D 649



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 25/316 (7%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +P + TY  ++ +C     L  G  +H  ++      D  +   L++MY   +  I+  R
Sbjct: 75  NPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDS-IDNAR 133

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           KVFD+  +R    W+A+       G   + +DL+R+M   GV  D  T   VL AC    
Sbjct: 134 KVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASE 193

Query: 127 A----LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           A    L  G+ +   I +      V +   L+DM+A+ G V  A ++F  M  + +VSW+
Sbjct: 194 AFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWS 253

Query: 183 SVIAGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKG-------- 232
           ++IA  + +G+ LEA+ LF +M+     + P+ V  V +L AC+    +++G        
Sbjct: 254 AMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYIL 313

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R   DS      I+P +     +V +  R G ++  H   ++M  + + + W +LIS+  
Sbjct: 314 RRGLDS------ILPVV---SALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYG 363

Query: 293 ARGELKLAESITKRLI 308
             G  + A  I K +I
Sbjct: 364 IHGFGRKAIQIFKEMI 379



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 11/255 (4%)

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           S  DS + + +I    + G    A+ +  Q       P + T   ++ +CT   +L  G 
Sbjct: 43  SNGDSNNNNPLIQSLCKQGNLNQALQVLSQEP----NPTQHTYELLILSCTRQNSLPQGI 98

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   +     ++   L   LI+M+++   +D A K+F     RTI  W ++   L + G
Sbjct: 99  DLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAG 158

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSAC----SHCGLVDKGREYFDSMKNDFGIIPK 248
            G E + L+  M   GVP D   +  +L AC    +   L+  GRE    +    G    
Sbjct: 159 YGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRH-GFEGH 217

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-LKLAESITKRL 307
           +     ++DM  R G V  A     +MP++ N + W  +I+     G+ L+  E   K +
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPVK-NVVSWSAMIACYSKNGKPLEALELFRKMM 276

Query: 308 IGNEPMHESNYVLLS 322
           + N+ +  ++  ++S
Sbjct: 277 LENQDLLPNSVTMVS 291


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/476 (41%), Positives = 295/476 (61%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+SP+ +T   VL  CA    L+ GK VH  + +   G DI V N L+ MY  C G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKC-G 446

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            +     VF EM  +D +SW+ +IGGY++   + +A+ LF  + +     PDE T+  VL
Sbjct: 447 SMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVL 506

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L A + G+ +  +I +        + N+L+DM+AKCG +  A  LF  +  + +V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLV 566

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT +IAG  MHG G EA+ALF +M +AG+ PD+++FV LL ACSH GLVD+G  +F+ M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +++  I P +EHY C+VDML R+G + +A+ FI+ MPI  +  IW  L+  C    ++KL
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE + +++   EP +   YVL+++IYA+  +WE+  ++R+ + +RG++K PG + IE+  
Sbjct: 687 AERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKG 746

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +  FV GD S+ ++++I   L  +  +M + GY P T   L+D  E +KE+AL  HSEK
Sbjct: 747 RVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A  ++ +  G  IR+ KNLRVC DCH   KF+SK+  REIV+RD +RFH FKD
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 170/289 (58%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  + +T+  V K+ + +  +N G+ +HG +LK  FG+   V N+LV  Y     
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLK-NH 244

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RKVFDEM+ERD +SW+++I GY   GL+   + +F QM  SG+  D  T+V+V +
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFA 304

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C D   + +G+ V  F  K   +R    CN L+DM++KCGD+D A  +FR M+GR++VS
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           +TS+IAG A  G   EAV LFEEM E G+ PD      +L+ C+   L+D+G+   + +K
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424

Query: 241 -NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            ND G    + +   ++DM  + G ++EA     +M ++ + I W T+I
Sbjct: 425 ENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVI 470



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 160/316 (50%), Gaps = 8/316 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+  +  T   V   CA    ++LG++VH   +K  F  +    NTL+ MY  C G
Sbjct: 287 MLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC-G 345

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VF EMS R  VS+++MI GYAR GL+ +A+ LF +M+  G+ PD  T+  VL+
Sbjct: 346 DLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C     L+ GK V  +I++  +   + + NAL+DM+AKCG + +A  +F  M  + I+S
Sbjct: 406 CCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIIS 465

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS- 238
           W +VI G + +    EA++LF  +L E    PD+     +L AC+     DKGRE     
Sbjct: 466 WNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+N  G          +VDM  + G +  A      +    + + W  +I+     G  K
Sbjct: 526 MRN--GYFSDRHVANSLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVMIAGYGMHGFGK 582

Query: 299 LAESITK--RLIGNEP 312
            A ++    R  G EP
Sbjct: 583 EAIALFNQMRQAGIEP 598



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 33/314 (10%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL+ CA    L  GK V   +    F  D ++ + L  MY +C G ++   +VFD++   
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNC-GDLKEASRVFDQVKIE 158

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            ++ W+ ++   A+ G  + +I LF++M  SGV  D  T   V  + + L ++  G+ + 
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLH 218

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            +I K        + N+L+  + K   VD A K+F  M  R ++SW S+I G   +G   
Sbjct: 219 GYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-------------------- 235
           + +++F +ML +G+  D    V + + C+   L+  GR                      
Sbjct: 279 KGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLL 338

Query: 236 --------FDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIW 284
                    DS K  F  +    +  Y  M+    R G   EA +  ++M  E  +P ++
Sbjct: 339 DMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 285 R-TLISACCARGEL 297
             T +  CCAR  L
Sbjct: 399 TVTAVLNCCARNRL 412



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 4/186 (2%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+ +VL  C D  +L+ GK V++FI          L + L  M+  CGD+ +A ++F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             +     + W  ++  LA  G    ++ LF++M+ +GV  D   F  +  + S    V+
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 231 KGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            G +     +K+ FG    + +   +V    ++ RV  A +   +M  E + I W ++I+
Sbjct: 213 GGEQLHGYILKSGFGERNSVGN--SLVAFYLKNHRVDSARKVFDEMT-ERDVISWNSIIN 269

Query: 290 ACCARG 295
              + G
Sbjct: 270 GYVSNG 275


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 289/470 (61%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN+FT   +L+ACA + DL LG  +H  V+K     ++ V N L+ MY  C G +E  
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKC-GRMENS 401

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++F E      VSW+ +I GY + G    A+ LF+ M    V   E+T  +VL AC  +
Sbjct: 402 LQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGI 461

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            ALE G  + S   K + +++  + NALIDM+AKCG++  A  +F  +     VSW ++I
Sbjct: 462 AALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMI 521

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G ++HG   EA+  FE MLE    PD V FVG+LSACS+ GL+D+G+ YF SM  ++ I
Sbjct: 522 SGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDI 581

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P  EHY CMV +L RSG + +A + + ++P E + ++WR L+SAC    +++L     +
Sbjct: 582 EPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQ 641

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           R++  EP  E+ +VLLS+IYA   RW     IR  M ++G++K PG + IE    ++ F 
Sbjct: 642 RVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFS 701

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD SH  +K I  ML+ +  K +  GYVP  S VLLD+ + DKE  L  HSE+LA+A+ 
Sbjct: 702 VGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYG 761

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L++TP  +P+RI+KNLR+C DCH+A K ISKI  R+I++RD +RFHHF +
Sbjct: 762 LIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHE 811



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 161/292 (55%), Gaps = 5/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT+  VLKAC G+   N+GK+VHG   K  + +++ V   L+ +Y    G ++ 
Sbjct: 241 GFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK-SGDVDD 299

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+EM + D + WS MI  YA+   S +AI++F +M+   V P++ T+ ++L AC  
Sbjct: 300 ALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACAS 359

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L++G  +   + K  ++ +V + NAL+DM+AKCG ++ +L+LF      T VSW +V
Sbjct: 360 LVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTV 419

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDF 243
           I G    G G +A+ LF++MLE  V   +V +  +L AC+    ++ G +    S+K  +
Sbjct: 420 IVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIY 479

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                + +   ++DM  + G +K+A   +  M  E + + W  +IS     G
Sbjct: 480 DKNTVVGN--ALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVHG 528



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 25/291 (8%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F +  VLK         LG SVH  V K  F  D  V   L+  Y  C G  E  R+V
Sbjct: 144 NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVC-GYAECARQV 202

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD +  +D VSW+ M+  Y       +++ LF +M+I G  P+  T  +VL AC  L   
Sbjct: 203 FDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVF 262

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            VGK V     K      + +   LID++ K GDVD AL++F  M    ++ W+ +IA  
Sbjct: 263 NVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARY 322

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGREYFD 237
           A   +  EA+ +F  M    V P+      LL AC+           HC +V  G +   
Sbjct: 323 AQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNV 382

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            + N             ++DM  + GR++ + +   + P     + W T+I
Sbjct: 383 FVSN------------ALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTVI 420



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE  V   + TY  VL+ACAGI  L  G  +H   +K  +  +  V N L+ MY  C G
Sbjct: 439 MLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKC-G 497

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R VFD + E D VSW+AMI GY+  GL  +A+  F  M  +   PD++T V +LS
Sbjct: 498 NIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILS 557

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC++ G L+ G+ + +S +E+  +         ++ +  + G +DKA KL   +    ++
Sbjct: 558 ACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSV 617

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           + W ++++   +H          + +LE  + P+D A   LLS
Sbjct: 618 MVWRALLSACVIHNDVELGRISAQRVLE--IEPEDEATHVLLS 658



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 15/287 (5%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N + Y  +L++C   GD   GK +H  ++K     D+   N L++ Y   +  +    K+
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDS-LPDAAKL 101

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEM +R++VS+  +I GY++    ++AI LF ++Q  G   +     TVL         
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           ++G  V + + K   +    +  ALID ++ CG  + A ++F ++  + +VSWT ++A  
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
             +    E++ LF  M   G  P++  F  +L AC        G E F+  K   G   K
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV-------GLEVFNVGKAVHGCAFK 274

Query: 249 IEHY-----GC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             +      G  ++D+  +SG V +A +  ++MP + + I W  +I+
Sbjct: 275 TSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIA 320


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/511 (39%), Positives = 301/511 (58%), Gaps = 36/511 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           M +  V P++     ++ AC   G++   ++++  +++     D H+   LV MY     
Sbjct: 206 MKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGC 265

Query: 57  --------------------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                     S  G ++  R +FD+   +D V W+ MI  YA  
Sbjct: 266 MDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAES 325

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A+ +F +M  SG+ PD +TM++V+SAC +LG L+  KWV  +     +   + + 
Sbjct: 326 DHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPID 385

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI+M+AKCG +D A  +F  M  R +VSW+S+I   AMHG   ++++LF +M +  V 
Sbjct: 386 NALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVE 445

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P++V FVG+L  CSH GLV++G++ F SM +++ I PKIEHYGCMVD+  R+  ++EA E
Sbjct: 446 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALE 505

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MP+  N +IW +L+SAC   GEL+L E   KR++  EP H+   VL+S+IYA+  R
Sbjct: 506 VIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYR 565

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W+    IR +M+K+ + K  G + I+L+ + +EF+ GDK H QS EIY  L E+  K+K 
Sbjct: 566 WDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKL 625

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP------IRIVKNLRVC 444
           AGYVP    VL+D+ EE+K+D +  HSEKLA+ F L+             IRIVKNLRVC
Sbjct: 626 AGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVC 685

Query: 445 NDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            DCH+  K +SK+Y  EI+VRDR RFH +KD
Sbjct: 686 EDCHAFFKLVSKVYELEIIVRDRTRFHRYKD 716



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 156/319 (48%), Gaps = 34/319 (10%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++ ++P +LKA + +  L  G  +HG   K     D  V+  L+ MY +C G I   R V
Sbjct: 113 DRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAAC-GRINYARNV 171

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEMS+RD V+W+ MI  Y R GL  +A  LF +M+ S V PDE+ +  ++SAC   G +
Sbjct: 172 FDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 231

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT----------- 177
              + +  F+ +  V     L  AL+ M+A  G +D A++ FR M+ R            
Sbjct: 232 RYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGY 291

Query: 178 --------------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                               +V WT++I+  A      EA+ +FEEM  +G+ PD V  +
Sbjct: 292 SKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTML 351

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++SAC + G +DK + +     +  G+   +     +++M  + G +  A +  +KMP 
Sbjct: 352 SVISACVNLGTLDKAK-WVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT 410

Query: 278 EANPIIWRTLISACCARGE 296
             N + W ++I+A    GE
Sbjct: 411 R-NVVSWSSMINAFAMHGE 428


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/384 (47%), Positives = 270/384 (70%)

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
           L    + LF +MQ S +  +E+T+V ++SAC +LGAL  G W   ++ K  +  +  +  
Sbjct: 130 LIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGT 189

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           ALIDM++KCG +D A +LF  +  R  + + ++I G A+HG G +A+ LF++M   G+ P
Sbjct: 190 ALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAP 249

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           DDV  V  + +CSH GLV++G + F+SMK  +G+ PK+EHYGC+VD+L R+GR++EA E 
Sbjct: 250 DDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEER 309

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           +  MP++ N +IWR+L+ A    G L++ E + K LI  EP    NYVLLS++YA + RW
Sbjct: 310 VLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRW 369

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           +   ++R++M   G+ K+PGS+L+E+   ++EF+ GDK+H +SKEIY  L+EM R++ + 
Sbjct: 370 DDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEY 429

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           G+ P T EVL DI EE+KEDAL+ HSE+LAIAFAL+ +    PIRI+KNLRVC DCH+++
Sbjct: 430 GHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSS 489

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           K ISKIY REI+VRDR+RFHHFK+
Sbjct: 490 KLISKIYEREIIVRDRNRFHHFKE 513



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  N+ T   ++ ACA +G L+ G   H  VLK     +  V   L+ MY  C G ++L 
Sbjct: 146 IKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKC-GCLDLA 204

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++FD++  RD++ ++AMIGG+A  G    A+DLF++M + G+ PD++T+V  + +C+ +
Sbjct: 205 CQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHV 264

Query: 126 GALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTS 183
           G +E G  V ES  E   V   +     L+D+  + G + +A +   +M  +   V W S
Sbjct: 265 GLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRS 324

Query: 184 VIAGLAMHG 192
           ++    +HG
Sbjct: 325 LLGAARVHG 333


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/475 (42%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GV  ++     V++AC    ++ +G SVHG +L+     D+    +LV MY    G
Sbjct: 200 MREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK-NG 258

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  +VF  M  R+ VSWSAMI G+A+ G S +A+ LFR MQ SG+ PD   +V+ L 
Sbjct: 259 LLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALL 318

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+++G L++G+ V  FI ++     + L  A IDM++KCG +  A  LF  ++ R ++ 
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA    HGRG +A+ LF+EM E G+ PD   F  LLSA SH GLV++G+ +F  M 
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV 437

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N F I P  +HY C+VD+L RSG V+EA + +  M  E    IW  L+S C    +L+L 
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELG 497

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           ESI   ++  +P       L+S++YA   +W+K  ++R++M   G KK+PG + IE+   
Sbjct: 498 ESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGT 557

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            + FV  D+SH Q +EI   + ++  +M+K GY+P T  V  D+ EE KE  L+ HSE+L
Sbjct: 558 RHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERL 617

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I+KNLRVC DCH A K+ISKI +REIVVRD  RFHHFKD
Sbjct: 618 AIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKD 672



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 10/327 (3%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     P+  T+   L ACA +GDL  G+SV        + DD+ V ++L+H+Y    G 
Sbjct: 100 LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARW-GA 158

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    KVF  M  RD V+WS M+ G+   G   DAI ++R+M+  GV  DE+ M+ V+ A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           CT    + +G  V   + +  +   V    +L+DM+AK G +D A ++F  M  R  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY--FDSM 239
           +++I+G A +G+  EA+ LF  M  +G+ PD  A V  L ACS+ G +  GR    F   
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + DF  I         +DM  + G +  A + +  M  + + I+W  +I+ C A G  + 
Sbjct: 339 RFDFNCILGT----AAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQD 393

Query: 300 AESITKRL--IGNEPMHESNYVLLSHI 324
           A ++ + +   G  P H +   LLS +
Sbjct: 394 ALTLFQEMNETGMRPDHATFASLLSAL 420



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 3/210 (1%)

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           ++R G    A+ +FR +  +   PD  T    LSAC  LG L  G+ V            
Sbjct: 84  HSRRGSPASALRVFRALPPAAR-PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V +C++L+ ++A+ G +  A+K+F  M  R  V+W++++AG    G+ L+A+ ++  M E
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            GV  D+V  +G++ AC+    V  G      +    G+   +     +VDM  ++G + 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGE 296
            A      M +  N + W  +IS     G+
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQ 290


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/520 (39%), Positives = 302/520 (58%), Gaps = 54/520 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +   VL ACA +G    GK+VHG  ++    +D+ V N LV MY  C G ++   K
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKC-GMVDEASK 69

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAI------------------------------ 97
           VFD + E+D VSW+AM+ GY+++G   DA+                              
Sbjct: 70  VFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129

Query: 98  -----DLFRQMQISG-----------------VCPDEITMVTVLSACTDLGALEVGKWVE 135
                D+FR+MQ                    V P+  T+   L AC  L AL +G+ + 
Sbjct: 130 GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 136 SFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
           ++I +   + + + + N LIDM+AK GD+D A  +F ++  +  VSWTS++ G  MHGRG
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            EA+ +F+EM   G+ PD V  + +L ACSH G++D+G E+F+SM  +FG+IP  EHY C
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC 309

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           MVD+L R+GR+ EA E I+ M +E + I+W  L+S C     ++L E   K+L+     +
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEN 369

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
           + +Y LLS+IYA   RW+   ++R +M   G++K PG + ++       F   DK+H QS
Sbjct: 370 DGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQS 429

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           K+IYE+L  + +++K  GYVP TS  L D+++E+K D L +HSEKLA+A+ +L + PG P
Sbjct: 430 KQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAP 489

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IRI KNLRVC DCH+A  +IS I + EI++RD  RFHHFK
Sbjct: 490 IRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFK 529



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 108/195 (55%), Gaps = 14/195 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIEL 64
           V PN FT    L ACA +  L LG+ +H  +L+  F    ++V N L+ MY    G I++
Sbjct: 162 VKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAK-SGDIDV 220

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD + +++ VSW++++ GY   G   +A+++F +M+  G+ PD +T++ VL AC+ 
Sbjct: 221 ARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSH 280

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNA------LIDMFAKCGDVDKALKLFRSMNGR-T 177
            G ++ G  +E F     +++  G+         ++D+  + G +++A++L   M    +
Sbjct: 281 SGMIDQG--IEFF---NSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPS 335

Query: 178 IVSWTSVIAGLAMHG 192
            + W ++++G  +H 
Sbjct: 336 SIVWVALLSGCRIHA 350


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/409 (46%), Positives = 270/409 (66%), Gaps = 1/409 (0%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F  + ++  VSW+ MI  Y +  +   ++DL+ QM    V PD IT  +VL AC DL 
Sbjct: 257 EMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLS 316

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           AL +G+ +  ++E++ +  ++ L N+LIDM+A+CG ++ A ++F  M  R + SWTS+I+
Sbjct: 317 ALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLIS 376

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
              M G+G  AVALF EM  +G  PD +AFV +LSACSH GL+++G+ YF  M +D+ I 
Sbjct: 377 AYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKIT 436

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P IEH+ C+VD+L RSGRV EA+  I++MP++ N  +W  L+S+C     + +      +
Sbjct: 437 PIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADK 496

Query: 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           L+   P     YVLLS+IYAK  RW + T IR +M +R ++K+PG + +EL+N+++ F+ 
Sbjct: 497 LLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLA 556

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD  H QSKEIYE L  +  KMK+ GYVP T   L D+ EEDKE  L  HSEKLAI FA+
Sbjct: 557 GDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAI 616

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L T   +PIRI KNLRVC DCH A K ISKI  REIV+RD +RFHHFKD
Sbjct: 617 LNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKD 664



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 42/299 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G SP+ +TYP VLKAC+   +L +G  +HGAV K     ++ V N L+ +YG C G
Sbjct: 124 MVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R V DEM  +D VSW++M+ GYA+     DA+D+ R+M      PD  TM ++L 
Sbjct: 183 CLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T+  +  V  +VE                                ++F ++  +++VS
Sbjct: 243 AVTNTSSENV-LYVE--------------------------------EMFMNLEKKSLVS 269

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFD 237
           W  +I+    +    ++V L+ +M +  V PD +    +L AC     +  GR   EY +
Sbjct: 270 WNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVE 329

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             K    + P +     ++DM  R G +++A     +M    +   W +LISA    G+
Sbjct: 330 RKK----LCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFR-DVASWTSLISAYGMTGQ 383



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 11/221 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T   VL+AC  +  L LG+ +H  V + +   ++ ++N+L+ MY  C G +E  
Sbjct: 298 VEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARC-GCLEDA 356

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFD M  RD  SW+++I  Y   G   +A+ LF +MQ SG  PD I  V +LSAC+  
Sbjct: 357 KRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHS 416

Query: 126 GALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NGRTIVS 180
           G L  GK + +   +   +   +     L+D+  + G VD+A  + + M    N R    
Sbjct: 417 GLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERV--- 473

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           W ++++   ++      +   +++L+  + P++  +  LLS
Sbjct: 474 WGALLSSCRVYSNMDIGILAADKLLQ--LAPEESGYYVLLS 512



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 1/201 (0%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           D+   K+VH  V    F ++  +   L+  Y +  G   L R VFD + ER+ + ++ MI
Sbjct: 47  DIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAA-RGEPGLARNVFDVIPERNVIFYNVMI 105

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
             Y    L  DA+ +FR M   G  PD  T   VL AC+    L +G  +   + K  ++
Sbjct: 106 RSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLD 165

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            ++ + N LI ++ KCG + +A  +   M  + +VSW S++AG A + +  +A+ +  EM
Sbjct: 166 LNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM 225

Query: 205 LEAGVPPDDVAFVGLLSACSH 225
                 PD      LL A ++
Sbjct: 226 DGVRQKPDACTMASLLPAVTN 246


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/447 (42%), Positives = 281/447 (62%), Gaps = 1/447 (0%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           GK +HG +++     D  V   L+ +YG C G +   R +FD+M+++D VSW+ MI    
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKC-GSLNEARGIFDQMADKDIVSWTTMIHRCF 273

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             G   +   LFR +  SGV P+E T   VL+AC DL A ++GK V  ++ +   +    
Sbjct: 274 EDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF 333

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
             +AL+ +++KCG+ + A ++F  M    +VSWTS+I G A +G+   A+  FE +L +G
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSG 393

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             PD++ FVG+LSAC+H GLVD G EYF S+K   G++   +HY C++D+L RSGR KEA
Sbjct: 394 TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEA 453

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              I  MP++ +  +W +L+  C   G ++LAE   K L   EP + + Y+ LS+IYA  
Sbjct: 454 ENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANA 513

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             W ++TK+R  MD RG+ K PG + IE+  +++ F+ GD SH +  +I+E L E+ +KM
Sbjct: 514 GLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKM 573

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K+ GYV  T+ VL D+ EE KE  +  HSEKLA+AF ++ T PGTPI++ KNLR C DCH
Sbjct: 574 KEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCH 633

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A K+ISKI  R+I+VRD +RFH F D
Sbjct: 634 NAMKYISKIVQRKIIVRDSNRFHCFVD 660



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 37/339 (10%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-------- 59
           P+   Y  ++ AC     L LGK VH       F   I + N L+HMY  C         
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 60  ----------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
                                 G IE  RK+FDEM  RD+ SW+A+I GY   G   +A+
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEAL 180

Query: 98  DLFRQMQ--ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           DLFR MQ   S  C +  T+ + L+A   + +L  GK +  ++ +  +     +  AL+D
Sbjct: 181 DLFRMMQENESSNC-NMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLD 239

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           ++ KCG +++A  +F  M  + IVSWT++I      GR  E  +LF +++ +GV P++  
Sbjct: 240 LYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT 299

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F G+L+AC+       G+E    M    G  P       +V +  + G  + A     +M
Sbjct: 300 FAGVLNACADLAAEQMGKEVHGYMTR-VGYDPFSFAASALVHVYSKCGNTETARRVFNQM 358

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLI--GNEP 312
           P   + + W +LI      G+  +A    + L+  G +P
Sbjct: 359 P-RPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKP 396



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 13/254 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++  GV PN++T+  VL ACA +    +GK VHG + +  +       + LVH+Y  C G
Sbjct: 288 LMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKC-G 346

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E  R+VF++M   D VSW+++I GYA+ G    A+  F  +  SG  PDEIT V VLS
Sbjct: 347 NTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLS 406

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           ACT  G +++G ++  S  EK  +  +      +ID+ A+ G   +A  +  +M  +   
Sbjct: 407 ACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDK 466

Query: 179 VSWTSVIAGLAMHGR----GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
             W S++ G  +HG        A ALFE  LE   P +   ++ L +  ++ GL  +  +
Sbjct: 467 FLWASLLGGCRIHGNIELAERAAKALFE--LE---PENPATYITLSNIYANAGLWTEETK 521

Query: 235 YFDSMKNDFGIIPK 248
             + M N  GI+ K
Sbjct: 522 VRNDMDNR-GIVKK 534


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/476 (40%), Positives = 294/476 (61%), Gaps = 6/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  +L     +        +H  V+K  +     V   L+  Y     
Sbjct: 388 MRREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGN 443

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   KVF+ +  +D ++WSAM+ GYA+ G + +A  LF Q+   G+ P+E T  +V++
Sbjct: 444 TID-AVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVIN 502

Query: 121 AC-TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC +   A E GK   ++  K  +N ++ + +AL+ M+AK G++D A ++F+    R +V
Sbjct: 503 ACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLV 562

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G + HG+  +A+ +F+EM +  +  D V F+G+++AC+H GLV+KG++YF+SM
Sbjct: 563 SWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSM 622

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            ND  I P ++HY CM+D+  R+G +++A   I +MP      +WRTL+ A      ++L
Sbjct: 623 INDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVEL 682

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   ++LI  +P   + YVLLS++YA    W+++T +R++MDKR +KK PG + IE+ N
Sbjct: 683 GELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKN 742

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F+ GD +H  S +IY  L E+  ++K AGY P T  V  DI +E KE  L+ HSE+
Sbjct: 743 KTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSER 802

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPP  PI+IVKNLRVC DCH+ TK +S +  R IVVRD +RFHHFKD
Sbjct: 803 LAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKD 858



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 8/298 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   + P++ T   V   CAG  D  LG+ VH   +KF   D + V  +LV MY   E 
Sbjct: 84  LLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTEN 143

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  GR+VFDEM ER+ VSW++++ GY+  GL     +LF QMQ  GV P+  T+ TV++
Sbjct: 144 -VNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIA 202

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  + G + +G  V + + K     ++ + N+LI ++++ G +  A  +F  M  R  V+
Sbjct: 203 ALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVT 262

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS---HCGLVDKGREYFD 237
           W S+IAG   +G+ LE   +F +M  AGV P  + F  ++ +C+      LV   +    
Sbjct: 263 WNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQ--CK 320

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           ++K+ F    +I     MV  L +   + +A      M    N + W  +IS C   G
Sbjct: 321 ALKSGF-TTDQIVITALMV-ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNG 376



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 64  LGRKVFDEMSERDSV--SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   +FD++  R +     + ++  Y+R   + +A++LF  +  S + PDE T+  V + 
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C      ++G+ V     K  +   V +  +L+DM+ K  +V+   ++F  M  R +VSW
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS++AG + +G       LF +M   GV P+      +++A  + G+V  G +   +M  
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVV 221

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-LKLA 300
             G    I  +  ++ +  R G +++A +   KM I  + + W ++I+     G+ L++ 
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVF 280

Query: 301 ESITK-RLIGNEPMH 314
           E   K +L G +P H
Sbjct: 281 EIFNKMQLAGVKPTH 295


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/476 (42%), Positives = 295/476 (61%), Gaps = 7/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN  TY  +LKACA + D + G+ +H  V+K   G+   V N LV MY    G
Sbjct: 345 MLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAE-SG 403

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  RK FD++ ER+ +S S+ IG   R   S  +     Q++   V     T  ++LS
Sbjct: 404 CMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSS-----QIESMDVGVSTFTFASLLS 458

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIV 179
           A   +G    G+ + +   K       G+ N+L+ M+++CG +D A + F  M +   ++
Sbjct: 459 AAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVI 518

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+I+ LA HG    A++LF +M+ +GV P+DV ++ +LSACSH GLV +G+EYF SM
Sbjct: 519 SWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSM 578

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + D  +IP++EHY CMVD+L RSG V+EA EFI +MP +A+ ++W+TL+ AC     +++
Sbjct: 579 QKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEI 638

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + +I  EP   + YVLLS++YA    W++  +IR +M  R + K  G + + + N
Sbjct: 639 GEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGN 698

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+EF  GD SH +++EIY  L  + R++K  GYVP TS VL D++++ KE  L +HSEK
Sbjct: 699 TIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEK 758

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +A+AF L+ T P  PIRI KNLRVC DCHSA K+ISK   REI++RD +RFH  KD
Sbjct: 759 IAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKD 814



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 12/283 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDL--NLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGS 57
           MLE G+ PN FT      AC   G+L  + G +V G  +K  F G D+ V   L+ M+  
Sbjct: 137 MLESGLRPNAFTLCAAAHACFP-GELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFAR 195

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             G +   RKVF+ + ER  V W+ MI  Y + G +  A++LF  M   G  PD  TM +
Sbjct: 196 -NGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMN 174
           ++SAC + G+  +G+ + S + +  +     +   L+DM+ K      ++ A K+F+ M 
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMP 314

Query: 175 GRTIVSWTSVIAG-LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
              ++SWT++I+G +   G+   AV L  EML   + P+ + +  LL AC++    D GR
Sbjct: 315 THNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGR 374

Query: 234 E-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           + +   MK   G +  + +   +V M   SG ++EA +   ++
Sbjct: 375 QIHARVMKTSIGNVNVVGN--ALVSMYAESGCMEEARKAFDQL 415



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 134/279 (48%), Gaps = 30/279 (10%)

Query: 28  LGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-RDSVSWSAMIG 85
           LG+++H  +L  +  D D  V N+L+ MY  C G +   R+VFD M   RD VSW+AM  
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKC-GHVRAARRVFDGMRGLRDLVSWTAMAF 119

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC-----------TDLG-ALEVGKW 133
              R G   +A+ L  +M  SG+ P+  T+     AC           T LG A++ G W
Sbjct: 120 CLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFW 179

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
                     + SVG   ALIDMFA+ GD+  A K+F  +  RT+V WT +I      G 
Sbjct: 180 --------GTDVSVGC--ALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGC 229

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             +AV LF  MLE G  PD      ++SAC+  G    G++   S+    G++       
Sbjct: 230 AGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQ-LHSLVLRLGLVSDTCVSC 288

Query: 254 CMVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            +VDM  +      ++ A +  ++MP   N + W  LIS
Sbjct: 289 GLVDMYTKLQMEQSMECARKVFKRMPTH-NVMSWTALIS 326


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 296/510 (58%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ--FGDD--IHVQNTLVHMYG 56
           M+   + P++FT+  +L ACA  G    GKSVHG  ++ Q  F  +  + V N LV +Y 
Sbjct: 287 MVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLY- 345

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSA-------------------------------MIG 85
           S  G I +  K+FD M+ +D VSW+                                M+ 
Sbjct: 346 SKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVS 405

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           GY   GL+ DA+ LF QM+   V P + T    ++AC +LGAL+ GK + + + +     
Sbjct: 406 GYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEA 465

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S    NAL+ M+A+CG V  A  +F  M     VSW ++I+ L  HG G EA+ LF++M+
Sbjct: 466 SNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMV 525

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ PD ++F+ +L+AC+H GLVD G +YF+SM+ DFGI P  +HY  ++D+L R+GR+
Sbjct: 526 AQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRI 585

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
            EA + I+ MP E  P IW  ++S C   G+++L      +L    P H+  Y+LLS+ Y
Sbjct: 586 GEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTY 645

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           +   RW    ++R++M  RG+KK PG + IE+ N+++ F+ GD  H  + E+Y  L+ +G
Sbjct: 646 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVG 705

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            KM+K GYVP T   L D+   +KE  L  HSE+LA++F LLK P G  + ++KNL++C 
Sbjct: 706 AKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICG 765

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+A  F+S+   REIVVRD  RFHHFKD
Sbjct: 766 DCHTAMMFMSRAVGREIVVRDVRRFHHFKD 795



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 159/374 (42%), Gaps = 74/374 (19%)

Query: 8   PNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE--GGIE 63
           P+ +++  +L A   + DL +     +H AV K   G  + V N L+ +Y  C+  G   
Sbjct: 157 PDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTR 216

Query: 64  LGRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGL 92
             RKV DEM E+D ++W+                               AMI GY + G+
Sbjct: 217 DARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGM 276

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE-SFIEKQ---MVNRSVG 148
             +A +LFR+M    + PDE T  ++LSAC + G    GK V   FI  Q   +   ++ 
Sbjct: 277 CAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALP 336

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA------------------- 189
           + NAL+ +++K G +  A K+F SM  + +VSW ++++G                     
Sbjct: 337 VNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKS 396

Query: 190 -----------MHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
                      +HG GL  +A+ LF +M    V P D  + G ++AC   G +  G++  
Sbjct: 397 ELSWMVMVSGYVHG-GLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLH 455

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +    G          ++ M  R G VK+A      MP   + + W  +ISA    G 
Sbjct: 456 AHLVQ-CGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALGQHGH 513

Query: 297 LKLAESITKRLIGN 310
            + A  +  +++  
Sbjct: 514 GREALELFDQMVAQ 527



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 127/302 (42%), Gaps = 45/302 (14%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
            +LV  Y +  G +      FD +  + RD+V  +AMI  +AR  L+  A+ +FR +  S
Sbjct: 93  TSLVSAY-AVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLAS 151

Query: 107 --GVCPDEITMVTVLSACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKC-- 160
              + PD+ +  ++LSA   +  L V    +    + K      + + NALI ++ KC  
Sbjct: 152 DDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDA 211

Query: 161 --------------------------------GDVDKALKLFRSMNGRTIVSWTSVIAGL 188
                                           GDV  A   F  ++G   V W ++I+G 
Sbjct: 212 PGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGY 271

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY---FDSMKNDFGI 245
              G   EA  LF  M+   +PPD+  F  LLSAC++ G    G+     F  ++ DF  
Sbjct: 272 VQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVP 331

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     +V +  +SG++  A +    M ++ + + W T++S     G L  A  I K
Sbjct: 332 EAALPVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNTILSGYIESGCLDNAARIFK 390

Query: 306 RL 307
            +
Sbjct: 391 EM 392


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/509 (40%), Positives = 296/509 (58%), Gaps = 35/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G  P+   Y   L  CA          +HG   K        V+N L+H Y  C G
Sbjct: 66  LLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIHAYSVC-G 124

Query: 61  GIELGRKVFD-------------------------------EMSERDSVSWSAMIGGYAR 89
            +   RKVFD                               +M  RDSVSW+ +I     
Sbjct: 125 MLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVIAWCVA 184

Query: 90  LGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            G   +A+ +FR+M  S  C PD +T+V+V+SA   LGAL  G W  +++ ++ +     
Sbjct: 185 NGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEK 244

Query: 149 LCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           L +ALI+M++KCG ++ A+ +F  S   R++ +W +++AG    G    A+ LF  M  +
Sbjct: 245 LSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELFTRMESS 304

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G  P+ + F  LL+ACSH G V++G  YF+ M N   I P I HYGCMVD+ CR+G  ++
Sbjct: 305 GFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEK 364

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A E IQ MP+E +  +W+ L+ AC      +L +    RLI   P   + YVLLS+IYA 
Sbjct: 365 AEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSNIYAL 424

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
              W+   K+R++M   G++K+PGS+ IELD  I+EF+ GDKSH + +++YEML E+ ++
Sbjct: 425 DGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLSEICQQ 484

Query: 388 MKKAGYVPTTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           +K AGY P TS+VLLDI++ED KE +L  HSE+LA+AF L+ T PGTPIRIVKNLRVC D
Sbjct: 485 LKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKNLRVCGD 544

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+A K +SKIY R I+VRD +RFH F++
Sbjct: 545 CHNAIKLLSKIYGRCIMVRDANRFHRFRE 573



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 45/167 (26%)

Query: 197 AVALFEEMLEAGVPPDDVAFV-----------------------------------GLLS 221
           A+ LF+ +L +G  PD +A+                                    GL+ 
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIE--HYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           A S CG++   R+ FD         P+++   + C++    +        EF  +MP   
Sbjct: 119 AYSVCGMLFDARKVFDHG-------PEVDMIAWNCLLRGYAQGRDTGALREFFAQMPAR- 170

Query: 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           + + W T+I+ C A GE + A ++ + ++ +         L+S I A
Sbjct: 171 DSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISA 217


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 298/473 (63%), Gaps = 7/473 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   N FT   +LK    +      + +H  V+      D  +  +L+  Y +  G  + 
Sbjct: 119 GRRGNAFTLAILLKPRCSLAH---ARQLHANVVAEGHLRDALLATSLMRCYAN-RGDGDG 174

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTVLSAC 122
            RK+FDEM  RD+V+W+ +I  YAR   + DA+ LF +M  + S   PD++T + +L AC
Sbjct: 175 ARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC 234

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + LGAL+ G+ V ++ E+      + + N+LI M+ +CG VDKA ++F     +++V+WT
Sbjct: 235 SSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWT 294

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GLA +G G +A+++FEEM+ + V PD+  F G+LSACSH GLVD+G  +FD M+ +
Sbjct: 295 AMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE 354

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAE 301
           +G+ P + HYGC+VD++ R+G + EA+EF+  +M +  +  IWRTL+ AC   G + L E
Sbjct: 355 YGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGE 414

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            +   LI  +     +YVLL + YA +  W K ++IR++M + G++  PG T +E +  +
Sbjct: 415 RVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTV 474

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +EF+  D +H +  EIYE L E+ ++++ AGYVP  S  L D++ E KE AL  HSEKLA
Sbjct: 475 HEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLA 534

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAFALL TP   PIR+ KNLRVC DCH+ TK  S IY R ++VRDR RFHHF+
Sbjct: 535 IAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQ 587


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 285/467 (61%), Gaps = 2/467 (0%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
            F +   LKAC+ +GDL  G++VH  VLK     D  V N L+ +Y S +G  +   +VF
Sbjct: 178 NFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLY-SEDGCFDEALRVF 236

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D M  R+ VSW+++I G  +     +AI+ FR MQ  G+    +T+ T+L  C  + AL 
Sbjct: 237 DGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALG 296

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            GK + + I K        + N+L+DM+AKCG +D   ++F  M G+ + SW ++I G A
Sbjct: 297 SGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYA 356

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
           ++GR  EA+  F+EM+ +G  PD + F+ LLS CSH GL D G   F+ MK D+GI P +
Sbjct: 357 INGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTV 416

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EHY C+VD+L R+GR+KEA E ++ MP +    IW +L+++C   G + LAE++ KRL  
Sbjct: 417 EHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFE 476

Query: 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDK 369
            EP +  NYV+LS+IYA    WE    +RE M+KRGM K  G + +++ ++I+ FV G  
Sbjct: 477 LEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGS 536

Query: 370 SH-HQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           +    S E  ++   +   M++ GYVP T  VL D++EE +   +  HSE+LA  FAL+ 
Sbjct: 537 NEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALIN 596

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           T  G PIRI KNLRVC DCHS  K +SK+  R IV+RD +RFHHFKD
Sbjct: 597 TASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKD 643



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 116/265 (43%), Gaps = 6/265 (2%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS---WSAMIGGYARLGLSTDAIDLFRQM 103
           ++  L+ ++  C   ++  R+VF++  E   +    W AM  GY+R G   +A+ L+ +M
Sbjct: 111 LKGKLITLFSVCRR-VDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEM 169

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
                          L AC+DLG L+ G+ V + + K   +    + NAL+ ++++ G  
Sbjct: 170 VCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCF 229

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D+AL++F  M  R +VSW S+IAGL       EA+  F  M   G+    V    +L  C
Sbjct: 230 DEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVC 289

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +    +  G+E    +       P       +VDM  + G +         M  + +   
Sbjct: 290 ARVTALGSGKEIHAVIVKSTA-KPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK-DLTS 347

Query: 284 WRTLISACCARGELKLAESITKRLI 308
           W TLI+     G +  A    + +I
Sbjct: 348 WNTLITGYAINGRMTEAMESFQEMI 372


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/473 (41%), Positives = 296/473 (62%), Gaps = 3/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN+FT   +LKA       + G+ +H   LK+ +  ++HV ++L+ MY     
Sbjct: 197 MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAH 256

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E  + +F+ ++ ++ VSW+A+I G+AR G     + LF QM   G  P   T  +VL 
Sbjct: 257 MRE-AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL- 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+LE GKWV + + K        + N LIDM+AK G +  A K+FR +  + IVS
Sbjct: 315 ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS 374

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I+G A HG G EA+ LFE+ML+A V P+++ F+ +L+ACSH GL+D+G+ YF+ MK
Sbjct: 375 WNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK 434

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               I  ++ H+  +VD+L R+GR+ EA++FI++MPI+    +W  L+ AC     + L 
Sbjct: 435 KH-KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLG 493

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +++   +P     +VLLS+IYA   R     K+R++M + G+KK P  + +E++NE
Sbjct: 494 VYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENE 553

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D SH   +EI  M +++  K+K+ GYVP TS VL  +N++D+E  L  HSEKL
Sbjct: 554 VHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKL 613

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AFA+LKTPPG  IRI KN+R+C DCHSA KF S++  REI+VRD +RFHHF
Sbjct: 614 ALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHF 666



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 164/305 (53%), Gaps = 10/305 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P +  Y  +L  C  +  L  G+++H  +    F DD+ + N +++MY  C G +E  
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC-GSLEEA 159

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +FD+M  +D VSW+ +I GY++ G +++A+ LF +M   G  P+E T+ ++L A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            +   G+ + +F  K   + +V + ++L+DM+A+   + +A  +F S+  + +VSW ++I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG A  G G   + LF +ML  G  P    +  +L AC+  G +++G+     +    G 
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG- 337

Query: 246 IPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----ELKLA 300
              I + G  ++DM  +SG +K+A +  +++ ++ + + W ++IS     G     L+L 
Sbjct: 338 -QPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLF 395

Query: 301 ESITK 305
           E + K
Sbjct: 396 EQMLK 400



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           P+      +L+ CT L  L+ G+ + + I+       + L N +++M+AKCG +++A  L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  + +VSWT +I+G +  G+  EA+ALF +ML  G  P++     LL A S  G  
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPS 221

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           D       +    +G    +     ++DM  R   ++EA      +  + N + W  LI+
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNALIA 280

Query: 290 ACCARGELKLAESITKRLI--GNEPMH 314
               +GE +    +  +++  G EP H
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTH 307


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 302/517 (58%), Gaps = 47/517 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
           +L +G+ P   T    L AC G   L +G+++HG  +K     + +V   L+ MY     
Sbjct: 120 LLSHGLLPTAHTLSASLPACGG---LAVGRALHGYAVKLALSGEPYVATALLGMYARAGD 176

Query: 57  ------------------------SCEGGIEL---GRKVFDEMSERDSVSWSAMIGGYAR 89
                                   +C   + L    R +FD +  +D + W+AM+ GY +
Sbjct: 177 AAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQ 236

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI-----EKQMVN 144
            G  ++A+ LFR+M  SGV PDE+++V  LSA   LG  E G+W+ SF+      +  +N
Sbjct: 237 HGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLN 296

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFE 202
             VG   ALIDM+ KCG ++ A+ +F  +    R IV+W +++ G AMHG   EA+A F 
Sbjct: 297 ARVG--TALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFG 354

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           ++   G+ P D+ F+G+L+ACSH GLVD+GRE F SM  ++GI PK+EHYGCMVD+L R+
Sbjct: 355 QLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRA 414

Query: 263 GRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           GRV+EA E +Q M   + + ++W +L++AC     ++L + I   L+ N   +   YVLL
Sbjct: 415 GRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLL 474

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S++YA    W +  ++R +M   G++K PG + +E+   + EFV GD+SH ++ EIY  L
Sbjct: 475 SNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKL 534

Query: 382 DEMGRKMKKAGYVPTT---SEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIV 438
           +E+    +  G+VP T      L D +   KE AL  HSEKLA+AF L+ TPPGT I+IV
Sbjct: 535 EEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIV 594

Query: 439 KNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KNLR C DCH+  K +S++  R+IV RDR+RFHHF D
Sbjct: 595 KNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVD 631



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 120/299 (40%), Gaps = 39/299 (13%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV     T        AG         +H A ++     D  V   L   Y +  G ++L
Sbjct: 22  GVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAY-AASGRLDL 80

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACT 123
              +     +  +V +++ I  ++  GL   A+ L  +M +S G+ P   T+   L AC 
Sbjct: 81  AVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC- 139

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF-------------------------- 157
             G L VG+ +  +  K  ++    +  AL+ M+                          
Sbjct: 140 --GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVT 197

Query: 158 ------AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
                 AK G +D A  LF  +  + ++ W +++ G   HGR  EA+ LF  ML +GV P
Sbjct: 198 AMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEP 257

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--GCMVDMLCRSGRVKEA 268
           D+V+ V  LSA +  G  + GR     + N      ++       ++DM  + G +++A
Sbjct: 258 DEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDA 316


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 298/473 (63%), Gaps = 7/473 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   N FT   +LK    +      + +H  V+      D  +  +L+  Y +  G  + 
Sbjct: 133 GRRGNAFTLAILLKPRCSLAH---ARQLHANVVAEGHLRDALLATSLMRCYAN-RGDGDG 188

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTVLSAC 122
            RK+FDEM  RD+V+W+ +I  YAR   + DA+ LF +M  + S   PD++T + +L AC
Sbjct: 189 ARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQAC 248

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + LGAL+ G+ V ++ E+      + + N+LI M+ +CG VDKA ++F     +++V+WT
Sbjct: 249 SSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWT 308

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GLA +G G +A+++FEEM+ + V PD+  F G+LSACSH GLVD+G  +FD M+ +
Sbjct: 309 AMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE 368

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAE 301
           +G+ P + HYGC+VD++ R+G + EA+EF+  +M +  +  IWRTL+ AC   G + L E
Sbjct: 369 YGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGE 428

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            +   LI  +     +YVLL + YA +  W K ++IR++M + G++  PG T +E +  +
Sbjct: 429 RVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTV 488

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +EF+  D +H +  EIYE L E+ ++++ AGYVP  S  L D++ E KE AL  HSEKLA
Sbjct: 489 HEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLA 548

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAFALL TP   PIR+ KNLRVC DCH+ TK  S IY R ++VRDR RFHHF+
Sbjct: 549 IAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQ 601


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/499 (39%), Positives = 298/499 (59%), Gaps = 32/499 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   +L+AC  +GDL  GK VH  ++   +  D    N L++MY  C G +   ++
Sbjct: 220 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC-GNLLASQE 278

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR-------------------------- 101
           VF  M  +DSVSW++MI  Y + G   D++ +F                           
Sbjct: 279 VFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 338

Query: 102 -----QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
                +M+  GV PD  TM+++L  C+ L A   GK +   I K  +   V + N LI+M
Sbjct: 339 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 398

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           ++KCG +  + ++F+ M  + +V+WT++I+   M+G G +AV  F EM  AG+ PD VAF
Sbjct: 399 YSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAF 458

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
           V ++ ACSH GLV++G  YF  MK D+ I P+IEHY C+VD+L RS  + +A +FI  MP
Sbjct: 459 VAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMP 518

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336
           ++ +  IW  L+SAC   G+ ++AE +++R+I   P     YVL+S+IYA L +W++   
Sbjct: 519 LKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRS 578

Query: 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396
           IR+ +  RG+KK PG + +E+ N++Y F  G K   Q +E+ ++L  +   M K GY+  
Sbjct: 579 IRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIAN 638

Query: 397 TSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISK 456
              VL DI+E++K D L  HSE+LAIAF LL T PGTP++++KNLRVC DCH+ TK+ISK
Sbjct: 639 LQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISK 698

Query: 457 IYNREIVVRDRHRFHHFKD 475
           I  RE++VRD +RFH FKD
Sbjct: 699 IVQRELLVRDANRFHVFKD 717



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 42/333 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIEL 64
           + P+ +T+P V+ ACAG+ D  + KS+H  VL   FG D+++ N L+ MY  C    ++ 
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMY--CRFNDLDK 168

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM------QISGVCPDEITMVTV 118
            RKVF+EM  RD VSW+++I GY   G   +A++++ Q        ++   PD +T+ ++
Sbjct: 169 ARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSI 228

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV--------------- 163
           L AC  LG LE GK+V  ++            N LI+M+AKCG++               
Sbjct: 229 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 288

Query: 164 ----------------DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                             +LK+F +M  R I++W ++IA           + +   M   
Sbjct: 289 VSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 348

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           GV PD    + +L  CS      +G+E    +    G+   +     +++M  + G ++ 
Sbjct: 349 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRN 407

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +  + M  + + + W  LISAC   GE K A
Sbjct: 408 SFQVFKLMKTK-DVVTWTALISACGMYGEGKKA 439



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 15/253 (5%)

Query: 68  VFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           VF   S  ++V  W+++I      GL ++A+ L+ + Q   + PD  T  +V++AC  L 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
             E+ K +   +        + + NALIDM+ +  D+DKA K+F  M  R +VSW S+I+
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 187 GLAMHGRGLEA-------VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           G   +G   EA       + LF EM+     PD +    +L AC H G ++ G+   D M
Sbjct: 190 GYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYM 248

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE--- 296
               G          +++M  + G +  + E    M  + + + W ++I+     G+   
Sbjct: 249 ITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGKMGD 306

Query: 297 -LKLAESITKRLI 308
            LK+ E++  R I
Sbjct: 307 SLKVFENMKARDI 319



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 5/219 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+P+  T   +L  C+ +     GK +HG + K     D+ V N L+ MY  C G +  
Sbjct: 349 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKC-GSLRN 407

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF  M  +D V+W+A+I      G    A+  F +M+ +G+ PD +  V ++ AC+ 
Sbjct: 408 SFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSH 467

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G +E G  +     +   +   +     ++D+ ++   +DKA     SM  +   S W 
Sbjct: 468 SGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWG 527

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           ++++   M G    A  + E ++E  + PDD  +  L+S
Sbjct: 528 ALLSACRMSGDTEIAERVSERIIE--LNPDDTGYYVLVS 564


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 297/469 (63%), Gaps = 4/469 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+ F LKAC  I  L   + VHG++++  +  D+ V   LV  YG   G +E+ R 
Sbjct: 108 PDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGR-NGCVEIARM 166

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M ERD V+W+AMI  Y++ G   +A+ ++  M+   V  D  T+V +LS+C+ +GA
Sbjct: 167 VFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGA 226

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +G  +     ++ + R+V + NALIDM+AKCG +D AL++F  M  R   +W S+I G
Sbjct: 227 LNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVG 285

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
             +HG G EA+  F +MLEAGV P+ +AF+GLL  CSH GLV++G E+F  M + F + P
Sbjct: 286 FGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKP 345

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            I+HYGC+VDM  R+G++++A E I   P + +P++WR L+S+      + + E   + L
Sbjct: 346 GIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNL 405

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
                ++  + VLL+ IYA     +   ++R+++ K+G+K  PG + IE+ ++++ FV  
Sbjct: 406 SQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVD 465

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL--DINEEDKEDALNKHSEKLAIAFA 425
           DKSH  S+ IY+ L+E+  K   AGYV   S+ +     +EE  E +   HSEKLAIAF 
Sbjct: 466 DKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFG 525

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           L KTP GT +RIVKNLRVC DCH  TKF+S+ +NR+I+VRDR RFHHFK
Sbjct: 526 LAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFK 574



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 128/275 (46%), Gaps = 5/275 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
           +L    G  +L   K +   V+     +   + N++++    S  G +   + +F  +  
Sbjct: 12  ILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILN 71

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKW 133
             + +W+++I G+A+      AI  + +M    V  PD  T    L AC  + AL+  + 
Sbjct: 72  PQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEE 131

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           V   I +    R V +C  L+  + + G V+ A  +F +M  R +V+W ++I+  +  G 
Sbjct: 132 VHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGY 191

Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
             EA+ +++ M    V  D    VGLLS+CSH G ++ G +    + ++ G++  +    
Sbjct: 192 HQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVK-LHRIASEKGLLRNVFVGN 250

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            ++DM  + G +  A E    MP +A    W ++I
Sbjct: 251 ALIDMYAKCGSLDGALEVFNGMPRDA--FTWNSMI 283



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 3/170 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V  + FT   +L +C+ +G LN+G  +H    +     ++ V N L+ MY  C G
Sbjct: 202 MRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKC-G 260

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF+ M  RD+ +W++MI G+   G   +AI  F QM  +GV P+ I  + +L 
Sbjct: 261 SLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLC 319

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
            C+  G +E G ++      K  V   +     ++DM+ + G ++KAL++
Sbjct: 320 GCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEI 369



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC--GDVDKALKLFR 171
            ++TVL  C +L  L   K +++ +    +     + N++++  A    G +  A  LFR
Sbjct: 11  AILTVLQGCNNLTRL---KKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFR 67

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVD 230
            +      +W S+I G A     ++A+  +  ML   V  PD   F   L AC     + 
Sbjct: 68  HILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALK 127

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           K  E   S+    G    +     +V    R+G V+ A      MP E + + W  +IS
Sbjct: 128 KCEEVHGSIIRT-GYERDVVVCTGLVRCYGRNGCVEIARMVFDNMP-ERDLVAWNAMIS 184


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 309/508 (60%), Gaps = 35/508 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAV--LKFQFGDDIHVQNTLVHMYGSC 58
           ML  GV+P++      L AC+ + +L+LG+ +H  V   + +  D++ V   L+ MY  C
Sbjct: 228 MLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKC 285

Query: 59  E-------------------------------GGIELGRKVFDEMSERDSVSWSAMIGGY 87
                                           G +++ R +FD+M  RD +++++MI GY
Sbjct: 286 GDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGY 345

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
              G   DA+ LF QM+  G+  D  T+V++L+AC  LGAL  G+ + + IE+++V   V
Sbjct: 346 IHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDV 405

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            L  AL+DM+ KCG VD+A  +F  M  R + +WT++IAGLA +G G +A+  F +M   
Sbjct: 406 YLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRD 465

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G  P  V ++ +L+ACSH  L+D+GR +F+ M++   + P++EHYGCM+D+L RSG + E
Sbjct: 466 GFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDE 525

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A   +Q MP++ N +IW +++SAC     + LA    + L+   P  ++ YV L +IY  
Sbjct: 526 AMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYID 585

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
             +W    ++R +M++RG+KK  G + I +  ++++FV  D+SH  + EI  M++E+  +
Sbjct: 586 SRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACR 645

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           +K  GY P TS + +D++EE+KE AL  HSEK+AIAF L+  PP  PI IVKNLRVC DC
Sbjct: 646 LKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDC 705

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSA K +S+++NREI+VRDR RFHHF+D
Sbjct: 706 HSAIKLVSQLWNREIIVRDRSRFHHFRD 733



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 155/358 (43%), Gaps = 71/358 (19%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLN--LGKSVHGAVLKFQFGDDIH-VQNTLVHMYGSCEGG 61
           GV    FT+ FV + CA        L   +H A L+         V N L+HMY S  G 
Sbjct: 97  GVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASM-GL 155

Query: 62  IELGRKVFDEMS-------------------------------ERDSVSWSAMIGGYARL 90
            +  R+ FDE+                                ER+ VSW+++I GY+R 
Sbjct: 156 TDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRA 215

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   DA+  F  M   GV PDE+ ++  LSAC+ L  L++G+ +   + ++ +  +  L 
Sbjct: 216 GRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLV 275

Query: 151 NALIDMFAKCGD--------------------------------VDKALKLFRSMNGRTI 178
            ALIDM+AKCGD                                VD A  LF  M  R +
Sbjct: 276 VALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDV 335

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +++ S+I G    GR  +A+ LF +M   G+  D+   V LL+AC+  G +  GR    S
Sbjct: 336 ITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHAS 395

Query: 239 MKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           ++    I+ +  + G  ++DM  + GRV EA     +M  E +   W  +I+     G
Sbjct: 396 IEQR--IVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERDVHTWTAMIAGLAFNG 450



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 28/207 (13%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           +I    + G +D+A +L      R +VSWTS+IAG +  GR  +AV  F  ML  GV PD
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPD 236

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG------------CMVDMLC 260
           +VA +G LSACS              +KN           G             ++DM  
Sbjct: 237 EVAVIGALSACS-------------KLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYA 283

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320
           + G + +A      +     P  W  +I   C  G + +A S+  ++ G   +   N ++
Sbjct: 284 KCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQM-GARDVITFNSMI 342

Query: 321 LSHIYAKLLRWEKKTKIREVMDKRGMK 347
             +I++  LR     ++   M + GM+
Sbjct: 343 TGYIHSGRLR--DALQLFMQMRRHGMR 367


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/498 (39%), Positives = 304/498 (61%), Gaps = 31/498 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML +G++P++ T   VL ACA + DL LG+S+H  V +       ++   L+ MY  C  
Sbjct: 230 MLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGD 289

Query: 59  -----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
                                         G +++ R +FDEM  RD +++++M+ GY  
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIH 349

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G   +A+ LF  M+   +  D  T+V +L+AC  LGAL+ G+ + + IE+++V   + L
Sbjct: 350 SGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYL 409

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+DM+ KCG VD+A  +F+ M  R + +WT++IAGLA +G G  A+  F +M   G 
Sbjct: 410 GTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGF 469

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V+++ +L+ACSH  L+++GR YFD M+  + I P+IEHYGCM+D+L RSG + EA 
Sbjct: 470 QPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAM 529

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + ++ MPI+ N +IW +++SAC     + LA+   + L+  EP  +  YV L +IY    
Sbjct: 530 DLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSR 589

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +WE  +KIR +M++R +KK  G + I +  ++++FV  DKSH +  EI  ML+E+  ++K
Sbjct: 590 QWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLK 649

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P TS++ +D++EE+KE AL  HSEKLAIAF L+   P  P+ I KNLRVC DCHS
Sbjct: 650 SLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHS 709

Query: 450 ATKFISKIYNREIVVRDR 467
           A K IS+++NREI+VRDR
Sbjct: 710 AIKLISRLWNREIIVRDR 727



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 151/347 (43%), Gaps = 79/347 (22%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIG---DLNLGKSVHGAVLKFQFGDDI-HVQNTLVHMYG 56
           M   GV P+ FT+ F+ K  +       L L   +H A L+         V N+L+HMY 
Sbjct: 94  MRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMY- 152

Query: 57  SCEGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTD---------------- 95
                I LG     R+ FDE+  +D+V+W+ +I G A++G+  D                
Sbjct: 153 -----IRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW 207

Query: 96  ---------------AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
                          A+  F+ M   G+ PDE+T++ VLSAC  L  LE+G+ +   +E+
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEE 267

Query: 141 QMVNRSVGLCNALIDMFAKCGD--------------------------------VDKALK 168
           + +  S  L  ALIDM+AKCGD                                VD A  
Sbjct: 268 KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARS 327

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           LF  M  R I+++ S++ G    G+  EA+ LF  M    +  D+   V LL+AC+  G 
Sbjct: 328 LFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGA 387

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           + +GR     ++    +   I     ++DM  + GRV EA    Q+M
Sbjct: 388 LQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRVDEATIVFQRM 433


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 269/413 (65%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I L + VFDEM  +  +SW+AM+  Y    +  +A++LF +MQ  G+ PD +T+ TVL +
Sbjct: 242 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 301

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C ++ AL +GK +   I+++ +  S+ L NAL+DM+A CG + +A  +F SM  R +VSW
Sbjct: 302 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 361

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+I+    HG G EA+ LFE+M   G+ PD +AFV +L+ACSH GL+D G+ YF SM +
Sbjct: 362 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTS 421

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           +F I PK+EHY CMVD+L R+G ++EA++FI  MPI+ N  +W  L+ AC     + +  
Sbjct: 422 EFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 481

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
                L+   P     YVLLS+IYA+  RW   + +R VM+ +G+KK+PG +  EL + +
Sbjct: 482 LAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRV 541

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD SH QSK IY+ L E+ R++++ GY P     L D+ EEDKE  L+ HSEKLA
Sbjct: 542 HTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLA 601

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAF L+ T PGTPIRI  NLR C+DCH A K IS I  REI+++D +R H+ K
Sbjct: 602 IAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 41/309 (13%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +TYP  LK+CA    L LG+ +H +  +     ++ V ++ + MY  C G  +   +
Sbjct: 120 PDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARC-GRPDDAYQ 178

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVTVLSACTDL 125
           +F+EM  RD VSW+AMI G+A  GL   A+D+FR++ ++  C  PD  TM ++L +    
Sbjct: 179 MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFREL-VALQCPKPDAGTMASILPS---- 233

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
               +GK                         A+  D+     +F  M  + ++SW +++
Sbjct: 234 ----MGK-------------------------ARVEDIALLKGVFDEMRFKGLISWNAML 264

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           A    +   +EAV LF  M + G+ PD V    +L +C     +  G+   + +K    +
Sbjct: 265 AVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRR-RM 323

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     ++DM    G +KEA +    M    + + W ++ISA    G  + A  + +
Sbjct: 324 CSSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFE 382

Query: 306 RLIGN--EP 312
           ++ G   EP
Sbjct: 383 KMCGQGLEP 391



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  T   VL +C  +  L+LGK +H  + + +    + ++N L+ MY +C G
Sbjct: 283 MQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC-G 341

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD M  RD VSW+++I  Y R G   +AIDLF +M   G+ PD I  V +L+
Sbjct: 342 CLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILA 401

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+  G L++GK +  S   +  +   +     ++D+  + G + +A      M    N 
Sbjct: 402 ACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNE 461

Query: 176 RTIVSWTSVIAGLAMHG 192
           R    W +++    +H 
Sbjct: 462 RV---WGALLGACRIHS 475



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VC-PDEITMVTVLSACTDL 125
           V D   +R +V ++ ++ G     L  DA+ LF  M+  G  C PD  T    L +C   
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G+ + S   +  ++ +V + ++ I M+A+CG  D A ++F  M  R +VSW ++I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKG--REYFDSMKND 242
           +G A  G    A+ +F E++    P PD      +L +     + D    +  FD M+  
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKL 299
            G+I     +  M+ +   +    EA E   +M    IE + +   T++ +C     L L
Sbjct: 256 -GLIS----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 310

Query: 300 AESI 303
            + I
Sbjct: 311 GKRI 314


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/472 (40%), Positives = 289/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N  T+  +L     +  L  GK +H  V +  +  D  V   L+ +YG CE   + 
Sbjct: 302 GVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ- 360

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+F +M  +D ++W+ M   YA+ G   +A+ LF++MQ+ G  P   T+V VL  C  
Sbjct: 361 AWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAH 420

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L AL+ G+ + S I +      + +  ALI+M+ KCG + +A+ +F  M  R I+ W S+
Sbjct: 421 LAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSM 480

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           +   A HG   E + LF +M   GV  D V+FV +LSA SH G V  G +YF +M  DF 
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 540

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESI 303
           I P  E YGC+VD+L R+GR++EA + + K+     + I+W TL+ AC    +   A++ 
Sbjct: 541 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAA 600

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            ++++  +P H   YV+LS++YA    W+   ++R++M  RG+KK PG + IE+ N ++E
Sbjct: 601 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHE 660

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F+ GD+SH +   IY  LD +  +M+ AGY+P T  +L D+ +E KED L  HSE+LAIA
Sbjct: 661 FLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIA 720

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ TPPGTP+R++KNLRVC+DCH+ATK+ISK+  REI+VRD HRFH+FKD
Sbjct: 721 FGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKD 772



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 152/292 (52%), Gaps = 5/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PNK T   V  A      L+ GK V+G V       D+ V N+ V+M+G+  G +  
Sbjct: 201 GVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNA-GLLGD 259

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F++M +RD V+W+ +I  Y +     +A+ LF ++Q  GV  ++IT V +L+  T 
Sbjct: 260 ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L  GK +   +++   +R   +  AL+ ++ +C    +A K+F  M  + +++WT +
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDF 243
               A +G   EA+ LF+EM   G  P     V +L  C+H   + KGR+     ++N F
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +   +E    +++M  + G++ EA    +KM  + + ++W +++ A    G
Sbjct: 440 RMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHG 488



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 167/378 (44%), Gaps = 35/378 (9%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V P K TY  +L ACA    L  G  +HG +L+  F  D+ V   L++MY  C G
Sbjct: 96  MQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKC-G 154

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +      F  +  RD VSW+AMI    +      A  L+R+MQ+ GV P++IT+ TV +
Sbjct: 155 SVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFN 214

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D   L  GK+V   +   ++   V + N+ ++MF   G +  A +LF  M  R +V+
Sbjct: 215 AYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVT 274

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  VI     +    EAV LF  + + GV  +D+ FV +L+  +    + KG+   + +K
Sbjct: 275 WNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVK 334

Query: 241 -----NDFGIIPKI-----------EHYGCMVDM----------LC----RSGRVKEAHE 270
                 D  +   +           + +   VDM          +C    ++G  KEA +
Sbjct: 335 EAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQ 394

Query: 271 FIQKMPIEANPIIWRTLIS---ACCARGELKLAESITKRLIGNE-PMHESNYVLLSHIYA 326
             Q+M +E       TL++    C     L+    I   +I N   M       L ++Y 
Sbjct: 395 LFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYG 454

Query: 327 KLLRWEKKTKIREVMDKR 344
           K  +  +   + E M KR
Sbjct: 455 KCGKMAEAMSVFEKMAKR 472



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 161/343 (46%), Gaps = 6/343 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+   +  +L+ C+   +++ G+ VH  V    F  +  V   L+ MY  C G +   ++
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQC-GSVPEAQQ 60

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ +  +D  +W+ MIG Y + G    A+ +F QMQ   V P ++T V +L+AC    +
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ G  +   I +Q     V +  ALI+M+ KCG V  A   F+ +  R +VSWT++IA 
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              H +   A  L+  M   GV P+ +    + +A      + +G+  +  + +  G++ 
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSS--GVME 238

Query: 248 K-IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
             +      V+M   +G + +A    + M ++ + + W  +I+          A  +  R
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGR 297

Query: 307 LIGNE-PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           L  +    ++  +VL+ ++Y  L    K   I E++ + G  +
Sbjct: 298 LQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDR 340


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 269/413 (65%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I L + VFDEM  +  +SW+AM+  Y    +  +A++LF +MQ  G+ PD +T+ TVL +
Sbjct: 132 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 191

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C ++ AL +GK +   I+++ +  S+ L NAL+DM+A CG + +A  +F SM  R +VSW
Sbjct: 192 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 251

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+I+    HG G EA+ LFE+M   G+ PD +AFV +L+ACSH GL+D G+ YF SM +
Sbjct: 252 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTS 311

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           +F I PK+EHY CMVD+L R+G ++EA++FI  MPI+ N  +W  L+ AC     + +  
Sbjct: 312 EFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 371

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
                L+   P     YVLLS+IYA+  RW   + +R VM+ +G+KK+PG +  EL + +
Sbjct: 372 LAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRV 431

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD SH QSK IY+ L E+ R++++ GY P     L D+ EEDKE  L+ HSEKLA
Sbjct: 432 HTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLA 491

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAF L+ T PGTPIRI  NLR C+DCH A K IS I  REI+++D +R H+ K
Sbjct: 492 IAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 140/312 (44%), Gaps = 41/312 (13%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P     P   K+CA    L LG+ +H +  +     ++ V ++ + MY  C G  + 
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARC-GRPDD 65

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVTVLSAC 122
             ++F+EM  RD VSW+AMI G+A  GL   A+D+FR++ ++  C  PD  TM ++L + 
Sbjct: 66  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFREL-VALQCPKPDAGTMASILPS- 123

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
                  +GK                         A+  D+     +F  M  + ++SW 
Sbjct: 124 -------MGK-------------------------ARVEDIALLKGVFDEMRFKGLISWN 151

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++A    +   +EAV LF  M + G+ PD V    +L +C     +  G+   + +K  
Sbjct: 152 AMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRR 211

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
             +   +     ++DM    G +KEA +    M    + + W ++ISA    G  + A  
Sbjct: 212 -RMCSSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVSWTSIISAYGRHGHGREAID 269

Query: 303 ITKRLIGN--EP 312
           + +++ G   EP
Sbjct: 270 LFEKMCGQGLEP 281



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 9/196 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  T   VL +C  +  L+LGK +H  + + +    + ++N L+ MY +C G
Sbjct: 173 MQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC-G 231

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD M  RD VSW+++I  Y R G   +AIDLF +M   G+ PD I  V +L+
Sbjct: 232 CLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILA 291

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+  G L++GK +  S   +  +   +     ++D+  + G + +A      M    N 
Sbjct: 292 ACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNE 351

Query: 176 RTIVSWTSVIAGLAMH 191
           R    W +++    +H
Sbjct: 352 RV---WGALLGACRIH 364


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 290/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    +  N+ T   VLK+ A +  + + K +H   +K     D +V N+L+  YG C  
Sbjct: 376 MFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH 435

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+   K+F+E +  D V++++MI  Y++ G   +A+ L+ QMQ + + PD     ++L+
Sbjct: 436 -IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLN 494

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L A E GK +     K      +   N+L++M+AKCG ++ A + F  +  R IVS
Sbjct: 495 ACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVS 554

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G A HG G EA+ LF +ML  GVPP+ +  V +L AC+H GLV++G++YF+ M+
Sbjct: 555 WSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKME 614

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P  EHY CM+D+L RSG++ EA E +  +P EA+  +W  L+ A      ++L 
Sbjct: 615 VMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELG 674

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   K L   EP     +VLL++IYA    WE   K+R+ M    +KK PG + IE+ ++
Sbjct: 675 QKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDK 734

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD+SH +S EIY  LD++G  + KAGY       + ++++ +KE  L  HSEKL
Sbjct: 735 VYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKL 794

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ TPPG PIR+ KNLR+C DCH+  KF+ KI +REI+VRD +RFHHFKD
Sbjct: 795 AVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKD 849



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 3/307 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+FT+P VLKAC+   DLN+G+ VHG  +   F  D  V NTLV MY  C G ++ 
Sbjct: 77  GVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKC-GLLDD 135

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F  + ER+ VSW+A+   Y +  L  +A+ LF++M  SG+ P+E ++  +L+AC  
Sbjct: 136 SRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAG 195

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L   ++G+ +   + K  ++      NAL+DM++K G+++ A+ +F+ +    +VSW ++
Sbjct: 196 LQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAI 255

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG  +H     A+ L +EM  +G  P+       L AC+  G  + GR+   S+     
Sbjct: 256 IAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDA 315

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                   G +VDM  +   + +A      MP + + I W  LIS     G+   A S+ 
Sbjct: 316 HSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGDHLDAVSLF 373

Query: 305 KRLIGNE 311
            ++   +
Sbjct: 374 SKMFSED 380



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 7/313 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT    LKACA +G   LG+ +H +++K     D+     LV MY  CE  ++ 
Sbjct: 279 GTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM-MDD 337

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+ +D M ++D ++W+A+I GY++ G   DA+ LF +M    +  ++ T+ TVL +   
Sbjct: 338 ARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVAS 397

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A++V K + +   K  +     + N+L+D + KC  +D+A K+F       +V++TS+
Sbjct: 398 LQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSM 457

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I   + +G G EA+ L+ +M +A + PD      LL+AC++    ++G++ +  ++K  F
Sbjct: 458 ITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK--F 515

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G +  I     +V+M  + G +++A     ++P     + W  +I      G  K A  +
Sbjct: 516 GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 304 TKRLI--GNEPMH 314
             +++  G  P H
Sbjct: 575 FNQMLRDGVPPNH 587



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 200/468 (42%), Gaps = 58/468 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN+F+   +L ACAG+ + +LG+ +HG +LK     D    N LV MY S  G
Sbjct: 174 MVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMY-SKAG 232

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE    VF +++  D VSW+A+I G      +  A+ L  +M+ SG  P+  T+ + L 
Sbjct: 233 EIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G  E+G+ + S + K   +  +     L+DM++KC  +D A + + SM  + I++
Sbjct: 293 ACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-----------------------------------L 205
           W ++I+G +  G  L+AV+LF +M                                   +
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           ++G+  D      LL     C  +D+  + F+    +      +  Y  M+    + G  
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWE-----DLVAYTSMITAYSQYGDG 467

Query: 266 KEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
           +EA +    +Q   I+ +P I  +L++AC      +  + +         +H   +  + 
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLH--------VHAIKFGFMC 519

Query: 323 HIYAKLLRWEKKTKIREVMDK-RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
            I+A         K   + D  R   +IP   ++         + G   H   KE   + 
Sbjct: 520 DIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWS----AMIGGYAQHGHGKEALRLF 575

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKT 429
           ++M R      ++   S VL   N     +   ++ EK+ + F +  T
Sbjct: 576 NQMLRDGVPPNHITLVS-VLCACNHAGLVNEGKQYFEKMEVMFGIKPT 622



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 3/260 (1%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  ++KF F  D  ++N LV +Y  C       RK+ DE SE D VSWS+++ GY + G
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRR-FGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
              +A+ +F +M + GV  +E T  +VL AC+    L +G+ V              + N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
            L+ M+AKCG +D + +LF  +  R +VSW ++ +         EAV LF+EM+ +G+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           ++ +   +L+AC+     D GR+    M    G+         +VDM  ++G ++ A   
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 272 IQKMPIEANPIIWRTLISAC 291
            Q +    + + W  +I+ C
Sbjct: 241 FQDIA-HPDVVSWNAIIAGC 259


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 303/512 (59%), Gaps = 38/512 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M +  V P++     ++ AC   G++   ++++  +++     D H+   LV MY   G 
Sbjct: 203 MKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGC 262

Query: 58  CEGGIELGRK---------------------------VFDEMSERDSVSWSAMIGGYARL 90
            +   E  RK                           +FD+  ++D V W+ MI  Y   
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
               +A+ +F +M  SG+ PD ++M +V+SAC +LG L+  KWV S I    +   + + 
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           NALI+M+AKCG +D    +F  M  R +VSW+S+I  L+MHG   +A++LF  M +  V 
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           P++V FVG+L  CSH GLV++G++ F SM +++ I PK+EHYGCMVD+  R+  ++EA E
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALE 502

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I+ MP+ +N +IW +L+SAC   GEL+L +   KR++  EP H+   VL+S+IYA+  R
Sbjct: 503 VIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQR 562

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           WE    IR VM+++ + K  G + I+ + + +EF+ GDK H QS EIY  LDE+  K+K 
Sbjct: 563 WEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKL 622

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL-------KTPPGTPIRIVKNLRV 443
           AGYVP    VL+D+ EE+K+D +  HSEKLA+ F L+       K   G  IRIVKNLRV
Sbjct: 623 AGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRV 681

Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           C DCH   K +SK+Y REI+VRDR RFH +K+
Sbjct: 682 CEDCHLFFKLVSKVYEREIIVRDRTRFHCYKN 713



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 34/330 (10%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++F++  +LKA + +  L  G  +HG   K     D  V+   + MY SC G I   R V
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASC-GRINYARNV 168

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEMS RD V+W+ MI  Y R GL  +A  LF +M+ S V PDE+ +  ++SAC   G +
Sbjct: 169 FDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT----------- 177
              + +  F+ +  V     L  AL+ M+A  G +D A + FR M+ R            
Sbjct: 229 RYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGY 288

Query: 178 --------------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                               +V WT++I+         EA+ +FEEM  +G+ PD V+  
Sbjct: 289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF 348

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++SAC++ G++DK + +  S  +  G+  ++     +++M  + G +    +  +KMP 
Sbjct: 349 SVISACANLGILDKAK-WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP- 406

Query: 278 EANPIIWRTLISACCARGELKLAESITKRL 307
             N + W ++I+A    GE   A S+  R+
Sbjct: 407 RRNVVSWSSMINALSMHGEASDALSLFARM 436


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/470 (41%), Positives = 284/470 (60%), Gaps = 31/470 (6%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC----------------------------- 58
           +G  VH   +K     D++V+N L+H YG C                             
Sbjct: 148 MGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGY 207

Query: 59  --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G + + R+VFD M  RD VSWS ++GGY + G    A+ +F+ M + GV  +E  +V
Sbjct: 208 VRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIV 267

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T LSA   LG LE GK+V   I++  V  S+ L  AL+DM++KCG V  A ++F +M  R
Sbjct: 268 TALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWR 327

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W S+I GLA HG G +AV LFE+ +  G  P ++ FVG+L+ACS  GLVD+GR YF
Sbjct: 328 DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYF 387

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             M   +GI  ++EHYGCMVD+L R+G V+EA E I+ M I  +P++W T++SAC   G 
Sbjct: 388 KLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGL 447

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + L  ++  +LI  +P H+  YVLL+ IYAK  +W++  K+R++M  RG  K  G +L+E
Sbjct: 448 VDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLME 507

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
               +++F+ GD  H  S +IY ML  + R++ +AGYVP  S VL DI +E+K  A+  H
Sbjct: 508 AHGIVHKFLVGDMDHKDSVQIYNMLCMIDRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVH 567

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           SE+LAIA+  +    G+PIRIVKNL VC DCH  +K ++K++ REI+VRD
Sbjct: 568 SERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIIVRD 617


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 301/510 (59%), Gaps = 40/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---FQFGDDIHVQNTLVHMYGS 57
           M+  G+  ++FTYP V++ACA  G L LGK VH  VL+   F F    H  N+LV +Y  
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF----HFDNSLVSLYYK 332

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGY------------------------------ 87
           C G  +  R +F++M  +D VSW+A++ GY                              
Sbjct: 333 C-GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISG 391

Query: 88  -ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
            A  G   + + LF  M+  G  P +      + +C  LGA   G+   + + K   + S
Sbjct: 392 LAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSS 451

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           +   NALI M+AKCG V++A ++FR+M     VSW ++IA L  HG G EAV ++EEML+
Sbjct: 452 LSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLK 511

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
            G+ PD +  + +L+ACSH GLVD+GR+YFDSM+  + I P  +HY  ++D+LCRSG+  
Sbjct: 512 KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFS 571

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           +A   I+ +P +    IW  L+S C   G ++L      +L G  P H+  Y+LLS+++A
Sbjct: 572 DAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHA 631

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
              +WE+  ++R++M  RG+KK    + IE++ +++ F+  D SH +++ +Y  L ++G+
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGK 691

Query: 387 KMKKAGYVPTTSEVLLDINEE-DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
           +M++ GYVP TS VL D+  +  KED L  HSEK+A+AF L+K PPGT IRI KNLR C 
Sbjct: 692 EMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+  +F+S +  R+I++RDR RFHHF++
Sbjct: 752 DCHNFFRFLSWVVQRDIILRDRKRFHHFRN 781



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 150/358 (41%), Gaps = 70/358 (19%)

Query: 5   GVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G  P+ FT+  VL   A + D        H A LK   G    V N LV +Y  C     
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202

Query: 64  L---GRKVFDEMSERDSVSWS--------------------------------AMIGGYA 88
           L    RKVFDE+ E+D  SW+                                AMI GY 
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             G   +A+++ R+M  SG+  DE T  +V+ AC   G L++GK V +++ ++  + S  
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFH 321

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------------ 184
             N+L+ ++ KCG  D+A  +F  M  + +VSW ++                        
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 185 -------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
                  I+GLA +G G E + LF  M   G  P D AF G + +C+  G    G++Y  
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHA 441

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +    G    +     ++ M  + G V+EA +  + MP   + + W  LI+A    G
Sbjct: 442 QLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHG 497



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 150/357 (42%), Gaps = 84/357 (23%)

Query: 26  LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-IELGRKVFDEMSE---------- 74
           L L ++VHG ++ F F    H+ N L+ +Y  C+   +   R++FDE+SE          
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVY--CKSSELNYARQLFDEISEPDKIARTTMV 87

Query: 75  -----------------------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD 111
                                  RD+V ++AMI G++       AI+LF +M+  G  PD
Sbjct: 88  SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 112 EITMVTVLSACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKCGD----VDK 165
             T  +VL+    L A +  + V+  +   K        + NAL+ +++KC      +  
Sbjct: 148 NFTFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHS 206

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHG------------------------------RGL 195
           A K+F  +  +   SWT+++ G   +G                              RG 
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGF 266

Query: 196 --EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM--KNDFGIIPKIEH 251
             EA+ +   M+ +G+  D+  +  ++ AC+  GL+  G++    +  + DF       H
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----H 321

Query: 252 Y-GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +   +V +  + G+  EA    +KMP + + + W  L+S   + G +  A+ I K +
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEM 377


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/479 (42%), Positives = 304/479 (63%), Gaps = 6/479 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M++ G+ PNK T+   L A   +  L LGK +H  +LK    +D  V N L+  Y    G
Sbjct: 577  MMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAK-SG 635

Query: 61   GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++   ++F  MS  RD++SW++MI GY   G   +A+D    M  S    D  T   VL
Sbjct: 636  DVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVL 695

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            +AC  + ALE G  + +F  +  +   V + +AL+DM++KCG +D A K+F SM+ +   
Sbjct: 696  NACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEF 755

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            SW S+I+G A HG G +A+ +FEEM E+G  PD V FV +LSACSH GLV++G +YF+ M
Sbjct: 756  SWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM 815

Query: 240  KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA---RGE 296
            + D+GI+P+IEHY C++D+L R+G + +  E++++MP++ N +IWRT++ AC     R +
Sbjct: 816  E-DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAK 874

Query: 297  LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
            + L    ++ L+  EP +  NYVL S  +A + RWE   K R  M    +KK  G + + 
Sbjct: 875  IDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVT 934

Query: 357  LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
            L + ++ F+ GD+SH  +KEIYE L+ + +K++ AGYVP T  VL D+ EE+KE+ L  H
Sbjct: 935  LTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYH 994

Query: 417  SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            SEKLA+AF L ++  G PIRI+KNLRVC DCH+A ++IS+I  R+I++RD  RFHHFKD
Sbjct: 995  SEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKD 1053



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 164/330 (49%), Gaps = 15/330 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  + P+ F     L +CAG+G L  G+ +H   +K+    D  V N LV MYG C G
Sbjct: 475 MRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGEC-G 533

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVL 119
            +    ++F+ MS  D VSW++++G  A      T+++ +F  M  SG+ P+++T V  L
Sbjct: 534 RMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFL 593

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           +A T L  LE+GK + S + K  V     + NAL+  +AK GDVD   +LF  M+GR   
Sbjct: 594 AALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDA 653

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +SW S+I+G   +G   EA+     M+ +    D   F  +L+AC+    +++G E    
Sbjct: 654 ISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEM--- 710

Query: 239 MKNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
             + FG+   +E        +VDM  + GR+  A +    M  + N   W ++IS     
Sbjct: 711 --HAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMS-QKNEFSWNSMISGYARH 767

Query: 295 GELKLAESITKRL--IGNEPMHESNYVLLS 322
           G  + A  I + +   G  P H +   +LS
Sbjct: 768 GLGRKALEIFEEMQESGESPDHVTFVSVLS 797



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 8/311 (2%)

Query: 9   NKFTYPFVLKACAGIGD----LNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIE 63
           N  TY  +L A A        L  G+ VH  VL+       I V N LV+MY  C G I+
Sbjct: 377 NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKC-GAID 435

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              +VF  M  RD +SW+ +I    + G    A+  +  M+ + + P     ++ LS+C 
Sbjct: 436 KACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCA 495

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LG L  G+ +     K  +     + NAL+ M+ +CG + +  ++F SM+   +VSW S
Sbjct: 496 GLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNS 555

Query: 184 VIAGLAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++  +A     + E+V +F  M+++G+ P+ V FV  L+A +   +++ G++    M   
Sbjct: 556 IMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKH 615

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+         ++    +SG V        +M    + I W ++IS     G L+ A  
Sbjct: 616 -GVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMD 674

Query: 303 ITKRLIGNEPM 313
               ++ +E M
Sbjct: 675 CVCLMMHSEQM 685



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 157/331 (47%), Gaps = 17/331 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSV--HGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           G  P  FT+  VL+AC   G   LG +V  HG V K +F  +  V N L+ MYGSC  G 
Sbjct: 163 GCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGP 222

Query: 63  E-LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGV--CPDEITMVT 117
             L ++VFD    RD ++W+A++  YA+ G +     LFR MQ   SG+   P E T  +
Sbjct: 223 PILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGS 282

Query: 118 VLSACTDLGALEVGKWVESFIE--KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +++A T L +  +G   + F+   K   +  + + +AL+  FA+ G +D+A  ++  +  
Sbjct: 283 LITA-TYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKE 341

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD----K 231
           R  V+   +IAGL     G  A  +F    ++     D  +V LLSA +     +    K
Sbjct: 342 RNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDT-YVVLLSAIAEFSTAEQGLRK 400

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           GRE    +     I  KI     +V+M  + G + +A    Q M    + I W T+I+A 
Sbjct: 401 GREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEAR-DRISWNTIITAL 459

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLS 322
              G  + A  +   L+    +  SN+  +S
Sbjct: 460 DQNGYCE-AAMMNYCLMRQNSIGPSNFAAIS 489



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 160/377 (42%), Gaps = 60/377 (15%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           +S+H  V+K     D+ + N LV+ Y      ++  R+VFD M  R++VSW+ +I G+  
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAK-GARLDAARRVFDGMPGRNAVSWTCLISGHVL 143

Query: 90  LGLSTDAIDLFRQM--QISGVCPDEITMVTVLSACTDLGALEVGKWVE--SFIEKQMVNR 145
            GL  DA  LFR M  +  G  P   T  +VL AC D G   +G  V+    + K     
Sbjct: 144 SGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTS 203

Query: 146 SVGLCNALIDMFAKC--GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
           +  +CNALI M+  C  G    A ++F +   R +++W ++++  A  G  +    LF  
Sbjct: 204 NTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRA 263

Query: 204 ML--EAGVP--PDDVAFVGL-----LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
           M   ++G+   P +  F  L     LS+CS  GL+D+             +  ++   GC
Sbjct: 264 MQYDDSGIELRPTEHTFGSLITATYLSSCS-LGLLDQ-------------LFVRVLKSGC 309

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
             D+   S                        L+SA    G L  A+ I   L       
Sbjct: 310 SSDLYVGSA-----------------------LVSAFARHGMLDEAKDIYLGL------K 340

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREV-MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
           E N V L+ + A L++ +      E+ M  R    +   T + L + I EF   ++   +
Sbjct: 341 ERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRK 400

Query: 374 SKEIYEMLDEMGRKMKK 390
            +E++  +   G   +K
Sbjct: 401 GREVHAHVLRAGHIYRK 417


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/534 (39%), Positives = 308/534 (57%), Gaps = 65/534 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ F++ FV+KA A    L  G  +H   LK      + V  TL+ MYG C G +   
Sbjct: 269 IFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGEC-GCVGFA 327

Query: 66  RKVFDEMSE-------------------------------RDSVSWSAMIGGYARLG--- 91
           RKVFDEM +                               R+  SW+ M+ GY + G   
Sbjct: 328 RKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELE 387

Query: 92  ----------------LST------------DAIDLFRQMQISGVCPDEITMVTVLSACT 123
                            ST            ++   FR++  + + P+E+++  VLSAC+
Sbjct: 388 CAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACS 447

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
             GA E GK +  F+EK   +  V + NALIDM+++CG+V  A  +F  M   R+IVSWT
Sbjct: 448 QSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWT 507

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+IAGLAMHG G EA+ +F EM E+GV PD+++F+ LL ACSH GL+ +G  YF  MK  
Sbjct: 508 SMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRV 567

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P +EHYGCMVD+  RSG++++A+ FI +MPI    I+WRTL+ AC + G ++LAE 
Sbjct: 568 YHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 627

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
           + +RL   +P +  + VLLS++YA   +W+    IR+ M  + +KKI   +L+E+   +Y
Sbjct: 628 VKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMY 687

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +F   +K      E +E L E+  +++ +AGY P  +  L D+ EE+KED ++KHSEKLA
Sbjct: 688 KFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQVSKHSEKLA 747

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AFAL + P G  IRIVKNLR+C DCH+  K  S++Y  EIV+RDR+RFH FKD
Sbjct: 748 LAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKD 801



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   + PN+ +   VL AC+  G    GK++HG V K  +   + V N L+ MY  C G
Sbjct: 427 LLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRC-G 485

Query: 61  GIELGRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            + + R VF+ M E+ S VSW++MI G A  G   +AI +F +M  SGV PDEI+ +++L
Sbjct: 486 NVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLL 545

Query: 120 SACTDLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
            AC+  G ++ G+   S +++   +  +V     ++D++ + G + KA      M    T
Sbjct: 546 YACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPT 605

Query: 178 IVSWTSVIAGLAMHG 192
            + W +++   + HG
Sbjct: 606 AIVWRTLLGACSSHG 620



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 14/284 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLV-HMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           +L     +HG  +K     D +    L+ H   S    +   R++     E D+  ++ +
Sbjct: 184 NLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 243

Query: 84  IGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           + GY+      +++ +F +M   G + PD  +   V+ A  +  +L  G  +     K  
Sbjct: 244 VRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHG 303

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++  + +   LI M+ +CG V  A K+F  M    +V+W +V+           A  +F+
Sbjct: 304 LDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFD 363

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           +ML       +V   G + A    G ++  +  F  M +   +      +  M+     +
Sbjct: 364 KMLVRNHTSWNVMLAGYIKA----GELECAKRIFSEMPHRDDV-----SWSTMIVGFSHN 414

Query: 263 GRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESI 303
           G   E+  + +++    +  N +    ++SAC   G  +  +++
Sbjct: 415 GSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTL 458


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/501 (42%), Positives = 310/501 (61%), Gaps = 44/501 (8%)

Query: 17  LKACA--GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY------------------- 55
           L ACA  G GD  +G  +H  V+KF F     V N L+++Y                   
Sbjct: 128 LNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVR 187

Query: 56  ----GSC--EG-----GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
                SC  EG      +E GR +FDEM ER+ V+W+ MI GY   G + +A  L ++M 
Sbjct: 188 SVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMV 247

Query: 105 IS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGD 162
              G     +T+ +VLSAC+  G + VG+WV  +  K+M ++  V +  +L+DM+AKCG 
Sbjct: 248 FGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGR 307

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           ++ AL +FRSM  R +V+W +++ GLAMHG G  AV +F  M+E  V PD V F+ LLSA
Sbjct: 308 INAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE-VKPDGVTFMALLSA 366

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH GLV+KG +YF  ++  + I P+IEHY CMV +L R+GR++EA   ++ M I  N +
Sbjct: 367 CSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEV 426

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           +  +LI +C A G L+L E I + L+  +P++   +++LS++YA   + EK   +R+V+ 
Sbjct: 427 VLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLK 486

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTS-EVL 401
           KRG+KK+PG + I +D ++++F+ GDKSH ++ EIY  LDEM  +++ AGYVP TS +VL
Sbjct: 487 KRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVL 546

Query: 402 L------DINE--EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
                  D +E  E+ E  L  HSEKLA+ F L+ TP G+P+ I KNLR+C DCHSA K 
Sbjct: 547 FGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKI 606

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
            SK+Y REIVVRDR+RFH FK
Sbjct: 607 ASKVYKREIVVRDRYRFHSFK 627



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 146/327 (44%), Gaps = 52/327 (15%)

Query: 16  VLKACAGIGDLNLGKSVHG-AVLKFQFGDDIH-VQNTLVHMYGSCEGGIELGRKVFDEM- 72
           +L+ C+    L  G+ +H  A++        H ++N L+H+YGSC       RK+FDE+ 
Sbjct: 26  LLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSH-ARKLFDEIP 84

Query: 73  -SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA--LE 129
            S +DSV ++A+I    R     +++ LF QM+   +  D + MV  L+AC  LG    +
Sbjct: 85  QSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGDTK 140

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS--------- 180
           VG  +   + K    +   +CNAL++++ K G V +A K+F  +  R++VS         
Sbjct: 141 VGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLV 200

Query: 181 ----------------------WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFV 217
                                 WT +I G   +G   EA  L +EM+   G     V   
Sbjct: 201 KWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLC 260

Query: 218 GLLSACSHCGLVDKGR----EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
            +LSACS  G V  GR         M  DFG++        +VDM  + GR+  A    +
Sbjct: 261 SVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTS----LVDMYAKCGRINAALSVFR 316

Query: 274 KMPIEANPIIWRTLISACCARGELKLA 300
            M ++ N + W  ++      G  K+A
Sbjct: 317 SM-LKRNVVAWNAMLGGLAMHGMGKIA 342


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 314/476 (65%), Gaps = 7/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P++ T+  V+ AC+  GD  L  S+   + + +   +  V+  L+ MY    G
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF-G 309

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            ++  RK+F+ M  R+ V+W++MI GYA+ G S  AI+LF++M  +  + PDE+TMV+V+
Sbjct: 310 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LGALE+G WV  F+ +  +  S+   NA+I M+++CG ++ A ++F+ M  R +V
Sbjct: 370 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 429

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ ++I+G A HG G+EA+ L   M E G+ PD V F+G+L+ACSH GL+++GR+ F+S+
Sbjct: 430 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 489

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K+     P I+HY CMVD+L R G +++A   +++MP+E +  ++ +L++A     +++L
Sbjct: 490 KD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVEL 544

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E    +L   EP +  N++LLS+IYA   RW+   +IRE M K G+KK  G + +E   
Sbjct: 545 GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGG 604

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++++F+  D+SH +S +IY++L E+ +KM++AGY+   S VL D+ EE+KE+ +  HSEK
Sbjct: 605 KLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEK 664

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI +ALL +  G  IR+VKNLRVC DCH+A K ISK+  R I+VRD +RFH F D
Sbjct: 665 LAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFND 720



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 138/235 (58%), Gaps = 3/235 (1%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E  R+ FD M ER  VSW+AM+ GYA+ GL+ +A+ LF +M  +G+ PDE T VTV+SA
Sbjct: 210 LEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISA 269

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C+  G   +   +   + ++ +  +  +  AL+DM+AK GD+D A KLF +M GR +V+W
Sbjct: 270 CSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTW 329

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            S+IAG A +G+   A+ LF+EM+ A  + PD+V  V ++SAC H G ++ G  +     
Sbjct: 330 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFL 388

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +  I   I  +  M+ M  R G +++A    Q+M    + + + TLIS   A G
Sbjct: 389 TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHG 442



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 55/327 (16%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ F YP ++K+ AG G    G   H  VLK   G D  V+N ++ MY    G I  
Sbjct: 95  GVRPDAFVYPILIKS-AGTG----GIGFHAHVLKLGHGSDAFVRNAVIDMYARL-GPIGH 148

Query: 65  GRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
            RKVFDE+   ER    W+AM+ GY +      A  LF  M      P+           
Sbjct: 149 ARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVM------PE----------- 191

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
                                 R+V    A++  +AK  D++ A + F  M  R++VSW 
Sbjct: 192 ----------------------RNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---LVDKGREYFDSM 239
           ++++G A +G   EA+ LF+EM+ AG+ PD+  +V ++SACS  G   L           
Sbjct: 230 AMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +       +      ++DM  + G +  A +    MP   N + W ++I+     G+  +
Sbjct: 290 RIQLNCFVRT----ALLDMYAKFGDLDSARKLFNTMP-GRNVVTWNSMIAGYAQNGQSAM 344

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYA 326
           A  + K +I  + +      ++S I A
Sbjct: 345 AIELFKEMITAKKLTPDEVTMVSVISA 371


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/433 (44%), Positives = 275/433 (63%), Gaps = 1/433 (0%)

Query: 44  DIHVQNTLVHMYGSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
           D+ V +    + G C  G ++  RK+FD M ER+ +SW+AMI GY + G   DA+++F Q
Sbjct: 158 DLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQ 217

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M+  G+  +     + + ACT  G L  G+ V  ++E+  +     L  A++DM+ KCG 
Sbjct: 218 MRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGS 277

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           V++A  +F+ +  + + SW  +I GLA+HGR  +A+ LF EM    V PDDV  V +L+A
Sbjct: 278 VEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTA 337

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           C+H G+V  G  YF+ +   +GI PK+EHYGCMVD+  R+G + EA + I  MP+E +  
Sbjct: 338 CAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIG 397

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           +   L  AC    +L L E+I  R+I  +P +   YVLL+++ A   +W    K+R +MD
Sbjct: 398 VLGALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMD 457

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
           +R + K  G ++IE+D E+ EF CG   H Q KEI+  + +M RK++  GY+P TS+VL 
Sbjct: 458 ERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLH 517

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI EE+KE  L  HSEKLAIAF LL+T PG  +RI KNLRVC DCH ATKFIS+++ REI
Sbjct: 518 DITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREI 577

Query: 463 VVRDRHRFHHFKD 475
           VVRDR+RFHHFKD
Sbjct: 578 VVRDRNRFHHFKD 590


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/483 (41%), Positives = 298/483 (61%), Gaps = 10/483 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKS-----VHGAVLKFQFGDDIHVQNTLVHMY 55
           M   GV  + ++Y   LKAC      +L  S     +H   ++  +G   HV  TL+  Y
Sbjct: 341 MGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCY 400

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEI 113
               G +    +VF  M +R+ VSWSAMIG YA+     DAI +F++M  S   + P+ I
Sbjct: 401 AKL-GIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSI 459

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T+V+VL AC  + AL  GK + ++I ++  +  V + NAL+ M+ KCG ++    +F  +
Sbjct: 460 TIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWI 519

Query: 174 -NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
              R +VSW S+I+G  MHG G E++ +FEEM+E G+ P+ + FV +L ACSH GLV++G
Sbjct: 520 GRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQG 579

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           ++ F+SM  ++ + P+ EHY CMVD+L R+GR+ EA E IQ M I+ +P +W +L+ AC 
Sbjct: 580 KKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACR 638

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
             G ++ AE     L   EP +  NYVLL+ IYA+     +   ++E++++  ++K+PG 
Sbjct: 639 IHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGC 698

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE+  ++Y FV  D  + Q +E+  ++ E   +MK  GYVP T  VL DI EE+KE  
Sbjct: 699 SWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERI 758

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLA+AF L+KT  G  IRI KNLR+C DCHS TKFISK  +REIVVRD +RFHH
Sbjct: 759 LLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHH 818

Query: 473 FKD 475
           F++
Sbjct: 819 FRN 821



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 14/293 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAV-LKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P + TY  +L A A   D  L  +VH  +     F  D  +   L+  Y +    +   
Sbjct: 245 APTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAAL-SALPAA 303

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R+VFDE   ++   W+AM+   A      +A+     M   GV  D  +    L AC   
Sbjct: 304 RQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAA 363

Query: 126 GA--LEVGKWVESFIEKQMVNRSVGL----CNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A  L     V   +    + R  GL       LID +AK G V  A ++F SM  R +V
Sbjct: 364 SASHLPASARVRE-MHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLV 422

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEML--EAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           SW+++I   A + R  +A+ +F+EM+  +A + P+ +  V +L AC+    + +G+    
Sbjct: 423 SWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHA 482

Query: 238 S-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             ++  F ++  +     ++ M  + G ++        +    N + W +LIS
Sbjct: 483 YILRRGFDLLVSV--LNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLIS 533



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 11/194 (5%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALK 168
           P + T  ++L A        +   V   +E   V RS   L   LI+ +A    +  A +
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC----- 223
           +F     + I  W +++  LA+   G EA+    +M   GVP D  ++   L AC     
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365

Query: 224 SHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           SH     + RE +  +++  +G+   +     ++D   + G V  A      MP + N +
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVA--TTLIDCYAKLGIVSYAERVFTSMP-DRNLV 422

Query: 283 IWRTLISACCARGE 296
            W  +I  C A+ E
Sbjct: 423 SWSAMI-GCYAKNE 435


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/413 (45%), Positives = 268/413 (64%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I L + VFDEM     +SW+AM+  Y    +  +A++LF +MQ  G+ PD +T+ TVL +
Sbjct: 77  IALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 136

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C ++ AL +GK +   I+++ +  S+ L NAL+DM+A CG + +A  +F SM  R +VSW
Sbjct: 137 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 196

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+I+    HG G EA+ LFE+M   G+ PD +AFV +L+ACSH GL+D G+ YF SM +
Sbjct: 197 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTS 256

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           +F I PK+EHY CMVD+L R+G ++EA++FI  MPI+ N  +W  L+ AC     + +  
Sbjct: 257 EFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 316

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
                L+   P     YVLLS+IYA+  RW   + +R VM+ +G+KK+PG +  EL + +
Sbjct: 317 LAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSV 376

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD SH QSK IY+ L E+ R++++ GY P     L D+ EEDKE  L+ HSEKLA
Sbjct: 377 HTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLA 436

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           IAF L+ T PGTPIRI  NLR C+DCH A K IS I  REI+++D +R H+ K
Sbjct: 437 IAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 9/196 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P+  T   VL +C  +  L+LGK +H  + + +    + ++N L+ MY +C G
Sbjct: 118 MQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC-G 176

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD M  RD VSW+++I  Y R G   +AIDLF +M   G+ PD I  V +L+
Sbjct: 177 CLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILA 236

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NG 175
           AC+  G L++GK +  S   +  +   +     ++D+  + G + +A      M    N 
Sbjct: 237 ACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNE 296

Query: 176 RTIVSWTSVIAGLAMH 191
           R    W +++    +H
Sbjct: 297 RV---WGALLGACRIH 309



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 41/263 (15%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PD 111
           MY  C G  +   ++F+EM  RD VSW+AMI G+A  GL   A+D+FR++ ++  C  PD
Sbjct: 1   MYARC-GRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFREL-VALQCPKPD 58

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
             TM ++L +        +GK                         A+  D+     +F 
Sbjct: 59  AGTMASILPS--------MGK-------------------------ARVEDIALLKGVFD 85

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
            M    ++SW +++A    +   +EAV LF  M + G+ PD V    +L +C     +  
Sbjct: 86  EMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 145

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+   + +K    +   +     ++DM    G +KEA +    M    + + W ++ISA 
Sbjct: 146 GKRIHEVIKRR-RMCSSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVSWTSIISAY 203

Query: 292 CARGELKLAESITKRLIGN--EP 312
              G  + A  + +++ G   EP
Sbjct: 204 GRHGHGREAIDLFEKMCGQGLEP 226


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 294/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +LKA    G  ++G+ +H   +K+ + +D++V + L+ MY  CE 
Sbjct: 152 MLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQ 211

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD +  ++ VSW+A+I G+AR       +  F +MQ +G      T  ++ S
Sbjct: 212 -MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 270

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +GALE G+WV + + K     +  + N ++ M+AK G +  A K+F  M+ R +V+
Sbjct: 271 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 330

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++  LA +G G EAVA FEE+ + G+  + + F+ +L+ACSH GLV +G+ YFD MK
Sbjct: 331 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK 390

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ + P+I+HY   VD+L R+G +KEA  F+ KMP+E    +W  L+ AC      K+ 
Sbjct: 391 -DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMG 449

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W    ++R++M   G+KK P  + ++++N 
Sbjct: 450 QYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENS 509

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +S +IY M +E+  ++KKAGYVP T+ VLL INE+++E  L  HSEK+
Sbjct: 510 VHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKI 569

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+  P G  IRI+KN+R+C DCHSA K++SK++ REIVVRD +RFHHF +
Sbjct: 570 ALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSE 624



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 144/291 (49%), Gaps = 5/291 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y  ++ ACA   +L   +++H  + +     D  + N+L+HMY  C G +   
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKC-GAVSDA 114

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VFD+M  RD VSW+ +I GYA+  +  +AI L   M  +   P+  T  ++L A    
Sbjct: 115 RHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGAC 174

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   +G+ + +   K   +  V + +AL+DM+A+C  +D A+ +F  +  +  VSW ++I
Sbjct: 175 GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALI 234

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           AG A    G   +  F EM   G       +  + SA +  G +++GR  +   +K+   
Sbjct: 235 AGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK 294

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +   + +   M+ M  +SG + +A +   +M  + + + W T+++A    G
Sbjct: 295 LTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQYG 342


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/432 (43%), Positives = 269/432 (62%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   NT++  YG   G I   RK FD M +RD VSW+A+I GYA+ G   +A+++F ++
Sbjct: 327 NISSWNTMITGYGQI-GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  T    LS C D+ ALE+GK +     K        + NAL+ M+ KCG +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D+A   F  +  + +VSW +++AG A HG G +A+ +FE M  AGV PD++  VG+LSAC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GL+D+G EYF SM  D+G+IP  +HY CM+D+L R+GR++EA + I+ MP +     
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAAS 565

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A    G  +L E   + +   EP +   YVLLS++YA   RW    K+R  M  
Sbjct: 566 WGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRD 625

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G++K+PG + +E+ N+I+ F  GD SH + + IY  L+E+  KM++ GYV  T  VL D
Sbjct: 626 IGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHD 685

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+AF +L  P G PIR++KNLRVC DCHSA K ISKI  R I+
Sbjct: 686 VEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLII 745

Query: 464 VRDRHRFHHFKD 475
           +RD HRFHHF +
Sbjct: 746 LRDSHRFHHFNE 757



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S N+ T+   L  CA I  L LGK +HG  +K  +G    V N L+ MY  C G I+ 
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC-GSIDE 447

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F+ + E+D VSW+ M+ GYAR G    A+ +F  M+ +GV PDEITMV VLSAC+ 
Sbjct: 448 ANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSH 507

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G L+ G ++  S  +   V  +      +ID+  + G +++A  L R+M  +    SW 
Sbjct: 508 TGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWG 567

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 568 ALLGASRIHG 577



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 23/253 (9%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  Y    GG+   R++FDE   RD  +W+AM+ GY + G+  +A   F +M     
Sbjct: 239 NTMISGYAQG-GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +E++   +++       +++ +  E F  + M  R++   N +I  + + GD+ +A K
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIAR--ELF--ESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
            F  M  R  VSW ++IAG A  G   EA+ +F E+ + G   +   F   LS C+    
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 229 VDKGRE-YFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAHEFIQKMPIEANPI 282
           ++ G++ +  ++K  +G        GC V      M  + G + EA++  + +  E + +
Sbjct: 410 LELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVV 461

Query: 283 IWRTLISACCARG 295
            W T+++     G
Sbjct: 462 SWNTMLAGYARHG 474



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 63/280 (22%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           +LK+      H++N      G C+  +     VF+ M  R SVS++AMI GY R      
Sbjct: 49  ILKWNKAISTHMRN------GHCDSALH----VFNTMPRRSSVSYNAMISGYLRNSKFNL 98

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A +LF QM    +    + +   +  C  LG  +  +  +   EK +V+      N+L+ 
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCR-LG--DARRLFDLMPEKDVVS-----WNSLLS 150

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
            +A+ G VD+A ++F +M  +  +SW  ++A    +GR  EA  LFE             
Sbjct: 151 GYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES------------ 198

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
                                   K+D+ +I     + C++    R  ++ +A     KM
Sbjct: 199 ------------------------KSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKM 230

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           P+  + I W T+IS     G L  A    +RL    P  +
Sbjct: 231 PVR-DAISWNTMISGYAQGGGLSQA----RRLFDESPTRD 265


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/504 (39%), Positives = 296/504 (58%), Gaps = 34/504 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ F +  +++AC+ +G L LGK VH   +   F DD  V+++L+ MY  C G  + 
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKC-GQPDE 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP---- 110
            R VFD +  ++SVSW++MI GYAR G   +A+DLF Q            ISG+      
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 111 ------------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D + + +V+  C +L  LE+GK +   +        + + NA
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNA 278

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKC D+  A  +F  M  + ++SWTS+I G A HG+  EA+ L++EM+ + + P+
Sbjct: 279 LVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPN 338

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGLL ACSH GLV +GRE F SM  D+ I P ++HY C++D+L RSG + EA   +
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLL 398

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
            K+P + +   W +L+SAC     L++   I  R++  +P   S Y+LLS++YA    W 
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWG 458

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK-EIYEMLDEMGRKMKKA 391
             +K+R++M    ++K PG + I+   +   F  G+   H  K EI  +L ++  +M+K 
Sbjct: 459 SVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKR 518

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP TS VL DI +++KE  L  HSE+LA+A+ LLK  PGT IRIVKNLR+C DCH+  
Sbjct: 519 GYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVL 578

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           KFIS I  REI+VRD  R+HHFK+
Sbjct: 579 KFISDIVKREIMVRDATRYHHFKE 602



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 55/340 (16%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ CA     +    +H  ++K  F     + NTL+ +YG C G I    ++FDEM  RD
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKC-GLIPQALQLFDEMPNRD 68

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            VSW++++  + +  +    + +   M    G+ PD      ++ AC+ LG L +GK V 
Sbjct: 69  HVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVH 128

Query: 136 S-FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
           + F+     +  V + ++LIDM+ KCG  D+A  +F S+  +  VSWTS+I+G A  GR 
Sbjct: 129 ARFMLSXFCDDEV-VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRK 187

Query: 195 LEAV-------------------------------ALFEEMLEAGVP-PDDVAFVGLLSA 222
            EA+                               +LF EM   G+   D +    ++  
Sbjct: 188 CEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGG 247

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEFIQKMP 276
           C++  L++ G++         G++  +    C      +VDM  +   +  A +   +MP
Sbjct: 248 CANLALLELGKQI-------HGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 277 IEANPIIWRTLISACCARGELKLA-----ESITKRLIGNE 311
              + I W ++I      G+ + A     E +  R+  NE
Sbjct: 301 -RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNE 339


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/477 (40%), Positives = 292/477 (61%), Gaps = 7/477 (1%)

Query: 5   GVSPNKFTYPFVLKACA----GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           G+  N+FTY +VLKAC      I  L  GK +H  +L+  +   +HV  TL+ +Y    G
Sbjct: 170 GIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARF-G 228

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTV 118
            +     VF  M +++ VSWSAMI  YA+  +   A++LF+ M +      P+ ITMV+V
Sbjct: 229 YVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSV 288

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC  L ALE GK V +++ ++ ++ ++ + N LI M+ +CG++    ++F  M  R +
Sbjct: 289 LQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDV 348

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +SW S+I+   MHG G +A+ +FE M+  GV P  + F+ +L ACSH GLV++ +  F+S
Sbjct: 349 ISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFES 408

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M N + I P++EHY CMVD+L R+ R+ EA E IQ M  +  P +W +L+ +C     ++
Sbjct: 409 MLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVE 468

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE  +  L   EP +  NYVLLSHIYAK   W    ++R+ ++ RG++KIP  + IE+ 
Sbjct: 469 LAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVK 528

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            +IY  V  ++ + Q +E+   L  +  ++K  GYVP T+ V  D++EE+KE  +  HS 
Sbjct: 529 RKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSG 588

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+AF L+ T  G  IRI  NLR+C DCH+  KF+SK  NREI++RD +RFH FKD
Sbjct: 589 KLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKD 645



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 11/310 (3%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGIELG 65
           +P K T+  ++ +C     L+ G  VH  ++      D ++   L++MY  C+ G ++  
Sbjct: 71  NPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMY--CDLGSVDHA 128

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT-- 123
            KVFDE  E+    W+A+    A      D + L+ QM   G+  +  T   VL AC   
Sbjct: 129 CKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVS 188

Query: 124 --DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
              +  L  GK + + I +      V +   L+D++A+ G V  A  +F +M  + IVSW
Sbjct: 189 ELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSW 248

Query: 182 TSVIAGLAMHGRGLEAVALFE-EMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +++IA  A +   ++A+ LF+  MLEA    P+ +  V +L AC+    ++ G+     +
Sbjct: 249 SAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYV 308

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     ++ M  R G +         M  + + I W +LIS     G  K 
Sbjct: 309 LRR-GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLISIYGMHGLGKK 366

Query: 300 AESITKRLIG 309
           A  I + +I 
Sbjct: 367 AIQIFENMIN 376


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/476 (39%), Positives = 293/476 (61%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV P+ +T+PFVLKACA +  L  G+ +   + K     D HVQN+L+  YG C G
Sbjct: 138 MLEAGVGPDSYTFPFVLKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKC-G 196

Query: 61  GIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
              + R  FD  E  ER + SWSA++  Y + GL  + ++ F  M + G  PDE +MV+ 
Sbjct: 197 EPAMARLAFDRVEDEERTTASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSA 256

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +SAC  LGA +VG+ +   + +     +  +  +L+DM+AKCG ++KA  +F +M+ +  
Sbjct: 257 ISACAHLGAFDVGRSIHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNA 316

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            +++++++GLA+HG G +A+ +F+ M+  G  PD  A+VG+L+ACS  GL++ G   FD 
Sbjct: 317 WAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDR 376

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ +    P  +HYGCMVD++ R+GR+ +A   I  MP       WR+L++AC   G+L 
Sbjct: 377 MRLEHKFAPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGDLD 436

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAES  + L      +  +YV+++ ++A+   W      R      G+ + PG + +E+ 
Sbjct: 437 LAESALEELRSLGAANAGDYVIVADMHARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVR 496

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            E++ FV  D SH ++++IYEML +M  +++  GY P TSEV LD+ EE+K   +  HS+
Sbjct: 497 GELHRFVSQDMSHPRTRDIYEMLHQMEWQLRFDGYRPDTSEVALDVGEEEKRHVVAAHSQ 556

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           KLA+AF LL TP G P+R+V NLR+  +CH+ +  IS+I+ REIV+RDR+R H F+
Sbjct: 557 KLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVIRDRNRLHRFR 612



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 10/261 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS----TDAIDLFRQMQISGVCPDEITM 115
           GG+EL   +F+ + E ++  ++ ++ G+   G        A+ L+  M  +GV PD  T 
Sbjct: 91  GGMELAASIFESLVEPEAFDYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTF 150

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
             VL AC  L +L+ G+ +++ IEK  +     + N+LI  + KCG+   A   F  +  
Sbjct: 151 PFVLKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVED 210

Query: 176 --RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             RT  SW++++A     G   E +  F  M+  G  PD+ + V  +SAC+H G  D GR
Sbjct: 211 EERTTASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGR 270

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               ++  +   +  I     +VDM  + G +++A      M  + N   +  ++S    
Sbjct: 271 SIHCALLRNTARLNTIMQTS-LVDMYAKCGSIEKAAAVFDAMD-DKNAWAYSAMLSGLAL 328

Query: 294 RGELKLAESITKRLI--GNEP 312
            G+ + A  +   ++  G+ P
Sbjct: 329 HGDGRKALQVFDAMVREGHAP 349


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/432 (43%), Positives = 269/432 (62%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   NT++  YG   G I   RK FD M +RD VSW+A+I GYA+ G   +A+++F ++
Sbjct: 327 NISSWNTMITGYGQI-GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  T    LS C D+ ALE+GK +     K        + NAL+ M+ KCG +
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D+A   F  +  + +VSW +++AG A HG G +A+ +FE M  AGV PD++  VG+LSAC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GL+D+G EYF SM  D+G+IP  +HY CM+D+L R+GR++EA + I+ MP +     
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAAS 565

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A    G  +L E   + +   EP +   YVLLS++YA   RW    K+R  M  
Sbjct: 566 WGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRD 625

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G++K+PG + +E+ N+I+ F  GD SH + + IY  L+E+  KM++ GYV  T  VL D
Sbjct: 626 IGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHD 685

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+AF +L  P G PIR++KNLRVC DCHSA K ISKI  R I+
Sbjct: 686 VEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLII 745

Query: 464 VRDRHRFHHFKD 475
           +RD HRFHHF +
Sbjct: 746 LRDSHRFHHFNE 757



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S N+ T+   L  CA I  L LGK +HG  +K  +G    V N L+ MY  C G I+ 
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC-GSIDE 447

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F+ + E+D VSW+ M+ GYAR G    A+ +F  M+ +GV PDEITMV VLSAC+ 
Sbjct: 448 ANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSH 507

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G L+ G ++  S  +   V  +      +ID+  + G +++A  L R+M  +    SW 
Sbjct: 508 TGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWG 567

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 568 ALLGASRIHG 577



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 108/248 (43%), Gaps = 54/248 (21%)

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           + GL+D G EYF  M  ++ + P  +HY CM+D+L R  R++E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             L+ A    G  +L E   +      P +                    +K+R+V    
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G++K+PG +  E+ N+I+ F  G     + + I   L+E+  KM++       +      
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMREREEEKERT------ 910

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKN-LRVCNDCHSATKFISKIYNREIV 463
                   L   SE LA A  +L  P G P R++K  + VC DC SA K +SKI  R I 
Sbjct: 911 --------LKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 464 VRDRHRFH 471
           +RD HRF+
Sbjct: 963 LRDSHRFN 970



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 23/253 (9%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  Y    GG+   R++FDE   RD  +W+AM+ GY + G+  +A   F +M     
Sbjct: 239 NTMISGYAQG-GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +E++   +++       +++ +  E F  + M  R++   N +I  + + GD+ +A K
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIAR--ELF--ESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
            F  M  R  VSW ++IAG A  G   EA+ +F E+ + G   +   F   LS C+    
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAA 409

Query: 229 VDKGRE-YFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAHEFIQKMPIEANPI 282
           ++ G++ +  ++K  +G        GC V      M  + G + EA++  + +  E + +
Sbjct: 410 LELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVV 461

Query: 283 IWRTLISACCARG 295
            W T+++     G
Sbjct: 462 SWNTMLAGYARHG 474



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 63/280 (22%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           +LK+      H++N      G C+  +     VF+ M  R SVS++AMI GY R      
Sbjct: 49  ILKWNKAISTHMRN------GHCDSALH----VFNTMPRRSSVSYNAMISGYLRNSKFNL 98

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A +LF QM    +    + +   +  C  LG  +  +  +   EK +V+      N+L+ 
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCR-LG--DARRLFDLMPEKDVVS-----WNSLLS 150

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
            +A+ G VD+A ++F +M  +  +SW  ++A    +GR  EA  LFE             
Sbjct: 151 GYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES------------ 198

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
                                   K+D+ +I     + C++    R  ++ +A     KM
Sbjct: 199 ------------------------KSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKM 230

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           P+  + I W T+IS     G L  A    +RL    P  +
Sbjct: 231 PVR-DAISWNTMISGYAQGGGLSQA----RRLFDESPTRD 265


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/421 (44%), Positives = 268/421 (63%), Gaps = 1/421 (0%)

Query: 56  GSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C+ G +   R +FD M +RDSVSW+A+I GYA+ GL  +A+++  +M+  G   +  T
Sbjct: 321 GYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRST 380

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
               LSAC D+ ALE+GK V   + +    +   + NAL+ M+ KCG +D+A  +F+ + 
Sbjct: 381 FCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ 440

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + IVSW +++AG A HG G +A+ +FE M+ AGV PD++  VG+LSACSH GL D+G E
Sbjct: 441 HKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTE 500

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YF SM  D+GI P  +HY CM+D+L R+G ++EA   I+ MP E +   W  L+ A    
Sbjct: 501 YFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIH 560

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G ++L E   + +   EP +   YVLLS++YA   RW   +K+R  M + G++K PG + 
Sbjct: 561 GNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSW 620

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +E+ N+I+ F  GD  H +   IY  L+E+  KMK  GYV +T  VL D+ EE+K+  L 
Sbjct: 621 VEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLK 680

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSEKLA+AF +L  P G PIR++KNLRVC DCH+A K ISKI  R I+VRD HR+HHF 
Sbjct: 681 YHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFS 740

Query: 475 D 475
           +
Sbjct: 741 E 741



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S N+ T+   L ACA I  L LGK VHG V++  +     V N LV MY  C G I+ 
Sbjct: 373 GESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC-GCIDE 431

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF  +  +D VSW+ M+ GYAR G    A+ +F  M  +GV PDEITMV VLSAC+ 
Sbjct: 432 AYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSH 491

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G  + G ++  S  +   +  +      +ID+  + G +++A  L R+M       +W 
Sbjct: 492 TGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWG 551

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 552 ALLGASRIHG 561



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 22/241 (9%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD M E+D VSW+AM+ GY R G   +A D+F +M       + I+   +L+A   
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVR 169

Query: 125 LGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            G LE  + + ES  + ++++     CN L+  + K   +  A +LF  +  R ++SW +
Sbjct: 170 SGRLEEARRLFESKSDWELIS-----CNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNT 224

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I+G A  G   +A  LFEE      P  DV  +  ++ A    G++D+ R  FD M   
Sbjct: 225 MISGYAQDGDLSQARRLFEE-----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK 279

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
                +   Y  M+    +  R+    E  ++MP   N   W  +IS  C  G+L  A +
Sbjct: 280 -----REMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARN 333

Query: 303 I 303
           +
Sbjct: 334 L 334



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 21/270 (7%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT++  Y   +G +   R++F+E   RD  +W+AM+  Y + G+  +A  +F +M
Sbjct: 218 DLISWNTMISGYAQ-DGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
                   E++   +++       +++G+  E F E    N  +G  N +I  + + GD+
Sbjct: 277 PQK----REMSYNVMIAGYAQYKRMDMGR--ELFEEMPFPN--IGSWNIMISGYCQNGDL 328

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            +A  LF  M  R  VSW ++IAG A +G   EA+ +  EM   G   +   F   LSAC
Sbjct: 329 AQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSAC 388

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-----MVDMLCRSGRVKEAHEFIQKMPIE 278
           +    ++ G++          ++      GC     +V M C+ G + EA++  Q +   
Sbjct: 389 ADIAALELGKQVHGQ------VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ-H 441

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLI 308
            + + W T+++     G  + A ++ + +I
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMI 471



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 54/267 (20%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G  +L   VFD M  R+SVS++AMI GY R    + A DLF +M      P +       
Sbjct: 47  GHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKM------PHK------- 93

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                    ++  W                 N ++  +A+   +  A  LF SM  + +V
Sbjct: 94  ---------DLFSW-----------------NLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++++G    G   EA  +F+ M       + +++ GLL+A    G +++ R  F+S 
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFES- 182

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K+D+ +I       C++    +   + +A +   ++P+  + I W T+IS     G+L  
Sbjct: 183 KSDWELIS----CNCLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISGYAQDGDLSQ 237

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYA 326
           A    +RL    P+ +  +   + +YA
Sbjct: 238 A----RRLFEESPVRDV-FTWTAMVYA 259



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           C   I    + G  D AL +F +M  R  VS+ ++I+G   + +   A  LF++M     
Sbjct: 36  CTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKM----- 90

Query: 210 PPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           P  D+ ++  +L+  +    +   R  FDSM         +  +  M+    RSG V EA
Sbjct: 91  PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK-----DVVSWNAMLSGYVRSGHVDEA 145

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            +   +MP   N I W  L++A    G L+ A  +
Sbjct: 146 RDVFDRMP-HKNSISWNGLLAAYVRSGRLEEARRL 179


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 285/435 (65%), Gaps = 10/435 (2%)

Query: 50  TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL--------GLSTDAI-DLF 100
            L+ ++  C G I   RKVFD ++  D  +W+A++  YARL          + DAI ++F
Sbjct: 396 ALLDVFARC-GRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMF 454

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            +M    + P+EIT+V V+ AC +LGA+  G W  ++  K+ +  +  +  AL++M+A C
Sbjct: 455 VRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC 514

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G +D A ++F + + R    + +++ GLA+HG G  A++LF+ M   GVP D V  + ++
Sbjct: 515 GRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVM 574

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            AC+H GLVD+G +YFD M+ +FGI P IEHYGCMVDML R+GR+ +A + I  MPI  N
Sbjct: 575 CACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPN 634

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
             I+R+LI AC   G+L+L + +   L+  EP    N+VL+S+ YA   RW+   K R+ 
Sbjct: 635 AAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKE 694

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M   G+ K PGS+ ++++  ++EF+ GDK+H  SKEIY M++++  ++ + G+  +TS  
Sbjct: 695 MKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSA 754

Query: 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNR 460
           L D+ EEDK DAL+ HSE+LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y R
Sbjct: 755 LFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGR 814

Query: 461 EIVVRDRHRFHHFKD 475
           EIV+RDR RFHHF+D
Sbjct: 815 EIVMRDRTRFHHFRD 829



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 11/218 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC  +G ++ G   H   +K +   +  V   LV MY  C G
Sbjct: 457 MLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC-G 515

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF   S+RD+  ++AM+ G A  G    A+ LF +M   GV  D +T+++V+ 
Sbjct: 516 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMC 575

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +  S+     ++DM ++ G ++ A KL   ++G  IV
Sbjct: 576 ACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKL---IHGMPIV 632

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 633 PNAAIYRSLIRACGIHGKLELGKKMIAELMR--LEPDD 668


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/477 (40%), Positives = 297/477 (62%), Gaps = 10/477 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+K TY  +L AC+   D+ LG+ +H  ++  +   ++ V N LV MY  C    E  R 
Sbjct: 258 PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTE-ARA 316

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-------QISGVCPDEITMVTVLS 120
           VFD+M +R  +SW+ +I  Y R  L  +A  LF+QM           V PD +  VT+L+
Sbjct: 317 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 376

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC D+ ALE GK V        ++    +  A+++++ KCG++++A ++F ++  R  V 
Sbjct: 377 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQ 436

Query: 181 -WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W ++IA  A  G+  EA+ LF  M   GV PD  +FV +L ACSH GL D+G+ YF SM
Sbjct: 437 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 496

Query: 240 KNDF-GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
             ++  +   I+H+GC+ D+L R GR+KEA EF++K+P++ + + W +L++AC    +LK
Sbjct: 497 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 556

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
            A+ +  +L+  EP   + YV LS+IYA+L +W    K+R+ M ++G+KK  G + IE+ 
Sbjct: 557 RAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIG 616

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             +++F  GD +H +++EI E L ++  +MK+ GYVP T  VL  ++E++KE  L  HSE
Sbjct: 617 KYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSE 676

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIA  L+ TP GTP+R+ KNLRVC+DCH+ATK ISKI  R+IVVRD  RFH FKD
Sbjct: 677 RLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKD 733



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 154/305 (50%), Gaps = 14/305 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+   K     +L AC+    +  G+ +H  +    F  ++ V N ++ MYG C G
Sbjct: 151 MLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRC-G 209

Query: 61  GIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E  RKVFD M E  RD VSW+ M+  Y       DAI L+++MQ+    PD++T V++
Sbjct: 210 AVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLR---PDKVTYVSL 266

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSAC+    + +G+ +   I    + ++V + NAL+ M+AKCG   +A  +F  M  R+I
Sbjct: 267 LSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 326

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-------AGVPPDDVAFVGLLSACSHCGLVDK 231
           +SWT++I+         EA  LF++MLE         V PD +AFV +L+AC+    +++
Sbjct: 327 ISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQ 386

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+          G+         +V++  + G ++EA      +    +  +W  +I+  
Sbjct: 387 GK-MVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVY 445

Query: 292 CARGE 296
              G+
Sbjct: 446 AQFGQ 450



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 42/338 (12%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
           MY  C+   +  +  FD + +R+  SW+ ++  +A  G S + +    +M+  GV PD +
Sbjct: 1   MYAHCDSPGD-AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAV 59

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T +T L +C D  +L  G  +   +    +     + NAL++M+ KCG +  A ++F  M
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 174 -NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-------- 224
              R ++SW+ +    A+HG   EA+  F  ML  G+     A V +LSACS        
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 225 ---------------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257
                                       CG V++ R+ FD+M      +  +  +  M+ 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDE---ALRDVVSWNIMLS 236

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317
               + R K+A +  Q+M +  + + + +L+SAC +  ++ L   + K+++ +E   E N
Sbjct: 237 TYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL--EKN 294

Query: 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
            ++ + + +   +    T+ R V DK   + I   T I
Sbjct: 295 VIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTI 332


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 298/477 (62%), Gaps = 11/477 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GVS +  T   ++  C     L LG+S+HG  +K     ++ V N+ + MY  C G
Sbjct: 144 MKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKC-G 202

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E GR++FDEM  +  ++W+A+I GY++ GL+ D ++LF QM+ SGVCPD  T+V+VLS
Sbjct: 203 SVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLS 262

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGA ++G+ V   +E      +V L NALI M+A+CG++ KA  +F  M  +++VS
Sbjct: 263 SCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVS 322

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I    MHG G   + LF++M++ G+ PD   FV +LSACSH GL DKG E F +MK
Sbjct: 323 WTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 382

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P  EHY C+VD+L R+GR+ EA EFI  MP+E +  +W  L+ AC     + +A
Sbjct: 383 REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMA 442

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    ++I  EPM+   YVL+S+IY+     E   +IR +M +R  +K PG + +E   +
Sbjct: 443 ELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGK 502

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRK-MKKAGYVPTTSEVLLDINE-EDKEDALNKHSE 418
           ++ F+ GD+SH Q++E++ MLDE+    M+ AG         +D +  E+      +HSE
Sbjct: 503 VHLFLAGDRSHEQTEEVHRMLDELETSVMELAGN--------MDCDRGEEVSSTTREHSE 554

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIAF +L + PGT I ++KNLRVC DCH   K +SKI +R  VVRD  RFH+FKD
Sbjct: 555 RLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKD 611



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 5/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G SP+ F++PF+LK+CA +     G+ +H  V++     +  V   L+ MY  C G
Sbjct: 41  MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKC-G 99

Query: 61  GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E  RKVF+E   S +  V ++A+I GY      +DA  +FR+M+ +GV  D +T++ +
Sbjct: 100 LVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGL 159

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  CT    L +G+ +     K      V + N+ I M+ KCG V+   +LF  M  + +
Sbjct: 160 VPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGL 219

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           ++W +VI+G + +G   + + LFE+M  +GV PD    V +LS+C+H G    G+E  + 
Sbjct: 220 ITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGEL 279

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           ++ + G  P +     ++ M  R G + +A      MP+++  + W  +I
Sbjct: 280 VEAN-GFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKS-LVSWTAMI 327



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 6/230 (2%)

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F   S   S SW+  +   A   L T++I L+R M  SG  PD  +   +L +C  L   
Sbjct: 7   FVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLP 66

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF--RSMNGRTIVSWTSVIA 186
             G+ +   + +        +  ALI M+ KCG V+ A K+F     + +  V + ++I+
Sbjct: 67  VSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALIS 126

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGI 245
           G   + +  +A  +F  M E GV  D V  +GL+  C+    +  GR  + + +K   G 
Sbjct: 127 GYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG--GT 184

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++      + M  + G V+       +MP++   I W  +IS     G
Sbjct: 185 YSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKG-LITWNAVISGYSQNG 233


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 290/509 (56%), Gaps = 34/509 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ----FGDDIHVQNTLVHMYG 56
           M   G+  ++FTY  VL ACA  G    GK VH  +L+ +        + V N L  +Y 
Sbjct: 282 MYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYW 341

Query: 57  SC------------------------------EGGIELGRKVFDEMSERDSVSWSAMIGG 86
            C                               G I+  +  F+EM ER+ ++W+ MI G
Sbjct: 342 KCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISG 401

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
            A+ G   +++ LF +M+  G  P +      + AC  L AL  G+ + + + +   + S
Sbjct: 402 LAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSS 461

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           +   NALI M+AKCG V+ A  LF +M     VSW ++IA L  HG G +A+ LFE ML+
Sbjct: 462 LSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLK 521

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + PD + F+ +LS CSH GLV++G  YF SM   +GI P  +HY  M+D+LCR+G+  
Sbjct: 522 EDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFS 581

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           EA + I+ MP+E  P IW  L++ C   G + L     +RL    P H+  YVLLS++YA
Sbjct: 582 EAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYA 641

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
            + RW+   K+R++M  +G+KK PG + IE++N+++ F+  D  H + + +Y  L+E+G 
Sbjct: 642 TVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGL 701

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           KM+K GY+P T  VL D+  E KE  L+ HSEKLA+ F LLK P G  +R+ KNLR+C D
Sbjct: 702 KMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGD 761

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHFKD 475
           CH+A KF+SK+  REIVVRD  RFHHFK+
Sbjct: 762 CHNAFKFMSKVVEREIVVRDGKRFHHFKN 790



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 77/370 (20%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           +L  G  P+ FT+  VL A A I  D    + +H AV+K   G    V N L+ ++  C 
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 60  GG--------IELGRKVFDEMSERDSVSWS------------------------------ 81
                     +   RK+FDEM+ERD +SW+                              
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 82  -AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI-- 138
            AMI GY   G   +A+++FR+M + G+  DE T  +VLSAC + G    GK V ++I  
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 139 --EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS------------------------ 172
              +  ++ S+ + NAL  ++ KCG VD+A ++F                          
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379

Query: 173 -------MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
                  M  R +++WT +I+GLA +G G E++ LF  M   G  P D AF G + AC+ 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
              +  GR+    +    G    +     ++ M  + G V+ AH     MP   + + W 
Sbjct: 440 LAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVSWN 497

Query: 286 TLISACCARG 295
            +I+A    G
Sbjct: 498 AMIAALGQHG 507



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 131/334 (39%), Gaps = 89/334 (26%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVF--DEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           DI  + TL+  + S  G   L R++F    +  RD+V ++AMI GY+       AI+LFR
Sbjct: 80  DIVARTTLIAAHSSA-GNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFR 138

Query: 102 QMQISGVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            +  +G  PD  T  +VL A   +   E   + +   + K        + NAL+ +F KC
Sbjct: 139 DLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKC 198

Query: 161 ----------------------------------------GDVDKALKLFRSMNGRTIVS 180
                                                   G++D A +    M  + +V+
Sbjct: 199 ASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVA 258

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--------------- 225
           W ++I+G   HG  LEA+ +F +M   G+  D+  +  +LSAC++               
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 226 ------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
                                   CG VD+ R+ F+ M      +  +  +  ++     
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP-----VKDLVSWNAILSGYVN 373

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +GR+ EA  F ++MP E N + W  +IS     G
Sbjct: 374 AGRIDEAKSFFEEMP-ERNLLTWTVMISGLAQNG 406


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 287/471 (60%), Gaps = 4/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            GV P+KFT    L  C     L LGK +H  V +     DI V+N L++MY +C G    
Sbjct: 633  GVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNC-GDWRE 691

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
                F+ M  RD VSW+ M   YA+ GL+ +A+ LFRQMQ+ GV PD++T  T L+    
Sbjct: 692  ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGG 751

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
               +  GK   +   +  ++  V +   L+ ++AKCG +D+A+ LFR     T+V   ++
Sbjct: 752  SALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAI 811

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I  LA HG   EAV +F +M + GV PD    V ++SAC H G+V++G   F +MK  FG
Sbjct: 812  IGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFG 871

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P +EHY C VD+L R+G+++ A + I+KMP E N ++W +L+  C  +G+ +L E   
Sbjct: 872  ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCA 931

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +R++  +P + + +V+LS+IY    +W+     R+ M    +K  PG +  E+  +++EF
Sbjct: 932  QRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEF 991

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
            V GD+SH ++ EIY +LD++   M++AGY    ++  LD+ +E KE AL  HSE++AIAF
Sbjct: 992  VAGDRSHPKTDEIYVVLDKLELLMRRAGY---EADKGLDVEDELKEKALGYHSERIAIAF 1048

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             L+ TPP T ++IVKNLRVC DCH+ATK+IS +  REI+VRD  RFHHF +
Sbjct: 1049 GLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSN 1099



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF----GDDIHVQNTLVHMYG 56
           +LE   +PN +T   +L ACA   DL +G+S+H  + +            V N +++MY 
Sbjct: 118 LLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYA 177

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISGVCPDEITM 115
            C G +E    VF  + E+D VSW+AM G YA+      DA+ +FR+M +  + P+ IT 
Sbjct: 178 KC-GSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITF 236

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +T L ACT   +L  G W+ S + +  +       NALI+M+ KCGD + A  +F++M  
Sbjct: 237 ITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMAS 293

Query: 176 RT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           R    +VSW ++I+     GR  +A+A+F  +   G+ P+ V  + +L+A +  G+    
Sbjct: 294 RQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGA 353

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              F     + G +  +     ++ M  + G    A    +++  + + I W T++ A
Sbjct: 354 ARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 136/277 (49%), Gaps = 14/277 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH----VQNTLVHMYG 56
           ML+ GV P+  ++  VL +C          S    VL+    +  +    ++  L+ M+G
Sbjct: 532 MLQGGVLPDALSFTSVLSSCYC--------SQEAQVLRMCILESGYRSACLETALISMHG 583

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            C   +E  R VF+EM   D VSW+AM+   A      +  +LFR+MQ+ GV PD+ T+ 
Sbjct: 584 RCRE-LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLA 642

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T L  C     L +GK + + + +  +   + + NAL++M++ CGD  +AL  F +M  R
Sbjct: 643 TTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSW  + A  A  G   EAV LF +M   GV PD + F   L+      LV  G+  F
Sbjct: 703 DLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGK-LF 761

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
            ++  + G+   +     +V +  + G++ EA    +
Sbjct: 762 HALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFR 798



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 16/299 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   ++PN  T+   L AC  + D   G  +H  + +   G D    N L++MYG C G
Sbjct: 224 MLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFDPLASNALINMYGKC-G 279

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             E    VF  M+ R   D VSW+AMI      G   DA+ +FR++++ G+ P+ +T++T
Sbjct: 280 DWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 118 VLSACT----DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           +L+A      D GA    +     I +    R V + NA+I M+AKCG    A  +FR +
Sbjct: 340 ILNALAASGVDFGA---ARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRI 396

Query: 174 NGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
             +  ++SW +++          + V  F  ML AG+ P+ V+F+ +L+ACS+   +D G
Sbjct: 397 RWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG 456

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISA 290
           R+    +        +      +V M  + G + EA    ++MP+ +  ++ W  ++ A
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 150/303 (49%), Gaps = 13/303 (4%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L++C    DL  GK  H  +        + + N L++MY  C G +E    +F +M
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRC-GSLEEAHAIFSKM 86

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVG 131
            ER+ VSW+A+I   A+ G    A  LFR M + S   P+  T+V +L+AC +   L +G
Sbjct: 87  EERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 132 KWVESFIEKQMVNRSVGLC----NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + + + I +  + R+        NA+I+M+AKCG ++ A+ +F ++  + +VSWT++   
Sbjct: 147 RSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGA 206

Query: 188 LAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
            A   R   +A+ +F EML   + P+ + F+  L AC+   L D    +    +   G  
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT--SLRDGTWLHSLLHEASLGFD 264

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI--EANPIIWRTLISACCARGELKLAESIT 304
           P   +   +++M  + G  + A+   + M    E + + W  +ISA    G    A +I 
Sbjct: 265 PLASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIF 322

Query: 305 KRL 307
           +RL
Sbjct: 323 RRL 325



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 163/385 (42%), Gaps = 52/385 (13%)

Query: 5   GVSPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN  T   +L A A  G D    +  HG + +  +  D+ + N ++ MY  C G   
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKC-GFFS 387

Query: 64  LGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               VF  +  + D +SW+ M+G           ++ F  M ++G+ P++++ + +L+AC
Sbjct: 388 AAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNAC 447

Query: 123 TDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRT 177
           ++  AL+ G+ + S I    +  V  SV     L+ M+ KCG + +A  +F+ M    R+
Sbjct: 448 SNSEALDFGRKIHSLILTRRRDYVESSVA--TMLVSMYGKCGSISEAELVFKEMPLPSRS 505

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-------------- 223
           +V+W  ++   A + R  EA     EML+ GV PD ++F  +LS+C              
Sbjct: 506 LVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCIL 565

Query: 224 -----------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
                              C  +++ R  F+ M  D G    +  +  MV     +   K
Sbjct: 566 ESGYRSACLETALISMHGRCRELEQARSVFNEM--DHG---DVVSWTAMVSATAENRDFK 620

Query: 267 EAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITKRL--IGNEPMHESNYVLL 321
           E H   ++M +E    +     T +  C A   L L + I   +  IG E        LL
Sbjct: 621 EVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALL 680

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGM 346
            ++Y+    W +     E M  R +
Sbjct: 681 -NMYSNCGDWREALSFFETMKARDL 704



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           +  LL +C     + KG+   + + N  G+   +    C+++M  R G ++EAH    KM
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANA-GLEQHLFLGNCLINMYVRCGSLEEAHAIFSKM 86

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
             E N + W  LISA    G    A ++ + ++       ++Y L++ + A
Sbjct: 87  E-ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 303/493 (61%), Gaps = 23/493 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   ++ A      ++  + +HG V+K     + ++QN L+ MY S  G I+ 
Sbjct: 314 GLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMY-SRMGDIKT 372

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------------ISGV 108
            +++FD M +RD VSW+ +I  Y   G S+DA+ L  +MQ                    
Sbjct: 373 SKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPF 432

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P+ IT++TVL  C  L AL  GK + ++  + ++   V + +AL+DM+AKCG ++ A +
Sbjct: 433 KPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARR 492

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-----VPPDDVAFVGLLSAC 223
           +F  M  R +++W  +I    MHG+G E++ LFE+M+  G     V P +V F+ L ++C
Sbjct: 493 VFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASC 552

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI- 282
           SH G+VD+G   F  MKN+ GI P  +HY C+VD++ R+G+V+EA+  +  MP   + + 
Sbjct: 553 SHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVG 612

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
            W +L+ AC     +++ E   + L+  +P   S+YVLLS+IY+    W+K   +R  M 
Sbjct: 613 AWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMK 672

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
             G+KK PG + IE  +E+++F+ GD SH QS+++++ L+ +  ++KK GYVP T+ VL 
Sbjct: 673 AMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLH 732

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI+EE+KE  L  HSEKLAIAF +L TPPGT IR+ KNLRVCNDCH+A+KFISKI +REI
Sbjct: 733 DIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREI 792

Query: 463 VVRDRHRFHHFKD 475
           ++RD  RFHHFKD
Sbjct: 793 ILRDARRFHHFKD 805



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 8/295 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD--DIHVQNTLVHMYGSC 58
           M+  G SP+ F +P VLKA AGI +L LGK +H  V KF +G    + + NTLV+MYG C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            GG+    KVFD ++ERD VSW+++I    R      AI  FR M + G  P   T+V++
Sbjct: 61  -GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSM 119

Query: 119 LSACTDL---GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
             AC++L     L +GK +     ++   R+    NAL+ M+AK G +D A  L      
Sbjct: 120 ALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFED 178

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R +V+W S+I+  + + R +EA+     M+  GV PD V F  +L ACSH  L+  G+E 
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                    +I        +VDM C  G+V E+   +    ++    +W  +I+ 
Sbjct: 239 HAYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMIAG 292



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 155/319 (48%), Gaps = 27/319 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI----HVQNTLVHMYG 56
           M+  GV P+  T+  VL AC+ +  L  GK +H   L+    DD+     V + LV MY 
Sbjct: 207 MVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALR---TDDVIENSFVGSALVDMYC 263

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITM 115
           +C G +E GR VFD + +R    W+AMI GYA+      A+ LF +M+ + G+  +  TM
Sbjct: 264 NC-GQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTM 322

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            +++ A      +   + +  ++ K+ +  +  L NALIDM+++ GD+  + ++F SM  
Sbjct: 323 SSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMED 382

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEML--------------EAGVP--PDDVAFVGL 219
           R IVSW ++I    + GR  +A+ L  EM               E  VP  P+ +  + +
Sbjct: 383 RDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTV 442

Query: 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           L  C+    + KG+E       +  +  ++     +VDM  + G +  A     +MPI  
Sbjct: 443 LPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR- 500

Query: 280 NPIIWRTLISACCARGELK 298
           N I W  +I A    G+ K
Sbjct: 501 NVITWNVIIMAYGMHGKGK 519


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 298/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P+ +T   ++ ACA    L+ G+ VH  V+K   G ++ V N L++MY  C G
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKC-G 446

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF ++  +D VSW+ MIGGY++  L  +A++LF  MQ     PD+ITM  VL 
Sbjct: 447 SVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLP 505

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L AL+ G+ +   I ++     + +  AL+DM+AKCG +  A  LF  +  + ++S
Sbjct: 506 ACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 565

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA++ F EM  AG+ PD+ +F  +L+ACSH GL+++G ++F+SM+
Sbjct: 566 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMR 625

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N+ G+ PK+EHY C+VD+L R G + +A++FI+ MPI+ +  IW  L+S C    ++KLA
Sbjct: 626 NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 685

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + + +   EP +   YV+L+++YA+  +WE+  K+R+ M KRG K+ PG + IE+  +
Sbjct: 686 EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 745

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
              FV G+  H Q+K+I  +L ++  +M+   Y      VL++ ++ +KE     HSEK 
Sbjct: 746 FNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKS 805

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF +L  PPG  +R+ KN RVC DCH   KF+SK    EIV+RD +RFHHFKD
Sbjct: 806 AMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKD 860



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 162/289 (56%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  N +T+  VLK  A +G +   K VHG VLK  FG +  V N+L+  Y    G
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKF-G 244

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+E    +FDE+SE D VSW++MI G    G S + +++F QM I GV  D  T+V+VL 
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC ++G L +G+ +  F  K   +  V   N L+DM++KCG+++ A ++F  M   TIVS
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 364

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           WTS+IA     G   +A+ LF+EM   GV PD      ++ AC+    +DKGR+     +
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           KN  G    +     +++M  + G V+EA     K+P++ + + W T+I
Sbjct: 425 KNGMG--SNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMI 470



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 26/334 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV  +  T   VL ACA IG+L+LG+++HG  +K  F +++   NTL+ MY  C G
Sbjct: 287 MLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC-G 345

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF +M +   VSW+++I  Y R GL +DAI LF +MQ  GV PD  T+ +++ 
Sbjct: 346 NLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVH 405

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    +L+ G+ V S++ K  +  ++ + NALI+M+AKCG V++A  +F  +  + IVS
Sbjct: 406 ACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS 465

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE------ 234
           W ++I G + +    EA+ LF +M +    PDD+    +L AC+    +DKGRE      
Sbjct: 466 WNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHIL 524

Query: 235 ---YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              YF  +           H  C +VDM  + G +  A      +P + + I W  +I+ 
Sbjct: 525 RRGYFSDL-----------HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAG 572

Query: 291 CCARGELKLAESITK--RLIGNEPMHESNYVLLS 322
               G    A S     R+ G EP   S   +L+
Sbjct: 573 YGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN 606



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +Y  VL+ CA    L  GK VH  ++      D  +   LV MY +C G +  GRK+FD+
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNC-GDLVQGRKIFDK 154

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +       W+ ++  YA++G   +++ LF++MQ  GV  +  T   VL     LG ++  
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K V  ++ K     +  + N+LI  + K G V+ A  LF  ++   +VSW S+I G  ++
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP---- 247
           G     + +F +ML  GV  D    V +L AC++ G +  GR       + FG+      
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL-----HGFGVKACFSE 329

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           ++     ++DM  + G +  A E   KM  +   + W ++I+A
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAA 371


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/476 (40%), Positives = 295/476 (61%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+SP+ +T   VL  CA    L+ GK VH  + +   G DI V N L+ MY  C G
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC-G 295

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            ++    VF EM  +D +SW+ +IGGY++   + +A+ LF  + +     PDE T+  VL
Sbjct: 296 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 355

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L A + G+ +  +I +        + N+L+DM+AKCG +  A  LF  +  + +V
Sbjct: 356 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 415

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT +IAG  MHG G EA+ALF +M +AG+  D+++FV LL ACSH GLVD+G  +F+ M
Sbjct: 416 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 475

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +++  I P +EHY C+VDML R+G + +A+ FI+ MPI  +  IW  L+  C    ++KL
Sbjct: 476 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 535

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE + +++   EP +   YVL+++IYA+  +WE+  ++R+ + +RG++K PG + IE+  
Sbjct: 536 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 595

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +  FV GD S+ +++ I   L ++  +M + GY P T   L+D  E +KE+AL  HSEK
Sbjct: 596 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 655

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A  ++ +  G  IR+ KNLRVC DCH   KF+SK+  REIV+RD +RFH FKD
Sbjct: 656 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 711



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 171/289 (59%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  + +T+  V K+ + +  ++ G+ +HG +LK  FG+   V N+LV  Y   + 
Sbjct: 35  MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 94

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RKVFDEM+ERD +SW+++I GY   GL+   + +F QM +SG+  D  T+V+V +
Sbjct: 95  -VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 153

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C D   + +G+ V S   K   +R    CN L+DM++KCGD+D A  +FR M+ R++VS
Sbjct: 154 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 213

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           +TS+IAG A  G   EAV LFEEM E G+ PD      +L+ C+   L+D+G+   + +K
Sbjct: 214 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 273

Query: 241 -NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            ND G    + +   ++DM  + G ++EA     +M ++ + I W T+I
Sbjct: 274 ENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 319



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+  +  T   V   CA    ++LG++VH   +K  F  +    NTL+ MY  C G
Sbjct: 136 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC-G 194

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VF EMS+R  VS+++MI GYAR GL+ +A+ LF +M+  G+ PD  T+  VL+
Sbjct: 195 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 254

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C     L+ GK V  +I++  +   + + NAL+DM+AKCG + +A  +F  M  + I+S
Sbjct: 255 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 314

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDS- 238
           W ++I G + +    EA++LF  +LE     PD+     +L AC+     DKGRE     
Sbjct: 315 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 374

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M+N  G          +VDM  + G +  AH     +    + + W  +I+ 
Sbjct: 375 MRN--GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 423



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 32/261 (12%)

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDE+    ++ W+ ++   A+ G  + +I LF++M  SGV  D  T   V  + + L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G+ +  FI K        + N+L+  + K   VD A K+F  M  R ++SW S+I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY------------- 235
             +G   + +++F +ML +G+  D    V + + C+   L+  GR               
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 236 ---------------FDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
                           DS K  F  +    +  Y  M+    R G   EA +  ++M  E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 279 A-NPIIWR-TLISACCARGEL 297
             +P ++  T +  CCAR  L
Sbjct: 241 GISPDVYTVTAVLNCCARYRL 261


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/480 (41%), Positives = 296/480 (61%), Gaps = 5/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  + FT   VL A   + DL  G+  HG ++K  F  + HV + L+ +Y  C G
Sbjct: 234 MVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAG 293

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +   RKVF+E++  D V W+ MI G++    LS D +  FR+MQ +G  PD+ + V V 
Sbjct: 294 SMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVT 353

Query: 120 SACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           SAC++L +  +GK V +  I+  +    V + NAL+ M++KCG+V  A ++F +M     
Sbjct: 354 SACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNT 413

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS  S+IAG A HG  +E++ LFE MLE  + P+ + F+ +LSAC H G V++G++YF+ 
Sbjct: 414 VSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNM 473

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK  F I P+ EHY CM+D+L R+G++KEA   I+ MP     I W TL+ AC   G ++
Sbjct: 474 MKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LA       +  EP + + YV+LS++YA   RWE+   ++ +M +RG+KK PG + IE+D
Sbjct: 534 LAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEID 593

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL---DINEEDKEDALNK 415
            +++ FV  D SH   KEI+  + +M +KMK+AGYVP     L+   ++  +++E  L  
Sbjct: 594 KKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLY 653

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLA+AF L+ T  G PI +VKNLR+C DCH+A K IS +  REI VRD HRFH FK+
Sbjct: 654 HSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKE 713



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 15/293 (5%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           FT   V+ AC    D+ L + +H  V+         V N ++  Y S +G +   R+VF 
Sbjct: 142 FTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACY-SRKGFLSEARRVFR 198

Query: 71  EMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           EM E   RD VSW+AMI    +     +A+ LFR+M   G+  D  TM +VL+A T +  
Sbjct: 199 EMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKD 258

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIA 186
           L  G+     + K   + +  + + LID+++KC G + +  K+F  +    +V W ++I+
Sbjct: 259 LVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMIS 318

Query: 187 GLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           G +++    E  +  F EM   G  PDD +FV + SACS+      G++ +  ++K+D  
Sbjct: 319 GFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSD-- 376

Query: 245 IIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +P  ++     +V M  + G V +A      MP E N +   ++I+     G
Sbjct: 377 -VPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQHG 427



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 133/270 (49%), Gaps = 19/270 (7%)

Query: 31  SVHGAVLKFQFGD--DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           S+H A   F      ++   NTL++ Y      I + R+VFDE+ + D VS++ +I  YA
Sbjct: 59  SLHNAQTSFHLTQYPNVFSYNTLINAYAK-HSLIHIARRVFDEIPQPDIVSYNTLIAAYA 117

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG--KWVESFIEKQMVNRS 146
             G     + LF +++   +  D  T+  V++AC D    +VG  + +  F+     +  
Sbjct: 118 DRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGD----DVGLVRQLHCFVVVCGHDCY 173

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSM---NGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             + NA++  +++ G + +A ++FR M    GR  VSW ++I     H  G+EAV LF E
Sbjct: 174 ASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFRE 233

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGC-MVDMLCR 261
           M+  G+  D      +L+A +    +  GR++   M K+ F       H G  ++D+  +
Sbjct: 234 MVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFH---GNSHVGSGLIDLYSK 290

Query: 262 -SGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +G + E  +  +++    + ++W T+IS 
Sbjct: 291 CAGSMVECRKVFEEI-TAPDLVLWNTMISG 319


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/502 (39%), Positives = 303/502 (60%), Gaps = 32/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN FT+  V KAC G+   ++GKSVHG  LK ++  D++V   L+ +Y    G I+ 
Sbjct: 235 GFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTK-SGDIDD 293

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+ F+E+ ++D + WS MI  YA+   S +A+++F QM+ + V P++ T  +VL AC  
Sbjct: 294 ARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACAT 353

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  L +G  +   + K  ++  V + NAL+D++AKCG ++ +++LF     R  V+W +V
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 413

Query: 185 IAGLAMHGRGLEAVALFEEMLE-------------------------------AGVPPDD 213
           I G    G G +A+ LF  MLE                                 V PD 
Sbjct: 414 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDK 473

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           + FVG+LSAC++ GL+D+G+ YF SM  D GI P IEHY CMV +L R G + +A + I 
Sbjct: 474 LTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLID 533

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
           ++P + + ++WR L+ AC    +++L     +R++  EP  ++ +VLLS++YA   RW+ 
Sbjct: 534 EIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDN 593

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
              +R+ M ++G+KK PG + IE    ++ F  GD SH + + I  ML+ +  K KKAGY
Sbjct: 594 VASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGY 653

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           +P  + VLLD+ +E+KE  L  HSE+LA++F +++TP G+PIRI+KNLR+C DCH+A K 
Sbjct: 654 IPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKC 713

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           ISK+  REIVVRD +RFHHF++
Sbjct: 714 ISKVVQREIVVRDINRFHHFQE 735



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 3/280 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F +  +LK         LG  +H  + K     +  V   L+  Y  C G +++ R+V
Sbjct: 138 NPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVC-GRVDVAREV 196

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD +  +D VSW+ M+  +A      +A+ LF QM++ G  P+  T  +V  AC  L A 
Sbjct: 197 FDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAF 256

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           +VGK V     K      + +  AL+D++ K GD+D A + F  +  + ++ W+ +IA  
Sbjct: 257 DVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARY 316

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A   +  EAV +F +M +A V P+   F  +L AC+    ++ G +    +    G+   
Sbjct: 317 AQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSD 375

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +     ++D+  + GR++ + E   + P   N + W T+I
Sbjct: 376 VFVSNALMDVYAKCGRMENSMELFAESP-HRNDVTWNTVI 414



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 22/295 (7%)

Query: 6   VSPNKFT---YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           VSP++F    Y   L+ C    + + GK +H  +LK     D+   N L++MY   +   
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLS 120
           +   K+FDEM ER+++S+  +I GYA      +AI+LF ++   G  + P   T +  L 
Sbjct: 91  D-ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLL 149

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             TD G L  G     F      N  VG   ALID ++ CG VD A ++F  +  + +VS
Sbjct: 150 VSTDCGELGWGIHACIFKLGHESNAFVG--TALIDAYSVCGRVDVAREVFDGILYKDMVS 207

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT ++   A +    EA+ LF +M   G  P++  F  +  AC        G E FD  K
Sbjct: 208 WTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC-------LGLEAFDVGK 260

Query: 241 NDFGIIPKIEHY------GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +  G   K  +         ++D+  +SG + +A    +++P + + I W  +I+
Sbjct: 261 SVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIA 314


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/505 (39%), Positives = 300/505 (59%), Gaps = 37/505 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G    K T+  +L AC+ +  L  G+ VH  +L+     ++ V   LV+MY  C G +E 
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKC-GSLEE 361

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDA---------------------------- 96
            RKVF+ M  RD+V+WS +IG YA  G   DA                            
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQN 421

Query: 97  ------IDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                 + +FR+M   +G+ PD +T + VL AC  LG L   K + + I +  +  +V +
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            N LI+M+A+CG +++A +LF +   +T+VSWT+++A  + +GR  EA+ LF+EM   GV
Sbjct: 482 TNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PDDV +  +L  C+H G +++G  YF  M    G+ P  +H+  MVD+L RSGR+ +A 
Sbjct: 542 KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAK 601

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E ++ MP E +P+ W T ++AC   G+L+L E+  +R+   +P   + Y+ +S+IYA   
Sbjct: 602 ELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            WEK   +R+ M++RG+KK+PG + IE+D +++EF  G K H ++ EI E L  +   M+
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMR 721

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKT-PPGTPIRIVKNLRVCNDCH 448
            AGYVP T  VL D++E +KE  L  HSEK+AIAF L+ +   G PIR+VKNLRVC+DCH
Sbjct: 722 AAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCH 781

Query: 449 SATKFISKIYNREIVVRDRHRFHHF 473
           +ATKFI++I  R+I++RD +RFH F
Sbjct: 782 TATKFIARIAGRDIILRDCNRFHRF 806



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 172/343 (50%), Gaps = 8/343 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  TY  V+   +    L  G+ +H  ++   F  D+ V   L++MYG C G     R+
Sbjct: 205 PNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKC-GSSHEARE 263

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD+M +RD VSW+ MIG Y + G   +A++L++++ + G    + T V++L AC+ + A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L  G+ V S I ++ ++  V +  AL++M+AKCG +++A K+F +M  R  V+W+++I  
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A +G G +A    +     G   D + +  +++     G      + F  M    G+ P
Sbjct: 384 YASNGYGKDARKARKVFDRLG-SRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442

Query: 248 KIEHYGCMVDMLCRSGR---VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               +  +++     GR   VK  H  I +  +E+N ++  TLI+     G L+ AE + 
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL- 501

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
                 +     ++  +   +++  R+ +   + + MD  G+K
Sbjct: 502 --FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVK 542



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T+  VL +C+  GD+  G+++H  +   +F  D  V N L+ MYG C+  ++  R 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD-ARS 63

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF+ M   +R+ VSW+AMI  YA+ G ST+A+ L+ +M + G+  D +T V+VL AC+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                G+ + + +    ++    L NAL+ M+A+ G V  A ++F+S+  R   SW +VI
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
              +  G    A+ +F+EM +  + P+   ++ ++S  S   ++ +GR+    +  + G 
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GF 238

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     +++M  + G   EA E   KM  + + + W  +I      G+   A  + +
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 306 RL 307
           +L
Sbjct: 298 KL 299


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/476 (40%), Positives = 295/476 (61%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+SP+ +T   VL  CA    L+ GK VH  + +   G DI V N L+ MY  C G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC-G 446

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            ++    VF EM  +D +SW+ +IGGY++   + +A+ LF  + +     PDE T+  VL
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L A + G+ +  +I +        + N+L+DM+AKCG +  A  LF  +  + +V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT +IAG  MHG G EA+ALF +M +AG+  D+++FV LL ACSH GLVD+G  +F+ M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +++  I P +EHY C+VDML R+G + +A+ FI+ MPI  +  IW  L+  C    ++KL
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE + +++   EP +   YVL+++IYA+  +WE+  ++R+ + +RG++K PG + IE+  
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +  FV GD S+ +++ I   L ++  +M + GY P T   L+D  E +KE+AL  HSEK
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A  ++ +  G  IR+ KNLRVC DCH   KF+SK+  REIV+RD +RFH FKD
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 171/289 (59%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  + +T+  V K+ + +  ++ G+ +HG +LK  FG+   V N+LV  Y   + 
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 245

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RKVFDEM+ERD +SW+++I GY   GL+   + +F QM +SG+  D  T+V+V +
Sbjct: 246 -VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C D   + +G+ V S   K   +R    CN L+DM++KCGD+D A  +FR M+ R++VS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           +TS+IAG A  G   EAV LFEEM E G+ PD      +L+ C+   L+D+G+   + +K
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424

Query: 241 -NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
            ND G    + +   ++DM  + G ++EA     +M ++ + I W T+I
Sbjct: 425 ENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+  +  T   V   CA    ++LG++VH   +K  F  +    NTL+ MY  C G
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC-G 345

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VF EMS+R  VS+++MI GYAR GL+ +A+ LF +M+  G+ PD  T+  VL+
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C     L+ GK V  +I++  +   + + NAL+DM+AKCG + +A  +F  M  + I+S
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDS- 238
           W ++I G + +    EA++LF  +LE     PD+     +L AC+     DKGRE     
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M+N  G          +VDM  + G +  AH     +    + + W  +I+ 
Sbjct: 526 MRN--GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 574



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 33/314 (10%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL+ CA    L  GK V   +    F  D ++ + L  MY +C G ++   +VFDE+   
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNC-GDLKEASRVFDEVKIE 158

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            ++ W+ ++   A+ G  + +I LF++M  SGV  D  T   V  + + L ++  G+ + 
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            FI K        + N+L+  + K   VD A K+F  M  R ++SW S+I G   +G   
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-------------------- 235
           + +++F +ML +G+  D    V + + C+   L+  GR                      
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 338

Query: 236 --------FDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIW 284
                    DS K  F  +    +  Y  M+    R G   EA +  ++M  E  +P ++
Sbjct: 339 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 285 R-TLISACCARGEL 297
             T +  CCAR  L
Sbjct: 399 TVTAVLNCCARYRL 412



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 4/186 (2%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           D  T+ +VL  C D  +L+ GK V++FI          L + L  M+  CGD+ +A ++F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             +     + W  ++  LA  G    ++ LF++M+ +GV  D   F  +  + S    V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 231 KGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            G +     +K+ FG    + +   +V    ++ RV  A +   +M  E + I W ++I+
Sbjct: 213 GGEQLHGFILKSGFGERNSVGN--SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIIN 269

Query: 290 ACCARG 295
              + G
Sbjct: 270 GYVSNG 275


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 284/467 (60%), Gaps = 2/467 (0%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
            F +   LKAC+ +GDL  G++VH  VLK     D  V N L+ +Y S +G  E   ++F
Sbjct: 177 NFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLY-SEDGCFEEALRMF 235

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D M  R+ VSW+++I G  +     +AI+ FR MQ  G+    +T+ T+L  C  + AL 
Sbjct: 236 DGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALG 295

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
            GK + + I K        + N+L+DM+AKCG +D   ++F  M G+ + SW ++I G A
Sbjct: 296 SGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYA 355

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
           ++GR  EA+  F+EM+ +G  PD + F+ LLS CSH GL D G   F+ MK D GI P +
Sbjct: 356 INGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTV 415

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EHY C+VD+L R+GR+KEA E ++ MP +    IW +L+++C   G + LAE++ KRL  
Sbjct: 416 EHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFE 475

Query: 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDK 369
            EP +  NYV+LS+IYA    WE    +RE M+KRGM K  G + +++ ++I+ FV G  
Sbjct: 476 LEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGS 535

Query: 370 SH-HQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           +    S E  ++   +   M++ GYVP T  VL D++EE +   +  HSE+LA  FAL+ 
Sbjct: 536 NEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALIN 595

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           T  G PIRI KNLRVC DCHS  K +SK+  R IV+RD +RFHHFKD
Sbjct: 596 TASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKD 642



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 213/481 (44%), Gaps = 60/481 (12%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           T   +L  CA +  L  GK +H  ++K     D  V N+LV MY  C G ++  R+VF+ 
Sbjct: 280 TLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKC-GAMDYCRRVFNG 338

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M  +D  SW+ +I GYA  G  T+A++ F++M  SG  PD IT + +LS C+  G  + G
Sbjct: 339 MQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDG 398

Query: 132 -KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIAGLA 189
            +  E       ++ +V     L+D+  + G + +AL++ ++M  +   S W S++    
Sbjct: 399 CRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCR 458

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGL---VDKGREYFDSMKNDFGI 245
           +HG    A A+ + + E  + P++   +V L +  ++ G+   V   RE+          
Sbjct: 459 LHGNVPLAEAVAKRLFE--LEPNNAGNYVMLSNIYANAGMWESVKVVREF---------- 506

Query: 246 IPKIEHYGCMVDMLCRSGRVK-EAHEFIQKMPIE-ANPI----IWRTLISACCARGELK- 298
              +E  G   +  C   ++K + H F+     E  N +    +W+ L+ A    G +  
Sbjct: 507 ---MEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPD 563

Query: 299 -------LAESITKRLI-GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD----KRGM 346
                  ++E +    + G+     + + L++      +R  K   +R  +D     + +
Sbjct: 564 TGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKN--LRVCVDCHSWVKTL 621

Query: 347 KKIPGSTLIELD-NEIYEFVCGDKSHHQSKEIYEMLDE----------MGRKMKKAGYVP 395
            K+ G  ++  D N  + F  G  S  Q   +Y++  E             K   A  + 
Sbjct: 622 SKVTGRVIVLRDTNRFHHFKDGVCSSIQISTVYKIFQENLDGDTVGNPFASKPAFACGIE 681

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
                L + + E   D        LA  FAL+ T  G PIRI KNL VC DCHS  K +S
Sbjct: 682 QCVCFLPNFSNEGNVDVW------LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVS 735

Query: 456 K 456
           K
Sbjct: 736 K 736



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 116/265 (43%), Gaps = 6/265 (2%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS---WSAMIGGYARLGLSTDAIDLFRQM 103
           ++  L+ ++  C G ++  R+VF++  E   +    W AM  GY+R G   +A+ L+ +M
Sbjct: 110 LKGKLITLFSVC-GRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEM 168

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
                          L AC+DLG L  G+ V + + K   +    + NAL+ ++++ G  
Sbjct: 169 VCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCF 228

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++AL++F  M  R +VSW S+IAGL       EA+  F  M   G+    V    +L  C
Sbjct: 229 EEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVC 288

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +    +  G+E    +       P       +VDM  + G +         M  + +   
Sbjct: 289 ARVTALGSGKEIHAVIVKSTA-KPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK-DLTS 346

Query: 284 WRTLISACCARGELKLAESITKRLI 308
           W TLI+     G +  A    + +I
Sbjct: 347 WNTLITGYAINGRMTEAMESFQEMI 371


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 285/479 (59%), Gaps = 31/479 (6%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC----------------------------- 58
           LG  VH   +K     D+ V+N LVH YG                               
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 59  --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G + + R+VFDEM  RD +SWS ++GGY +      A+ +FR M   GV P++  +V
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T LSA   LG LE GK+V + +++  +   + +  AL+DM+AKCG V  A ++F  M  R
Sbjct: 284 TALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRR 343

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W ++I GLA HG G +AV LFE  +  G+ P +V FVG+L+ CS  GLV +GR YF
Sbjct: 344 DVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYF 403

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +   + I P++EHYGCMVD+L R+G V EA E I+ M I  +P++W T++S+C   G 
Sbjct: 404 KLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGL 463

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + L  S+  +LI  +P H   YVLLS IYAK  +W++  ++R++M  RG  K  G +L+E
Sbjct: 464 VDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLME 523

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
              ++++F+ GD  H  S +IY+ LD + +++ +AGYVP  S VL DI EE+K  A+  H
Sbjct: 524 AHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVH 583

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIA+  +    G+PIRIVKNLRVC DCH  +K ++ ++ REI+VRD  RFHH K+
Sbjct: 584 SERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKE 642



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV PN+      L A A +G L  GK VH  V +      ++V   LV MY  C G
Sbjct: 270 MVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKC-G 328

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + R+VFD M  RD  +W+AMI G A  GL  DA++LF +    G+ P  +T V VL+
Sbjct: 329 CVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLN 388

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
            C+  G +  G ++ +  +EK  +   +     ++D+  + G V +A++L   M+     
Sbjct: 389 GCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDP 448

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           V W ++++    HG     V++  +++E  + P    +  LLS
Sbjct: 449 VLWGTILSSCKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLS 489


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/460 (43%), Positives = 291/460 (63%), Gaps = 1/460 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            L+ACA +  L +G+ +H  + K     D+   N+L+ MY    G I+    +FDEM+ +
Sbjct: 346 ALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVK 404

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D+VS+SA++ GY + G + +A  +F++MQ   V PD  TMV+++ AC+ L AL+ G+   
Sbjct: 405 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             +  + +     +CNALIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G 
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA ALF EM   G PPD V F+ LLSACSH GLV +G+ +F  M++ +G+ P++EHY CM
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R G + EA+EFIQ MP+ A+  +W  L+ AC     + L + +++ +    P   
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
            N+VLLS+IY+   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH QS 
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           EIY  LD +   +KK GY P TS VL D+ EE+KE AL  HSEKLAIA+ +L       I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + KNLRVC DCH+  K IS +  R I+VRD +RFHHFK+
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKN 804



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 14/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL----------KFQFGDDIHVQNT 50
           M  + + PN  T   +L   A  G L  G SVH   +          K +  D + +   
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTA 278

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC- 109
           L+ MY  C G +   R+VFD M  R+ V+WSA+IGG+      T A  LF+ M   G+C 
Sbjct: 279 LLDMYAKC-GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
               ++ + L AC  L  L +G+ + + + K  V+  +   N+L+ M+AK G +D+A+ L
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  +  VS++++++G   +GR  EA  +F++M    V PD    V L+ ACSH   +
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR    S+    G+  +      ++DM  + GR+  + +    MP   + + W T+I+
Sbjct: 458 QHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIA 515



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 174/399 (43%), Gaps = 64/399 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PN +T+PF LKAC+ + D + G+++H   +      D+ V   L+ MY  C  
Sbjct: 116 MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKC-A 174

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID--LFRQMQISGVCPDEITMVTV 118
            +     +F  M  RD V+W+AM+ GYA  G+   A+   L  QMQ+  + P+  T+V +
Sbjct: 175 CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 234

Query: 119 LSACTDLGALEVGKWVESFI----------EKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
           L      GAL  G  V ++            K  +   V L  AL+DM+AKCG +  A +
Sbjct: 235 LPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 294

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML----------------------- 205
           +F +M  R  V+W+++I G  +  R  +A  LF+ ML                       
Sbjct: 295 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 354

Query: 206 -------------EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
                        ++GV  D  A   LLS  +  GL+D+    FD M      +     Y
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-----VKDTVSY 409

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAE----SITK 305
             +V    ++GR +EA    +KM    +E +     +LI AC     L+       S+  
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           R + +E    S    L  +YAK  R +   ++  +M  R
Sbjct: 470 RGLASE---TSICNALIDMYAKCGRIDLSRQVFNMMPSR 505



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG--LSTDAIDLFRQMQISGVCPDEITMV 116
            G +     +FD++   D  +++ +I  Y+      + D + L+R+M    V P+  T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
             L AC+ L     G+ +        +   + +  AL+DM+ KC  +  A  +F +M  R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 177 TIVSWTSVIAGLAMHGRGLEAVA--LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-- 232
            +V+W +++AG A HG    AVA  L  +M    + P+    V LL   +  G + +G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 233 ------REYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
                 R    S +N    +      G  ++DM  + G +  A      MP   N + W 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWS 308

Query: 286 TLI 288
            LI
Sbjct: 309 ALI 311


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 294/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +LKA    G  ++G+ +H   +K+ + +D++V + L+ MY  CE 
Sbjct: 49  MLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQ 108

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD +  ++ VSW+A+I G+AR       +  F +MQ +G      T  ++ S
Sbjct: 109 -MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFS 167

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +GALE G+WV + + K     +  + N ++ M+AK G +  A K+F  M+ R +V+
Sbjct: 168 AFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT 227

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++  LA +G G EAVA FEE+ + G+  + + F+ +L+ACSH GLV +G+ YFD MK
Sbjct: 228 WNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK 287

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ + P+I+HY   VD+L R+G +KEA  F+ KMP+E    +W  L+ AC      K+ 
Sbjct: 288 -DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMG 346

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W    ++R++M   G+KK P  + ++++N 
Sbjct: 347 QYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENS 406

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +S +IY M +E+  ++KKAGYVP T+ VLL INE+++E  L  HSEK+
Sbjct: 407 VHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKI 466

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+  P G  IRI+KN+R+C DCHSA K++SK++ REIVVRD +RFHHF +
Sbjct: 467 ALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSE 521



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
           MY  C G +   R VFD+M  RD VSW+ +I GYA+  +  +AI L   M  +   P+  
Sbjct: 1   MYCKC-GAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGF 59

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T  ++L A    G   +G+ + +   K   +  V + +AL+DM+A+C  +D A+ +F  +
Sbjct: 60  TFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             +  VSW ++IAG A    G   +  F EM   G       +  + SA +  G +++GR
Sbjct: 120 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 179

Query: 234 E-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
             +   +K+   +   + +   M+ M  +SG + +A +   +M  + + + W T+++A  
Sbjct: 180 WVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALA 236

Query: 293 ARG 295
             G
Sbjct: 237 QYG 239


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/432 (43%), Positives = 269/432 (62%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   NT++  YG   GGI   RK+FD M +RD VSW+A+I GYA+ G   +A+++F +M
Sbjct: 324 NISSWNTMITGYGQ-NGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +  G   +  T    LS C D+ ALE+GK V   + K        + NAL+ M+ KCG  
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D+A  +F  +  + +VSW ++IAG A HG G +A+ LFE M +AGV PD++  VG+LSAC
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GL+D+G EYF SM  D+ + P  +HY CM+D+L R+GR++EA   ++ MP +     
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS 562

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A    G  +L E   + +   EP +   YVLLS++YA   RW    K+R  M +
Sbjct: 563 WGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMRE 622

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G++K+ G + +E+ N+I+ F  GD  H +   IY  L+E+  KM++ GYV +T  VL D
Sbjct: 623 AGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHD 682

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+AF +L  P G PIR++KNLRVC DCH+A K ISKI  R I+
Sbjct: 683 VEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLII 742

Query: 464 VRDRHRFHHFKD 475
           +RD HRFHHF +
Sbjct: 743 LRDSHRFHHFSE 754



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S N+ T+   L  CA I  L LGK VHG V+K  F     V N L+ MY  C G  + 
Sbjct: 386 GESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKC-GSTDE 444

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VF+ + E+D VSW+ MI GYAR G    A+ LF  M+ +GV PDEITMV VLSAC+ 
Sbjct: 445 ANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSH 504

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
            G ++ G ++  S      V  +      +ID+  + G +++A  L R+M       SW 
Sbjct: 505 SGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWG 564

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 565 ALLGASRIHG 574



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 27/272 (9%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT++  Y    G +   +++F+E   RD  +W+AM+ GY + G+  +A   F +M
Sbjct: 231 DVISWNTMISGYAQV-GDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 104 QISGVCPDEITMVTVLSACTDLGALEV-GKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
            +     +EI+   +L+       + + G+  E+     M  R++   N +I  + + G 
Sbjct: 290 PVK----NEISYNAMLAGYVQYKKMVIAGELFEA-----MPCRNISSWNTMITGYGQNGG 340

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           + +A KLF  M  R  VSW ++I+G A +G   EA+ +F EM   G   +   F   LS 
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALST 400

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV-----DMLCRSGRVKEAHEFIQKMPI 277
           C+    ++ G++          ++      GC V      M  + G   EA++  + +  
Sbjct: 401 CADIAALELGKQVHGQ------VVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE- 453

Query: 278 EANPIIWRTLISACC----ARGELKLAESITK 305
           E + + W T+I+        R  L L ES+ K
Sbjct: 454 EKDVVSWNTMIAGYARHGFGRQALVLFESMKK 485



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 41/261 (15%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+FD M ++D VSW+AM+ GYA+ G   +A ++F +M       + I+   +L+A    G
Sbjct: 129 KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNG 184

Query: 127 AL-EVGKWVES---------------FIEKQMVN-----------RSVGLCNALIDMFAK 159
            L E  +  ES               ++++ M+            R V   N +I  +A+
Sbjct: 185 RLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQ 244

Query: 160 CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
            GD+ +A +LF     R + +WT++++G   +G   EA   F+EM       +++++  +
Sbjct: 245 VGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVKNEISYNAM 300

Query: 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           L+       +    E F++M         I  +  M+    ++G + +A +    MP + 
Sbjct: 301 LAGYVQYKKMVIAGELFEAMP-----CRNISSWNTMITGYGQNGGIAQARKLFDMMP-QR 354

Query: 280 NPIIWRTLISACCARGELKLA 300
           + + W  +IS     G  + A
Sbjct: 355 DCVSWAAIISGYAQNGHYEEA 375



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           G C+  +    +VF+ M  R SVS++AMI GY R    + A DLF +M    +    + M
Sbjct: 60  GHCDSAL----RVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNV-M 114

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +T       LG  E  K  +   +K +V+      NA++  +A+ G VD+A ++F  M  
Sbjct: 115 LTGYVRNRRLG--EAHKLFDLMPKKDVVS-----WNAMLSGYAQNGFVDEAREVFNKMPH 167

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R  +SW  ++A    +GR  EA  LFE      +    +++  L+       ++   R+ 
Sbjct: 168 RNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL----ISWNCLMGGYVKRNMLGDARQL 223

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           FD M      +  +  +  M+    + G + +A     + PI  +   W  ++S     G
Sbjct: 224 FDRMP-----VRDVISWNTMISGYAQVGDLSQAKRLFNESPIR-DVFTWTAMVSGYVQNG 277



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 22/174 (12%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N  I    + G  D AL++F SM  R+ VS+ ++I+G   + +   A  LF++M E  + 
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLF 109

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEA 268
             +V   G +          + R   ++ K  F ++PK  +  +  M+    ++G V EA
Sbjct: 110 SWNVMLTGYV----------RNRRLGEAHK-LFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
            E   KMP   N I W  L++A    G LK A    +RL  +    +SN+ L+S
Sbjct: 159 REVFNKMP-HRNSISWNGLLAAYVHNGRLKEA----RRLFES----QSNWELIS 203


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 297/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  +  +  TY      C+ + DL LG  VH  + +     D  V + ++ MYG C G
Sbjct: 221 MVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKC-G 279

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   RKVF+ +  ++ VSW+A++  Y++ G   +A++ F +M++ G+ P+E T   +L+
Sbjct: 280 NILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLN 339

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  + AL  GK + + I+K      + + NALI+M++K G ++ A K+F  M  R  ++
Sbjct: 340 SCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSIT 399

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GL+ HG G EA+ +F+EML A   P  V FVG+LSAC+H G V +G  Y + + 
Sbjct: 400 WSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLM 459

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              GI P +EHY C+V +LC++GR+ EA  F++  P++ + + WRTL+SAC       L 
Sbjct: 460 KQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLG 519

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + + + ++  +P     Y+LLS++YAK  RW+   KIR++M +R +KK PG++ IE+ N 
Sbjct: 520 KKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNS 579

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV   K+H +S +IYE + E+   ++  GYVP  + V  D+ +E K + ++ HSEKL
Sbjct: 580 IHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKL 639

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+KTP G PIR++KNLR+C DCHSA K ISK+ NR I+VRD +RFH F D
Sbjct: 640 AIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGD 694



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 140/288 (48%), Gaps = 3/288 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN++ +  ++ +C+  G +  G   HG  LK       +V+N L+ MY S    ++    
Sbjct: 127 PNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMY-SRRSDVKGAMS 185

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           V+ E+   D  S++ +I G    G  ++A+++  +M    +  D +T VT    C+ L  
Sbjct: 186 VWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKD 245

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L +G  V   + +        + +A+IDM+ KCG++  A K+F  +  + +VSWT+++A 
Sbjct: 246 LRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAA 305

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            + +G   EA+  F EM   G+ P++  F  LL++C+    +  G+     +K   G   
Sbjct: 306 YSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS-GFED 364

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            I     +++M  +SG ++ AH+   +M I  + I W  +I      G
Sbjct: 365 HIIVGNALINMYSKSGSIEAAHKVFLEM-ICRDSITWSAMICGLSHHG 411



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 28/294 (9%)

Query: 16  VLKACAGIGDLNLGKSVHG-AVLKFQFGDDIHVQ-NTLVHMYGSCEGGIELGRKVFDEMS 73
           +LK  A   +L  GK +H   ++  Q   D  VQ N+L+++Y  C+  I + R +FD M 
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQ-IMVARILFDGMR 89

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
           +R+ VSW A++ GY   GL  + + LF+ M  +  + P+E    T++S+C+D G +  G 
Sbjct: 90  KRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGW 149

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
               +  K  +     + NALI M+++  DV  A+ ++  + G  + S+  +I GL  +G
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGREYFDSMKN 241
              EA+ + + M++  +  D+V +V     CS           HC +   G EY DS  +
Sbjct: 210 YPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY-DSFVS 268

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                        ++DM  + G +  A +   ++  + N + W  +++A    G
Sbjct: 269 S-----------AIIDMYGKCGNILNARKVFNRLQTK-NVVSWTAILAAYSQNG 310



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 116 VTVLSACTDLGALEVGKWVES--FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           + +L    D   L+ GK + +   I  Q    ++   N+LI+++AKC  +  A  LF  M
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKG 232
             R +VSW +++AG   +G  LE + LF+ M+    + P++  F  ++S+CS  G V +G
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 233 RE 234
            +
Sbjct: 149 WQ 150


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/475 (42%), Positives = 292/475 (61%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+PN +T+  VL AC   G L    ++H + +K     D+ V+++L+  Y    G
Sbjct: 173 MWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKL-G 228

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ GR+VFDEM  RD V W+++I G+A+ G    AI+LF +M+ +G   ++ T+ +VL 
Sbjct: 229 DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLR 288

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT +  LE G+ V + + K    R + L NAL+DM+ KCG ++ A  LF  M  R ++S
Sbjct: 289 ACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVIS 346

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+GLA +G+  EA+ +F+ M   GV P+ +  VG+L ACSH GLV+ G  YF SMK
Sbjct: 347 WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMK 406

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P+ EH+ CMVD+L R+G++ EA EFI+ M +E + +IWRTL+ AC       LA
Sbjct: 407 KLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + ++  EP  +   VLLS+ YA L +W    K  + M  RGMKK PG + IEL+  
Sbjct: 467 AYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKH 526

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GD SH  S  I + L+ +  ++   GYVP T  VL D+  E KED L  HSEK+
Sbjct: 527 VHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKM 586

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF  +    G PIRI+KNLR+C DCH+  K +SK   R I++RD  RFHHF+D
Sbjct: 587 AIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQD 641



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 13/264 (4%)

Query: 42  GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLF 100
           G  I V N+LV MY    G ++   ++FD M ER+ V+W+ ++   A   G   +A+   
Sbjct: 112 GGGIFVSNSLVSMYAKF-GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFL 170

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
             M   GV P+  T  +VL AC   G L     + +   K  ++  V + ++LID + K 
Sbjct: 171 VAMWRDGVAPNAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKL 227

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           GD+D   ++F  M  R +V W S+IAG A  G G+ A+ LF  M +AG   +      +L
Sbjct: 228 GDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVL 287

Query: 221 SACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
            AC+   +++ GR+ +   +K +  +I     +  ++DM C+ G +++A     +MP + 
Sbjct: 288 RACTGMVMLEAGRQVHAHVLKYERDLIL----HNALLDMYCKCGSLEDAEALFHRMP-QR 342

Query: 280 NPIIWRTLISACCARGELKLAESI 303
           + I W T+IS     G  K AE++
Sbjct: 343 DVISWSTMISGLAQNG--KSAEAL 364



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 14/195 (7%)

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVG------LCNALIDMFAKCGD 162
           D +++  ++  C   G    G+ +   +E   Q+ + S G      + N+L+ M+AK G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLA-MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           +D AL+LF  M  R +V+WT+V+A LA   GR  EA+     M   GV P+   F  +L 
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
           AC   G++        +     G+   +     ++D   + G +        +M +  + 
Sbjct: 191 ACGTPGVL----AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEM-VTRDL 245

Query: 282 IIWRTLISACCARGE 296
           ++W ++I+     G+
Sbjct: 246 VVWNSIIAGFAQSGD 260


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 291/475 (61%), Gaps = 3/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G  P + T   VL ACA +GDL  G  VH  + K +   ++ V N+L+ MY  C+ 
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F+ + E+ +V+W+AMI GYA+ G   +A++LF  MQ  G+  D  T+V V++
Sbjct: 398 -VDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D       KW+     +  ++ +V +  AL+DM+AKCG +  A KLF  M  R +++
Sbjct: 456 ALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT 515

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G E + LF EM +  V P+D+ F+ ++SACSH G V++G   F SM+
Sbjct: 516 WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ 575

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ + P ++HY  MVD+L R+G++ +A  FIQ+MPI+    +   ++ AC     ++L 
Sbjct: 576 EDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELG 635

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++L   +P     +VLL++IYA    W+K  K+R  M+ +G+ K PG + +EL NE
Sbjct: 636 EKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNE 695

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G  +H +SK+IY  L+ +G ++K AGYVP    +  D+ E+ K+  L+ HSE+L
Sbjct: 696 IHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERL 754

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF LL T PGT + I KNLRVC DCH  TK+IS +  REI+VRD  RFHHFK+
Sbjct: 755 AIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKN 809



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 149/291 (51%), Gaps = 10/291 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L+ C    DL  G+ +HG ++   F  ++ V   ++ +Y  C   I+   K+F+ M
Sbjct: 148 YACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQ-IDNAYKMFERM 206

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
             +D VSW+ ++ GYA+ G +  A+ L  QMQ +G  PD +T+V++L A  D+ AL +G+
Sbjct: 207 QHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGR 266

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +  +  +      V + NAL+DM+ KCG    A  +F+ M  +T+VSW ++I G A +G
Sbjct: 267 SIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNG 326

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYFDSMKNDFGIIPKI 249
              EA A F +ML+ G  P  V  +G+L AC++ G +++G    +  D +K D      +
Sbjct: 327 ESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLD----SNV 382

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                ++ M  +  RV  A      +  E   + W  +I      G +K A
Sbjct: 383 SVMNSLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMILGYAQNGCVKEA 431



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 4/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G  P+  T   +L A A +  L +G+S+HG   +  F   ++V N L+ MY  C G
Sbjct: 237 MQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKC-G 295

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
              + R VF  M  +  VSW+ MI G A+ G S +A   F +M   G  P  +TM+ VL 
Sbjct: 296 SARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLL 355

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +LG LE G +V   ++K  ++ +V + N+LI M++KC  VD A  +F ++  +T V+
Sbjct: 356 ACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLE-KTNVT 414

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G A +G   EA+ LF  M   G+  D    VG+++A +    V++  ++   + 
Sbjct: 415 WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQAKWIHGLA 473

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               +   +     +VDM  + G +K A +    M  E + I W  +I      G
Sbjct: 474 VRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTHG 527



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 125/267 (46%), Gaps = 15/267 (5%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           ++K  F ++   Q  ++ ++       E  R VF+ +  +  V +  M+ GYA+     D
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAAR-VFEHVELKLDVLYHIMLKGYAKNSSLGD 128

Query: 96  AIDLFRQMQISGVCPDEITMVT-----VLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           A+  F +M    +C DE+ +V      +L  C +   L+ G+ +   I       ++ + 
Sbjct: 129 ALCFFLRM----MC-DEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVM 183

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
            A++ ++AKC  +D A K+F  M  + +VSWT+++AG A +G    A+ L  +M EAG  
Sbjct: 184 TAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQK 243

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
           PD V  V +L A +    +  GR     + ++ F  +  + +   ++DM  + G  + A 
Sbjct: 244 PDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTN--ALLDMYFKCGSARIAR 301

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
              + M      + W T+I  C   GE
Sbjct: 302 LVFKGMR-SKTVVSWNTMIDGCAQNGE 327


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/504 (39%), Positives = 296/504 (58%), Gaps = 34/504 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ F +  +++AC+ +G L LGK VH   +   F DD  V+++L+ MY  C G  + 
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKC-GQPDD 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP---- 110
            R VFD +  ++SVSW++MI GYAR G   +A+DLF Q            ISG+      
Sbjct: 159 ARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHG 218

Query: 111 ------------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D + + +V+  C +L  LE+GK +   +        + + NA
Sbjct: 219 IYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNA 278

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKC D+  A  +F  M  + ++SWTS+I G A HG+  EA+ L++EM+ + + P+
Sbjct: 279 LVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPN 338

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGLL ACSH GLV +GRE F SM  D+ I P ++HY C++D+L RSG + EA   +
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLL 398

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
            K+P + +   W +L+SAC     L++   I  R++  +P   S Y+LLS++YA    W 
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWG 458

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK-EIYEMLDEMGRKMKKA 391
             +K+R++M    ++K PG + I+   +   F  G+   H  K EI  +L ++  +M+K 
Sbjct: 459 SVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKR 518

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP TS VL DI +++KE  L  HSE+LA+A+ LLK  PGT IRIVKNLR+C DCH+  
Sbjct: 519 GYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVL 578

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           KFIS I  REI+VRD  R+HHFK+
Sbjct: 579 KFISDIVKREIMVRDATRYHHFKE 602



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 65/345 (18%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ CA     +    +H  ++K  F     + NTL+ +YG C G I    ++FDEM  RD
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKC-GLIPQALQLFDEMPNRD 68

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            VSW++++  + +  +    + +   M    G+ PD      ++ AC+ LG L +GK V 
Sbjct: 69  HVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVH 128

Query: 136 S------FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           +      F + ++V  S      LIDM+ KCG  D A  +F S+  +  VSWTS+I+G A
Sbjct: 129 ARFMLSFFCDDEVVKSS------LIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYA 182

Query: 190 MHGRGLEAV-------------------------------ALFEEMLEAGVP-PDDVAFV 217
             GR  EA+                               +LF EM   G+   D +   
Sbjct: 183 RSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLS 242

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEF 271
            ++  C++  L++ G++         G++  +    C      +VDM  +   +  A + 
Sbjct: 243 SVVGGCANLALLELGKQI-------HGLVIALGFESCLFISNALVDMYAKCSDILAAKDI 295

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLA-----ESITKRLIGNE 311
             +MP   + I W ++I      G+ + A     E +  R+  NE
Sbjct: 296 FYRMP-RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNE 339


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/505 (39%), Positives = 299/505 (59%), Gaps = 37/505 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G    K T+  +L AC+ +  L  G+ VH  +L+     ++ V   LV+MY  C G +E 
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKC-GSLEE 361

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDA---------------------------- 96
            RKVF+ M  RD+V+WS +IG YA  G   DA                            
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQN 421

Query: 97  ------IDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                 + +FR+M   +G+ PD +T + VL AC  LG L   K + + I +  +  +V +
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            N LI+M+A+CG +++A +LF +   +T+VSWT+++A  + +GR  EA+ LF+EM   GV
Sbjct: 482 TNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PDDV +  +L  C+H G +++G  YF  M     + P  +H+  MVD+L RSGR+ +A 
Sbjct: 542 KPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAK 601

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           E ++ MP E +P+ W T ++AC   G+L+L E+  +R+   +P   + Y+ +S+IYA   
Sbjct: 602 ELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            WEK   +R+ M++RG+KK+PG + IE+D +++EF  G K H ++ EI E L  +   M+
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMR 721

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP-PGTPIRIVKNLRVCNDCH 448
            AGYVP T  VL D++E +KE  L  HSEK+AIAF L+ +   G PIR+VKNLRVC+DCH
Sbjct: 722 AAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCH 781

Query: 449 SATKFISKIYNREIVVRDRHRFHHF 473
           +ATKFI++I  R+I+VRD +RFH F
Sbjct: 782 TATKFIARIAGRDIIVRDCNRFHRF 806



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 173/345 (50%), Gaps = 8/345 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN  TY  V+   +    L  G+ +H  ++   F  D+ V   L++MYG C G     
Sbjct: 203 VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKC-GSSHEA 261

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R+VFD+M +RD VSW+ MIG Y   G   +A++L++++ + G    + T V++L AC+ +
Sbjct: 262 REVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL  G+ V S I ++ ++  V +  AL++M+AKCG +++A K+F +M  R  V+W+++I
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
              A +G G +A    +     G   D +++  +++     G      + F  M    G+
Sbjct: 382 GAYASNGYGKDARKARKVFDRLG-SRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGL 440

Query: 246 IPKIEHYGCMVDMLCRSGR---VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            P    +  +++     GR   VK  H  I +  +E+N ++  TLI+     G L+ AE 
Sbjct: 441 KPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAER 500

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +       +     ++  +   +++  R+ +   + + MD  G+K
Sbjct: 501 L---FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVK 542



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T+  VL +C+  GD+  G+++H  +   +F  D  V N L+ MYG C+  ++  R 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD-ARS 63

Query: 68  VFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF+ M   +R+ VSW+AMI  YA+ G ST+A+ L+ +M + G+  D +T V+VL AC+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                G+ + + +    ++    L NAL+ M+A+ G V  A ++F+S+  R   SW +VI
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
              +  G    A+ +F+EM +  V P+   ++ ++S  S   ++ +GR+    +  + G 
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GF 238

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     +++M  + G   EA E   KM  + + + W  +I      G+   A  + +
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 306 RL 307
           +L
Sbjct: 298 KL 299


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 292/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G SPN+FT   V+KA A       G  +HG  +K  F  ++HV + L+ +Y +  G
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY-TRYG 210

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VFD +  R+ VSW+A+I G+AR   +  A++LF+ M   G  P   +  ++  
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G LE GKWV +++ K          N L+DM+AK G +  A K+F  +  R +VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A HG G EAV  FEEM   G+ P++++F+ +L+ACSH GL+D+G  Y++ MK
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+P+  HY  +VD+L R+G +  A  FI++MPIE    IW+ L++AC      +L 
Sbjct: 391 KD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + +   +P     +V+L +IYA   RW    ++R+ M + G+KK P  + +E++N 
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENA 509

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV  D+ H Q +EI    +E+  K+K+ GYVP TS V++ ++++++E  L  HSEK+
Sbjct: 510 IHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKI 569

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL TPPG+ I I KN+RVC DCH+A K  SK+  REI+VRD +RFHHFKD
Sbjct: 570 ALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 3/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  ++  Y  +LK C     L  G+ VH  +L+  F  DI + NTL++MY  C G +E  
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-GSLEEA 114

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVF++M +RD V+W+ +I GY++     DA+  F QM   G  P+E T+ +V+ A    
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAE 174

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                G  +  F  K   + +V + +AL+D++ + G +D A  +F ++  R  VSW ++I
Sbjct: 175 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 234

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG A      +A+ LF+ ML  G  P   ++  L  ACS  G +++G+     M      
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +        ++DM  +SG + +A +   ++  + + + W +L++A    G
Sbjct: 295 LVAFAG-NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHG 342



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 30/277 (10%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T+L  CT    L  G+ V + I + +    + + N L++M+AKCG +++A K+F  M  R
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-----CGLVDK 231
             V+WT++I+G + H R  +A+  F +ML  G  P++     ++ A +      CG    
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 232 G---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           G   +  FDS          +     ++D+  R G + +A      +    N + W  LI
Sbjct: 185 GFCVKCGFDS---------NVHVGSALLDLYTRYGLMDDAQLVFDALE-SRNDVSWNALI 234

Query: 289 SACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           +    R   + A  + + ++  G  P H S Y  L    +     E+   +   M K G 
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFS-YASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 347 KKI--PGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           K +   G+TL+++            S H +++I++ L
Sbjct: 294 KLVAFAGNTLLDM-------YAKSGSIHDARKIFDRL 323


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 296/471 (62%), Gaps = 2/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ F     L A AG   L  GKSVHG  ++    + + V N L+ MY  C G +E 
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKC-GYMEE 239

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FD ++++D++SW+ +IGGY+R  L+ +A  LF +M +  + P+ +TM  +L A   
Sbjct: 240 ARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAAS 298

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G+ + ++  ++       + NAL+DM+ KCG +  A +LF  +  + ++SWT +
Sbjct: 299 LSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIM 358

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG  MHGRG +A+ALFE+M  +G+ PD  +F  +L ACSH GL D+G  +F++M+N+  
Sbjct: 359 IAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHR 418

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I PK++HY CMVD+LC +G +KEA+EFI+ MPIE +  IW +L+  C     +KLAE + 
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + +   EP +   YVLL++IYA+  RWE   K++  +  RG+++  G + IE+  + + F
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              +++H Q   I E LD++ R+M++ G+ P     L+  ++   ++AL  HS KLA+AF
Sbjct: 539 FAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAF 598

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            +L    G PIR+ KN RVC+ CH A KFISK+  REI++RD +RFHHF++
Sbjct: 599 GVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEE 649



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 5/261 (1%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G  VHG ++K+ FG    V N L+  Y      IE    VFDEM +RD +SW+++IGG A
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAK-SNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             GL   A++LF +M + G   D  T+++V+ AC       +G  V  +  +  +     
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L NAL+DM++ C D     K+FR+M  + +VSWT++I      G   +   LF+EM   G
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           + PD  A    L A +    +  G+     +++N  GI   +     +++M  + G ++E
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN--GIEEVLPVANALMEMYVKCGYMEE 239

Query: 268 AHEFIQKMPIEANPIIWRTLI 288
           A  FI     + + I W TLI
Sbjct: 240 A-RFIFDHVTKKDTISWNTLI 259



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 4/295 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           V+ AC       +G  VHG  ++     +  + N L+ MY +C        K+F  M ++
Sbjct: 91  VMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSD-WRSTNKIFRNMEQK 149

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW+AMI  Y R G       LF++M + G+ PD   + + L A     +L+ GK V 
Sbjct: 150 NVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVH 209

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            +  +  +   + + NAL++M+ KCG +++A  +F  +  +  +SW ++I G +      
Sbjct: 210 GYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLAN 269

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA  LF EML   + P+ V    +L A +    +++GRE   +     G +        +
Sbjct: 270 EAFTLFNEML-LQLRPNAVTMACILPAAASLSSLERGRE-MHAYAVRRGYLEDNFVANAL 327

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           VDM  + G +  A      M    N I W  +I+     G  + A ++ +++ G+
Sbjct: 328 VDMYVKCGALLLARRLFD-MLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGS 381


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/479 (41%), Positives = 282/479 (58%), Gaps = 31/479 (6%)

Query: 19  ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-------------------- 58
           A   I    +G  VH   +K     D++V+N  +H YG C                    
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200

Query: 59  -----------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
                       G + + R+VFD M  RD VSWS +IGGY + G    A+ +F+ M   G
Sbjct: 201 TWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG 260

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V  +E  +VT LSA   LG LE GK+V   +++  +  SV L  ALIDM++KCG V  A 
Sbjct: 261 VKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAK 320

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           ++F +M  R + +W S+I GLA HG G +AV LFE+ +  G  P  + FVG+L+ACS  G
Sbjct: 321 EVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTG 380

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           LVD+GR YF  M   + I  ++EHYGCMVD+L R+G V+EA E I+ M I  +P++W T+
Sbjct: 381 LVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTI 440

Query: 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +SAC   G + L  ++  +LI  +P H+  YVLL+ IYAK  +W++  K+R++M  RG  
Sbjct: 441 LSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTS 500

Query: 348 KIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE 407
           K  G +L+E    +++F+ GD +H  S  IY ML  + R++ +AGYVP  S VL DI +E
Sbjct: 501 KSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDE 560

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           +K  A+  HSE+LAIA+  +    G+PIRIVKNL VC DCH  +K ++K++ REIVVRD
Sbjct: 561 EKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRD 619


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/476 (39%), Positives = 297/476 (62%), Gaps = 1/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ PN+ T+  +L        L     +H  + +    D   + N LV++YG CE 
Sbjct: 203 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCET 262

Query: 61  G-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +++   +  EM E+   +W+ +I GY   G S +A++ ++++Q+  +  D++T ++VL
Sbjct: 263 GELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVL 322

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT   +L  GK + S   +  ++  V + NAL +M++KCG ++ A ++F SM  R+ V
Sbjct: 323 NACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAV 382

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW  ++   A HG   E + L  +M + GV  + + FV +LS+CSH GL+ +G +YF S+
Sbjct: 383 SWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSL 442

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            +D GI  K EHYGC+VD+L R+G+++EA ++I KMP E   + W +L+ AC    +L  
Sbjct: 443 GHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDR 502

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   ++L+  +P + S  V+LS+IY++   W+   K+R  M  R +KK+PG + I++ N
Sbjct: 503 GKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKN 562

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++EF   D SH ++ EIY+ ++E+   M++AGYVP T  VL D++EE KE  L  HSEK
Sbjct: 563 KVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEK 622

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TP  + + I KNLRVC DCH+ATKFISKI  REIVVRD HRFHHF+D
Sbjct: 623 LAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRD 678



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 193/430 (44%), Gaps = 57/430 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV  N  T+  VL +      L  GK +H  V + +   D+ V   LV+ Y  C G
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKC-G 59

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD M  R   +W++MI  Y+    S +A  +F++MQ  G   D +T +++L 
Sbjct: 60  SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILD 119

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +   L+ GK V   I +      + +  ALI M+A+C   + A ++F  M  + +++
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLV 229
           W+++I   A HG   EA+  F  M + G+ P+ V F+ LL+  +           H  + 
Sbjct: 180 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 230 DKGREYFDSMKNDFGII---------------------PKIEHYGCMVDMLCRSGRVKEA 268
           + G +   +M N    +                      +I  +  +++     GR +EA
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREA 299

Query: 269 HEFIQKMPIEANPIIWRTLIS---ACCARGELKLAESITKRLIGNEPMHESNYVL---LS 322
            E  Q++ +EA P+   T IS   AC +   L   + I    +  E   +S+ ++   L+
Sbjct: 300 LETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV--ECGLDSDVIVKNALT 357

Query: 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382
           ++Y+K    E   +I + M        P  + +  +  +  +      H +S+E+ +++ 
Sbjct: 358 NMYSKCGSMENARRIFDSM--------PIRSAVSWNGMLQAYA----QHGESEEVLKLI- 404

Query: 383 EMGRKMKKAG 392
              RKM++ G
Sbjct: 405 ---RKMEQEG 411


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/474 (43%), Positives = 300/474 (63%), Gaps = 2/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++YGV P+ FTYP  LKACA + DL  G+ VH  VL   +G+D+ V   LV MY  C G
Sbjct: 154 MVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKC-G 212

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD +  RDSV W++MI  Y + G   +A+ L R M  +GV P   T+V+ +S
Sbjct: 213 CVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTIS 272

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D  AL  G+ +  F  ++  +R   L  +L+DM+AK G V  A  LF  +  R +VS
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVS 332

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W ++I G  MHG   EA+ LF +M +EA V PD++ FVG+LSAC+H G+V + +E+F  M
Sbjct: 333 WNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLM 392

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            + + I P ++H+ C+VD+L  +GR +EA++ I+ MP++ +  IW  L++ C     ++L
Sbjct: 393 VDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVEL 452

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   ++LI  EP    NYVLLS+IYA+  +WEK  ++R++M  RG+KKI G + IEL  
Sbjct: 453 GELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKG 512

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + + F+ GD SH +S EIYE L+ +   M  AGY+P T  V  D+ +++K + +  HSE+
Sbjct: 513 KTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSER 572

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LAIAF L+ TP GT + + KNLRVC DCH   K IS+I  REI++RD +R+HHF
Sbjct: 573 LAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHF 626



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 7   SPNKFT-YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           SPN +  Y  VL++C     L  G+ +HG +L    G D  +   LV +Y +C G +   
Sbjct: 58  SPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAAC-GLVGHA 116

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R++FD M +R+   W+ +I  YAR G    AI L+R M   GV PD  T    L AC  L
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             LE G+ V   +        + +C  L+DM+AKCG VD A  +F  +  R  V W S+I
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFG 244
           A    +GR +EA++L  +M   GV P     V  +SA +    + +GRE      +  F 
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFD 296

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
              K++    +VDM  +SG V+ A    +++ ++   + W  +I      G    A  + 
Sbjct: 297 RQDKLK--TSLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHFDEALKLF 353

Query: 305 KRL 307
            ++
Sbjct: 354 NKM 356


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/474 (42%), Positives = 297/474 (62%), Gaps = 2/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E+GV P+ FTYP VLKACA + DL  G+ VH  V   ++G D+ V   +V MY  C G
Sbjct: 154 MVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKC-G 212

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD ++ RD+V W++MI  Y + G   +A+ L R M  +G+ P   T+V+ +S
Sbjct: 213 CVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVS 272

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D  AL  G+ +  F  ++       L  +L+DM+AK G V  A  LF  +  R +VS
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVS 332

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W ++I G  MHG   EA+ALF +M  +A V PD++ FVG+LSAC+H G+V++ +E+F  M
Sbjct: 333 WNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLM 392

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            N + I P ++HY C++D+L  +GR +EA++ I+ M IE +  IW  L++ C     ++L
Sbjct: 393 VNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVEL 452

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   ++LI  EP    NYV LS+IYA+  +WEK  ++R++M  RG+KKI   + IEL  
Sbjct: 453 GELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKG 512

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + + F+ GD SH +S EIY  L+ +   M  AGYVP    V  ++++++K + +  HSE+
Sbjct: 513 KTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSER 572

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LAIAF L+ TPPGT + + KNLRVC DCH   K IS+I  REI++RD +R+HHF
Sbjct: 573 LAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHF 626



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 6/322 (1%)

Query: 7   SPNKFTY-PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           SP+ + +   +L++C   G L  G+ +HG +L    G D  +   LV +Y +C G +   
Sbjct: 58  SPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAAC-GQVGHA 116

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R++FD M +R+   W+ +I  YAR G    A+ L+R M   GV PD  T   VL AC  L
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAAL 176

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             LE G+ V   +      + V +C  ++DM+AKCG VD A  +F  +  R  V W S+I
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMI 236

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFG 244
           A    +GR +EA+AL  +M   G+ P     V  +SA +    + +GRE      +  FG
Sbjct: 237 AAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFG 296

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           +  K++    +VDM  +SG V+ A    +++ ++   + W  +I      G    A ++ 
Sbjct: 297 LQDKLK--TSLVDMYAKSGWVQVARVLFEQL-MKRELVSWNAMICGYGMHGHADEALALF 353

Query: 305 KRLIGNEPMHESNYVLLSHIYA 326
            ++ G+  +   N   +  + A
Sbjct: 354 NKMKGDAQVTPDNITFVGVLSA 375


>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
 gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
          Length = 502

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/485 (41%), Positives = 295/485 (60%), Gaps = 11/485 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+ FT    L +C+ +     G  +H    +  +G ++ VQN LV+ Y  C  
Sbjct: 10  MQSHGLFPSDFTISVALSSCSSLKSFERGARIHRWADEHGYGSNLLVQNALVNFYAKC-S 68

Query: 61  GIELGRKVFDEMSERDS---VSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMV 116
            I    K+F EMSER S   VSWSAMIG YA  G   +A+ LF +M+  G V P+ +T  
Sbjct: 69  KIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNAMTFT 128

Query: 117 TVLSACTDLGALEVGKWVESFI--EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
            V +AC  +  LE G+ + +      ++ + S  L NAL++MF + G +++A K+F +M+
Sbjct: 129 GVFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEARKVFDAMD 188

Query: 175 G----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
                   VSWT++IA LA HG+G EA+ LF+EM   G+  D   F+ +L ACSH GL+ 
Sbjct: 189 HPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIK 248

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  E+F SM  D+ I P   HY   +D + R+GR+++A E I  MP     + W+TL++A
Sbjct: 249 ESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNA 308

Query: 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350
           C    + + A  + + L    P     Y LL ++YA   R+  + ++R+ M  RG+KK+P
Sbjct: 309 CRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKKVP 368

Query: 351 GSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKE 410
             + IE+ N+++EFV GD++H    EI   L+++G +M++AGYVP T +VL  +NEE+KE
Sbjct: 369 RKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKE 428

Query: 411 DALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRF 470
             +  HSEKLAIAF L+ TPPGTP+ IVKNLRVC+DCH+ATK I+KI  R IVVRD HRF
Sbjct: 429 QLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRF 488

Query: 471 HHFKD 475
           HH +D
Sbjct: 489 HHLED 493



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 114/209 (54%), Gaps = 14/209 (6%)

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           L+  MQ  G+ P + T+   LS+C+ L + E G  +  + ++     ++ + NAL++ +A
Sbjct: 6   LYDSMQSHGLFPSDFTISVALSSCSSLKSFERGARIHRWADEHGYGSNLLVQNALVNFYA 65

Query: 159 KCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDV 214
           KC  + +A+KLF  M+    RT+VSW+++I   A+HGRG EA+ LF  M + G V P+ +
Sbjct: 66  KCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNAM 125

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGII----PKIEHYGCMVDMLCRSGRVKEAHE 270
            F G+ +AC     +++GRE   ++    G +    P +E+   +++M  R G ++EA +
Sbjct: 126 TFTGVFNACGVVEDLEQGRE-IHALAMASGELKSSSPILEN--ALLNMFVRFGSLEEARK 182

Query: 271 FIQKMPIE---ANPIIWRTLISACCARGE 296
               M      +N + W  +I+A    G+
Sbjct: 183 VFDAMDHPDAFSNSVSWTAMIAALAQHGQ 211


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/459 (43%), Positives = 290/459 (63%), Gaps = 1/459 (0%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ACA +  L +G+ +H  + K     D+   N+L+ MY    G I+    +FDEM+ +D
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVKD 290

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           +VS+SA++ GY + G + +A  +F++MQ   V PD  TMV+++ AC+ L AL+ G+    
Sbjct: 291 TVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            +  + +     +CNALIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G E
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 410

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A ALF EM   G PPD V F+ LLSACSH GLV +G+ +F  M + +G+ P++EHY CMV
Sbjct: 411 ATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMV 470

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R G + EA+EFIQ MP+ A+  +W  L+ AC     + L + +++ +    P    
Sbjct: 471 DLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTG 530

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           N+VLLS+IY+   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH QS E
Sbjct: 531 NFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPE 590

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIR 436
           IY  LD +   +KK GY P TS VL D+ EE+KE AL  HSEKLAIA+ +L       I 
Sbjct: 591 IYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIF 650

Query: 437 IVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + KNLRVC DCH+  K IS +  R I+VRD +RFHHFK+
Sbjct: 651 VTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKN 689



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 14/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL----------KFQFGDDIHVQNT 50
           M  + + PN  T   +L   A  G L  G SVH   +          K +  D + +   
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC- 109
           L+ MY  C G +   R+VFD M  R+ V+WSA+IGG+      T A  LF+ M   G+C 
Sbjct: 164 LLDMYAKC-GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
               ++ + L AC  L  L +G+ + + + K  V+  +   N+L+ M+AK G +D+A+ L
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  +  VS++++++G   +GR  EA  +F++M    V PD    V L+ ACSH   +
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR    S+    G+  +      ++DM  + GR+  + +    MP   + + W T+I+
Sbjct: 343 QHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIA 400



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 172/396 (43%), Gaps = 58/396 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PN +T+PF LKAC+ + D + G+++H   +      D+ V   L+ MY  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKC-A 59

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID--LFRQMQISGVCPDEITMVTV 118
            +     +F  M  RD V+W+AM+ GYA  G+   A+   L  QMQ+  + P+  T+V +
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 119 LSACTDLGALEVGKWVESFI----------EKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
           L      GAL  G  V ++            K  +   V L  AL+DM+AKCG +  A +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML----------------------- 205
           +F +M  R  V+W+++I G  +  R  +A  LF+ ML                       
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 239

Query: 206 -------------EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
                        ++GV  D  A   LLS  +  GL+D+    FD M      +     Y
Sbjct: 240 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-----VKDTVSY 294

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESITKRLIG 309
             +V    ++GR +EA    +KM    +E +     +LI AC     L+        +I 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 310 NEPMHESNYV-LLSHIYAKLLRWEKKTKIREVMDKR 344
                E++    L  +YAK  R +   ++  +M  R
Sbjct: 355 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/475 (41%), Positives = 289/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV P   T+  VL ACA   + NLG  VHG V+K        +  +L+  Y +C  
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   K+F+E   ++ V W+A++  Y       DA+ +F  M   G  P++ T    L 
Sbjct: 253 -IEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLK 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L AL+ GK + +   K  +   V + N+L+ M+ +CG+V+ A+ +FR++N + IVS
Sbjct: 312 ACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS 371

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I G A HG GL A+  F +M+  GV P+++ F GLLSACS  G++ KGR +F+ + 
Sbjct: 372 WNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYIS 431

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                + + +HY CMVD+L R G++ EA E ++ MP++AN +IW  L+SAC     L++A
Sbjct: 432 RYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVA 491

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K ++  EP   S YVLLS+IYA   RW   +++R  M + G+ K PGS+ + L  +
Sbjct: 492 ERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGK 551

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            +EF+  D+SH  S+ IYE LD +G+K+K+ GYVP     L D+ +E KE+ L+ HSE+L
Sbjct: 552 KHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERL 611

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ T  G+ I ++KNLRVC DCHS  K +SKI  R+IVVRD  RFHHFK+
Sbjct: 612 AIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKN 666



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 7/254 (2%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   N +VH Y    G +E G ++F+EM  RD +SW++MIGG    G S +A+ +F++M
Sbjct: 135 DVAAWNAMVHGYFE-NGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKM 193

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
             SGV P   T   VLSAC +     +G  V   + K        +  +LI  +A C  +
Sbjct: 194 LRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKI 253

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A K+F     + +V WT+++     + +  +A+ +F +M + G  P+   F   L AC
Sbjct: 254 EHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKAC 313

Query: 224 SHCGL--VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
             CGL  +DKG+E   +M    G+   +     +V M    G V  A    + +  E + 
Sbjct: 314 --CGLEALDKGKE-IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDI 369

Query: 282 IIWRTLISACCARG 295
           + W ++I      G
Sbjct: 370 VSWNSIIVGSAQHG 383



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 24/231 (10%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+FD MS RD VSW++MI G    G    A  LF +M    V    I+  T+++     G
Sbjct: 64  KLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNV----ISWTTMVNGYLKFG 119

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +E+ +    F++  +  + V   NA++  + + G V++ ++LF  M  R ++SWTS+I 
Sbjct: 120 RVELAQ--RLFLDMHV--KDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIG 175

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY------FDSMK 240
           GL ++G+  EA+ +F++ML +GV P    F  +LSAC++    + G +            
Sbjct: 176 GLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFF 235

Query: 241 NDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           ++F  +  I  Y  CM        +++ AH+   +  +  N + W  L++A
Sbjct: 236 HEFISVSLITFYANCM--------KIEHAHKIFNE-TLTKNVVKWTALLTA 277



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
           ALKLF  M+ R +VSW S+I G    G    A  LF+EM E  V    +++  +++    
Sbjct: 62  ALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNV----ISWTTMVNGYLK 117

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
            G V+  +  F  M      +  +  +  MV     +GRV+E     ++MP+  + I W 
Sbjct: 118 FGRVELAQRLFLDMH-----VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVR-DVISWT 171

Query: 286 TLISACCARGELKLAESITKRLI--GNEPMHESNYVLLS 322
           ++I      G+ + A  + K+++  G EP   +   +LS
Sbjct: 172 SMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLS 210


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 299/483 (61%), Gaps = 13/483 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   V+ AC   G  +  +++HG V+K     D  VQNTL+ MY    G I++
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL-GKIDI 458

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-----IS------GVCPDEI 113
             ++F +M +RD V+W+ MI GY       DA+ L  +MQ     +S       + P+ I
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T++T+L +C  L AL  GK + ++  K  +   V + +AL+DM+AKCG +  + K+F  +
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             + +++W  +I    MHG G EA+ L   M+  GV P++V F+ + +ACSH G+VD+G 
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISACC 292
             F  MK D+G+ P  +HY C+VD+L R+GR+KEA++ +  MP + N    W +L+ A  
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
               L++ E   + LI  EP   S+YVLL++IY+    W+K T++R  M ++G++K PG 
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 758

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE  +E+++FV GD SH QS+++   L+ +  +M+K GYVP TS VL ++ E++KE  
Sbjct: 759 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 818

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLAIAF +L T PGT IR+ KNLRVCNDCH ATKFISKI +REI++RD  RFH 
Sbjct: 819 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 878

Query: 473 FKD 475
           FK+
Sbjct: 879 FKN 881



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 13/297 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M+  G+ P+ + +P +LKA A + D+ LGK +H  V KF +G D + V NTLV++Y  C 
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC- 146

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G      KVFD +SER+ VSW+++I           A++ FR M    V P   T+V+V+
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 206

Query: 120 SACTDLG---ALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +AC++L     L +GK V ++ + K  +N  +   N L+ M+ K G +  +  L  S  G
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
           R +V+W +V++ L  + + LEA+    EM+  GV PD+     +L ACSH  ++  G+E 
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 235 YFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  ++KN  G + +    G  +VDM C   +V         M  +    +W  +I+ 
Sbjct: 325 HAYALKN--GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 18/304 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
           M+  GV P++FT   VL AC+ +  L  GK +H   LK     ++  V + LV MY +C+
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
             +  GR+VFD M +R    W+AMI GY++     +A+ LF  M+ S G+  +  TM  V
Sbjct: 353 QVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC   GA    + +  F+ K+ ++R   + N L+DM+++ G +D A+++F  M  R +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVP---------PDDVAFVGLLSACSHCG 227
           V+W ++I G        +A+ L  +M  LE  V          P+ +  + +L +C+   
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 228 LVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
            + KG+E +  ++KN+      +     +VDM  + G ++ + +   ++P + N I W  
Sbjct: 532 ALAKGKEIHAYAIKNNLAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNV 588

Query: 287 LISA 290
           +I A
Sbjct: 589 IIMA 592



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 36/276 (13%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W  ++    R  L  +A+  +  M + G+ PD      +L A  DL  +E+GK + + + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 140 KQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
           K      SV + N L++++ KCGD     K+F  ++ R  VSW S+I+ L    +   A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMK----NDFGIIPKIE 250
             F  ML+  V P     V +++ACS+     GL+   + +   ++    N F I   + 
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 251 HYG------------------------CMVDMLCRSGRVKEAHEFIQKM---PIEANPII 283
            YG                         ++  LC++ ++ EA E++++M    +E +   
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
             +++ AC     L+  + +    + N  + E+++V
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC 254
           EAV  + +M+  G+ PD+ AF  LL A +    ++ G++ +    K  +G +  +     
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG-VDSVTVANT 138

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +V++  + G     ++   ++  E N + W +LIS+ C+  + ++A    + ++ +E + 
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DENVE 196

Query: 315 ESNYVLLSHIYA 326
            S++ L+S + A
Sbjct: 197 PSSFTLVSVVTA 208


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/502 (40%), Positives = 304/502 (60%), Gaps = 44/502 (8%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------------------ 58
           L AC+ +GD NL   +H  V+KF F     V N ++  Y  C                  
Sbjct: 120 LGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSV 179

Query: 59  -------EG-----GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
                  EG     G+E G+ VFDEM ER+ V+W+ +I GY   G + +A  L ++M   
Sbjct: 180 VSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFG 239

Query: 107 ---GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGD 162
              G   + IT+ +VLSAC+  G + VG+WV  +  K +  +  V +  +L+DM+AKCG 
Sbjct: 240 CGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGR 299

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +  AL +FR M  R +V+W +++ GLAMHG G   V +F  M+E  V PD V F+ LLS+
Sbjct: 300 ISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALLSS 358

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH GLV++G +YF  ++  +GI P+IEHY CMVD+L R+GR++EA + ++K+PI  N +
Sbjct: 359 CSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEV 418

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           +  +L+ AC A G+L+L E I + L+  +P++   ++LLS++YA   + +K   +R+V+ 
Sbjct: 419 VLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLK 478

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTS-EVL 401
            RG++K+PG + I +D +++ F+ GDKSH ++ +IY  LD+M  K++ AGYVP T+ +VL
Sbjct: 479 NRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVL 538

Query: 402 LDINE--------EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
              +         E+ E  L  HSEKLA+ F L+ TP  +P+ I KNLR+C DCHSA K 
Sbjct: 539 FGCSNGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKI 598

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
            S IY REIVVRDR+RFH FK 
Sbjct: 599 ASDIYKREIVVRDRYRFHSFKQ 620



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 134/322 (41%), Gaps = 52/322 (16%)

Query: 16  VLKACAGIGDLNLGKSVHGA--VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM- 72
           +L+ CA    +  G+ +H A  V    F     + N L+H+Y SC       RK+FD + 
Sbjct: 18  LLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSH-ARKLFDRIP 76

Query: 73  -SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
            S +DSV ++A+I    R     DA+  + QM+   +  D + ++  L AC+ LG   + 
Sbjct: 77  HSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLV 132

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL--- 188
             +   + K    R   + N ++D + KCG V +A ++F  +   ++VSWT V+ G+   
Sbjct: 133 PQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKC 192

Query: 189 --------------------------AMHGRGL--EAVALFEEMLEA---GVPPDDVAFV 217
                                        G G   EA  L +EM+     G   + +   
Sbjct: 193 EGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLC 252

Query: 218 GLLSACSHCGLVDKGR----EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
            +LSACS  G V  GR        ++  D G++        +VDM  + GR+  A    +
Sbjct: 253 SVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTS----LVDMYAKCGRISAALMVFR 308

Query: 274 KMPIEANPIIWRTLISACCARG 295
            MP   N + W  ++      G
Sbjct: 309 HMP-RRNVVAWNAMLCGLAMHG 329



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGI 62
           +G   N  T   VL AC+  GD+++G+ VH   +K    D  + V  +LV MY  C G I
Sbjct: 242 FGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKC-GRI 300

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
                VF  M  R+ V+W+AM+ G A  G+    +++F  M +  V PD +T + +LS+C
Sbjct: 301 SAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACM-VEEVKPDAVTFMALLSSC 359

Query: 123 TDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVS 180
           +  G +E G ++         +   +     ++D+  + G +++A  L + +      V 
Sbjct: 360 SHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVV 419

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDKGREYFDSM 239
             S++     HG+      +  E+++  + P +  +  LLS   + CG  DK       +
Sbjct: 420 LGSLLGACYAHGKLRLGEKIMRELVQ--MDPLNTEYHILLSNMYALCGKADKANSLRKVL 477

Query: 240 KN 241
           KN
Sbjct: 478 KN 479


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 299/483 (61%), Gaps = 13/483 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   V+ AC   G  +  +++HG V+K     D  VQNTL+ MY    G I++
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL-GKIDI 458

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-----IS------GVCPDEI 113
             ++F +M +RD V+W+ MI GY       DA+ L  +MQ     +S       + P+ I
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T++T+L +C  L AL  GK + ++  K  +   V + +AL+DM+AKCG +  + K+F  +
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             + +++W  +I    MHG G EA+ L   M+  GV P++V F+ + +ACSH G+VD+G 
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISACC 292
             F  MK D+G+ P  +HY C+VD+L R+GR+KEA++ +  MP + N    W +L+ A  
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
               L++ E   + LI  EP   S+YVLL++IY+    W+K T++R  M ++G++K PG 
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 758

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE  +E+++FV GD SH QS+++   L+ +  +M+K GYVP TS VL ++ E++KE  
Sbjct: 759 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 818

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLAIAF +L T PGT IR+ KNLRVCNDCH ATKFISKI +REI++RD  RFH 
Sbjct: 819 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 878

Query: 473 FKD 475
           FK+
Sbjct: 879 FKN 881



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 13/297 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M+  G+ P+ + +P +LKA A + D+ LGK +H  V KF +G D + V NTLV++Y  C 
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC- 146

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G      KVFD +SER+ VSW+++I           A++ FR M    V P   T+V+V+
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 206

Query: 120 SACTDLG---ALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +AC++L     L +GK V ++ + K  +N  +   N L+ M+ K G +  +  L  S  G
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
           R +V+W +V++ L  + + LEA+    EM+  GV PD+     +L ACSH  ++  G+E 
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 235 YFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  ++KN  G + +    G  +VDM C   +V         M  +    +W  +I+ 
Sbjct: 325 HAYALKN--GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 18/304 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
           M+  GV P++FT   VL AC+ +  L  GK +H   LK     ++  V + LV MY +C+
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
             +  GR+VFD M +R    W+AMI GY++     +A+ LF  M+ S G+  +  TM  V
Sbjct: 353 QVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC   GA    + +  F+ K+ ++R   + N L+DM+++ G +D A+++F  M  R +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVP---------PDDVAFVGLLSACSHCG 227
           V+W ++I G        +A+ L  +M  LE  V          P+ +  + +L +C+   
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 228 LVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
            + KG+E +  ++KN+      +     +VDM  + G ++ + +   ++P + N I W  
Sbjct: 532 ALAKGKEIHAYAIKNNLAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNV 588

Query: 287 LISA 290
           +I A
Sbjct: 589 IIMA 592



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 36/276 (13%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W  ++    R  L  +A+  +  M + G+ PD      +L A  DL  +E+GK + + + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 140 KQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
           K      SV + N L++++ KCGD     K+F  ++ R  VSW S+I+ L    +   A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMK----NDFGIIPKIE 250
             F  ML+  V P     V +++ACS+     GL+   + +   ++    N F I   + 
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 251 HYG------------------------CMVDMLCRSGRVKEAHEFIQKM---PIEANPII 283
            YG                         ++  LC++ ++ EA E++++M    +E +   
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
             +++ AC     L+  + +    + N  + E+++V
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC 254
           EAV  + +M+  G+ PD+ AF  LL A +    ++ G++ +    K  +G +  +     
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG-VDSVTVANT 138

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +V++  + G     ++   ++  E N + W +LIS+ C+  + ++A    + ++ +E + 
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DENVE 196

Query: 315 ESNYVLLSHIYA 326
            S++ L+S + A
Sbjct: 197 PSSFTLVSVVTA 208


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 292/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G SPN+FT   V+KA A       G  +HG  +K  F  ++HV + L+ +Y +  G
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY-TRYG 210

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VFD +  R+ VSW+A+I G+AR   +  A++LF+ M   G  P   +  ++  
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G LE GKWV +++ K          N L+DM+AK G +  A K+F  +  R +VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A HG G EAV  FEEM   G+ P++++F+ +L+ACSH GL+D+G  Y++ MK
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+P+  HY  +VD+L R+G +  A  FI++MPIE    IW+ L++AC      +L 
Sbjct: 391 KD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + +   +P     +V+L +IYA   RW    ++R+ M + G+KK P  + +E++N 
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENA 509

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV  D+ H Q +EI    +E+  K+K+ GYVP TS V++ ++++++E  L  HSEK+
Sbjct: 510 IHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKI 569

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL TPPG+ I I KN+RVC DCH+A K  SK+  REI+VRD +RFHHFKD
Sbjct: 570 ALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 3/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  ++  Y  +LK C     L  G+ VH  +L+  F  DI + NTL++MY  C G +E  
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-GSLEEA 114

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVF++M +RD V+W+ +I GY++     DA+  F QM   G  P+E T+ +V+ A    
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAE 174

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                G  +  F  K   + +V + +AL+D++ + G +D A  +F ++  R  VSW ++I
Sbjct: 175 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 234

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG A      +A+ LF+ ML  G  P   ++  L  ACS  G +++G+     M      
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +        ++DM  +SG + +A +   ++  + + + W +L++A    G
Sbjct: 295 LVAFAG-NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHG 342



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 30/277 (10%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T+L  CT    L  G+ V + I + +    + + N L++M+AKCG +++A K+F  M  R
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-----CGLVDK 231
             V+WT++I+G + H R  +A+  F +ML  G  P++     ++ A +      CG    
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 232 G---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           G   +  FDS          +     ++D+  R G + +A      +    N + W  LI
Sbjct: 185 GFCVKCGFDS---------NVHVGSALLDLYTRYGLMDDAQLVFDALE-SRNDVSWNALI 234

Query: 289 SACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           +    R   + A  + + ++  G  P H S Y  L    +     E+   +   M K G 
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFS-YASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 347 KKI--PGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           K +   G+TL+++            S H +++I++ L
Sbjct: 294 KLVAFAGNTLLDM-------YAKSGSIHDARKIFDRL 323


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/474 (39%), Positives = 285/474 (60%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P+         ACAGI  +  G  +H  V    +  DI + NTLV++Y  C G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC-G 496

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    +F E+  +D ++W+ +I G+ +  L   A+ +F +M  +G   +  T ++ +S
Sbjct: 497 RSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAIS 556

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L  ++ GK V     K        + NALI ++ KCG ++ A  +F  M+ R  VS
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I   + HGRGLEA+ LF++M + G+ P+DV F+G+L+ACSH GLV++G  YF SM 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +G+ P  +HY C+VD+L R+G++  A  F+ +MPI AN +IWRTL+SAC     +++ 
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIG 736

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K L+  EP   ++YVLLS+ YA   +W  + ++R++M  RG++K PG + IE+ N 
Sbjct: 737 ELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNA 796

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD+ H  S +IY+ L E+  ++ K GY      +  +  +E K+     HSEKL
Sbjct: 797 VHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKL 856

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF L+  PP  P+R++KNLRVC+DCHS  KF S++  REIV+RD +RFHHF 
Sbjct: 857 AVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFN 910



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 153/295 (51%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PNKFTYP +L+ C   G + LG+ +H   +K  F  D++V   L+ MY     
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC 396

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RK+ + + +RD VSW++MI GY +     +A+  F++MQ  GV PD I + +  S
Sbjct: 397 -LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  + A+  G  + + +        + + N L++++A+CG  ++A  LFR ++ +  ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT 515

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G        +A+ +F +M +AG   +   F+  +SA ++   + +G++      
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              G   + E    ++ +  + G +++A     +M +  N + W T+I++C   G
Sbjct: 576 KT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 13/290 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   +L ACA +GDL  GK +H  +LK     D   + +L+ +Y  C G IE 
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC-GDIET 298

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+     + V W+ M+  Y ++     + ++F QMQ +G+ P++ T   +L  CT 
Sbjct: 299 AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTC 358

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G +E+G+ + S   K      + +   LIDM++K   +DKA K+   +  R +VSWTS+
Sbjct: 359 TGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSM 418

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREYFDSM 239
           IAG   H    EA+A F+EM + GV PD++      SAC+       GL    R Y    
Sbjct: 419 IAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY 478

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             D  I      +  +V++  R GR +EA    +++    + I W  LIS
Sbjct: 479 AADISI------WNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLIS 521



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 166/368 (45%), Gaps = 46/368 (12%)

Query: 17  LKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           L+AC G G+   L   +H   +    G D  + N L+ +Y    G +   R+VF E+S R
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAK-NGLVWQARQVFKELSSR 107

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D VSW AM+ GYA+ GL  +A  L+ QM  + V P    + +VLSACT       G+ + 
Sbjct: 108 DHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           + + KQ       + NALI ++   G    A ++F  M     V++ ++I+G A  G G 
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHY 252
            A+ +F+EM  +G+ PD V    LL+AC+  G + KG++   Y       F  I +    
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE---- 283

Query: 253 GCMVDMLCRSGRVKEAHEF----------------------------------IQKMPIE 278
           G ++D+  + G ++ AH+                                   +Q   I 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTK 336
            N   +  ++  C   G+++L E I    I N       YV  +L  +Y+K    +K  K
Sbjct: 344 PNKFTYPCILRTCTCTGQIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYRCLDKARK 402

Query: 337 IREVMDKR 344
           I E+++KR
Sbjct: 403 ILEMLEKR 410



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 144/286 (50%), Gaps = 5/286 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V P  +    VL AC        G+ +H  V K  F  +  V N L+ +Y    G  +L
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF-GSFKL 197

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF +M   D V+++ +I G+A+ G    A+ +F +MQ+SG+ PD +T+ ++L+AC  
Sbjct: 198 AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACAS 257

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +G L+ GK + S++ K  ++       +L+D++ KCGD++ A  +F   +   +V W  +
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDF 243
           +          ++  +F +M   G+ P+   +  +L  C+  G ++ G +    S+KN F
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
                +   G ++DM  +   + +A + ++ +  + + + W ++I+
Sbjct: 378 ESDMYVS--GVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIA 420


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/460 (43%), Positives = 290/460 (63%), Gaps = 1/460 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            L+ACA +  L +G+ +H  + K     D+   N+L+ MY    G I+    +FDEM+ +
Sbjct: 346 ALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVK 404

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D+VS+SA++ GY + G + +A  +F++MQ   V PD  TMV+++ AC+ L AL+ G+   
Sbjct: 405 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             +  + +     +CNALIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G 
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA ALF EM   G PPD V F+ LLSACSH GLV +G+ +F  M + +G+ P++EHY CM
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R G + EA+EFIQ MP+ A+  +W  L+ AC     + L + +++ +    P   
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
            N+VLLS+IY+   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH QS 
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           EIY  LD +   +KK GY P TS VL D+ EE+KE AL  HSEKLAIA+ +L       I
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTI 764

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + KNLRVC DCH+  K IS +  R I+VRD +RFHHFK+
Sbjct: 765 FVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKN 804



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 14/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL----------KFQFGDDIHVQNT 50
           M  + + PN  T   +L   A  G L  G SVH   +          K +  D + +   
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 278

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC- 109
           L+ MY  C G +   R+VFD M  R+ V+WSA+IGG+      T A  LF+ M   G+C 
Sbjct: 279 LLDMYAKC-GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
               ++ + L AC  L  L +G+ + + + K  V+  +   N+L+ M+AK G +D+A+ L
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  +  VS++++++G   +GR  EA  +F++M    V PD    V L+ ACSH   +
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR    S+    G+  +      ++DM  + GR+  + +    MP   + + W T+I+
Sbjct: 458 QHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIA 515



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 174/399 (43%), Gaps = 64/399 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PN +T+PF LKAC+ + D + G+++H   +      D+ V   L+ MY  C  
Sbjct: 116 MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKC-A 174

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID--LFRQMQISGVCPDEITMVTV 118
            +     +F  M  RD V+W+AM+ GYA  G+   A+   L  QMQ+  + P+  T+V +
Sbjct: 175 CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 234

Query: 119 LSACTDLGALEVGKWVESFI----------EKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
           L      GAL  G  V ++            K  +   V L  AL+DM+AKCG +  A +
Sbjct: 235 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 294

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML----------------------- 205
           +F +M  R  V+W+++I G  +  R  +A  LF+ ML                       
Sbjct: 295 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 354

Query: 206 -------------EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
                        ++GV  D  A   LLS  +  GL+D+    FD M      +     Y
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-----VKDTVSY 409

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAE----SITK 305
             +V    ++GR +EA    +KM    +E +     +LI AC     L+       S+  
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           R + +E    S    L  +YAK  R +   ++  +M  R
Sbjct: 470 RGLASE---TSICNALIDMYAKCGRIDLSRQVFNMMPSR 505



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 14/243 (5%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG--LSTDAIDLFRQMQISGVCPDEITMV 116
            G +     +FD++   D  +++ +I  Y+      + D + L+R+M    V P+  T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
             L AC+ L     G+ +        +   + +  AL+DM+ KC  +  A  +F +M  R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 177 TIVSWTSVIAGLAMHGRGLEAVA--LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-- 232
            +V+W +++AG A HG    AVA  L  +M    + P+    V LL   +  G + +G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 233 ------REYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR 285
                 R      +N    +      G  ++DM  + G +  A      MP   N + W 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWS 308

Query: 286 TLI 288
            LI
Sbjct: 309 ALI 311


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 293/471 (62%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  TY  + + CA + D+ LGK VH  +LK     D+++ ++++ MYG C G +  
Sbjct: 219 GIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKC-GNVLS 277

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR  FD +  R+ VSW+++I  Y +     +A++LF +M+I  + P+E TM  + ++   
Sbjct: 278 GRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAG 337

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L AL +G  + +  EK  +  +V + NALI M+ K GD+  A  +F +M    I++W ++
Sbjct: 338 LSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAI 397

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G + HG G EA+++F++M+  G  P+ V F+G++ AC+H  LVD+G  YF+ +   F 
Sbjct: 398 ITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFR 457

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I+P +EHY C+V +L RSGR+ EA  F++   I  + + WRTL++AC           I 
Sbjct: 458 IVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIA 517

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           + L+  EP     Y+LLS+++A++ RW+   +IR++M +R +KK PG + +E+ N  + F
Sbjct: 518 EYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVF 577

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
              D  H ++  IYE + ++  K++  GYVP    VL DI +E K D L+ HSEKLA+A+
Sbjct: 578 TSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAY 637

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+KTP G PI ++KNLR+C+DCH+A K ISK+ NR IVVRD +RFHHF++
Sbjct: 638 GLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQN 688



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 16  VLKACAGIGDLNLGKSVHG--AVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           +LK  A   +L  G+++H    +    + D  ++  N+L+++Y  C+  + + RK+FD M
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDE-VSIARKLFDSM 83

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVG 131
             R+ VSWSA++ GY + G   +  +LF++M +   + P+E  + T +S+C     +E G
Sbjct: 84  PRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE-G 142

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K    +  K  +     + NALI +++KC DV  A+++  ++ G  I  +  V+ GL  H
Sbjct: 143 KQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQH 202

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIE 250
               EAV + + ++  G+  ++  +V +   C+    +  G++    M K+D      I 
Sbjct: 203 THMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIG 262

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
               ++DM  + G V     F  ++    N + W ++I+A
Sbjct: 263 --SSIIDMYGKCGNVLSGRTFFDRLQ-SRNVVSWTSIIAA 299



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 10/317 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + PN++     + +C     +  GK  HG  LK       +V+N L+ +Y  C   +  
Sbjct: 119 NIFPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKC-SDVGA 176

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++   +   D   ++ ++ G  +     +A+D+ + +   G+  +  T VT+   C  
Sbjct: 177 AIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCAS 236

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  + +GK V + + K  ++  V + +++IDM+ KCG+V      F  +  R +VSWTS+
Sbjct: 237 LKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSI 296

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IA    +    EA+ LF +M    +PP++     L ++ +    +  G +   +     G
Sbjct: 297 IAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQ-LHARAEKSG 355

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           +   +     ++ M  +SG +  A      M    N I W  +I+     G  K A S+ 
Sbjct: 356 LKGNVMVGNALIIMYFKSGDILAAQSVFSNMTC-CNIITWNAIITGHSHHGLGKEALSMF 414

Query: 305 KRLI--GNEPMHESNYV 319
           + ++  G  P    NYV
Sbjct: 415 QDMMATGERP----NYV 427



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 36/232 (15%)

Query: 116 VTVLSACTDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           + +L    D   L+ G+ + + +        +  V   N+LI+++ KC +V  A KLF S
Sbjct: 23  IKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDS 82

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACS------- 224
           M  R +VSW++++AG   +G  LE   LF++M ++  + P++      +S+C        
Sbjct: 83  MPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEG 142

Query: 225 ---HCGLVDKGREYFDSMKN----------DFGIIPKIEH---------YGCMVDMLCRS 262
              H   +  G E+   +KN          D G   +I +         Y  +V+ L + 
Sbjct: 143 KQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQH 202

Query: 263 GRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
             + EA + ++ +    IE N   + T+   C +  ++ L + +  +++ ++
Sbjct: 203 THMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSD 254


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 296/507 (58%), Gaps = 38/507 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEG 60
           G+  +  TY  ++ ACA +G   +GK VH  +LK +   +    + V N L+ +Y  C+ 
Sbjct: 284 GIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLY--CKN 341

Query: 61  G-IELGRKVFDEMSERDSVSWSAMIGGY-------------------------------A 88
             ++  RK+F  M  R+ ++W+A++ GY                               A
Sbjct: 342 NKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLA 401

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   + + LF+QM++ G  P +      L+AC+ LGALE G+ + + +       S+ 
Sbjct: 402 QNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLS 461

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + NA+I M+AKCG V+ A  +F +M    +VSW S+IA L  HG G++A+ LF++ML+ G
Sbjct: 462 VGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG 521

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD + F+ +L+ACSH GLV+KGR YF+SM   +GI P  +HY  MVD+ CR+G    A
Sbjct: 522 VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA 581

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              I  MP +    +W  L++ C   G + L     ++L    P ++  YVLLS+IYA +
Sbjct: 582 RIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADV 641

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            RW +  K+R++M  + ++K P  + IE++N+++ F+  D  H +   +Y  L+++G +M
Sbjct: 642 GRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK GY+P T  VL D+  E KE AL+ HSEKLA+ F ++K PPG  +R+ KN+R+C DCH
Sbjct: 702 KKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCH 761

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A KF+SK+  REI+VRDR RFHHFK+
Sbjct: 762 NAFKFMSKVARREIIVRDRKRFHHFKN 788



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 162/364 (44%), Gaps = 79/364 (21%)

Query: 8   PNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYG--------S 57
           P+ FT+  VL A    +G+      +H AV+K   G     V N L+ +Y         S
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIS 204

Query: 58  CEGGIELGRKVFDEMSERDSVSWS-------------------------------AMIGG 86
           C   +   RK+FDEM +RD ++W+                               AMI G
Sbjct: 205 CSAMVS-ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISG 263

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           Y   G   +A+ L R+M+  G+  D+IT  T++SAC ++G+ ++GK V ++I K  +N +
Sbjct: 264 YVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPN 323

Query: 147 VGLC----NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------ 184
              C    NALI ++ K   VD+A K+F +M  R I++W ++                  
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 185 -------------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
                        I+GLA +G G E + LF++M   G  P D AF G L+ACS  G ++ 
Sbjct: 384 EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           GR+    + +  G    +     M+ M  + G V+ A      MP   + + W ++I+A 
Sbjct: 444 GRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAAL 501

Query: 292 CARG 295
              G
Sbjct: 502 GQHG 505



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 56/314 (17%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           D   + TL+  Y +  G +ELGR++F+   +  RDSV ++AMI GYA  G    A++LFR
Sbjct: 78  DAIARTTLITAYCAL-GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFR 136

Query: 102 QMQISGVCPDEITMVTVLSACTDL--GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159
            M+     PD+ T  +VLSA         + G+   + ++  M   S  + NAL+ ++ K
Sbjct: 137 AMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 160 --------CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE----- 206
                   C  +  A KLF  M  R  ++WT++I G   +     A  +FE M+E     
Sbjct: 197 RASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 207 --------------------------AGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
                                      G+  DD+ +  ++SAC++ G    G++     +
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316

Query: 240 KNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           KN+        H  C      ++ + C++ +V EA +    MP+  N I W  ++S    
Sbjct: 317 KNEL----NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVN 371

Query: 294 RGELKLAESITKRL 307
            G ++ A+S  + +
Sbjct: 372 AGRMEEAKSFFEEM 385



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 144/383 (37%), Gaps = 100/383 (26%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N++     L +       +L ++VH  ++   F    H  N L+ MY      +   R++
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK-SSNLVYARQL 70

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+E+                                     PD I   T+++A   LG L
Sbjct: 71  FEEIPN-----------------------------------PDAIARTTLITAYCALGNL 95

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI----VSWTSV 184
           E+G+  E F    +  R     NA+I  +A  GD   AL+LFR+M          ++TSV
Sbjct: 96  ELGR--EIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 185 IAGLA-----------MH------GRGLEAVALFEEML--------EAGVP--------- 210
           ++ L            MH      G G  + ++   +L        E G+          
Sbjct: 154 LSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARK 213

Query: 211 -------PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-----IIPKIEHYGCMVD- 257
                   D++ +  +++       ++  RE F++M  + G     +I    H GC  + 
Sbjct: 214 LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEA 273

Query: 258 -MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
             LCR  R          + I+ + I + T+ISAC   G  ++ + +   ++ NE ++ +
Sbjct: 274 LTLCRKMRF---------LGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNE-LNPN 323

Query: 317 NYVLLSHIYAKLLRWEKKTKIRE 339
           +   LS   A +  + K  K+ E
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDE 346


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/431 (43%), Positives = 288/431 (66%), Gaps = 4/431 (0%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-DAI-DLF-RQMQ 104
           +  L+ ++  C G I   R+VFD ++  D  +W+A++  Y R   S  DAI +LF R + 
Sbjct: 158 RAVLLDVFTRC-GRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMIS 216

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
           +  V P+EIT+V V+ AC +LGAL  G W  +++ K+ +  +  +  AL++M+A CG +D
Sbjct: 217 LGTVRPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLD 276

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            A  +F + + R    + +++ GLA HG G  A+ LF+ M  +GVP D V  + +L +C+
Sbjct: 277 LAEHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCA 336

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           H  LVD+G EYFD M+ +FGI P+IEHYGC+VDML R+GR+ +A + I +MPI  N  I+
Sbjct: 337 HAELVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIY 396

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           R+LI AC   G L+L E +   L  ++P    N+VL++++YA++ RWE+  K R+ M   
Sbjct: 397 RSLIRACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSM 456

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+ K PGS+L++++  ++EF+ GDK+H  SKEIY M++E+  ++ + G+  +T+ VL D+
Sbjct: 457 GIDKSPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHRSSTTSVLFDV 516

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
            EEDK D L  HSE+LAI FAL+ + PGTPIRI+KNLRVC DCH + K +S++Y REIV+
Sbjct: 517 EEEDKADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLVSRVYGREIVM 576

Query: 465 RDRHRFHHFKD 475
           RDR RFHHF++
Sbjct: 577 RDRTRFHHFRE 587



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 13/194 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN+ T   V+ AC  +G L  G   H  ++K Q   +  V   LV MY  C G ++L 
Sbjct: 220 VRPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGC-GRLDLA 278

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF   S+RD+  ++AM+ G A  G    A+DLF +M+ SGV  D +T+++VL +C   
Sbjct: 279 EHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHA 338

Query: 126 GALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-- 180
             ++ G  +E F + ++   +   +     ++DM ++ G +D A KL   M    IV   
Sbjct: 339 ELVDEG--LEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEM---PIVPNA 393

Query: 181 --WTSVIAGLAMHG 192
             + S+I    +HG
Sbjct: 394 AIYRSLIRACDIHG 407


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/476 (39%), Positives = 294/476 (61%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ GV     +    L+AC  +G L+  + VH  +++     ++ V N L+  Y  C+ 
Sbjct: 211 MVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKR 270

Query: 61  GIELGRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +L  +VF+E+  + + +SW+AMI G+ +     DA  LF +MQ+  V PD  T+V+V+
Sbjct: 271 A-DLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVI 329

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A  D+      +W+  +  +  +++ V +  ALIDM++KCG V  A +LF S   R ++
Sbjct: 330 PAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVI 389

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W ++I G   HG G  AV LFEEM   G  P++  F+ +L+ACSH GLVD+G++YF SM
Sbjct: 390 TWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASM 449

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K D+G+ P +EHYG MVD+L R+G++ EA  FI+ MPIE    ++  ++ AC     ++L
Sbjct: 450 KKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVEL 509

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE   + +    P     +VLL++IYA    W+   ++R  M+K+G++K PG ++I+L N
Sbjct: 510 AEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKN 569

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           E++ F  G  +H  +K+IY  L ++  ++K  GYVP T  +  D+ ++ K   LN HSEK
Sbjct: 570 EVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEK 628

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA+ L++T PGT I+I KNLRVCNDCH+ATK IS +  REI++RD  RFHHFKD
Sbjct: 629 LAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKD 684



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 4/283 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P   T+  +LK CA   DL  G++VH  +       +      L +MY  C    +  R+
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD-ARR 72

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ--ISGVCPDEITMVTVLSACTDL 125
           VFD M  RD V+W+A++ GYAR GL + A++   +MQ    G  PD +T+V+VL AC D 
Sbjct: 73  VFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL   + V +F  +  ++  V +  A++D + KCG V+ A  +F  M  R  VSW ++I
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMI 192

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A +G   EA+ALF  M++ GV   D + +  L AC   G +D+ R   + +    G+
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVR-VGL 251

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              +     ++    +  R   A +   ++  +   I W  +I
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMI 294



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 4/287 (1%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G  P+  T   VL ACA    L+  + VH   L+    + ++V   ++  Y  C G +
Sbjct: 112 EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKC-GAV 170

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E  R VFD M  R+SVSW+AMI GYA  G +T+A+ LF +M   GV   + +++  L AC
Sbjct: 171 EAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQAC 230

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSW 181
            +LG L+  + V   + +  ++ +V + NALI  +AKC   D A ++F  + N +T +SW
Sbjct: 231 GELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISW 290

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++I G   +    +A  LF  M    V PD    V ++ A +      + R +      
Sbjct: 291 NAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQAR-WIHGYSI 349

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              +   +     ++DM  + GRV  A         + + I W  +I
Sbjct: 350 RHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSAR-DRHVITWNAMI 395


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 299/483 (61%), Gaps = 13/483 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   V+ AC   G  +  +++HG V+K     D  VQNTL+ MY    G I++
Sbjct: 313 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL-GKIDI 371

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-----IS------GVCPDEI 113
             ++F +M +RD V+W+ MI GY       DA+ L  +MQ     +S       + P+ I
Sbjct: 372 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 431

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T++T+L +C  L AL  GK + ++  K  +   V + +AL+DM+AKCG +  + K+F  +
Sbjct: 432 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 491

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             + +++W  +I    MHG G EA+ L   M+  GV P++V F+ + +ACSH G+VD+G 
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 551

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISACC 292
             F  MK D+G+ P  +HY C+VD+L R+GR+KEA++ +  MP + N    W +L+ A  
Sbjct: 552 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 611

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
               L++ E   + LI  EP   S+YVLL++IY+    W+K T++R  M ++G++K PG 
Sbjct: 612 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 671

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE  +E+++FV GD SH QS+++   L+ +  +M+K GYVP TS VL ++ E++KE  
Sbjct: 672 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 731

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLAIAF +L T PGT IR+ KNLRVCNDCH ATKFISKI +REI++RD  RFH 
Sbjct: 732 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 791

Query: 473 FKD 475
           FK+
Sbjct: 792 FKN 794



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 13/297 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M+  G+ P+ + +P +LKA A + D+ LGK +H  V KF +G D + V NTLV++Y  C 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC- 59

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G      KVFD +SER+ VSW+++I           A++ FR M    V P   T+V+V+
Sbjct: 60  GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 119

Query: 120 SACTDLG---ALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +AC++L     L +GK V ++ + K  +N  +   N L+ M+ K G +  +  L  S  G
Sbjct: 120 TACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
           R +V+W +V++ L  + + LEA+    EM+  GV PD+     +L ACSH  ++  G+E 
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 235 YFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +  ++KN  G + +    G  +VDM C   +V         M  +    +W  +I+ 
Sbjct: 238 HAYALKN--GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 291



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 18/304 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
           M+  GV P++FT   VL AC+ +  L  GK +H   LK     ++  V + LV MY +C+
Sbjct: 206 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 265

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
             +  GR+VFD M +R    W+AMI GY++     +A+ LF  M+ S G+  +  TM  V
Sbjct: 266 QVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 324

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC   GA    + +  F+ K+ ++R   + N L+DM+++ G +D A+++F  M  R +
Sbjct: 325 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 384

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVP---------PDDVAFVGLLSACSHCG 227
           V+W ++I G        +A+ L  +M  LE  V          P+ +  + +L +C+   
Sbjct: 385 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 444

Query: 228 LVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
            + KG+E +  ++KN+      +     +VDM  + G ++ + +   ++P + N I W  
Sbjct: 445 ALAKGKEIHAYAIKNNLA--TDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNV 501

Query: 287 LISA 290
           +I A
Sbjct: 502 IIMA 505


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/429 (44%), Positives = 280/429 (65%), Gaps = 9/429 (2%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL-----GLSTDAID----LFRQMQIS 106
           GS    I   R+VFD ++  D  +W+A++  YARL       +T A D    LF +M   
Sbjct: 154 GSAPIRIASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSL 213

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
            + P+EIT+V V+ AC +LGA+  G W  ++  K+ +  +  +  AL++M+A CG +D A
Sbjct: 214 AIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLA 273

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            ++F + + R    + +++ GLA+HG G  A++L + M  AGVP D V  + ++ AC+H 
Sbjct: 274 EQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHA 333

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           GLVD+G +YFD M+ +FGI P+IEHYGCM+DML R+GR+  A + I +M I  N  I+R+
Sbjct: 334 GLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRS 393

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           LI AC   G+L+L E +   L+  EP    N+VL+S+ YA+  RWE   K R+ M   G+
Sbjct: 394 LIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGI 453

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
            K PGS+L++++  ++EF+ GDK+H  SKEIY M++E+  ++ + G   +TS  L D+ E
Sbjct: 454 DKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEE 513

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           EDK D L+ HSE+LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y REIV+RD
Sbjct: 514 EDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRD 573

Query: 467 RHRFHHFKD 475
           R RFHHF+D
Sbjct: 574 RTRFHHFRD 582



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 11/218 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC  +G ++ G   H   +K +   +  V   LV MY  C G
Sbjct: 210 MLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC-G 268

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF   S+RD+  ++AM+ G A  G    A+ L  +M  +GV  D +T+++V+ 
Sbjct: 269 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 328

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +   +     +IDM ++ G ++ A KL   M    IV
Sbjct: 329 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEM---LIV 385

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 386 PNAAIYRSLIRACGIHGKLELGEKMIAELMR--LEPDD 421


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/475 (39%), Positives = 296/475 (62%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P   +    L ACA +GDL  G+ +H   ++ +   ++ V N+L+ MY  C+ 
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    +F ++  R  VSW+AMI G+A+ G   +A++ F QMQ   V PD  T V+V++
Sbjct: 388 -VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L      KW+   + +  ++++V +  AL+DM+AKCG +  A  +F  M+ R + +
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  A+ LFEEM +  + P+ V F+ ++SACSH GLV+ G + F  MK
Sbjct: 507 WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMK 566

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ I P ++HYG MVD+L R+GR+ EA +FI +MP++    ++  ++ AC     +  A
Sbjct: 567 ENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +RL    P     +VLL++IY     WEK  ++R  M ++G++K PG +++E+ NE
Sbjct: 627 EKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  +H  SK+IY  L+++  ++K+AGYVP T+ ++L + ++ KE  L+ HSEKL
Sbjct: 687 VHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTN-LILGLEDDVKEQLLSSHSEKL 745

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL T  GT I + KNLRVC DCH+ATK+IS +  REI+VRD  RFHHFK+
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKN 800



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 5/291 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++LK C    +L +GK +HG ++K  F  D+     L +MY  C   +   
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ-VHEA 189

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVFD M ERD VSW+ ++ GY++ G++  A+++   M    + P  IT+V+VL A + L
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSAL 249

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             + +GK +  +  +   +  V +  AL+DM+AKCG +  A  LF  M  R +VSW S+I
Sbjct: 250 RLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMI 309

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
                +    EA+ +F++ML+ GV P DV+ +G L AC+  G +++GR +   +  +  +
Sbjct: 310 DAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELEL 368

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARG 295
              +     ++ M C+   V  A     K+  ++  I+ W  +I      G
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKL--QSRTIVSWNAMILGFAQNG 417



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 160/333 (48%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  + P+  T   VL A + +  + +GK +HG  ++  F   +++   LV MY  C G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKC-G 285

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R +FD M ER+ VSW++MI  Y +     +A+ +F++M   GV P +++++  L 
Sbjct: 286 SLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALH 345

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG LE G+++     +  ++R+V + N+LI M+ KC +VD A  +F  +  RTIVS
Sbjct: 346 ACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVS 405

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--------------- 225
           W ++I G A +GR +EA+  F +M    V PD   +V +++A +                
Sbjct: 406 WNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 226 --------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                               CG +   R  FD M         +  +  M+D     G  
Sbjct: 466 RNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER-----HVTTWNAMIDGYGTHGIG 520

Query: 266 KEAHEF---IQKMPIEANPIIWRTLISACCARG 295
           K A E    +QK  I  N + + ++ISAC   G
Sbjct: 521 KAALELFEEMQKGTIRPNGVTFLSVISACSHSG 553



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 12/307 (3%)

Query: 6   VSPNKFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGI 62
           +  N + +P   +L+ C+ + +L   + +   + K     +   Q  LV ++  C  G +
Sbjct: 31  IPANVYEHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLF--CRYGSV 85

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   +VF+ + ++ +V +  M+ G+A++     A+  F +M+   V P       +L  C
Sbjct: 86  DEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVC 145

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            D   L VGK +   + K   +  +     L +M+AKC  V +A K+F  M  R +VSW 
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWN 205

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKN 241
           +++AG + +G    A+ +   M E  + P  +  V +L A S   L+  G+E    +M+ 
Sbjct: 206 TIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA 265

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            F  +  I     +VDM  + G +K A      M +E N + W ++I A       K A 
Sbjct: 266 GFDSLVNIA--TALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAM 322

Query: 302 SITKRLI 308
            I ++++
Sbjct: 323 VIFQKML 329


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/502 (38%), Positives = 302/502 (60%), Gaps = 33/502 (6%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G  P+  ++   L ACA IGD+ +G+ +H   +K     + +V N L+ MY  C G +E 
Sbjct: 550  GSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKC-GNVED 608

Query: 65   G-------------------------------RKVFDEMSERDSVSWSAMIGGYARLGLS 93
            G                               R VF++M +RD VSW+A+I  Y + G  
Sbjct: 609  GSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHG 668

Query: 94   TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
              A+DLF  M   G+ P+++T+ ++LSAC +LGA+++G+   + I K   +  + + N+L
Sbjct: 669  EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSL 728

Query: 154  IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
            I M+ KCG  D    +F  M    +++W +V+ G A +G G EA+ +FE+M   G+ PD 
Sbjct: 729  ITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQ 787

Query: 214  VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
            ++F+G+L ACSH GLVD+G  +F+SM   +GI+P + HY CMVD+L R+G + EA   I+
Sbjct: 788  MSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIE 847

Query: 274  KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
             MP++ + +IW  L+ AC     ++L + + +RL        + YVLLS+++A    W+K
Sbjct: 848  NMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDK 907

Query: 334  KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
              +IR++M  +G+ K PG + I++ N+++ FV GD++H Q +EIY  L E     +  GY
Sbjct: 908  VAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGY 967

Query: 394  VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
            +P T+ VL D+ EE K++ L  HSEKLA+ F +L TP G+PI+I+KNLR+C DCH+  KF
Sbjct: 968  MPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKF 1027

Query: 454  ISKIYNREIVVRDRHRFHHFKD 475
            +SK+  R+I++RD +RFHHF+D
Sbjct: 1028 MSKVTLRKIIIRDGNRFHHFRD 1049



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 7/245 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ PN+ T   +L AC  +G + LG+  H  + K  F   + V N+L+ MY  C  
Sbjct: 678 MLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKC-- 735

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G E G  VF+EM E D ++W+A++ G A+ GL  +AI +F QM++ G+ PD+++ + VL 
Sbjct: 736 GYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLC 795

Query: 121 ACTDLGALEVGKWV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           AC+  G ++ G W    S  +K  +   V     ++D+  + G + +A  L  +M  +  
Sbjct: 796 ACSHAGLVDEG-WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPD 854

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            V W +++    +H R +E      E L     P    +V L +  +  G+ DK  E   
Sbjct: 855 SVIWEALLGACRIH-RNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRK 913

Query: 238 SMKND 242
            MK+ 
Sbjct: 914 LMKDQ 918



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 13/253 (5%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N++V  Y  C    E  R++FD+M ER+SVSW  MI GY  +    +A D+F +M  +  
Sbjct: 299 NSVVTGYCHCYRMSE-ARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA 357

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            PD+   V VLSA T L  LE+   +     K      V + +A+++ + + G +D A+ 
Sbjct: 358 RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF-VGLLSACSHCG 227
            F +M  R   SWT++IA  A  GR  +A+ L+E      VP   VA    +++A +  G
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER-----VPEQTVATKTAMMTAYAQVG 472

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
            + K R  FD + N     P +  +  ++    ++G +KEA +  QKMP++ N   W  +
Sbjct: 473 RIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAM 526

Query: 288 ISACCARGELKLA 300
           I+      E + A
Sbjct: 527 IAGFVQNEESREA 539



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 150/323 (46%), Gaps = 39/323 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           ++ A A +G +   + +   +L      ++   N ++  Y +  G ++  + +F +M  +
Sbjct: 464 MMTAYAQVGRIQKARLIFDEILN----PNVVAWNAIIAGY-TQNGMLKEAKDLFQKMPVK 518

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +S SW+AMI G+ +   S +A++L  ++  SG  P + +  + LSAC ++G +E+G+ + 
Sbjct: 519 NSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIH 578

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS----------------------- 172
           S   K     +  + N LI M+AKCG+V+    +FR+                       
Sbjct: 579 SLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLD 638

Query: 173 --------MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
                   M  R +VSWT++I+     G G  A+ LF +ML  G+ P+ +    LLSAC 
Sbjct: 639 DARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACG 698

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           + G +  G E F ++    G    +     ++ M  + G  ++     ++MP E + I W
Sbjct: 699 NLGAIKLG-EQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITW 755

Query: 285 RTLISACCARGELKLAESITKRL 307
             ++  C   G  K A  I +++
Sbjct: 756 NAVLVGCAQNGLGKEAIKIFEQM 778



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 168/403 (41%), Gaps = 74/403 (18%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT +   G   G +E  R+VF+EM +RD VSW++MI GY++ G   +A  LF       V
Sbjct: 175 NTRIQELGRL-GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF----V 229

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +  T   +L+     G +E  +  E F  + M  R+V   NA+I  + + GD+  A K
Sbjct: 230 GKNIRTWTILLTGYAKEGRIEEAR--EVF--ESMTERNVVSWNAMISGYVQNGDLKNARK 285

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-------------------- 208
           LF  M  + + SW SV+ G     R  EA  LF++M E                      
Sbjct: 286 LFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEA 345

Query: 209 -----------VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG---- 253
                        PD   FV +LSA +  GL D   E   S++    I  K  + G    
Sbjct: 346 WDVFVKMCRTVARPDQSIFVVVLSAIT--GLDD--LELIGSLR---PIAIKTGYEGDVVV 398

Query: 254 --CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL----KLAESITKRL 307
              +++   R+G +  A  F + MP E N   W T+I+A    G L    +L E + ++ 
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT 457

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE---- 363
           +  +    + Y  +  I    L +++      V     +     + +++   ++++    
Sbjct: 458 VATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517

Query: 364 --------FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTS 398
                    + G   + +S+E  E+L E+ R    +G VP+ S
Sbjct: 518 KNSASWAAMIAGFVQNEESREALELLIELHR----SGSVPSDS 556



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
           CN  I    + G V++A ++F  M  R +VSW S+I G + +G+  EA  LF    +A V
Sbjct: 174 CNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFV 229

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
             +   +  LL+  +  G +++ RE F+SM         +  +  M+    ++G +K A 
Sbjct: 230 GKNIRTWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGYVQNGDLKNAR 284

Query: 270 EFIQKMPIEANPIIWRTLISACC 292
           +   +MP E N   W ++++  C
Sbjct: 285 KLFDEMP-EKNVASWNSVVTGYC 306


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 298/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ P++  +  +L AC         K VH  V +   G    VQ +LV+MY    G
Sbjct: 454 MQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKA-G 512

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +  EM E+   +W+ +I GYA  G S +A++ ++++Q+  +  D++T ++VL+
Sbjct: 513 ELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLN 572

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT   +L  GK + S   +  ++  V + NAL +M++KCG ++ A ++F SM  R+ VS
Sbjct: 573 ACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVS 632

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  ++   A HG   E + L  +M + GV  + + FV +LS+CSH GL+ +G +YF S+ 
Sbjct: 633 WNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLG 692

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +D GI  K EHYGC+VD+L R+G+++EA ++I KMP+E   + W +L+ AC  + +L   
Sbjct: 693 HDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRG 752

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +    +L+  +P + S  V+LS+IY++   W+   K+R  M  R +KK+PG + I++ N+
Sbjct: 753 KLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNK 812

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EF   D SH ++ EIY+ ++E+   M++AGYVP T  VL D++EE KE  L  HSEKL
Sbjct: 813 VHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKL 872

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TP  + + I KNLRVC DCH+ATKFISKI  REIVVRD HRFHHF+D
Sbjct: 873 AIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRD 927



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 150/296 (50%), Gaps = 3/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+ PN+ T+  +L        L     +H  + +    D   ++N LV++YG CE 
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R VFD++   + +SW++MIG Y +     DA+ LFR MQ  G+ PD +  +T+L 
Sbjct: 413 PDD-ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILG 471

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT        K V   +E+  +  S  +  +L++M+AK G++D A  + + M+ + I +
Sbjct: 472 ACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITA 531

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I G A+HGR  EA+  ++++    +P D V F+ +L+AC+    + +G+    S  
Sbjct: 532 WNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGK-MIHSNA 590

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            + G+   +     + +M  + G ++ A      MPI +  + W  ++ A    GE
Sbjct: 591 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS-AVSWNGMLQAYAQHGE 645



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 155/297 (52%), Gaps = 6/297 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV+PN  T   VL +C    +L  G  VH   L+  F  +  V   L++MYG C G
Sbjct: 49  MLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKC-G 107

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD-AIDLFRQMQISGVCPDEITMVTVL 119
            +   + VF+EM+E++ V+W+AM+G Y+  G     A++LF +M + GV  + IT + VL
Sbjct: 108 TLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVL 167

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           ++  D  AL  GK++ S + +   +  V +  AL++ + KCG +  A K+F  M  R++ 
Sbjct: 168 NSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVG 227

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W S+I+  ++  R  EA  +F+ M + G   D V F+ +L AC +   +  G+   +S+
Sbjct: 228 TWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI 287

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +  F +   +     ++ M  R    ++A +   +M  + N I W  +I+A    G
Sbjct: 288 SETSFELDLFVG--TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHG 341



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 171/386 (44%), Gaps = 51/386 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV  N  T+  VL +      L  GK +H  V + +   D+ V   LV+ Y  C G
Sbjct: 151 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKC-G 209

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD M  R   +W++MI  Y+    S +A  +F++MQ  G   D +T +++L 
Sbjct: 210 SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILD 269

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +   L+ GK V   I +      + +  ALI M+A+C   + A ++F  M    +++
Sbjct: 270 ACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLIT 329

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS---------------- 224
           W+++I   A HG   EA+  F  M + G+ P+ V F+ LL+  +                
Sbjct: 330 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 389

Query: 225 -------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                               C   D  R  FD ++     +P +  +  M+ +  +  R 
Sbjct: 390 EHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLE-----LPNLISWNSMIGIYVQCERH 444

Query: 266 KEAHEF---IQKMPIEANPIIWRTLISACC----ARGELKLAESITKRLIGNEPMHESNY 318
            +A +    +Q+  I+ + + + T++ AC      R    + + + +  +G  P+ +++ 
Sbjct: 445 DDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSL 504

Query: 319 VLLSHIYAKLLRWEKKTKIREVMDKR 344
           V   ++YAK    +    I + MD++
Sbjct: 505 V---NMYAKAGELDVAEVILQEMDEQ 527



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
           MY  C G +      F ++  R+ VSW+ MI  Y+      +A+ LF  M + GV P+ I
Sbjct: 1   MYSRC-GSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAI 59

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T+V VL++C     L  G  V +   ++   ++  +  AL++M+ KCG +  A  +F  M
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 174 NGRTIVSWTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
             + +V+W +++   ++ G   + AV LF  ML  GV  + + F+ +L++      + KG
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +     ++     +    +   +V+   + G + +A +    MP  +    W ++ISA
Sbjct: 180 KFIHSCVRESEHSLDVFVNTA-LVNTYTKCGSLTDARKVFDGMPCRSVG-TWNSMISA 235


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/416 (45%), Positives = 268/416 (64%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +EL  ++F EMS R  V+W+AMI GY   G + D + LFR M  +GV P+ +++ +VL
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C++L AL++GK V   + K  ++       +L+ M++KCGD+  A +LF  +  + +V
Sbjct: 271 LGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVV 330

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W ++I+G A HG G +A+ LF+EM + G+ PD + FV +L AC+H GLVD G +YF++M
Sbjct: 331 CWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM 390

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + DFGI  K EHY CMVD+L R+G++ EA + I+ MP + +P I+ TL+ AC     L L
Sbjct: 391 RRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNL 450

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE   K L+  +P   + YV L+++YA   RW+    IR  M    + KIPG + IE+++
Sbjct: 451 AEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINS 510

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++ F   D+ H +   I+E L ++ +KMK AGYVP    VL D+ EE KE  L  HSEK
Sbjct: 511 VVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEK 570

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LLK P G PIR+ KNLRVC DCHSATK+IS I  REI+VRD  RFHHFKD
Sbjct: 571 LAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKD 626



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G+   R  FD M  +D  SW+ MI   A++GL  +A  LF  M     C     MV+   
Sbjct: 119 GVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKN-CVSWSAMVSGYV 177

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DL A      VE F    M  RSV    A+I  + K G V+ A +LF+ M+ RT+V+
Sbjct: 178 ACGDLDAA-----VECFYAAPM--RSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVT 230

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IAG   +GR  + + LF  MLE GV P+ ++   +L  CS+   +  G++    + 
Sbjct: 231 WNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQ-VHQLV 289

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               +         +V M  + G +K+A E   ++P   + + W  +IS     G  K A
Sbjct: 290 CKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWNAMISGYAQHGAGKKA 348



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 12/179 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV PN  +   VL  C+ +  L LGK VH  V K     D     +LV MY  C G
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKC-G 312

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   ++F ++  +D V W+AMI GYA+ G    A+ LF +M+  G+ PD IT V VL 
Sbjct: 313 DLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLL 372

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGL------CNALIDMFAKCGDVDKALKLFRSM 173
           AC   G +++G  V+ F     + R  G+         ++D+  + G + +A+ L +SM
Sbjct: 373 ACNHAGLVDLG--VQYF---NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 128 LEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           + + K+V S   + +  N +V   N LI  + +CGD+D A+++F  M  ++ V+W S++A
Sbjct: 21  VTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILA 80

Query: 187 GLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
             A      E A  LFE++ +    P+ V++  +L+   H   V   R +FDSM      
Sbjct: 81  AFAKKPGHFEYARQLFEKIPQ----PNTVSYNIMLACHWHHLGVHDARGFFDSMP----- 131

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +  +  +  M+  L + G + EA      MP E N + W  ++S   A G+L  A
Sbjct: 132 LKDVASWNTMISALAQVGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGDLDAA 185


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/472 (40%), Positives = 288/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T+  +L     +  L  GK +H  V +  +  D+ V   L+ +YG CE   + 
Sbjct: 303 GIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQ- 361

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+F +M  +D ++W+ M   YA+ G   +A+ LF++MQ+ G  P   T+V VL  C  
Sbjct: 362 AWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAH 421

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L AL+ G+ + S I +      + +  ALI+M+ KCG + +A  +F  M  R I+ W S+
Sbjct: 422 LAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSM 481

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           +   A HG   E + LF +M   G   D V+FV +LSA SH G V  G +YF +M  DF 
Sbjct: 482 LGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 541

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESI 303
           I P  E YGC+VD+L R+GR++EA + + K+     + I+W TL+ AC    +   A++ 
Sbjct: 542 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAA 601

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            ++++  +P H   YV+LS++YA    W+   ++R++M  RG+KK PG + IE+ N ++E
Sbjct: 602 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHE 661

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F+ GD+SH +   IY  LD +  +M+ AGY+P T  +L D+ +E KED L  HSE+LAIA
Sbjct: 662 FLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIA 721

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ TPPGTP+R++KNLRVC+DCH+ATK+ISK+  REI+VRD HRFH+FKD
Sbjct: 722 FGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKD 773



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 152/292 (52%), Gaps = 5/292 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PNK T   V  A      L+ GK ++  V       D+ V N+ ++M+G+  G +  
Sbjct: 202 GVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNA-GLLGD 260

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++F++M +RD V+W+ +I  Y +     +A+ LF ++Q  G+  ++IT V +L+  T 
Sbjct: 261 ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L  GK +   +++   +R V +  AL+ ++ +C    +A K+F  M  + +++WT +
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 380

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDF 243
               A +G   EA+ LF+EM   G  P     V +L  C+H   + KGR+     ++N F
Sbjct: 381 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGF 440

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +   +E    +++M  + G++ EA    +KM  + + ++W +++ A    G
Sbjct: 441 RMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHG 489



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 1/233 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V P K TY  +L ACA    L  G  +HG +L+  F  D+ V   L++MY  C G
Sbjct: 97  MQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKC-G 155

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +      F  +  RD VSW+AMI    +      A  L+R+MQ+ GV P++IT+ TV +
Sbjct: 156 SVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFN 215

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  D   L  GK++ S +  +++   V + N+ ++MF   G +  A +LF  M  R +V+
Sbjct: 216 AYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVT 275

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
           W  VI     +    EAV LF  + + G+  +D+ FV +L+  +    + KG+
Sbjct: 276 WNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK 328



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 160/342 (46%), Gaps = 4/342 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+   +  +L+ C+   +++ G+ VH  V    F  +  V   L+ MY  C G +   ++
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQC-GSVPEAQQ 61

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF+ +  +D  +W+ MIG Y + G    A+ +F QMQ   V P ++T V +L+AC    +
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ G  +   I +Q     V +  ALI+M+ KCG V  A   F+ +  R +VSWT++IA 
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              H +   A  L+  M   GV P+ +    + +A      + +G+ +  S+ +   +  
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGK-FIYSLVSSRVMES 240

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +      ++M   +G + +A    + M ++ + + W  +I+          A  +  RL
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRL 299

Query: 308 IGNE-PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
             +    ++  +VL+ ++Y  L    K   I E++ + G  +
Sbjct: 300 QQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDR 341


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 291/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+  N+ T   +LK+ AG       + VH   +K  +  D +V N+L+  YG C  
Sbjct: 381 MYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKC-C 439

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVF+     D V++++MI  Y++ GL  +A+ ++ +MQ   + PD     ++ +
Sbjct: 440 LLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFN 499

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L A E GK +   + K  +   V   N+L++M+AKCG +D A  +F  ++ R IVS
Sbjct: 500 ACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS 559

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G +A+ LF +ML+ G+ P+ +  V +LSAC+H GLV + R +F  M+
Sbjct: 560 WSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLME 619

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P  EHY CMVD+L R GR+ EA   +++MP +A+  +W  L+ A      ++L 
Sbjct: 620 KLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELG 679

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + L+  EP     ++LL++IYA    W+   K+R  M    +KK PG + IEL ++
Sbjct: 680 RHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDK 739

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +Y F+ GD+SH +SKEIY  LD++  ++  AGYVP     L D+ + +KE  L  HSEKL
Sbjct: 740 VYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKL 799

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ TPPG PIR+ KNLRVC DCH+A KFISK+ +REI+VRD +RFHHF+D
Sbjct: 800 AVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRD 854



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 11/298 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  Y V+P+ FT    LKACA IG + LG+ +H A++K     D  V   L+ MY  C G
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKC-G 338

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R VFD M  +D + W+++I GY+  G   +A+ LF  M   G+  ++ T+ T+L 
Sbjct: 339 LLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK 398

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +     A    + V +   K        + N+L+D + KC  ++ A K+F       +V+
Sbjct: 399 STAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVA 458

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           +TS+I   + +G G EA+ ++  M +  + PD   F  L +AC++    ++G++ +   +
Sbjct: 459 YTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVL 518

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           K   G++  +     +V+M  + G + +A           N I WR ++S     G L
Sbjct: 519 K--CGLLSDVFAGNSLVNMYAKCGSIDDASCIF-------NEISWRGIVSWSAMIGGL 567



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 34/324 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SPN+F+   VL ACAG+ D N G  VHG ++K  +  D    N L+ MY    G
Sbjct: 179 MISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAK-SG 237

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    VF E+ + D VSW+A+I G      +  A+ L  +M    V P   T+ + L 
Sbjct: 238 CPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G +++G+ + S + K  +     +   LIDM++KCG +  A  +F  M  + ++ 
Sbjct: 298 ACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIV 357

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLV 229
           W S+I+G +  G  +EA++LF  M + G+  +      +L + +           H   +
Sbjct: 358 WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISI 417

Query: 230 DKGREYFDSMKND-----------------FGIIPK--IEHYGCMVDMLCRSGRVKEAHE 270
             G +Y   + N                  F + P   +  Y  M+    + G  +EA +
Sbjct: 418 KSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALK 477

Query: 271 FIQKMP---IEANPIIWRTLISAC 291
              +M    I+ +  I+ +L +AC
Sbjct: 478 MYLRMQDRDIKPDAFIFSSLFNAC 501



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 48/318 (15%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           YP +L       D++ G ++H  +++      + ++N LV++Y  C+    + RK+  + 
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRLG---LLGLRNRLVNLYSKCQC-FRVARKLVIDS 108

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           SE D VSWSA+I GY + G   +A+  + +M + G   +E T  +VL  C+    LE+GK
Sbjct: 109 SEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGK 168

Query: 133 WV----------------ESFIEKQMVNRSVGL------------------------CNA 152
            +                  F    ++N   GL                         NA
Sbjct: 169 QIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANA 228

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AK G  + A+ +F  +    IVSW +VIAG  +H +   A+ L  +M    V P 
Sbjct: 229 LLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPS 288

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
                  L AC+  GLV  GR+   + MK D    P       ++DM  + G +++A   
Sbjct: 289 MFTLSSALKACAAIGLVKLGRQLHSALMKMDME--PDSFVGVGLIDMYSKCGLLQDARMV 346

Query: 272 IQKMPIEANPIIWRTLIS 289
              MP + + I+W ++IS
Sbjct: 347 FDLMPXK-DVIVWNSIIS 363


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 283/476 (59%), Gaps = 23/476 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  +      +L ACA  G L+ GK VH  +       ++ V N L+ MY  C G
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF  M  +D +SW+ MIG                        PD  TM  VL 
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACVLP 440

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK +  +I +   +    + NAL+D++ KCG +  A  LF  +  + +VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+A F EM +AG+ PD+V+F+ +L ACSH GL+++G  +F  MK
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           NDF I PK+EHY CMVD+L R+G + +A+EFI+ +PI  +  IW  L+  C    +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  +WE+  ++RE + K+G++K PG + IE+  +
Sbjct: 621 EKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 361 IYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +  FV G+ S H  SK I  +L +M RKMK+ G+ P T   L++ +E  KE AL  HSEK
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEK 740

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL  PP   IR+ KNLRVC DCH   KF+SK   REIV+RD +RFHHFKD
Sbjct: 741 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKD 796



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 158/338 (46%), Gaps = 60/338 (17%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  VL+ CAG+     GK VH  +     G D  +   LV  Y +C G ++ GR+VFD 
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATC-GDLKEGRRVFDT 159

Query: 72  MS---------------------------------------------------ERDSVSW 80
           M                                                    +RD +SW
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISW 219

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           ++MI GY   GL+   + +++QM   G+  D  T+++VL  C + G L +GK V S   K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
               R +   N L+DM++KCGD+D AL++F  M  R +VSWTS+IAG    GR   A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            ++M + GV  D VA   +L AC+  G +D G++  D +K +  +   +     ++DM  
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYA 398

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + G ++ A+     M ++ + I W T+I      GELK
Sbjct: 399 KCGSMEAANSVFSTMVVK-DIISWNTMI------GELK 429



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 149/291 (51%), Gaps = 26/291 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  +  T   VL  CA  G L+LGK+VH   +K  F   I+  NTL+ MY  C G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC-G 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF++M ER+ VSW++MI GY R G S  AI L +QM+  GV  D + + ++L 
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILH 360

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+L+ GK V  +I+   +  ++ +CNAL+DM+AKCG ++ A  +F +M  + I+S
Sbjct: 361 ACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS 420

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W ++I  L                      PD      +L AC+    +++G+E     +
Sbjct: 421 WNTMIGEL---------------------KPDSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N +     + +   +VD+  + G +  A      +P   + + W  +I+ 
Sbjct: 460 RNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAG 507



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 112/282 (39%), Gaps = 61/282 (21%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++A I  + +LG   +A++L    + S +  +  T  +VL  C  L +   GK V S I+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 140 KQMVNRSVGLCNALIDMFAKCGDV------------------------------------ 163
              V     L   L+  +A CGD+                                    
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 164 ---------------DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                          + A +LF  +  R ++SW S+I+G   +G     + ++++M+  G
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           +  D    + +L  C++ G +  G+     ++K+ F    +I     ++DM  + G +  
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDG 304

Query: 268 AHEFIQKMPIEANPIIWRTLISACC----ARGELKLAESITK 305
           A    +KM  E N + W ++I+       + G +KL + + K
Sbjct: 305 ALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/503 (39%), Positives = 299/503 (59%), Gaps = 36/503 (7%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIEL 64
           VSP  FT+  +  ACA +    LG  +H   L    F  D++V N ++ MY  C G +  
Sbjct: 105 VSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKC-GSLRC 163

Query: 65  GRKVFDEMSERDSVSWS-------------------------------AMIGGYARLGLS 93
            R VFDEM ERD +SW+                               AM+ GYA+  + 
Sbjct: 164 ARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMP 223

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM--VNRSVGLCN 151
            DA+++FR+++  GV  DE+T+V V+SAC  LGA +   W+    E     V  +V + +
Sbjct: 224 MDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGS 283

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           ALIDM++KCG+V++A  +F+ M  R + S++S+I G A+HGR   A+ LF +MLE GV P
Sbjct: 284 ALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKP 343

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + V FVG+L+ACSH GLVD+G++ F SM+  +G+ P  E Y CM D+L R+G +++A + 
Sbjct: 344 NHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQL 403

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           ++ MP+E++  +W  L+ A    G   +AE  +KRL   EP +  NY+LLS+ YA   RW
Sbjct: 404 VETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRW 463

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDN-EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           +  +K+R+++ ++ +KK PG + +E  N  I++FV GD SH +  EI + L+++  ++K 
Sbjct: 464 DDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKG 523

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            GY P  S +   IN+ +K   L  HSEKLA+AF LL T  G+ I+I+KNLR+C DCH  
Sbjct: 524 IGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIV 583

Query: 451 TKFISKIYNREIVVRDRHRFHHF 473
               SK+  R+IVVRD  RFHHF
Sbjct: 584 MCGASKVTGRKIVVRDNTRFHHF 606



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 7/221 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSCEGGI 62
           GV  ++ T   V+ ACA +G       +        F  GD++ V + L+ MY  C G +
Sbjct: 237 GVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKC-GNV 295

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E    VF  M ER+  S+S+MI G+A  G +  AI LF  M  +GV P+ +T V VL+AC
Sbjct: 296 EEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTAC 355

Query: 123 TDLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VS 180
           +  G ++ G+ + + +EK   V  +  L   + D+ ++ G ++KAL+L  +M   +    
Sbjct: 356 SHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAV 415

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           W +++    +HG    A    + + E  + PD++    LLS
Sbjct: 416 WGALLGASHVHGNPDVAEIASKRLFE--LEPDNIGNYLLLS 454



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 53/342 (15%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI--ELGRKVFDEMS 73
           +L+ C+    LN  K VH  +         +V   L+ +  +          R +F ++ 
Sbjct: 14  ILERCS---SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
             +  +W+A+I  YA  G  + A+  +  M+   V P   T   + SAC  +    +G  
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 134 VES-------FIEKQMVNRSVGLCNALIDMFAKC-------------------------- 160
           + +       F     VN      NA+IDM+ KC                          
Sbjct: 131 LHAQTLLLGGFSSDLYVN------NAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIV 184

Query: 161 -----GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                GD+  A  LF  +  + +V+WT+++ G A +   ++A+ +F  + + GV  D+V 
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVT 244

Query: 216 FVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            VG++SAC+  G         D +  + FG+   +     ++DM  + G V+EA++  + 
Sbjct: 245 LVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKG 304

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMH 314
           M  E N   + ++I      G  + A  +   ++  G +P H
Sbjct: 305 MR-ERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNH 345


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 297/475 (62%), Gaps = 5/475 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCEGGIE 63
           GVSP+  T   +  A A  GD    KS+H  V++  +  DDI   N +V MY      IE
Sbjct: 265 GVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSN-IE 323

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSAC 122
             +++FD M  +DSVSW+ +I GY + GL+ +A++ +  MQ   G+   + T V+VL A 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + LGAL+ G  + +   K  +N  V +   LID++AKCG + +A+ LF  M  R+   W 
Sbjct: 384 SHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWN 443

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GL +HG G EA+ LF  M + G+ PD V FV LL+ACSH GLVD+GR +FD M+  
Sbjct: 444 AIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVT 503

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I+P  +HY CM DML R+G++ EA  FIQ MPI+ +  +W  L+ AC   G +++ + 
Sbjct: 504 YDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKV 563

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            ++ L   +P +   YVL+S++YAK+ +W+   ++R ++ ++ ++K PG + IE+   + 
Sbjct: 564 ASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVN 623

Query: 363 EFVCGDKS--HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            F  G+++  H Q +EI   L  +  K++  GYV   S VL D+ +++KE  LN HSE+L
Sbjct: 624 VFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERL 683

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF ++ TP  TP+ I KNLRVC DCH+ATK+IS+I  REI+VRD +RFHHFKD
Sbjct: 684 AIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKD 738



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 172/375 (45%), Gaps = 37/375 (9%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGI 62
           Y   P+ FT+P +++A            +H   L+       +    +LVH Y    G I
Sbjct: 64  YPFRPDGFTFPSLIRAAPSNAS---AAQLHACALRLGLVRPSVFTSGSLVHAYLRF-GRI 119

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               KVFDEMSERD  +W+AM+ G  R   + +A+ LF +M   GV  D +T+ +VL  C
Sbjct: 120 SEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC 179

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             LG   +   +  +  K  +++ + +CNALID++ K G +++A  +F  M  R +V+W 
Sbjct: 180 VLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWN 239

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDK 231
           S+I+G    G+   A+ +F+ M  +GV PD +  V L SA +           HC ++ +
Sbjct: 240 SIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRR 299

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G +  D +  +            +VDM  +   ++ A      MP++ + + W TLI+  
Sbjct: 300 GWDVDDIIAGN-----------AIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITGY 347

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
              G   LA    +R  G+   HE    +     + L  +     +++     GM+    
Sbjct: 348 MQNG---LANEAVERY-GHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ-----GMRMHAL 398

Query: 352 STLIELDNEIYEFVC 366
           S  I L+ ++Y   C
Sbjct: 399 SIKIGLNVDVYVGTC 413



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 165/327 (50%), Gaps = 9/327 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV+ +  T   VL  C  +GD  L   +H   +K     ++ V N L+ +YG   G
Sbjct: 160 MVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKL-G 218

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  + VF  M  RD V+W+++I G  + G +  A+ +F+ M+ SGV PD +T+V++ S
Sbjct: 219 MLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLAS 278

Query: 121 ACTDLGALEVGKWVESFIEKQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           A    G     K +  ++ ++  +   +   NA++DM+AK  +++ A ++F SM  +  V
Sbjct: 279 AIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSV 338

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKG-REYFD 237
           SW ++I G   +G   EAV  +  M +  G+      FV +L A SH G + +G R +  
Sbjct: 339 SWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHAL 398

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           S+K   G+   +    C++D+  + G++ EA    +KMP  +    W  +IS     G  
Sbjct: 399 SIK--IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG-PWNAIISGLGVHGHG 455

Query: 298 KLAESITKRLI--GNEPMHESNYVLLS 322
             A ++  R+   G +P H +   LL+
Sbjct: 456 AEALTLFSRMQQEGIKPDHVTFVSLLA 482


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 271/414 (65%), Gaps = 5/414 (1%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +F +M ++  VSW+ MIG Y +  +  +A++L+ +M+  G  PD +++ +VL AC D 
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +GK +  +IE++ +  ++ L NALIDM+AKCG ++KA  +F +M  R +VSWT++I
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMI 382

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +     GRG +AVALF ++ ++G+ PD +AFV  L+ACSH GL+++GR  F  M + + I
Sbjct: 383 SAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 442

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P++EH  CMVD+L R+G+VKEA+ FIQ M +E N  +W  L+ AC    +  +      
Sbjct: 443 TPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAAD 502

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L    P     YVLLS+IYAK  RWE+ T IR +M  +G+KK PG++ +E++  I+ F+
Sbjct: 503 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 562

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH QS EIY  LD + +KMK+ GYVP +   L D+ EEDKE  L  HSEKLAI FA
Sbjct: 563 VGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 622

Query: 426 LLKTP-----PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           L+ T          IRI KNLR+C DCH A K IS+I +REI++RD +RFH F+
Sbjct: 623 LMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+  +   VL AC     L+LGK +HG + + +   ++ ++N L+ MY  C G +E 
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC-GCLEK 362

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF+ M  RD VSW+AMI  Y   G   DA+ LF ++Q SG+ PD I  VT L+AC+ 
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422

Query: 125 LGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NGRTIV 179
            G LE G+     +     +   +     ++D+  + G V +A +  + M    N R   
Sbjct: 423 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV-- 480

Query: 180 SWTSVIAGLAMHGRG----LEAVALFEEMLEAGVPPDDVAFVGLLS 221
            W +++    +H       L A  LF+      + P+   +  LLS
Sbjct: 481 -WGALLGACRVHSDTDIGLLAADKLFQ------LAPEQSGYYVLLS 519



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 16/328 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           D+   ++VH  ++      +  +   L+  Y S +  +   RKVFDE+ ER+ +  + MI
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKD-VASARKVFDEIPERNVIIINVMI 112

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
             Y   G   + + +F  M    V PD  T   VL AC+  G + +G+ +     K  ++
Sbjct: 113 RSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLS 172

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            ++ + N L+ M+ KCG + +A  +   M+ R +VSW S++ G A + R  +A+ +  EM
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
               +  D      LL A S+     +   Y   M    G    +  +  M+ +  ++  
Sbjct: 233 ESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAM 289

Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI-----TKRLIGNEPMHES 316
             EA E   +M     E + +   +++ AC     L L + I      K+LI N  +  +
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344
               L  +YAK    EK   + E M  R
Sbjct: 350 ----LIDMYAKCGCLEKARDVFENMKSR 373


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/487 (41%), Positives = 295/487 (60%), Gaps = 13/487 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVH 53
           ML  G  PN  T   +L  CA  G L  GK  H   +K+         GDD+ V N L+ 
Sbjct: 377 MLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 436

Query: 54  MYGSCEGGIELGRKVFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQM--QISGVC 109
           MY  C+   +  R +FD +  +D   V+W+ +IGG A+ G + +A++LF QM    + V 
Sbjct: 437 MYSKCKSP-KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 495

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALK 168
           P+  T+   L AC  LGAL  G+ + +++ +     + + + N LIDM++K GDVD A  
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 555

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M+ R  VSWTS++ G  MHGRG EA+ +F EM +  + PD V FV +L ACSH G+
Sbjct: 556 VFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGM 615

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G  YF+ M  DFG++P  EHY CMVD+L R+GR+ EA E I+ MP++  P +W  L+
Sbjct: 616 VDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALL 675

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           SAC     ++L E    +L+  E  ++ +Y LLS+IYA    W+   +IR +M   G+KK
Sbjct: 676 SACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKK 735

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
            PG + ++       F  GD SH  S++IY++L ++ +++K  GYVP     L D+++E+
Sbjct: 736 RPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEE 795

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           K D L++HSEKLA+A+ +L T PG PIRI KNLR C DCHSA  +IS I   EI+VRD  
Sbjct: 796 KGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSS 855

Query: 469 RFHHFKD 475
           RFHHFK+
Sbjct: 856 RFHHFKN 862



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 169/356 (47%), Gaps = 51/356 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ +T+PFVLKAC  I     G SVH  V    F  ++ V N LV MYG C G
Sbjct: 136 MQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRC-G 194

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMV 116
             E  R+VFDEM ER   D VSW++++  Y + G S  A+ +F +M +  G+ PD +++V
Sbjct: 195 AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLV 254

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-- 174
            VL AC  +GA   GK V  +  +  +   V + NA++DM+AKCG +++A K+F  M   
Sbjct: 255 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314

Query: 175 ---------------GR------------------TIVSWTSVIAGLAMHGRGLEAVALF 201
                          GR                   +V+W++VIAG A  G G EA+ +F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE--------YFDSMKNDFGIIPKIEHYG 253
            +ML  G  P+ V  V LLS C+  G +  G+E          +  +ND G    +    
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPG--DDLMVIN 432

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKLAESITKRLI 308
            ++DM  +    K A      +P +   ++ W  LI      GE   A  +  +++
Sbjct: 433 ALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQML 488



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 156/334 (46%), Gaps = 48/334 (14%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G+ P+  +   VL ACA +G  + GK VHG  L+    +D+ V N +V MY  C G +
Sbjct: 243 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC-GMM 301

Query: 63  ELGRKVFDEMSERDSVSWSAM-----------------------------------IGGY 87
           E   KVF+ M  +D VSW+AM                                   I GY
Sbjct: 302 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 361

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN--- 144
           A+ GL  +A+D+FRQM + G  P+ +T+V++LS C   G L  GK       K ++N   
Sbjct: 362 AQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDE 421

Query: 145 ----RSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAV 198
                 + + NALIDM++KC     A  +F  +    R++V+WT +I G A HG   EA+
Sbjct: 422 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 481

Query: 199 ALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
            LF +ML+    V P+       L AC+  G +  GR+    +  +      +    C++
Sbjct: 482 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 541

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           DM  +SG V  A      M  + N + W +L++ 
Sbjct: 542 DMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTG 574



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 8/251 (3%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ +I     LG   D + L+R+MQ  G  PD  T   VL AC ++ +   G  V + + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI---VSWTSVIAGLAMHGRGLE 196
                 +V + N L+ M+ +CG  + A ++F  M  R +   VSW S++A     G  + 
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 197 AVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           A+ +FE M E  G+ PD V+ V +L AC+  G   +G++         G+   +     +
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAV 291

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VDM  + G ++EA++  ++M ++ + + W  +++     G    A  + +++   E   E
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKI--REEKIE 348

Query: 316 SNYVLLSHIYA 326
            N V  S + A
Sbjct: 349 LNVVTWSAVIA 359


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/475 (37%), Positives = 295/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+       + ACAGI  +  G+ +H  V    +  D+ + N LV++Y  C G
Sbjct: 437 MQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARC-G 495

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    +F+ +  +D ++W+ M+ G+A+ GL  +A+++F +M  +GV  +  T V+ +S
Sbjct: 496 RSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSIS 555

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L  ++ GK + + + K        + NALI ++ KCG ++ A   F  M+ R  VS
Sbjct: 556 ASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS 615

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I   + HG GLEA+ LF++M + G+ P+DV F+G+L+ACSH GLV++G  YF SM 
Sbjct: 616 WNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMS 675

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++ GI P+ +HY C+VD+L R+G++  A +F+++MP+ AN ++WRTL+SAC     +++ 
Sbjct: 676 SEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIG 735

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K L+  EP   ++YVLLS+ YA   +W  +  +R++M  RG++K PG + IE+ N 
Sbjct: 736 ELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNV 795

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD+ H  + +IY+ L ++  ++ K GY+     +  +  +E K+     HSEKL
Sbjct: 796 VHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKL 855

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+  PP  P+R++KNLRVCNDCH+  KF S++  REIV+RD +RFHHF +
Sbjct: 856 AVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNN 910



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 165/295 (55%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+FTYP +L+ C   G++NLG+ +H   +K  F  D++V   L+ MY S  G
Sbjct: 336 MVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMY-SKYG 394

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R++ + +  +D VSW++MI GY +     +A++ F+ MQ+ G+ PD I + + +S
Sbjct: 395 WLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAIS 454

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  + A+  G+ + S +     +  V + NAL++++A+CG   +A  LF ++  +  ++
Sbjct: 455 ACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKIT 514

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +++G A  G   EA+ +F +M +AGV  +   FV  +SA ++   + +G++   ++ 
Sbjct: 515 WNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              G   + E    ++ +  + G +++A     +M  E N + W T+I++C   G
Sbjct: 575 KT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHG 627



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 146/279 (52%), Gaps = 4/279 (1%)

Query: 13  YPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +   L+ C G +    L   +H   +    G+D    N L+ +Y   +G ++  R+VF++
Sbjct: 44  FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAK-KGLVQRARRVFEQ 102

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +S RD+VSW AM+ GYAR GL  +A+ L+ QM  SGV P    + +VLSACT     E G
Sbjct: 103 LSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG 162

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + V + + KQ       + NALI ++ + G +  A ++F  M     V++ ++I+  A  
Sbjct: 163 RLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQC 222

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G G  A+ +FEEM  +G  PD V    LL+AC+  G ++KG++   S     G+ P    
Sbjct: 223 GNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ-LHSYLLKAGMSPDYII 281

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            G ++D+  + G + EA E I K     N ++W  ++ A
Sbjct: 282 EGSLLDLYVKCGVIVEALE-IFKSGDRTNVVLWNLMLVA 319



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 144/291 (49%), Gaps = 3/291 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G +P+  T   +L ACA IGDLN GK +H  +LK     D  ++ +L+ +Y  C G I  
Sbjct: 239 GWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKC-GVIVE 297

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++F      + V W+ M+  Y ++     + DLF QM  +GV P+E T   +L  CT 
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G + +G+ +     K      + +   LIDM++K G +DKA ++   +  + +VSWTS+
Sbjct: 358 AGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSM 417

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   H    EA+  F++M   G+ PD++     +SAC+    + +G++    +    G
Sbjct: 418 IAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-G 476

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               +  +  +V++  R GR KEA    + +    + I W  ++S     G
Sbjct: 477 YSADVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMVSGFAQSG 526



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 151/287 (52%), Gaps = 7/287 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P  +    VL AC        G+ VH  V K     +  V N L+ +Y    G + L
Sbjct: 138 GVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRF-GSLSL 196

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF EM   D V+++ +I  +A+ G    A+++F +M++SG  PD +T+ ++L+AC  
Sbjct: 197 AERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACAS 256

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +G L  GK + S++ K  ++    +  +L+D++ KCG + +AL++F+S +   +V W  +
Sbjct: 257 IGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLM 316

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           +          ++  LF +M+ AGV P++  +  LL  C++ G ++ G + +  S+K  F
Sbjct: 317 LVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGF 376

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLIS 289
                +   G ++DM  + G + +A   ++   +EA  ++ W ++I+
Sbjct: 377 ESDMYVS--GVLIDMYSKYGWLDKARRILE--VLEAKDVVSWTSMIA 419


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/476 (42%), Positives = 283/476 (59%), Gaps = 23/476 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  +      +L ACA  G L+ GK VH  +       ++ V N L+ MY  C G
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF  M  +D +SW+ MIG                        PD  TM  VL 
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACVLP 440

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK +  +I +   +    + NAL+D++ KCG +  A  LF  +  + +VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+A F EM +AG+ PD+V+F+ +L ACSH GL+++G  +F  MK
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           NDF I PK+EHY CMVD+L R+G + +A+EF++ +PI  +  IW  L+  C    +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  +WE+  ++RE + K+G++K PG + IE+  +
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 361 IYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +  FV G+ S H  SK I  +L +M RKMK+ G+ P T   L++ +E  KE AL  HSEK
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEK 740

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL  PP   IR+ KNLRVC DCH   KF+SK   REIV+RD +RFHHFKD
Sbjct: 741 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 796



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 158/338 (46%), Gaps = 60/338 (17%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  VL+ CAG+     GK VH  +     G D  +   LV  Y +C G ++ GR+VFD 
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATC-GDLKEGRRVFDT 159

Query: 72  MS---------------------------------------------------ERDSVSW 80
           M                                                    +RD +SW
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISW 219

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           ++MI GY   GL+   + +++QM   G+  D  T+++VL  C + G L +GK V S   K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
               R +   N L+DM++KCGD+D AL++F  M  R +VSWTS+IAG    GR   A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            ++M + GV  D VA   +L AC+  G +D G++  D +K +  +   +     ++DM  
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYA 398

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + G ++ A+     M ++ + I W T+I      GELK
Sbjct: 399 KCGSMEAANSVFSTMVVK-DIISWNTMI------GELK 429



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 149/291 (51%), Gaps = 26/291 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  +  T   VL  CA  G L+LGK+VH   +K  F   I+  NTL+ MY  C G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC-G 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF++M ER+ VSW++MI GY R G S  AI L +QM+  GV  D + + ++L 
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILH 360

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+L+ GK V  +I+   +  ++ +CNAL+DM+AKCG ++ A  +F +M  + I+S
Sbjct: 361 ACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS 420

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W ++I  L                      PD      +L AC+    +++G+E     +
Sbjct: 421 WNTMIGEL---------------------KPDSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N +     + +   +VD+  + G +  A      +P   + + W  +I+ 
Sbjct: 460 RNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAG 507



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 61/282 (21%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++A I  + +LG   +A++L    Q S +  +  T  +VL  C  L +   GK V S I+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSEL--ETKTYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 140 KQMVNRSVGLCNALIDMFAKCGDV------------------------------------ 163
              V     L   L+  +A CGD+                                    
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 164 ---------------DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                          + A +LF  +  R ++SW S+I+G   +G     + ++++M+  G
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           +  D    + +L  C++ G +  G+     ++K+ F    +I     ++DM  + G +  
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDG 304

Query: 268 AHEFIQKMPIEANPIIWRTLISACC----ARGELKLAESITK 305
           A    +KM  E N + W ++I+       + G +KL + + K
Sbjct: 305 ALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/472 (41%), Positives = 294/472 (62%), Gaps = 3/472 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           + P+  T   +    + +GD+   +SV G  L K  F +DI + N +V MY    G ++ 
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL-GLVDS 402

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACT 123
            R VF+ +   D +SW+ +I GYA+ G +++AI+++  M+  G +  ++ T V+VL AC+
Sbjct: 403 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 462

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
             GAL  G  +   + K  +   V +  +L DM+ KCG ++ AL LF  +     V W +
Sbjct: 463 QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT 522

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +IA    HG G +AV LF+EML+ GV PD + FV LLSACSH GLVD+G+  F+ M+ D+
Sbjct: 523 LIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDY 582

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           GI P ++HYGCMVDM  R+G+++ A +FI+ M ++ +  IW  L+SAC   G + L +  
Sbjct: 583 GITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIA 642

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
           ++ L   EP H   +VLLS++YA   +WE   +IR +   +G++K PG + +E+DN++  
Sbjct: 643 SEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEV 702

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  G+++H   +E+Y  L  +  K+K  GYVP    VL D+ +++KE  L  HSE+LAIA
Sbjct: 703 FYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIA 762

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           FAL+ TP  T IRI KNLRVC DCHS TKFISKI  REI+VRD +RFHHFK+
Sbjct: 763 FALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 814



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 196/423 (46%), Gaps = 60/423 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G++P+  T+P VLKAC  + D   G  +H   LKF F  D++V  +L+H+Y   + 
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FDEM  RD  SW+AMI GY + G + +A+ L   ++      D +T+V++LS
Sbjct: 201 -VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLS 255

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT+ G    G  + S+  K  +   + + N LID++A+ G +    K+F  M  R ++S
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE------ 234
           W S+I    ++ + L A++LF+EM  + + PD +  + L S  S  G +   R       
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375

Query: 235 ---YF--------------------DSMKNDFGIIPKIE--HYGCMVDMLCRSGRVKEAH 269
              +F                    DS +  F  +P  +   +  ++    ++G   EA 
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 435

Query: 270 EFIQKM----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL--LSH 323
           E    M     I AN   W +++ AC   G L+    +  RL+ N  ++   +V+  L+ 
Sbjct: 436 EMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLAD 494

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIY---EM 380
           +Y K  R E    +   + +  +  +P +TLI          C     H  K +    EM
Sbjct: 495 MYGKCGRLEDALSLFYQIPR--VNSVPWNTLI---------ACHGFHGHGEKAVMLFKEM 543

Query: 381 LDE 383
           LDE
Sbjct: 544 LDE 546



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           +L   K +H  ++  +   ++ +   LV++Y    G + L R  FD +  RD  +W+ MI
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYL-GNVALARHTFDHIQNRDVYAWNLMI 124

Query: 85  GGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
            GY R G S++ I  F    + SG+ PD  T  +VL AC     +  G  +     K   
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGF 181

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
              V +  +LI ++++   V  A  LF  M  R + SW ++I+G    G   EA+ L   
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG 241

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           +       D V  V LLSAC+  G  ++G     S     G+  ++     ++D+    G
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
           R+++  +   +M +  + I W ++I A
Sbjct: 297 RLRDCQKVFDRMYVR-DLISWNSIIKA 322


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/473 (41%), Positives = 294/473 (62%), Gaps = 4/473 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           + P+  T   +    + +G++   +SV G  L K  F +DI + N +V MY    G ++ 
Sbjct: 344 IQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL-GLVDS 402

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSAC 122
            R VF+ +  +D +SW+ +I GYA+ G +++AI+++  M+  G  +  ++ T V+VL AC
Sbjct: 403 ARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPAC 462

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           +  GAL  G  +   + K  +   V +  +L DM+ KCG +D AL LF  +     V W 
Sbjct: 463 SQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWN 522

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++IA    HG G +AV LF+EML+ GV PD + FV LLSACSH GLVD+G   F+ M+ D
Sbjct: 523 TLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTD 582

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+  R+G+++ A  FI+ MP++ +  IW  L+SAC   G + L + 
Sbjct: 583 YGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKI 642

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            ++ L   EP H   +VLLS++YA   +WE   +IR +   +G++K PG + +E+DN++ 
Sbjct: 643 ASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVE 702

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G+++H   +E+Y  L  +  K+K  GYVP    VL D+ +++KE  L  HSE+LA+
Sbjct: 703 VFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAM 762

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AFAL+ TP  T IRI KNLRVC DCHS TKFISKI  REI+VRD +RFHHFK+
Sbjct: 763 AFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 815



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 164/347 (47%), Gaps = 46/347 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           ML  G+ P+  T+P VLKAC  + D   G  +H   LKF F  D++V  +L+H+Y  C  
Sbjct: 144 MLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLY--CRY 198

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R +FDEM  RD  SW+AMI GY + G + +A+ L   ++      D +T+V++L
Sbjct: 199 GAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLL 254

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT+ G    G  + S+  K  +   + + N LID++A+ G +    K+F  M  R ++
Sbjct: 255 SACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLI 314

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE----- 234
           SW S+I    ++ + L A+ LF+EM  + + PD +  + L S  S  G +   R      
Sbjct: 315 SWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFT 374

Query: 235 ----YF--------------------DSMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEA 268
               +F                    DS +  F  +P   +  +  ++    ++G   EA
Sbjct: 375 LRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEA 434

Query: 269 HEFIQKM-----PIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
            E    M      I AN   W +++ AC   G L+    +  RL+ N
Sbjct: 435 IEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 481



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           +L   K +H  ++      ++ +   LV++Y    G + L R  FD +  RD  +W+ MI
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYL-GNVALARYTFDHIHNRDVYAWNLMI 124

Query: 85  GGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
            GY R G S++ I  F    + SG+ PD  T  +VL AC ++     G  +     K   
Sbjct: 125 SGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGF 181

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
              V +  +LI ++ + G V  A  LF  M  R + SW ++I+G    G   EA+ L + 
Sbjct: 182 MWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDG 241

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           +       D V  V LLSAC+  G  ++G     S     G+  ++     ++D+    G
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
            +K+  +   +M +  + I W ++I A
Sbjct: 297 SLKDCQKVFDRMYVR-DLISWNSIIKA 322


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 285/435 (65%), Gaps = 10/435 (2%)

Query: 50  TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL-----GLSTDAID----LF 100
            L+ ++  C G I   R+VFD ++  D  +W+A++  YARL       +T A D    LF
Sbjct: 518 ALLGVFARC-GRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELF 576

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            +M    + P+EIT+V V+ AC +LGA+  G W  ++  K+ +  +  +  AL++M+A C
Sbjct: 577 VRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC 636

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G +D A ++F +++ R    + +++ GLA+HG G  A++L + M  AGVP D V  + ++
Sbjct: 637 GRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVM 696

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            AC+H GLVD+G +YFD M+ +FGI P+IEHYGCM+DML R+G++  A + I +M I  N
Sbjct: 697 CACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPN 756

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
             I+R+LI AC   G+L+L E +   L+  EP    N+VL+S+ YA+  RWE   K R+ 
Sbjct: 757 AAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKE 816

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M   G+ K PGS+L++++  ++EF+ GDK+H  SKEIY M++E+  ++ + G   +TS  
Sbjct: 817 MKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSA 876

Query: 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNR 460
           L D+ EEDK D L+ HSE+LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y R
Sbjct: 877 LFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGR 936

Query: 461 EIVVRDRHRFHHFKD 475
           EIV+RDR RFHHF+D
Sbjct: 937 EIVMRDRTRFHHFRD 951



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 11/218 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC  +G ++ G   H   +K +   +  V   LV MY  C G
Sbjct: 579 MLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGC-G 637

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF  +S+RD+  ++AM+ G A  G    A+ L  +M  +GV  D +T+++V+ 
Sbjct: 638 RLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 697

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +   +     +IDM ++ G ++ A KL   M    IV
Sbjct: 698 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEM---LIV 754

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 755 PNAAIYRSLIRACGIHGKLELGEKMIAELMR--LEPDD 790



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA-MHGRGLEAVA-------- 199
           L  AL+ +FA+CG +    ++F  +    + +W ++++  A +  R +            
Sbjct: 515 LGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILE 574

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           LF  ML   + P+++  V ++ AC   G V  G
Sbjct: 575 LFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 607


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/483 (42%), Positives = 294/483 (60%), Gaps = 13/483 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVHMYGS 57
           G  PN  T   +L  CA  G L  GK  H   +K+         GDD+ V N L+ MY  
Sbjct: 362 GSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSK 421

Query: 58  CEGGIELGRKVFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEI 113
           C+   +  R +FD +  +D   V+W+ +IGG A+ G + +A++LF QM    + V P+  
Sbjct: 422 CKSP-KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAF 480

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRS 172
           T+   L AC  LGAL  G+ + +++ +     + + + N LIDM++K GDVD A  +F +
Sbjct: 481 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDN 540

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           M+ R  VSWTS++ G  MHGRG EA+ +F EM + G+ PD V FV +L ACSH G+VD+G
Sbjct: 541 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG 600

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
             YF+ M  DFG++P  EHY CMVD+L R+GR+ EA E I+ MP++  P +W  L+SAC 
Sbjct: 601 INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACR 660

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
               ++L E    +L+  E  ++ +Y LLS+IYA    W+   +IR +M   G+KK PG 
Sbjct: 661 VYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGC 720

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + ++       F  GD SH  S++IY++L ++ +++K  GYVP     L D+++E+K D 
Sbjct: 721 SWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDL 780

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L++HSEKLA+A+ +L T PG PIRI KNLR C DCHSA  +IS I   EI+VRD  RFHH
Sbjct: 781 LSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHH 840

Query: 473 FKD 475
           FK+
Sbjct: 841 FKN 843



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 168/356 (47%), Gaps = 51/356 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P+ +T+PFVLKAC  I     G SVH  V    F  ++ V N LV MYG C G
Sbjct: 117 MQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRC-G 175

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMV 116
             E  R+VFDEM ER   D VSW++++  Y + G S  A+ +F +M +  G+ PD +++V
Sbjct: 176 AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLV 235

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-- 174
            VL AC  +GA   GK V  +  +  +   V + NA++DM+AKCG +++A K+F  M   
Sbjct: 236 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295

Query: 175 ---------------GR------------------TIVSWTSVIAGLAMHGRGLEAVALF 201
                          GR                   +V+W++VIAG A  G G EA+ +F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE--------YFDSMKNDFGIIPKIEHYG 253
            +M   G  P+ V  V LLS C+  G +  G+E          +  +ND G    +    
Sbjct: 356 RQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPG--DDLMVIN 413

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKLAESITKRLI 308
            ++DM  +    K A      +P +   ++ W  LI      GE   A  +  +++
Sbjct: 414 ALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQML 469



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 157/334 (47%), Gaps = 48/334 (14%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           + G+ P+  +   VL ACA +G  + GK VHG  L+    +D+ V N +V MY  C G +
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC-GMM 282

Query: 63  ELGRKVFDEMSERDSVSWSAM-----------------------------------IGGY 87
           E   KVF+ M  +D VSW+AM                                   I GY
Sbjct: 283 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 342

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN--- 144
           A+ GL  +A+D+FRQM++ G  P+ +T+V++LS C   G L  GK       K ++N   
Sbjct: 343 AQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDE 402

Query: 145 ----RSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAV 198
                 + + NALIDM++KC     A  +F  +    R++V+WT +I G A HG   EA+
Sbjct: 403 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 462

Query: 199 ALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
            LF +ML+    V P+       L AC+  G +  GR+    +  +      +    C++
Sbjct: 463 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 522

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           DM  +SG V  A      M  + N + W +L++ 
Sbjct: 523 DMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTG 555



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 8/251 (3%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W+ +I     LG   D + L+R+MQ  G  PD  T   VL AC ++ +   G  V + + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI---VSWTSVIAGLAMHGRGLE 196
                 +V + N L+ M+ +CG  + A ++F  M  R +   VSW S++A     G  + 
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 197 AVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           A+ +FE M E  G+ PD V+ V +L AC+  G   +G++         G+   +     +
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAV 272

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VDM  + G ++EA++  ++M ++ + + W  +++     G    A  + +++   E   E
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKI--REEKIE 329

Query: 316 SNYVLLSHIYA 326
            N V  S + A
Sbjct: 330 LNVVTWSAVIA 340


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/472 (43%), Positives = 300/472 (63%), Gaps = 5/472 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSCEGGIELG 65
           P+KF++   ++AC+ + DL  G+ +H  + +   +   D+ V   L++MY  C G +E  
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKC-GDLEEA 190

Query: 66  RKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSACT 123
           RKVFD +  + DSV W+AMI  YA+ G    A+DL+R M   + + P + T VTV+  C 
Sbjct: 191 RKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCA 250

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L AL+ G+ + + +     + ++ + NAL+ M+ KCG +D+AL +F SM  +  +SW +
Sbjct: 251 ELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNT 310

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+  A HG   +A+ L++EM   GV P +V FVGLLSACSH GLV  G +YF  M++D 
Sbjct: 311 IISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDH 370

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            I P + H+GC++D+L R GR+ EA   ++ MPI+AN + W +L+ AC   G+LK     
Sbjct: 371 RIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRA 430

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             +++   P     YVLLS+IYA   RW+   KIR++M  RG+KK PG + IE+ + ++E
Sbjct: 431 ADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHE 490

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV GD+SH Q +EIY  L +M  +MK  GYVP TS V  D+ EE+KED L  HSEKLAI 
Sbjct: 491 FVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIV 550

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +  +  P  + +RIVKNLRVC DCH+ATKF+S+I  R+IVVRD  RFH F++
Sbjct: 551 YGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFEN 602



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 160/304 (52%), Gaps = 13/304 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M + G  P++ T+  +L A A +G   ++ G+ +H          ++ V   ++ MYG C
Sbjct: 20  MYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKC 79

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMV 116
            G ++  R  F+E+  ++SV+W+AM+  Y   G   +A++LFR+M  +     PD+ +  
Sbjct: 80  -GRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFS 138

Query: 117 TVLSACTDLGALEVGKWVESFI--EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM- 173
             + AC++L  LE G+ +   +  E + +++ V +  AL++M++KCGD+++A K+F S+ 
Sbjct: 139 IAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIR 198

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKG 232
           +    V W ++IA  A HGRG +A+ L+  M +   + P    FV ++  C+    + +G
Sbjct: 199 HDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG 258

Query: 233 REYFDSMK-NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           R     ++  +F     + +   +V M  + G + EA +    M ++ + I W T+IS+ 
Sbjct: 259 RAIHARVRATNFDANLLVSN--ALVHMYGKCGCLDEALDVFHSMKLK-DEISWNTIISSY 315

Query: 292 CARG 295
              G
Sbjct: 316 AYHG 319



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 6/197 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P + T+  V+  CA +  L  G+++H  V    F  ++ V N LVHMYG C G ++  
Sbjct: 235 LAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKC-GCLDEA 293

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
             VF  M  +D +SW+ +I  YA  G S  A+ L+++M + GV P E+T V +LSAC+  
Sbjct: 294 LDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHG 353

Query: 126 GALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWTS 183
           G +  G  +     +   +  SV     +ID+  + G + +A  + +SM  +   V W S
Sbjct: 354 GLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMS 413

Query: 184 VIAGLAMHG---RGLEA 197
           ++     HG   RG+ A
Sbjct: 414 LLGACKTHGDLKRGVRA 430



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 5/229 (2%)

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA--LEVGKWVESFIEKQ 141
           +  ++  G  ++A+  FR+M  SG  PD +T   +L+A   +GA  ++ G+ +  +    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
            +  +V +  A+I M+ KCG +D A   F  +  +  V+W +++    + GR  EA+ LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 202 EEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-CMVDM 258
            EM E      PD  +F   + ACS+   +++GRE  + ++ +   + K    G  +++M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
             + G ++EA +    +  +A+ + W  +I+A    G  K A  + + +
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM 229


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/476 (42%), Positives = 283/476 (59%), Gaps = 23/476 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  +      +L ACA  G L+ GK VH  +       ++ V N L+ MY  C G
Sbjct: 205 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC-G 263

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF  M  +D +SW+ M+G                        PD  TM  +L 
Sbjct: 264 SMEGANSVFSTMVVKDIISWNTMVGELK---------------------PDSRTMACILP 302

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK +  +I +   +    + NAL+D++ KCG +  A  LF  +  + +VS
Sbjct: 303 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 362

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+A F EM +AG+ PD+V+F+ +L ACSH GL+++G  +F  MK
Sbjct: 363 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 422

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           NDF I PK+EHY CMVD+L R+G + +A++FI+ +PI  +  IW  L+  C    +++LA
Sbjct: 423 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 482

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  +WE+  ++RE + K+G++K PG + IE+   
Sbjct: 483 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGR 542

Query: 361 IYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +  FV G+ S H  SK+I  +L +M RKMK+ GY P T   L++ +E  KE AL  HSEK
Sbjct: 543 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 602

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL  PP   IR+ KNLRVC DCH   KF+SK   REIV+RD +RFHHFKD
Sbjct: 603 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 658



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 152/297 (51%), Gaps = 31/297 (10%)

Query: 21  AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--------------CEGGIELGR 66
           A  GDL  G+ V   + K     ++++ N +V  Y                 E GIE  R
Sbjct: 7   ATCGDLKEGRRVFDTMEK----KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKR 62

Query: 67  -----KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
                ++FD++ +RD +SW++MI GY   GL+   + +++QM   G+  D  T+++VL  
Sbjct: 63  SESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 122

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C   G L +GK V S   K    R +   N L+DM++KCGD+D AL++F  M  R +VSW
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 182

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+IAG    G    A+ L ++M + GV  D VA   +L AC+  G +D G++  D +K 
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 242

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +  +   +     ++DM  + G ++ A+     M ++ + I W T++      GELK
Sbjct: 243 N-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMV------GELK 291



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 149/291 (51%), Gaps = 26/291 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  +  T   VL  CA  G L+LGK+VH   +K  F   I+  NTL+ MY  C G
Sbjct: 104 MMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC-G 162

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF++M ER+ VSW++MI GY R G S  AI L +QM+  GV  D + + ++L 
Sbjct: 163 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILH 222

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+L+ GK V  +I+   +  ++ +CNAL+DM+AKCG ++ A  +F +M  + I+S
Sbjct: 223 ACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS 282

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W +++  L                      PD      +L AC+    +++G+E     +
Sbjct: 283 WNTMVGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYIL 321

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N +     + +   +VD+  + G +  A      +P   + + W  +I+ 
Sbjct: 322 RNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAG 369



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 55/190 (28%)

Query: 153 LIDMFAKCGDVDKALKLFRSMN-------------------------------------- 174
           L+  +A CGD+ +  ++F +M                                       
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 175 -------------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
                         R ++SW S+I+G   +G     + ++++M+  G+  D    + +L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 222 ACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            C+  G +  G+     ++K+ F    +I     ++DM  + G +  A    +KM  E N
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERN 178

Query: 281 PIIWRTLISA 290
            + W ++I+ 
Sbjct: 179 VVSWTSMIAG 188


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 286/471 (60%), Gaps = 4/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            GV P+KFT    L  C     L LGK +H  V +     DI V+N L++MY +C G    
Sbjct: 633  GVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNC-GDWRE 691

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
                F+ M  RD VSW+ M   YA+ GL+ +A+ LFR MQ+ GV PD++T  T L+    
Sbjct: 692  ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGG 751

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
               +  GK       +  ++  V +   L+ ++AKCG +D+A+ LFR     T+V   ++
Sbjct: 752  SALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAI 811

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I  LA HG   EAV +F +M + GV PD    V ++SAC H G+V++G   F +MK  FG
Sbjct: 812  IGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFG 871

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
            I P +EHY C VD+L R+G+++ A + I+KMP E N ++W +L+  C  +G+ +L E   
Sbjct: 872  ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCA 931

Query: 305  KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +R++  +P + + +V+LS+IY    +W+     R+ +  + +K  PG + +E+  +++EF
Sbjct: 932  QRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEF 991

Query: 365  VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
            V GD+SH Q+ EIY +LD++   M++AGY    ++  LD  +E KE AL  HSE++AIAF
Sbjct: 992  VAGDRSHPQTDEIYVVLDKLELLMRRAGY---EADKGLDAEDELKEKALGYHSERIAIAF 1048

Query: 425  ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
             L+ TPP T ++IVKNLRVC DCH+ATK+IS I  REI+VRD  RFHHF +
Sbjct: 1049 GLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSN 1099



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 12/298 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAV----LKFQFGDDIHVQNTLVHMYG 56
           +LE   +PN +T   +L ACA   DL +G+S+H  +    L+ +      V N +++MY 
Sbjct: 118 LLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYA 177

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISGVCPDEITM 115
            C G  E    VF  + E+D VSW+AM G YA+      DA+ +FR+M +  + P+ IT 
Sbjct: 178 KC-GSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITF 236

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +T L ACT   +L  G W+ S + +  +       NALI+M+ KCGD + A  +F++M  
Sbjct: 237 ITALGACT---SLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMAS 293

Query: 176 RT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           R    +VSW ++I+     GR  +A+A+F  +   G+ P+ V  + +L+A +  G+    
Sbjct: 294 RQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGA 353

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              F     + G +  +     ++ M  + G    A    +++  + + I W T++ A
Sbjct: 354 ARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 14/272 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH----VQNTLVHMYG 56
           ML+ GV P+  ++  VL +C          S    VL+    +  +    ++  L+ M+G
Sbjct: 532 MLQGGVLPDALSFTSVLSSCYC--------SQEAQVLRMCILESGYRSACLETALISMHG 583

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
            C   +E  R VFDEM   D VSW+AM+   A      +   LFR+MQ+ GV PD+ T+ 
Sbjct: 584 RCRE-LEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLA 642

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T L  C D   L +GK + + + +  +   + + NAL++M++ CGD  +AL  F +M  R
Sbjct: 643 TTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSW  + A  A  G   EAV LF  M   GV PD + F   L+      LV  G+  F
Sbjct: 703 DLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGK-LF 761

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             +  + G+   +     +V +  + G++ EA
Sbjct: 762 HGLAAESGLDSDVSVATGLVKLYAKCGKLDEA 793



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 16/299 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   ++PN  T+   L AC  + D   G  +H  + +   G D    N L++MYG C G
Sbjct: 224 MLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKC-G 279

Query: 61  GIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             E    VF  M+ R   D VSW+AMI      G   DA+ +FR++++ G+ P+ +T++T
Sbjct: 280 DWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 118 VLSACT----DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           +L+A      D GA    +     I +    R V + NA+I M+AKCG    A  +FR +
Sbjct: 340 ILNALAASGVDFGA---ARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRI 396

Query: 174 NGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
             +  ++SW +++          + V  F  ML AG+ P+ V+F+ +L+ACS+   +D G
Sbjct: 397 RWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG 456

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISA 290
           R+    +        +      +V M  + G + EA    ++MP+ +  ++ W  ++ A
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 151/303 (49%), Gaps = 13/303 (4%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L++C    DL  GK  H  +        + + N L++MY  C G +E    +F +M
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRC-GSLEEAHAIFSKM 86

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVG 131
            ER+ VSW+A+I   A+ G    A  LFR M + S   P+  T+V +L+AC +   L +G
Sbjct: 87  EERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 132 KWVESFIEKQMVNR----SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + + + I +  + R    +  + NA+I+M+AKCG  + A+ +F ++  + +VSWT++   
Sbjct: 147 RSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGA 206

Query: 188 LAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
            A   R   +A+ +F EML   + P+ + F+  L AC+      +   +  S+ ++ G+ 
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL----RDGTWLHSLLHEAGLG 262

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI--EANPIIWRTLISACCARGELKLAESIT 304
                   +++M  + G  + A+   + M    E + + W  +ISA    G    A +I 
Sbjct: 263 FDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIF 322

Query: 305 KRL 307
           +RL
Sbjct: 323 RRL 325



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 162/385 (42%), Gaps = 52/385 (13%)

Query: 5   GVSPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN  T   +L A A  G D    +  HG + +  +  D+ V N ++ MY  C G   
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKC-GFFS 387

Query: 64  LGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
               VF  +  + D +SW+ M+G           ++ F  M ++G+ P++++ + +L+AC
Sbjct: 388 AAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNAC 447

Query: 123 TDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRT 177
           ++  AL+ G+ + S I    +  V  SV     L+ M+ KCG + +A  +F+ M    R+
Sbjct: 448 SNSEALDFGRKIHSLILTRRRDYVESSVA--TMLVSMYGKCGSIAEAELVFKEMPLPSRS 505

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-------------- 223
           +V+W  ++   A + R  EA     EML+ GV PD ++F  +LS+C              
Sbjct: 506 LVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCIL 565

Query: 224 -----------------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
                              C  +++ R  FD M  D G    +  +  MV     +   K
Sbjct: 566 ESGYRSACLETALISMHGRCRELEQARSVFDEM--DHG---DVVSWTAMVSATAENRDFK 620

Query: 267 EAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITKRL--IGNEPMHESNYVLL 321
           E H   ++M +E    +     T +  C     L L + I   +  IG E        LL
Sbjct: 621 EVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALL 680

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGM 346
            ++Y+    W +     E M  R +
Sbjct: 681 -NMYSNCGDWREALSFFETMKARDL 704



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           +  LL +C     + KG+   + + N  G+   +    C+++M  R G ++EAH    KM
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANA-GLEQHLFLGNCLINMYVRCGSLEEAHAIFSKM 86

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
             E N + W  LISA    G    A ++ + ++       ++Y L++ + A
Sbjct: 87  E-ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/467 (39%), Positives = 295/467 (63%), Gaps = 2/467 (0%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +F +  +L   A   +L +G+ +H   +      ++ V N+LV MY  C+   E  R +F
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANR-IF 399

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
            +++ + SV W+A+I GY + GL  D + LF +M  + +  D  T  ++L AC +L +L 
Sbjct: 400 ADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLT 459

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           +GK + S I +     +V   +AL+DM+AKCG + +AL++F+ M  R  VSW ++I+  A
Sbjct: 460 LGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYA 519

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
            +G G  A+  FE+M+ +G+ P+ V+F+ +L ACSHCGLV++G +YF+SM   + + P+ 
Sbjct: 520 QNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRR 579

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EHY  MVDMLCRSGR  EA + + +MP E + I+W +++++C      +LA     +L  
Sbjct: 580 EHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFN 639

Query: 310 NEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
            + + ++  YV +S+IYA    W+   K+++ + +RG++K+P  + +E+  + + F   D
Sbjct: 640 MKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSAND 699

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
            SH Q+KEI   LDE+ ++M++ GY P ++  L +++EE K ++L  HSE++AIAFAL+ 
Sbjct: 700 TSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALIS 759

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           TP G+PI ++KNLR CNDCH+A K ISKI NREI VRD  RFHHF D
Sbjct: 760 TPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTD 806



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 160/331 (48%), Gaps = 11/331 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+  T   +L        +N    VHG V+K  +   + V N+L+  Y     
Sbjct: 130 MCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRS 189

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L   +F  M+E+D+V+++A++ GY++ G + DAI+LF +MQ  G  P E T   VL+
Sbjct: 190 -LGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT 248

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +  +E G+ V SF+ K     +V + NAL+D ++K   + +A KLF  M     +S
Sbjct: 249 AGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGIS 308

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           +  +I   A +GR  E++ LF E+           F  LLS  ++   ++ GR+ +  ++
Sbjct: 309 YNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAI 368

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D   I ++     +VDM  +  +  EA+     +  +++ + W  LIS    +G   L
Sbjct: 369 VTD--AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSS-VPWTALISGYVQKG---L 422

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            E   K  +    MH +     S  YA +LR
Sbjct: 423 HEDGLKLFV---EMHRAKIGADSATYASILR 450



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 146/307 (47%), Gaps = 7/307 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G  PN   + F ++     GDL   + +   +       ++   NT++  Y    G
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPH----KNVISTNTMIMGYLK-SG 87

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M +R  V+W+ +IGGYA+     +A +LF  M   G+ PD IT+ T+LS
Sbjct: 88  NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLS 147

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             T+  ++     V   + K   + ++ +CN+L+D + K   +  A  LF+ M  +  V+
Sbjct: 148 GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + +++ G +  G   +A+ LF +M + G  P +  F  +L+A      ++ G++   S  
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQ-VHSFV 266

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                +  +     ++D   +  R+ EA +   +MP E + I +  LI+ C   G ++ +
Sbjct: 267 VKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEES 325

Query: 301 ESITKRL 307
             + + L
Sbjct: 326 LELFREL 332



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +  +  TY  +L+ACA +  L LGK +H  +++     ++   + LV MY  C G I+  
Sbjct: 438 IGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKC-GSIKEA 496

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++F EM  R+SVSW+A+I  YA+ G    A+  F QM  SG+ P+ ++ +++L AC+  
Sbjct: 497 LQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHC 556

Query: 126 GALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VSWTS 183
           G +E G ++  S  +   +        +++DM  + G  D+A KL   M      + W+S
Sbjct: 557 GLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSS 616

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           ++    +H     A+   +++       D   +V +
Sbjct: 617 ILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSM 652


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/475 (38%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     P+ FT+   LKA    G   +G+ +H   +K+   +D++V + L+ MY  C+ 
Sbjct: 154 MLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQ 213

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++  +VFD +  ++ VSW+A+I G+AR G     +  F +MQ +G      T  +V S
Sbjct: 214 -MDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFS 272

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +GALE G+WV + + K     +  + N ++ M+AK G +  A K+F  ++ R +V+
Sbjct: 273 ALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVT 332

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++   A +G G EAVA FEE+ + G+  + + F+ +L+ACSH GLV +G++YFD MK
Sbjct: 333 WNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMK 392

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ + P+I+HY   VD+L R+G +KEA  F+ KMP+E    +W  L+ AC      K+ 
Sbjct: 393 -DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIG 451

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W+   ++R++M   G+KK P  + +E++N 
Sbjct: 452 QYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENS 511

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +S+EIY M +E+  ++KKAGYVP T  VLL I E+++E  L  HSEK+
Sbjct: 512 VHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKI 571

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+  P G  IRI+KN+R+C DCHSA +++S+++ REIVVRD +RFHHF +
Sbjct: 572 ALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSN 626



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 5/291 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y  ++ ACA   +L   +++H  + + +   D  + N+L+HMY  C G +   
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC-GAVSDA 116

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VFD +  RD VSW+ +I GYA+  +  +A+ L   M  +   P   T  + L A    
Sbjct: 117 RHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGAC 176

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G   +G+ + +   K  ++  V + +AL+DM+A+C  +D A+++F  ++ +  VSW ++I
Sbjct: 177 GGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALI 236

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFG 244
           AG A  G G   +  F EM   G       +  + SA +  G +++GR     M K+   
Sbjct: 237 AGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQK 296

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +   + +   ++ M  +SG + +A +   ++  + + + W T+++A    G
Sbjct: 297 LTAFVAN--TILGMYAKSGSMVDARKVFDRVD-QRDLVTWNTMLTAFAQYG 344


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/457 (43%), Positives = 288/457 (63%), Gaps = 1/457 (0%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ACA +  L +G+ +H  + K     D+   N+L+ MY    G I+    +FDEM+ +D
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVKD 290

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           +VS+SA++ GY + G + +A  +F++MQ   V PD  TMV+++ AC+ L AL+ G+    
Sbjct: 291 TVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            +  + +     +CNALIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G E
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKE 410

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A ALF EM   G PPD V F+ LLSACSH GLV +G+ +F  M + +G+ P++EHY CMV
Sbjct: 411 ATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMV 470

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R G + EA+EFIQ MP+ A+  +W  L+ AC     + L + +++ +    P    
Sbjct: 471 DLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTG 530

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           N+VLLS+IY+   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH QS E
Sbjct: 531 NFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPE 590

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIR 436
           IY  LD +   +KK GY P TS VL D+ EE+KE AL  HSEKLAIA+ +L       I 
Sbjct: 591 IYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIF 650

Query: 437 IVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           + KNLRVC DCH+  K IS +  R I+VRD +RFHHF
Sbjct: 651 VTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 14/300 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL----------KFQFGDDIHVQNT 50
           M  + + PN  T   +L   A  G L  G SVH   +          K +  D + +   
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC- 109
           L+ MY  C G +   R+VFD M  R+ V+WSA+IGG+      T A  LF+ M   G+C 
Sbjct: 164 LLDMYAKC-GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
               ++ + L AC  L  L +G+ + + + K  V+  +   N+L+ M+AK G +D+A+ L
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  +  VS++++++G   +GR  EA  +F++M    V PD    V L+ ACSH   +
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR    S+    G+  +      ++DM  + GR+  + +    MP   + + W T+I+
Sbjct: 343 QHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIA 400



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 174/399 (43%), Gaps = 64/399 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PN +T+PF LKAC+ + D + G+++H   +      D+ V   L+ MY  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKC-A 59

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID--LFRQMQISGVCPDEITMVTV 118
            +     +F  M  RD V+W+AM+ GYA  G+   A+   L  QMQ+  + P+  T+V +
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 119 LSACTDLGALEVGKWVESFI----------EKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
           L      GAL  G  V ++            K  +   V L  AL+DM+AKCG +  A +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML----------------------- 205
           +F +M  R  V+W+++I G  +  R  +A  LF+ ML                       
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 239

Query: 206 -------------EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
                        ++GV  D  A   LLS  +  GL+D+    FD M      +     Y
Sbjct: 240 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-----VKDTVSY 294

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAE----SITK 305
             +V    ++GR +EA    +KM    +E +     +LI AC     L+       S+  
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           R + +E    S    L  +YAK  R +   ++  +M  R
Sbjct: 355 RGLASE---TSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/471 (42%), Positives = 300/471 (63%), Gaps = 9/471 (1%)

Query: 12  TYPFVLKACAGIGDLNLGKSVH--GAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           TY  +L ACA   DL  G + H   A +       + V  TLV++YG C G ++  R+V 
Sbjct: 236 TYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTV-VAGTLVNLYGKC-GRVDDARRVL 293

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
           D M  R SVSW+AMI  YA+ G + +AI+LF+ M + G  P +IT+++V+ +C  LG L 
Sbjct: 294 DAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLS 353

Query: 130 VGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFR--SMNGRTIVSWTSVIA 186
           +GK + + I      ++S+ L NA+I M+ KCG+++ A ++F    +  R++V+WT++I 
Sbjct: 354 LGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIR 413

Query: 187 GLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
             A +G G EA+ LF+EML + G  P+ V F+ +L ACSH G +++  E+F SM  DFG+
Sbjct: 414 AYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGV 473

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESIT 304
            P  +HY C+VD+L R+GR+ EA + + +    EA+ + W   +SAC   G+L+ ++   
Sbjct: 474 PPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAA 533

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           KR+   EP + +  VLLS++YA   R     +IR  M   G+KK  G + IE++N ++EF
Sbjct: 534 KRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEF 593

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           +  D SH +  EIY  L+ + R++K+AGYVP T  VL D++EE K   L  HSE+LA+A 
Sbjct: 594 MVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMAL 653

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            ++ TPPGT +R+VKNLRVC+DCH+ATKFIS+I  R+I+VRD  RFHHFKD
Sbjct: 654 GIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKD 704



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 153/317 (48%), Gaps = 6/317 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  T    L AC    +L LG+ ++  +       D HV+++L+ MYG C  
Sbjct: 124 MCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCR- 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   + FD   E+D V W+AMI  YA    ++ A++L R+M + G+     T V++L 
Sbjct: 183 EIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLD 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVG-LCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC     L  G           ++RS   +   L++++ KCG VD A ++  +M  RT V
Sbjct: 243 ACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSV 302

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++IA  A +G   EA+ LF+ M   G  P D+  + ++ +C+  G +  G+     +
Sbjct: 303 SWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARI 362

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELK 298
           ++       +     ++ M  + G ++ A E  + +P+    ++ W  +I A    G  +
Sbjct: 363 RSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGE 422

Query: 299 LAESITKRLI---GNEP 312
            A  + + ++   G EP
Sbjct: 423 EAIELFQEMLIDGGTEP 439



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L  C G+ ++   + +H  +   +   +  + N LV  Y S  G +   +  F  +
Sbjct: 38  YASLLWQCRGLDEV---RKLHAQIAARKLDRNTFLGNVLVDAY-SKHGSLHGAQLAFGRI 93

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           +  ++ SW+ ++  YA+ G    A  LF  M   GV P+ +T+ T L ACT    L +G+
Sbjct: 94  TLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGR 153

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   I  + +     + ++LI M+ +C ++++A + F     + +V WT++I+  A + 
Sbjct: 154 KLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNW 213

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-----GLVDKGREYFDSMKNDFGIIP 247
           R   A+ L   M   G+      +V LL AC+       G+    R     +     ++ 
Sbjct: 214 RTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVA 273

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK-- 305
                G +V++  + GRV +A   +  MP+  + + W  +I+A    G    A ++ +  
Sbjct: 274 -----GTLVNLYGKCGRVDDARRVLDAMPVRTS-VSWTAMIAAYAQNGNAAEAINLFQCM 327

Query: 306 RLIGNEP 312
            L G EP
Sbjct: 328 DLEGAEP 334


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/502 (39%), Positives = 292/502 (58%), Gaps = 33/502 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ F Y  +LKACA +  L LGK VH   +   F DD  V+++LV MY  C G   + 
Sbjct: 100 LQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKC-GLPSIA 158

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI---------------SGVC- 109
           R VFD +  + SVSW+AM+ GYAR GL  +A++LF +  +               SG C 
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCI 218

Query: 110 ----------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
                            D + + +V+ AC +L  L +GK +   +        + + NAL
Sbjct: 219 DGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNAL 278

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           +DM+AKC D+  A  +F  M  R +VSWTS+I G A HGR  EA+ L+++M+ A + P++
Sbjct: 279 VDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNE 338

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V FVGL+ ACSH GLV KGR+ F +M  D+ I P ++ + C +D+L RSG + EA + I+
Sbjct: 339 VTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIK 398

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP + +   W  L+SAC   G  ++   I  RL+       S YVLLS++YA   +WE+
Sbjct: 399 TMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQ 458

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
            +++R++M    +K+ PG + I+L  E   F  G+  H    EI+ +L E+  +M+K GY
Sbjct: 459 MSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGY 518

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           +P TS VL D+ E++KE  L  HSE+ A+A+ LLK  PGT IRIVKNLR+C DCH+  K 
Sbjct: 519 IPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKL 578

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
            S I ++EI+VRD  R+HHFKD
Sbjct: 579 TSSIVHKEIIVRDATRYHHFKD 600



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 50/340 (14%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +Y   LK C         K +H  ++K        + NTL+  YG C   ++    +FDE
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKC-NLLQDAHYLFDE 62

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEV 130
           M +RD VSW++++  Y +  L    + +F  M  +  + PD     T+L AC  L +L +
Sbjct: 63  MPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRL 122

Query: 131 GKWVES-FIEKQMVNRSVGLCNALIDMFAKCGDV-------------------------- 163
           GK V + F+    V+  V + ++L+DM+AKCG                            
Sbjct: 123 GKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYA 181

Query: 164 -----DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFV 217
                D+A++LF     R + SWT++I+GL   G  ++   +F EM   GV   D +   
Sbjct: 182 RSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLS 241

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEF 271
            ++ AC++  ++  G++         G++    +  C      +VDM  +   +  A   
Sbjct: 242 SVVGACANLAVLGLGKQI-------HGLVIGSGYESCLFISNALVDMYAKCSDILAARNV 294

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
             +M +  + + W ++I      G  K A  +  +++  E
Sbjct: 295 FNRM-LHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAE 333


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/480 (41%), Positives = 307/480 (63%), Gaps = 7/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML Y  + +   +  +L+  +  GDL+  + +  A+        + V  TLV++YG C G
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTV-VAGTLVNLYGKC-G 342

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R+V D M  R SVSW+AMI  YA+ G + +AI+LF+ M + G  P +IT+++V+ 
Sbjct: 343 RVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVD 402

Query: 121 ACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRT 177
           +C  LG L +GK + + I    + ++S+ L NA+I M+ KCG+++ A ++F S  +  R+
Sbjct: 403 SCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRS 462

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
           +V+WT++I   A +G G EA+ LF+EM ++ G  P+ V F+ +LSACSH G +++  E+F
Sbjct: 463 VVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHF 522

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPIIWRTLISACCARG 295
            SM  DFG+ P  +HY C+VD+L R+GR+ EA + + +    EA+ + W   +SAC   G
Sbjct: 523 CSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNG 582

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
           +L+ ++   KR+   EP + +  VLLS++YA   R     +IR  M   G+KK  G + I
Sbjct: 583 DLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWI 642

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E++N ++EF+  D SH +  EIY  L+ + R++K+AGYVP T  VL D++EE K   L  
Sbjct: 643 EINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGY 702

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSE+LA+A  ++ TPPGT +R+VKNLRVC+DCH+ATKFIS+I  R+I+VRD  RFHHFKD
Sbjct: 703 HSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKD 762



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++L +K FD M +RDS++++AM    +  G    A ++ R +       D I    +L
Sbjct: 246 GHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLS----AVDVIAWNALL 301

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
              +  G L+  + + S +E + V  +V +   L++++ KCG VD A ++  +M  RT V
Sbjct: 302 EGYSRTGDLDEVRRLFSAMEHRTVATTV-VAGTLVNLYGKCGRVDDARRVLDAMPVRTSV 360

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++IA  A +G   EA+ LF+ M   G  P D+  + ++ +C+  G +  G+     +
Sbjct: 361 SWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARI 420

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELK 298
           ++       +     ++ M  + G ++ A E  + +P+    ++ W  +I A    G  +
Sbjct: 421 RSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGE 480

Query: 299 LAESITKRLI---GNEPMHESNYVLLS 322
            A  + + ++   G EP   +   +LS
Sbjct: 481 EAIELFQEMVIDGGTEPNRVTFLSVLS 507



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 116/296 (39%), Gaps = 56/296 (18%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           ++ACA    L+  K +H  + +   GD+  + N L+ ++G C G  +  R VF+ +   +
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKC-GDPDAARAVFNRVRLPN 72

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
             SWS +I  Y       DA  LF  M                         +   W   
Sbjct: 73  EYSWSCIIQAYVSSSRIHDARALFDSMP----------------------GFDAFTW--- 107

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGL 195
                         N +I  +A+   +D A +LF  M +GR +VSW  ++AG A H R  
Sbjct: 108 --------------NIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLE 153

Query: 196 EAVALFEEMLEAGVPP--DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
           EA ALF  M      P  D V    +L   +H G + + +E FD +    G     +   
Sbjct: 154 EASALFRRM------PLWDTVTCTSVLQGYAHNGHLAEAQELFDRI----GGAGDRDATA 203

Query: 254 C--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           C  M+    ++ RV  A     ++ +  N   W  L+      G L LA+    R+
Sbjct: 204 CNAMIAAYGKNARVDLAEGLFAQIKLR-NAASWSLLLLTYAQNGHLDLAKKSFDRM 258



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N LID+F KCGD D A  +F  +      SW+ +I       R  +A ALF+ M    
Sbjct: 44  LTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSM---- 99

Query: 209 VPPDDVAFVG--LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             P   AF    +++A +    +D  RE F  M +   ++     +  +V    R  R++
Sbjct: 100 --PGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVS----WAILVAGYARHDRLE 153

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EA    ++MP+  + +   +++      G L  A+ +  R+ G
Sbjct: 154 EASALFRRMPLW-DTVTCTSVLQGYAHNGHLAEAQELFDRIGG 195


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/478 (39%), Positives = 295/478 (61%), Gaps = 14/478 (2%)

Query: 7   SPNKFTYPFVLKACAGI------GDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           +PN +TYP +L ACA +       +   G +VH ++ +      D  +  +++  Y +  
Sbjct: 90  NPNNYTYPPLLAACARLLPAHPPREAAAGTAVHASLFRRGLESRDRFISASMLSFYAAA- 148

Query: 60  GGIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           G +   R+VFD    ++RD   W++++  Y   GL T  + LFRQM    V  DE+T++ 
Sbjct: 149 GDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQM----VATDEVTLLA 204

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           V+SAC+ LGAL+ G+W  ++  +   N +  L  AL++M+ +CGDV+ A  +F  M  + 
Sbjct: 205 VVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKD 264

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           + +W+ +IAGLA++G   +A+ LF EM   GV PD +    +LSACSH G+VD+G+ +  
Sbjct: 265 VRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLH 324

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            M  ++ + P IEHYGC+VD+L R+G+++EA   I+ +P +A+  +W  L+ AC A   +
Sbjct: 325 CMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNV 384

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            + +     ++  +P H    V LS+ YA   +W+   ++R  M +  + K PGS+++EL
Sbjct: 385 DMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVEL 444

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           D  +YEF+ GD SH QS  IY MLDE+ + +   G+ P+T EV  DI+EEDKE  +++HS
Sbjct: 445 DGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHS 504

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLA+A  L+ T  G  IRIVKNLR+C DCHS  K +S++Y+R IVVRDR+RFHHFK+
Sbjct: 505 EKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKN 562


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/504 (41%), Positives = 296/504 (58%), Gaps = 35/504 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +SP++FT   VL ACA +  L +GK +H  ++   F     V N L+ MY  C GG+E  
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC-GGVETA 333

Query: 66  RK---------------------------------VFDEMSERDSVSWSAMIGGYARLGL 92
           R+                                 +F  + +RD V+W+AMI GY + G 
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             +AI+LFR M   G  P+  T+  +LS  + L +L  GK +     K     SV + NA
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453

Query: 153 LIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           LI M+AK G++  A + F  +   R  VSWTS+I  LA HG   EA+ LFE ML  G+ P
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           D + +VG+ SAC+H GLV++GR+YFD MK+   IIP + HY CMVD+  R+G ++EA EF
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I+KMPIE + + W +L+SAC     + L +   +RL+  EP +   Y  L+++Y+   +W
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E+  KIR+ M    +KK  G + IE+ ++++ F   D +H +  EIY  + ++  ++KK 
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           GYVP T+ VL D+ EE KE  L  HSEKLAIAF L+ TP  T +RI+KNLRVCNDCH+A 
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           KFISK+  REI+VRD  RFHHFKD
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKD 777



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 167/380 (43%), Gaps = 67/380 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
           M++ G+ P +FT   VL + A    +  GK VH  ++K     ++ V N+L++MY  C  
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 60  -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++L    F++M+ERD V+W++MI G+ + 
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G    A+D+F +M + S + PD  T+ +VLSAC +L  L +GK + S I     + S  +
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI M+++C                                 GD+++A  +F S+  R
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 376

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +V+WT++I G   HG   EA+ LF  M+  G  P+      +LS  S    +  G++  
Sbjct: 377 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 436

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S     G I  +     ++ M  ++G +  A      +  E + + W ++I A    G 
Sbjct: 437 GSAVKS-GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 297 LKLAESITKRLI--GNEPMH 314
            + A  + + ++  G  P H
Sbjct: 496 AEEALELFETMLMEGLRPDH 515



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  Y S  G ++   + FD++ +RDSVSW+ MI GY  +G    AI +   M   G+
Sbjct: 84  NTVLSAY-SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI 142

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD------ 162
            P + T+  VL++      +E GK V SFI K  +  +V + N+L++M+AKCGD      
Sbjct: 143 EPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKF 202

Query: 163 -------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
                                    +D A+  F  M  R IV+W S+I+G    G  L A
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262

Query: 198 VALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           + +F +ML ++ + PD      +LSAC++   +  G++    +      I  I     ++
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV-LNALI 321

Query: 257 DMLCRSGRVKEAHEFIQK 274
            M  R G V+ A   I++
Sbjct: 322 SMYSRCGGVETARRLIEQ 339



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN +T   +L   + +  L+ GK +HG+ +K      + V N L+ MY    G
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKA-G 462

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I    + FD +  ERD+VSW++MI   A+ G + +A++LF  M + G+ PD IT V V 
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SACT  G +  G+ + +   +   +  ++     ++D+F + G + +A +    M     
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+W S+++   +H + ++   +  E L    P +  A+  L +  S CG  ++  +   
Sbjct: 583 VVTWGSLLSACRVH-KNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641

Query: 238 SMKN 241
           SMK+
Sbjct: 642 SMKD 645



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           +M  R+    N ++  ++K GD+D   + F  +  R  VSWT++I G    G+  +A+ +
Sbjct: 74  EMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
             +M++ G+ P       +L++ +    ++ G++   S     G+   +     +++M  
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK-VHSFIVKLGLRGNVSVSNSLLNMYA 192

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + G    A     +M +  +   W  +I+     G++ LA
Sbjct: 193 KCGDPMMAKFVFDRMVVR-DISSWNAMIALHMQVGQMDLA 231



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 22/214 (10%)

Query: 109 CPDEITMVTVLSACTDLGALEV----GKWVESFIEKQMVNR----SVGLCNALIDMFAKC 160
            P  +++ T+L  CT+L    V    G++    +  +++      SV L N L+++++K 
Sbjct: 3   APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G    A KLF  M  RT  SW +V++  +  G        F+++ +     D V++  ++
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQ----RDSVSWTTMI 118

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV------KEAHEFIQK 274
               + G   K       M  + GI P       + ++L            K+ H FI K
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKE-GIEPT---QFTLTNVLASVAATRCMETGKKVHSFIVK 174

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           + +  N  +  +L++     G+  +A+ +  R++
Sbjct: 175 LGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV 208


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/440 (41%), Positives = 291/440 (66%), Gaps = 4/440 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE GV+P+ +T+  +LKACA       G+  HG  +K    D  +V  TL++MY  C G
Sbjct: 114 MLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAEC-G 172

Query: 61  GIELGRKVFDEMSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
                R +F  +   D V S++AMI    R     +A+ LFR+MQ  G+ P  +T+ +VL
Sbjct: 173 DARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVL 232

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LGALE+G+W+  ++ K  ++  V +  ALIDM+ KCG ++ A+ +F+ M  R   
Sbjct: 233 SACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQ 292

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W+ +I   A H  G EA++LFEEM + G+ PD V F+G+L ACSH G+V +G +YFDSM
Sbjct: 293 AWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSM 352

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + ++GI+P I+HYGC+ D+L RSG++++A++FI ++PI+   I+WRTL+SAC + G + L
Sbjct: 353 R-EYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDL 411

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            + + +R++  +  H S+YV+ S++ A   +WE+  ++R++M+++G+ K+PG + IE+DN
Sbjct: 412 GKRVFERILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDN 471

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSE 418
            ++EF  GD  H QS++   M+D++  ++K  GYVP TS+V  +++ EE+K  +L  HSE
Sbjct: 472 RVHEFFAGDGRHPQSQDARRMVDQVIEQLKLVGYVPNTSQVFHVEMGEEEKATSLRYHSE 531

Query: 419 KLAIAFALLKTPPGTPIRIV 438
           KLAI+F LL T PGT +R+V
Sbjct: 532 KLAISFGLLNTSPGTTLRVV 551



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 32  VHGAVLKFQFGDDIHVQN---TLVHMYGSCEGGIELGRKVFDEMSERDSVSW-SAMIGGY 87
           +H A +K   G    +     TL    G+    +   R+VFD +     V W + ++ GY
Sbjct: 38  LHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRGY 97

Query: 88  ARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           AR    + +A  +  +M   GV PD  T V++L AC    A E G+       K      
Sbjct: 98  ARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADH 157

Query: 147 VGLCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
             +   LI+M+A+CGD   A  +F R  NG  +VS+ ++I       R  EA+ LF EM 
Sbjct: 158 EYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQ 217

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ P  V    +LSAC+  G ++ GR   + ++   G+   ++    ++DM  + G +
Sbjct: 218 AKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKA-GLDSLVKVNTALIDMYGKCGSL 276

Query: 266 KEAHEFIQKM 275
           ++A +  Q M
Sbjct: 277 EDAIDVFQGM 286



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 118/320 (36%), Gaps = 64/320 (20%)

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           L  CT L AL     + +   K  +     L   L+ +  K G     L   R +  R  
Sbjct: 26  LPHCTSLRAL---AQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIP 82

Query: 178 ----IVSWTSVIAGLAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
               +V + +++ G A    G  EA  +   MLE GV PD   FV LL AC+     ++G
Sbjct: 83  TPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEG 142

Query: 233 R--------------EYF--------------DSMKNDFGIIPK---IEHYGCMVDMLCR 261
           R              EY                S +  FG +P    +  Y  M+    R
Sbjct: 143 RQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVR 202

Query: 262 SGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESITK--RLIGNEPMHES 316
           S R  EA    ++M    ++   +   +++SAC   G L+L   I +  R  G + + + 
Sbjct: 203 SSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKV 262

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE-FVCGDKSHHQSK 375
           N  L+  +Y K    E    + + M+ R             D + +   +    +H   +
Sbjct: 263 NTALID-MYGKCGSLEDAIDVFQGMESR-------------DRQAWSVMIVAYANHSYGR 308

Query: 376 EIYEMLDEMGRKMKKAGYVP 395
           E   + +E    MKK G  P
Sbjct: 309 EAISLFEE----MKKQGIRP 324


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/476 (40%), Positives = 296/476 (62%), Gaps = 3/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ PN+F    ++K C  +G    GK +HG   K+ F +++ V ++LV MY  C G
Sbjct: 186 MVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC-G 244

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFDE+  ++ VSW+A+I G+AR G   +A+ LF +MQ  G    E T   +L 
Sbjct: 245 ELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC 304

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           + +  G+LE GKW+ + + K        + N L+ M+AK G++  A K+F  +    +VS
Sbjct: 305 SSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVS 364

Query: 181 WTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
             S++ G A HG G EAV LFEEM L   + P+D+ F+ +L+ACSH GL+D+G  YF+ M
Sbjct: 365 CNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM 424

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K  +G+ PK+ HY  +VD+  R+G + +A  FI++MPIE N  IW  L+ A       ++
Sbjct: 425 KK-YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEM 483

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
                ++++  +P +   + LLS+IYA   +W+   K+R+ M   G+KK P  + +E++N
Sbjct: 484 GAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIEN 543

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++ F   D SH Q  ++YEM + + +K+K+ GYVP TS V + +++++KE  L  HSEK
Sbjct: 544 SVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEK 603

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AFALL T PG+ IRI+KN+RVC DCHSA K++S +  REI+VRD +RFHHF+D
Sbjct: 604 LALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRD 659



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 5/207 (2%)

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           ST  + +   +    + PD      +L  CT LG L+ GK V + +        + + N+
Sbjct: 72  STTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNS 131

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG---RGLEAVALFEEMLEAGV 209
           ++ M+AKCG ++ A ++F  M  + +V+WTS+I G +  G       A+ LF EM+  G+
Sbjct: 132 ILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL 191

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P++ A   L+  C   G    G++        +G    +     +VDM  R G ++E+ 
Sbjct: 192 RPNEFALSSLVKCCGFLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYARCGELRESR 250

Query: 270 EFIQKMPIEANPIIWRTLISACCARGE 296
               ++    N + W  LIS    +GE
Sbjct: 251 LVFDELE-SKNEVSWNALISGFARKGE 276


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/414 (44%), Positives = 271/414 (65%), Gaps = 5/414 (1%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           + +F +M ++  VSW+ MIG Y +  +  +A++L+ +M+  G  PD +++ +VL AC D 
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL +GK +  +IE++ +  ++ L NALIDM+AKCG ++KA  +F +M  R +VSWT++I
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMI 382

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +     GRG +AVALF ++ ++G+ PD +AFV  L+ACSH GL+++GR  F  M + + I
Sbjct: 383 SAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 442

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P++EH  CMVD+L R+G+VKEA+ FIQ M +E N  +W  L+ AC    +  +      
Sbjct: 443 TPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAAD 502

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L    P     YVLLS+IYAK  RWE+ T IR +M  +G+KK PG++ +E++  I+ F+
Sbjct: 503 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 562

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH QS EIY  LD + +KMK+ GYVP +   L D+ EEDKE  L  HSEKLAI FA
Sbjct: 563 VGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 622

Query: 426 LLKTP-----PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           L+ T          IRI KNLR+C DCH A K IS+I +REI++RD +RFH F+
Sbjct: 623 LMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+  +   VL AC     L+LGK +HG + + +   ++ ++N L+ MY  C G +E 
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC-GCLEK 362

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF+ M  RD VSW+AMI  Y   G   DA+ LF ++Q SG+ PD I  VT L+AC+ 
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422

Query: 125 LGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NGRTIV 179
            G LE G+     +     +   +     ++D+  + G V +A +  + M    N R   
Sbjct: 423 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV-- 480

Query: 180 SWTSVIAGLAMHGRG----LEAVALFEEMLEAGVPPDDVAFVGLLS 221
            W +++    +H       L A  LF+      + P+   +  LLS
Sbjct: 481 -WGALLGACRVHSDTDIGLLAADKLFQ------LAPEQSGYYVLLS 519



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 16/328 (4%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           D+   ++VH  ++      +  +   L+  Y S +  +   RKVFDE+ ER+ +  + MI
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKD-VASARKVFDEIPERNVIIINVMI 112

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
             Y   G   + + +F  M    V PD  T   VL AC+  G + +G+ +     K  ++
Sbjct: 113 RSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLS 172

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
            ++ + N L+ M+ KCG + +A  +   M+ R +VSW S++ G A + R  +A+ +  EM
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
               +  D      LL A S+     +   Y   M    G    +  +  M+ +  ++  
Sbjct: 233 ESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAM 289

Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI-----TKRLIGNEPMHES 316
             EA E   +M     E + +   +++ AC     L L + I      K+LI N  +  +
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344
               L  +YAK    EK   + E M  R
Sbjct: 350 ----LIDMYAKCGCLEKARDVFENMKSR 373


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 292/470 (62%), Gaps = 7/470 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   VL   A   +L  GK +HG  ++  +  D+ + ++L+ MY  C   ++  
Sbjct: 192 LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTR-VDDS 250

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF  + + D +SW+++I G  + G+  + +  F+QM I+ + P+ ++  +++ AC  L
Sbjct: 251 CRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHL 310

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +GK +  +I +   + +V + +AL+DM+AKCG++  A  +F  M    +VSWT++I
Sbjct: 311 TTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMI 370

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A+HG   +A++LF+ M   GV P+ VAF+ +L+ACSH GLVD+  +YF+SM  D+ I
Sbjct: 371 MGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 430

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           IP +EHY  + D+L R GR++EA+EFI  M IE    +W TL++AC     ++LAE ++K
Sbjct: 431 IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSK 490

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +L   +P +   YVLLS+IY+   RW+   K+R  M  +GMKK P  + IE+ N+++ FV
Sbjct: 491 KLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFV 550

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GDKSH     I E L  +  +M++ GYV  T+EVL D+ EE K   L  HSE+LAI F 
Sbjct: 551 AGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFG 610

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++ TP GT IR+ KNLRVC DCH+ATKFISKI  REIV      F+ F D
Sbjct: 611 IISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIV------FYFFLD 654



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 8/245 (3%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVF+ M +RD VSW+ +I G A+ G+  DA+ + R+M  + + PD  T+ +VL    + 
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  GK +  +  +   +  V + ++LIDM+AKC  VD + ++F  +     +SW S+I
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKND 242
           AG   +G   E +  F++ML A + P+ V+F  ++ AC+H   +  G++   Y    + D
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
             +         +VDM  + G ++ A     KM +  + + W  +I      G    A S
Sbjct: 330 GNVFIA----SALVDMYAKCGNIRTARWIFDKMEL-YDMVSWTAMIMGYALHGHAYDAIS 384

Query: 303 ITKRL 307
           + KR+
Sbjct: 385 LFKRM 389



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 129/243 (53%), Gaps = 4/243 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN  ++  ++ ACA +  L+LGK +HG +++ +F  ++ + + LV MY  C G
Sbjct: 288 MLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKC-G 346

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   R +FD+M   D VSW+AMI GYA  G + DAI LF++M++ GV P+ +  + VL+
Sbjct: 347 NIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLT 406

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G + E  K+  S  +   +   +    A+ D+  + G +++A +    M+     
Sbjct: 407 ACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTG 466

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           S W++++A   +H + +E      + L    P +  A+V L +  S  G     R+   +
Sbjct: 467 SVWSTLLAACRVH-KNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIA 525

Query: 239 MKN 241
           M++
Sbjct: 526 MRD 528



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 136/304 (44%), Gaps = 37/304 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+   +P VLK+C  + DL  G+SVHG +++   G D++  N L++MY     
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYA---RLGLSTDAIDLFRQM--QISGV--CPDEI 113
             E G + F +         S M+GG      +G  +++ DL  ++  +++G+    D  
Sbjct: 61  LEEGGVQRFCD---------SKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLN 111

Query: 114 TMVTVL-SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            M  +L    T     + GK  + + +K+  +  +G                   K+F  
Sbjct: 112 QMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLG----------------SLRKVFEM 155

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           M  R IVSW +VI+G A +G   +A+ +  EM  A + PD      +L   +    + KG
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 215

Query: 233 REYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           +E    +++N +     I     ++DM  +  RV ++      +P + + I W ++I+ C
Sbjct: 216 KEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 272

Query: 292 CARG 295
              G
Sbjct: 273 VQNG 276


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/485 (43%), Positives = 302/485 (62%), Gaps = 19/485 (3%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY----- 55
            M+  G+ PNK T+  +L A + +  L LGK VH AV+K    +D  V N L+  Y     
Sbjct: 574  MMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGD 633

Query: 56   -GSCEGGIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113
             GSCE        +F  MS+R D++SW++MI GY   G   +A+D    M  SG   D  
Sbjct: 634  MGSCE-------HLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCC 686

Query: 114  TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            T   +L+AC  + ALE G  + +F  +  +   V + +AL+DM++KCG VD A KLF SM
Sbjct: 687  TFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSM 746

Query: 174  NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
              R   SW S+I+G A HG G +A+ +FEEML +   PD V FV +LSACSH GLV++G 
Sbjct: 747  TQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGL 806

Query: 234  EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
            EYF+ M  D GI+P+IEHY C++D+L R+G++ +  E+IQ+MPIE N +IWRT++ AC  
Sbjct: 807  EYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQ 865

Query: 294  R---GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350
                  + L    ++ L+  EP +  NYVL S+ +A    WE   K R  M +   KK  
Sbjct: 866  SKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEA 925

Query: 351  GSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKE 410
            G + + L++ ++ F+ GD+SH  +KEIYE L+ + + ++ AGYVP T   L D+ EE+KE
Sbjct: 926  GRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKE 985

Query: 411  DALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRF 470
            + L+ HSEKLAIAF L ++  G PIRI+KNLRVC DCH A ++IS++ +R+I++RD  RF
Sbjct: 986  ELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRF 1044

Query: 471  HHFKD 475
            HHFKD
Sbjct: 1045 HHFKD 1049



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 141/302 (46%), Gaps = 10/302 (3%)

Query: 6   VSPNKFTYPFVLKACAGIG----DLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEG 60
           V  N  TY  +L A A        L +G+ VHG +L+    D  I V N LV+MY  C G
Sbjct: 371 VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKC-G 429

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE   K+F  M   D +SW+ +I    + G   +A+  +  M+ S + P    +++ LS
Sbjct: 430 AIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLS 489

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  L  L  G+ V     K  ++    + N L+ M+ +CG +    K+F SM     VS
Sbjct: 490 SCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVS 549

Query: 181 WTSVIAGLAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS- 238
           W +++  +A     + E V +F  M+  G+ P+ V F+ LL+A S   +++ G++   + 
Sbjct: 550 WNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAV 609

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           MK+  G++        ++    +SG +         M    + I W ++IS     G L+
Sbjct: 610 MKH--GVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667

Query: 299 LA 300
            A
Sbjct: 668 EA 669



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 15/335 (4%)

Query: 2   LEYGVSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ++ G  P  FT+  +L+AC   G   L     VHG V K ++  +  V N L+ MYGSC 
Sbjct: 157 VQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCT 216

Query: 60  GGIE-LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG----VCPDEIT 114
            G   L ++VFD    RD ++W+A++  YA+ G       LF+ MQ       + P E T
Sbjct: 217 VGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHT 276

Query: 115 MVTVLSACTDLGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
             ++++A +       V   V  ++ K   +  + + +AL+  FA+ G  D+A  +F S+
Sbjct: 277 FGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSL 336

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK-- 231
             +  V+   +I GL       EAV +F       V  +   +V LLSA +   + ++  
Sbjct: 337 KQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTYVVLLSALAEYSISEEGL 395

Query: 232 --GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GR     M        KI     +V+M  + G ++ A +  Q M    + I W T+IS
Sbjct: 396 RIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLME-ATDRISWNTIIS 454

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
           A    G  + A  +   L+    +  SN+ L+S +
Sbjct: 455 ALDQNGNCEEA-VMHYSLMRQSCISPSNFALISSL 488



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 8/188 (4%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           GD N  +++H  ++K     D+ + N LV+ Y      +    +VFDEM ER++VSW+ +
Sbjct: 75  GDANSPENLHVELIKRGLNHDLFLCNHLVNSYAK-GARLAAASQVFDEMPERNAVSWTCL 133

Query: 84  IGGYARLGLSTDAIDLFRQM--QISGVC-PDEITMVTVLSACTDLGALEVGKWVE--SFI 138
           + GY   G++ +A  +FR M  ++   C P   T  T+L AC D G   +G  V+    +
Sbjct: 134 VSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLV 193

Query: 139 EKQMVNRSVGLCNALIDMFAKC--GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            K     +  +CNALI M+  C  G    A ++F     R +++W ++++  A  G    
Sbjct: 194 SKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVAS 253

Query: 197 AVALFEEM 204
              LF++M
Sbjct: 254 TFTLFKDM 261



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 17/169 (10%)

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K+ +N  + LCN L++ +AK   +  A ++F  M  R  VSWT +++G  +HG   EA  
Sbjct: 89  KRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFR 148

Query: 200 LFEEML---EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY---- 252
           +F  ML   +AG  P    F  LL AC      D G +         G++ K E+     
Sbjct: 149 VFRAMLREVQAGCRPTSFTFGTLLRACQ-----DGGPDRLGFAVQVHGLVSKTEYASNTT 203

Query: 253 --GCMVDML--CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
               ++ M   C  G    A       PI  + I W  L+S    +G++
Sbjct: 204 VCNALISMYGSCTVGPPILAQRVFDGTPIR-DLITWNALMSVYAKKGDV 251


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/505 (38%), Positives = 308/505 (60%), Gaps = 31/505 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M++ G+ P++ +    + +C+ + ++  GKS HG VL+  F    ++ N L+ MY  C  
Sbjct: 327 MMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHR 386

Query: 59  ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
                                        G ++   + F+ M E++ VSW+ +I    + 
Sbjct: 387 QDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQE 446

Query: 91  GLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            +  +AI++F  MQ    V  D +TM+++ SAC  LGAL++ KW+  +IEK  +   V L
Sbjct: 447 NMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRL 506

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              L+DMF++CGD + A+ +F S+  R + +WT+ I  +AM G    A+ LF EM+E G+
Sbjct: 507 GTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGL 566

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD V F+G L+AC H GLV +G+E F+SM+   G+ P+  HYGCMVD+L R+G ++EA 
Sbjct: 567 KPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEAL 626

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           + I+ MP E N +IW +L++AC  +G +++A    +++    P    +YVLLS++YA   
Sbjct: 627 QLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAG 686

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           RW    K+R  M ++G++K PG+++I++  + +EF  GD+SH + ++I  MLDE+ ++  
Sbjct: 687 RWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRAS 746

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             G+VP  S VL+D++E++K   L++HSEKLA+AF L+ +  GT IRIVKNLRVC+ CHS
Sbjct: 747 DLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHS 806

Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
             KF SK+YNREI++RD +RFH  +
Sbjct: 807 FAKFASKVYNREIILRDNNRFHFIR 831



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 168/321 (52%), Gaps = 33/321 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SP+K+T+PF L  CA   D   G  +HG ++K  +  D+ VQN+LVH Y  C G
Sbjct: 124 MMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAEC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVL 119
            ++  RKVFDEMSER+ VSW++MI GYAR   + DA+DLF R ++   V P+ +TMV V+
Sbjct: 183 ELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVI 242

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  L  LE G+ V  FI    +  +  + +AL+DM+ KC  +D A +LF       + 
Sbjct: 243 SACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLD 302

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGL 228
              ++ +     G   EA+ +   M+++G+ PD ++ +  +S+CS           H  +
Sbjct: 303 LCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYV 362

Query: 229 VDKGREYFDSMKN--------------DFGIIPKIEH-----YGCMVDMLCRSGRVKEAH 269
           +  G E +D++ N               F I  ++ +     +  +V     +G V  A 
Sbjct: 363 LRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAW 422

Query: 270 EFIQKMPIEANPIIWRTLISA 290
           E    MP E N + W T+ISA
Sbjct: 423 ETFNTMP-EKNIVSWNTIISA 442



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 5/236 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN  T   V+ ACA + DL  G+ V+  +       +  + + LV MY  C   I++ 
Sbjct: 231 VIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKC-NAIDIA 289

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           +++FDE    +    +AM   Y R GL+ +A+ +   M  SG+ PD I+M++ +S+C+ L
Sbjct: 290 KRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQL 349

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             +  GK    ++ +        +CNALIDM+ KC   D A ++F  M+ +T+V+W S++
Sbjct: 350 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 409

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           AG   +G    A   F  M E  +    V++  ++SA     + ++  E F  M++
Sbjct: 410 AGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVFHYMQS 461



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 12/251 (4%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVF 69
           P  LK C  I +L   K  H ++ K    DD+     LV    SCE G    +   ++VF
Sbjct: 35  PSSLKNCKTIDEL---KMFHLSLTKQGLDDDVSAITKLVAR--SCELGTRESLSFAKEVF 89

Query: 70  DE-MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           +   S      ++++I GYA  GL  +AI LF +M  SG+ PD+ T    LS C      
Sbjct: 90  ENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDK 149

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             G  +   I K    + + + N+L+  +A+CG++D A K+F  M+ R +VSWTS+I G 
Sbjct: 150 GNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGY 209

Query: 189 AMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           A      +AV LF  M+ +  V P+ V  V ++SAC+    ++ G + +D ++ D GI  
Sbjct: 210 ARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIR-DSGIEV 268

Query: 248 KIEHYGCMVDM 258
                  +VDM
Sbjct: 269 NDLMISALVDM 279


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/476 (40%), Positives = 291/476 (61%), Gaps = 7/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ PN  TY  +LKACA +GD + G+ +H   +K    D   V N LV MY    G
Sbjct: 351 MLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAE-SG 409

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R  FD++ E++ VS+S  + G  R     D      Q++   +     T  +++S
Sbjct: 410 SIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLIS 464

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +G L  G+ + +   K        + N+L+ M+++CG +  A ++F  MN   ++S
Sbjct: 465 AAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVIS 524

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I+GLA HG    A+ LF +M+ AGV P+DV ++ +LSACSH GLV +G+E+F  M+
Sbjct: 525 WTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQ 584

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G+IP++EHY CMVD+L RSG V++A +FI +MP + + ++W+TL+ AC     + + 
Sbjct: 585 KHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIG 644

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     +I  EP   + YVLLS++YA+   W++  +IR +M  + + K  G + + +DN 
Sbjct: 645 EIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNT 704

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+EF  GD SH Q++EIY  L+ + R++K  GYVP TS VL D+++E KE  L +HSEK+
Sbjct: 705 IHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKI 764

Query: 421 AIAFALLKTPPGT-PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+     T PIRI KNLRVC DCHSA K++SK   REI++RD +RFH  KD
Sbjct: 765 AVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKD 820



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 151/280 (53%), Gaps = 11/280 (3%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNL-GKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           LE G+ PN FT     +AC      +L G +V G V K  F G D+ V   L+ M+    
Sbjct: 144 LEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAK-N 202

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R+VFD + ER  V W+ +I  YA+ G S +A++LF  M  +G  PD+ T+ ++L
Sbjct: 203 GDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSML 262

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD---VDKALKLFRSMNGR 176
           SACT+LG+  +G+ + S   +  +     +   L+DM+AK  +   +  A ++F  M   
Sbjct: 263 SACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKH 322

Query: 177 TIVSWTSVIAGLAMHG-RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
            +++WT++++G    G +  + + LF +ML  G+ P+ + +  +L AC++ G  D GR+ 
Sbjct: 323 NVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI 382

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA-HEFIQ 273
           +   +K++   +  + +   +V M   SG ++EA H F Q
Sbjct: 383 HTHCVKSNLADLNVVGN--ALVSMYAESGSIEEARHAFDQ 420



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 167/356 (46%), Gaps = 16/356 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G  P+++T   +L AC  +G   LG+ +H   L+     D  V   LV MY     
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHN 305

Query: 61  GIEL--GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI-DLFRQMQISGVCPDEITMVT 117
           G  L   R+VF+ M + + ++W+A++ GY + G   + +  LF +M   G+ P+ IT  +
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSS 365

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L AC +LG  + G+ + +   K  +     + NAL+ M+A+ G +++A   F  +  + 
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKN 425

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYF 236
           +VS++  + G    GR         E +E G+      F  L+SA +  G++ KG R + 
Sbjct: 426 MVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAASVGMLTKGQRLHA 480

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            S+K  FG    I +   +V M  R G + +A +   +M  + N I W ++IS     G 
Sbjct: 481 LSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKHGY 537

Query: 297 LKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350
              A  +   +I  G +P   +   +LS      L  E K   R +    G+  IP
Sbjct: 538 AARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGL--IP 591



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           + N+L+ +++KC  V  A  +F  M    R +VSWT++ + L+ +G   EA+ LF E LE
Sbjct: 86  VANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLE 145

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRV 265
            G+ P+         AC    L          +    G        GC ++DM  ++G +
Sbjct: 146 EGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDL 205

Query: 266 KEAHEFIQKMPIEANPIIWRTLIS 289
                    +  E   ++W  LI+
Sbjct: 206 VAMRRVFDGL-FERTVVVWTLLIT 228


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/476 (44%), Positives = 296/476 (62%), Gaps = 5/476 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M++ G  PN+ T+  +L A + +  L LG+ +H  +LK    DD  ++NTL+  YG CE 
Sbjct: 549  MMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQ 608

Query: 61   GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +E    +F  MSER D VSW+AMI GY   G+   A+ L   M   G   D+ T+ TVL
Sbjct: 609  -MEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVL 667

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            SAC  +  LE G  V +   +  +   V + +AL+DM+AKCG +D A + F  M  R I 
Sbjct: 668  SACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIY 727

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            SW S+I+G A HG G +A+ LF +M + G  PD V FVG+LSACSH GLVD+G E+F SM
Sbjct: 728  SWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSM 787

Query: 240  KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG--EL 297
               + + P+IEH+ CMVD+L R+G VK+  EFI+ MP+  N +IWRT++ ACC       
Sbjct: 788  GEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNT 847

Query: 298  KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            +L     K LI  EP++  NYVLLS+++A   +WE   + R  M    +KK  G + + +
Sbjct: 848  ELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTM 907

Query: 358  DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
             + ++ FV GD++H + ++IY+ L E+  KM+  GYVP T   L D+  E+KE+ L+ HS
Sbjct: 908  KDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHS 967

Query: 418  EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            EKLAIAF L +     PIRI+KNLRVC DCH+A K+IS I NR+I++RD +RFHHF
Sbjct: 968  EKLAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHF 1022



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 5/297 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+KF+    L +CA +G + LG+ +HG  +K     D+ V N L+ +Y   + 
Sbjct: 447 MRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETD- 505

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQMQISGVCPDEITMVTVL 119
            +E  +KVF  M E D VSW++ IG  A    S   AI  F +M  +G  P+ +T + +L
Sbjct: 506 CMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINIL 565

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI- 178
           SA + L  LE+G+ + + I K  V     + N L+  + KC  ++    +F  M+ R   
Sbjct: 566 SAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDE 625

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW ++I+G   +G   +A+ L   M++ G   DD     +LSAC+    +++G E   +
Sbjct: 626 VSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGME-VHA 684

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                 +  ++     +VDM  + G++  A  F + MP+  N   W ++IS     G
Sbjct: 685 CAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHG 740



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ++  G+ PN +     L+AC  +G   L LG  +HG + K  +  D+ + N L+ MY  C
Sbjct: 131 IISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHC 190

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV---C-PDEIT 114
              I+  R+VF+E+  + S SW+++I  Y R G +  A  LF  MQ       C P+E T
Sbjct: 191 SASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYT 250

Query: 115 ---MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
              +VTV  +  D G L + + + + IEK    + + + +AL+  FA+ G +D A  +F 
Sbjct: 251 FCSLVTVACSLVDCG-LTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFE 309

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD- 230
            M+ R  V+   ++ GLA   +G EA  +F+EM +  V  +  ++  LLSA +    +  
Sbjct: 310 QMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKE 368

Query: 231 ---KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
              KG+E    +  +  +   I     +V++  +   +  A    Q MP   + + W ++
Sbjct: 369 GKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMP-SKDTVSWNSI 427

Query: 288 IS 289
           IS
Sbjct: 428 IS 429



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 149/322 (46%), Gaps = 19/322 (5%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  + K     D+   NTLV+++    G +   +K+FDEM +++ VSWS ++ GYA+ G
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRA-GNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA--LEVGKWVESFIEKQMVNRSVGL 149
           +  +A  LFR +  +G+ P+   + + L AC +LG   L++G  +   I K      + L
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 150 CNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM---- 204
            N L+ M++ C   +D A ++F  +  +T  SW S+I+     G  + A  LF  M    
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-----KNDFGIIPKIEHYGCMVDML 259
            E    P++  F  L++    C LVD G    + M     K+ F  +  +     +V   
Sbjct: 240 TELNCRPNEYTFCSLVTVA--CSLVDCGLTLLEQMLARIEKSSF--VKDLYVGSALVSGF 295

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            R G +  A    ++M  + N +    L+     + + + A  I K +     ++ S+Y 
Sbjct: 296 ARYGLIDSAKMIFEQMD-DRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYA 354

Query: 320 LLSHIYAKLLRW-EKKTKIREV 340
           +L   + +     E K K +EV
Sbjct: 355 VLLSAFTEFSNLKEGKRKGQEV 376



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGK----SVHGAVLKFQFGDD-IHVQNTLVHMYGSCEG 60
           V  N  +Y  +L A     +L  GK     VH  +++    D  I + N LV++Y  C  
Sbjct: 346 VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKC-N 404

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R +F  M  +D+VSW+++I G        +A+  F  M+ +G+ P + ++++ LS
Sbjct: 405 AIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLS 464

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LG + +G+ +     K  ++  V + NAL+ ++A+   +++  K+F  M     VS
Sbjct: 465 SCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVS 524

Query: 181 WTSVIAGLAM-HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           W S I  LA      L+A+  F EM++AG  P+ V F+ +LSA S   L++ GR+
Sbjct: 525 WNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQ 579


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 289/476 (60%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + P  F +   LKACA + +L +G+ VH  V+K   G D  V N L+ +Y  CE 
Sbjct: 21  MLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCEC 80

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E+  KVFD+M ER+  SW+++I G+ +     +A+D+FR+MQ  G+    +T+ T+L 
Sbjct: 81  FNEV-LKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILP 139

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  + AL  GK + + I K      V + N+L+DM+ KCG VD   +LF  M  + + S
Sbjct: 140 ICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTS 199

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G A++G    A+ LF EM   G+ PDDV F+ LLS CSH GL + G++ F  M+
Sbjct: 200 WNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRME 259

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DFG+ P +EHY C+VDML R+GR+  A   ++ MP++ +  IW +L+++C    E+ LA
Sbjct: 260 MDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLA 319

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E+I  RL   EP +  NYV+LS+IYA    W+    +RE+M  R ++K  G + I++ N+
Sbjct: 320 EAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNK 379

Query: 361 IYEFVCGDK-SHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           I+ FV G       S E  ++ +++   M++ GY+P T  VL D+NEE K   +  HSE+
Sbjct: 380 IHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSER 439

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA  F+L+ T  G PIRI KNLRVC DCHS  K +S++  R IV+RD +RFHHFK+
Sbjct: 440 LATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKE 495



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 128/322 (39%), Gaps = 49/322 (15%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           M  GY++ G   +A+ ++ +M  + + P      T L AC DL  L VG+ V + + K  
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
                 + N L+ ++ +C   ++ LK+F  M  R + SW S+I+G     +  EA+ +F 
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 203 EMLEAGVPPDDVAFVGLLSACSH-----------------------------------CG 227
            M   G+    V    +L  C+                                    CG
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCG 180

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIW 284
           +VD GR  FD M++       +  +  M+     +G ++ A +   +M    I  + + +
Sbjct: 181 VVDYGRRLFDGMRSK-----DLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTF 235

Query: 285 RTLISACCARGELKLAESITKRL---IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
             L+S C   G  +  + +  R+    G  P  E +Y  L  +  +  R +    + + M
Sbjct: 236 IALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLE-HYACLVDMLGRAGRIDAALVVVKNM 294

Query: 342 DKRGMKKIPGSTL--IELDNEI 361
             +    I GS L    L NE+
Sbjct: 295 PMKTSGSIWGSLLNSCRLHNEV 316


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/474 (39%), Positives = 290/474 (61%), Gaps = 3/474 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
            E  V PN+ T   ++ AC+G   L+ GK +HG  +K     ++ V N+L++MYG   G 
Sbjct: 131 FEMSVKPNEVTILSMISACSGA--LDAGKYIHGFGIKVGGTLEVKVANSLINMYGK-SGD 187

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    ++F+ + + ++VSW+++I      G + + ID F +M+  G+  DE T++ +L A
Sbjct: 188 LTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQA 247

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  LG  ++ + +   +        + +  AL+D +AK G +  +  +F  +     V+W
Sbjct: 248 CLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAW 307

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T+++AG A HG G EA+ LFE M   G+ PD V F  LLSACSH GLV++G+ YF+ M  
Sbjct: 308 TAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSE 367

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            +GI P+++HY CMVD+L R G + +A+E IQ MP+E N  +W  L+ AC   G ++L +
Sbjct: 368 VYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGK 427

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            + + LI  EP+   NY++LS++Y+    W+   K+R ++ +RG+K+ PG + IE  N+ 
Sbjct: 428 EVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKN 487

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD+SH ++++IY  L+E+  K++KAGY   T  VL D+ EE KED +NKHSEKLA
Sbjct: 488 HHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLA 547

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           IAF LL +  G  + I KNLR+C DCHS  K IS I  R I++RD  RFHHF D
Sbjct: 548 IAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSD 601



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 150/299 (50%), Gaps = 16/299 (5%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           + +H  V K     D  + + LV  Y    G  E   K+FD+M  +D VSW+++I G++R
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKL-GYAEDALKLFDDMPHKDLVSWNSLISGFSR 117

Query: 90  -LGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            L +S  A   F  M+    V P+E+T+++++SAC+  GAL+ GK++  F  K      V
Sbjct: 118 CLHMSLTA---FYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEV 172

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + N+LI+M+ K GD+  A +LF ++     VSW S+IA    +G   E +  F +M   
Sbjct: 173 KVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRL 232

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+  D+   + LL AC H G V K  E    +    G   KI     ++D   + GR+  
Sbjct: 233 GIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSA 291

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG----ELKLAESITKRLIGNEPMHESNYVLLS 322
           ++    ++   A+ + W  +++   A G     +KL ES+  +  G EP H +   LLS
Sbjct: 292 SYGVFTEVGF-ADRVAWTAMLAGYAAHGLGREAIKLFESMANK--GLEPDHVTFTHLLS 347



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+  ++ T   +L+AC  +G   L +S+HG +    FG  I +   L+  Y    G
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKL-G 287

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF E+   D V+W+AM+ GYA  GL  +AI LF  M   G+ PD +T   +LS
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +  GK +     E   +   V   + ++D+  +CG ++ A ++ ++M      
Sbjct: 348 ACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNA 407

Query: 180 S-WTSVIAGLAMHG 192
             W +++    +HG
Sbjct: 408 GVWGALLGACRVHG 421



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 99  LFRQMQISGVCPDEITMVT-VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           L R   +   C     +V+ +L A     ++   + + + + K ++ R   + + L+  +
Sbjct: 25  LHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCY 84

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA--MHGRGLEAVALFEEMLEAGVPPDDVA 215
            K G  + ALKLF  M  + +VSW S+I+G +  +H   +   A +    E  V P++V 
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH---MSLTAFYTMKFEMSVKPNEVT 141

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            + ++SACS  G +D G+ Y        G   +++    +++M  +SG +  A    + +
Sbjct: 142 ILSMISACS--GALDAGK-YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 276 PIEANPIIWRTLISACCARG 295
           P + N + W ++I+A    G
Sbjct: 199 P-DPNTVSWNSIIAAQVTNG 217


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/471 (40%), Positives = 298/471 (63%), Gaps = 2/471 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN++T   VL +C+G   +  GK VH  ++K  F   + V ++L+ MY   E 
Sbjct: 134 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 193

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R+VFD + ERD VS +A+I GYA+ GL  +A+DLFRQ+   G+  + +T  T+++
Sbjct: 194 -IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 252

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L +L+ GK V + I ++ +   V L N+LIDM++KCG +  + ++F +M  R++VS
Sbjct: 253 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 312

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G   HG G E ++LF++ L   V PD V  + +LS CSH GLVD+G + FD++ 
Sbjct: 313 WNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 371

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +   +    HYGC++D+L RSGR+++A   I+ MP E+ P IW +L+ AC     + + 
Sbjct: 372 KEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVG 431

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + ++L+  EP +  NYV+LS+IYA    W+   K+R++M ++ + K PG + I LD  
Sbjct: 432 ELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 491

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F   ++ H   K+I   + E+   +K AG+VP  S VL D+++E KE  L  HSEKL
Sbjct: 492 IHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKL 551

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           AI F L+ TPPG  IR++KNLR+C DCH+  KF+SK+Y REI +RD++RFH
Sbjct: 552 AITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFH 602



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 149/285 (52%), Gaps = 5/285 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S     Y   + AC     L  G+ VH  ++  ++   + +   LV MY  C G ++ 
Sbjct: 37  GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRC-GALDD 95

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R V D M ER  VSW+ MI GY++     +A+DLF +M  +G  P+E T+ TVL++C+ 
Sbjct: 96  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 155

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             ++  GK V S + K      + + ++L+DM+AK  ++ +A ++F ++  R +VS T++
Sbjct: 156 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 215

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I+G A  G   EA+ LF ++   G+  + V F  L++A S    +D G++ +   ++ + 
Sbjct: 216 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 275

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                +++   ++DM  + G++  +      M +E + + W  ++
Sbjct: 276 PFFVALQN--SLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNAML 317


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/476 (40%), Positives = 295/476 (61%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ FT   +L AC+ I  L LGK VHG +++ +   D  V  +L+ +Y  C G
Sbjct: 485 MKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHC-G 543

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     +FD M ++  VSW+ M+ GY + G    A+ LFRQM + GV P EI+M++V  
Sbjct: 544 ELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFG 603

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L +L +G+    +  K ++  +  +  ++IDM+AK G V ++ K+F  +  R++ S
Sbjct: 604 ACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVAS 663

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G  +HGR  EA+ LFEEM   G  PD++ F+G+L+AC+H GLV +G  Y D MK
Sbjct: 664 WNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMK 723

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF-IQKMPIEANPIIWRTLISACCARGELKL 299
             FG+ P ++HY C++DML R+G++ EA +   ++M  E    IW  L+S+C     L++
Sbjct: 724 TLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEM 783

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E I  +L  +EP    NYVLLS++YA   +W++  K+R+ M +  ++K  G + IEL+ 
Sbjct: 784 GEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNG 843

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ FV G+ S    +EI  +   + R++ K GY P TS V  D++EE+K + L  HSEK
Sbjct: 844 KVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEK 903

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI + L++T  GT +R+ KNLR+C DCH+A K ISK+  REIVVRD  RFHHFK+
Sbjct: 904 LAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 959



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+ FT+P V+KACAG+ ++ +G +VHG V+K +  +D+ V N LV  YG+  G +
Sbjct: 177 ESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGT-NGSV 235

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCPDEITMVTV 118
               +VF  M ER+ VSW++MI  ++  GLS +   L  QM          PD  T+ TV
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L  C     + VGK V     K  +++ V + NAL+DM++KCG ++ A  +F+  N + +
Sbjct: 296 LPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSAC 223
           VSW +++ G +  G   +   L  +ML  G  +  D+V  +  +  C
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 139/277 (50%), Gaps = 14/277 (5%)

Query: 30  KSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           K +H   LK +F  ++  V N  V  Y  C G +    +VF  +  +   SW+A+IGGY+
Sbjct: 412 KELHCYSLKQEFVHNNELVANAFVASYAKC-GSLSYAHRVFCSIRSKTVNSWNALIGGYS 470

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           +      ++D + QM+ SG+ PD  T+ ++LSAC+ + +L++GK V   I +  + R   
Sbjct: 471 QSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSF 530

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  +L+ ++  CG++  A  LF +M  +T+VSW +++ G   +G    A++LF +M+  G
Sbjct: 531 VYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYG 590

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGRE----YFDSMKNDFGIIPKIEHYGC-MVDMLCRSG 263
           V P +++ + +  ACS    +  GRE        +  D   I       C ++DM  ++G
Sbjct: 591 VQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFI------ACSVIDMYAKNG 644

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            V E+ +    +  E +   W  ++      G  K A
Sbjct: 645 SVMESFKVFNGLK-ERSVASWNAMVMGYGIHGRAKEA 680



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 25  DLNLGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           D+ LG+ +H  V +  +  +D  +   ++ MY  C G  +  R VFD + +++   W+A+
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMC-GSPDDSRSVFDALRKKNLFQWNAV 154

Query: 84  IGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           I  Y+R  L  + +++F +M   SG+ PD  T   V+ AC  +  ++VG  V   + K  
Sbjct: 155 ISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTR 214

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +   V + NAL+  +   G V  AL++F+ M  R +VSW S+I   + +G   E   L  
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 203 EMLEA----GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
           +M+E        PD      +L  C+    +  G+     +     +  ++     ++DM
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKG-VHGLAMKLSLDKEVVVNNALMDM 333

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
             + G + +A + I K+    N + W T++    A G++     + ++++ 
Sbjct: 334 YSKCGCINDA-QVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLA 383


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 289/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G     F +  +L   A +  L +G+ +H   L       +HV N+LV MY  CE   E 
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM-FEE 404

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F  + +R +VSW+A+I GY + GL    + LF +M+ S +  D+ T  TVL A   
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASAS 464

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             +L +GK + +FI +     +V   + L+DM+AKCG +  A+++F  M  R  VSW ++
Sbjct: 465 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNAL 524

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  A +G G  A+  F +M+E+G+ PD V+ +G+L+ACSHCG V++G EYF +M   +G
Sbjct: 525 ISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYG 584

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I PK +HY CM+D+L R+GR  EA + + +MP E + I+W ++++AC       LAE   
Sbjct: 585 ITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAA 644

Query: 305 KRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
           ++L   E + + + YV +S+IYA    WEK   +++ M +RG+KK+P  + +E++++I+ 
Sbjct: 645 EKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHV 704

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F   D++H    EI   ++E+  ++++ GY P TS V+ D++E+ K ++L  HSE+LA+A
Sbjct: 705 FSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVA 764

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           FAL+ TP G PI ++KNLR C DCH+A K ISKI  REI VRD  RFHHF +
Sbjct: 765 FALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSE 816



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 9/299 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  P+ FT+  VLKA  G+ D  LG+ +H   +   F  D  V N ++  Y   + 
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R +FDEM E D VS++ +I  Y++      ++  FR+MQ  G         T+LS
Sbjct: 301 VLET-RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
              +L +L++G+ +         +  + + N+L+DM+AKC   ++A  +F+S+  RT VS
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS 419

Query: 181 WTSVIAGL---AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           WT++I+G     +HG GL+   LF +M  + +  D   F  +L A +    +  G++   
Sbjct: 420 WTALISGYVQKGLHGAGLK---LFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA 476

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +    G +  +     +VDM  + G +K+A +  ++MP + N + W  LISA    G+
Sbjct: 477 FIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGD 533



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 9/292 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD--IHVQNTLVHMYGSCE-GGIEL 64
           P+  T+  +L  C      N    VH   +K  F  +  + V N L+  Y  CE   ++L
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY--CEVRRLDL 202

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+E+ E+DSV+++ +I GY + GL T++I LF +M+ SG  P + T   VL A   
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L    +G+ + +       +R   + N ++D ++K   V +   LF  M     VS+  V
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  +   +   ++  F EM   G    +  F  +LS  ++   +  GR+     +    
Sbjct: 323 ISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLA 380

Query: 245 IIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               I H G  +VDM  +    +EA    + +P +   + W  LIS    +G
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALISGYVQKG 431



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 8/236 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVT 117
           G +   R +FD M +R  V+W+ ++G YAR     +A  LFRQM  S  C  PD +T  T
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 118 VLSACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           +L  C D         V +F  K     N  + + N L+  + +   +D A  LF  +  
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-E 234
           +  V++ ++I G    G   E++ LF +M ++G  P D  F G+L A    GL D    +
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQ 270

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              ++    G          ++D   +  RV E      +MP E + + +  +IS+
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP-ELDFVSYNVVISS 325



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 138 IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
           +  +M +++    N +I    K GDV  A  LF +M  RT+V+WT ++   A +    EA
Sbjct: 70  VYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEA 129

Query: 198 VALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDK-GREYFDSMKNDFGIIPKIEHYGC 254
             LF +M  +     PD V F  LL  C+     +  G+ +  ++K  F   P +     
Sbjct: 130 FKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNV 189

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           ++   C   R+  A    +++P E + + + TLI+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIP-EKDSVTFNTLIT 223


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/429 (41%), Positives = 278/429 (64%), Gaps = 1/429 (0%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           V N+L+ MY    G +E  RK FD + E++ VS++A++ GYA+   S +A  LF ++  +
Sbjct: 61  VGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 119

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           G+     T  ++LS    +GA+  G+ +   + K     +  +CNALI M+++CG+++ A
Sbjct: 120 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            ++F  M  R ++SWTS+I G A HG    A+ +F +MLE G  P+++ +V +LSACSH 
Sbjct: 180 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 239

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           G++ +G+++F+SM  + GI+P++EHY CMVD+L RSG + EA EFI  MP+ A+ ++WRT
Sbjct: 240 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 299

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L+ AC   G  +L     + ++  EP   + Y+LLS+++A   +W+   KIR+ M +R +
Sbjct: 300 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNL 359

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINE 406
            K  G + IE++N ++ F  G+ SH Q+ +IY+ LD++  K+K+ GY+P T  VL DI E
Sbjct: 360 IKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEE 419

Query: 407 EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           E KE  L +HSEK+A+AF L+ T    PIRI KNLRVC DCH+A K+IS    REIVVRD
Sbjct: 420 EQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRD 479

Query: 467 RHRFHHFKD 475
            +RFHH K+
Sbjct: 480 SNRFHHIKN 488



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  + FT+  +L   A IG +  G+ +HG +LK  +  +  + N L+ MY  C G IE 
Sbjct: 120 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC-GNIEA 178

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+EM +R+ +SW++MI G+A+ G +T A+++F +M  +G  P+EIT V VLSAC+ 
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 238

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
           +G +  G K   S  ++  +   +     ++D+  + G + +A++   SM      + W 
Sbjct: 239 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 298

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           +++    +HG         E +LE    PDD A   LLS
Sbjct: 299 TLLGACRVHGNTELGRHAAEMILEQ--EPDDPAAYILLS 335



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 46/271 (16%)

Query: 54  MYGSC--EGGIELGRKVFDEMSERDSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCP 110
           MY  C  +G ++  RKVF++M E + +SW+A+I  Y + G    +AI+LF +M       
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM------- 53

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
                   +SA  +     VG                   N+LI M+A+ G ++ A K F
Sbjct: 54  --------ISASVNC----VG-------------------NSLISMYARSGRMEDARKAF 82

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             +  + +VS+ +++ G A + +  EA  LF E+ + G+      F  LLS  +  G + 
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           KG +    +    G          ++ M  R G ++ A +   +M  + N I W ++I+ 
Sbjct: 143 KGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITG 200

Query: 291 CCARGELKLAESITKRLI--GNEPMHESNYV 319
               G    A  +  +++  G +P +E  YV
Sbjct: 201 FAKHGFATRALEMFHKMLETGTKP-NEITYV 230


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 299/475 (62%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PN +TY  VL+AC G+ D+ +   +H  ++K     D++V++ L+ ++    G
Sbjct: 105 MLRDGVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKL-G 160

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    VFDEM   D++ W+++IGG+A+   S  A++LF++M+ +G   ++ T+ +VL 
Sbjct: 161 EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G      I K   ++ + L NAL+DM+ KCG ++ A ++F  M  R +++
Sbjct: 221 ACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVIT 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+GLA +G   EA+ LFE M  +G  P+ +  VG+L ACSH GL++ G  YF SMK
Sbjct: 279 WSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 338

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P  EHYGCM+D+L ++G++ +A + + +M  E + + WRTL+ AC  +  + LA
Sbjct: 339 KLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLA 398

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K++I  +P     Y +LS+IYA   +W+   +IR+ M   G+KK PG + IE++ +
Sbjct: 399 EYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQ 458

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD+SH Q  E+ + L+++  ++   GYVP T+ VL D+  E  ED+L  HSEKL
Sbjct: 459 IHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKL 518

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+  P    IRI KNLR+C DCH   K  SK+ NR IV+RD  R+HHF+D
Sbjct: 519 ALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQD 573



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           +G+  +  TY  ++K C     ++ G  +   +        + + N L++MY      + 
Sbjct: 7   HGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKF-NLLN 65

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC- 122
              ++FD+M +R+ +SW+ MI  Y++  +   A++L   M   GV P+  T  +VL AC 
Sbjct: 66  DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACN 125

Query: 123 --TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             +D+  L  G      I K+ +   V + +ALID+FAK G+ + AL +F  M     + 
Sbjct: 126 GMSDVRMLHCG------IIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 179

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           W S+I G A + R   A+ LF+ M  AG   +      +L AC+   L++ G + +   +
Sbjct: 180 WNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV 239

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           K D  +I        +VDM C+ G +++A     +M  E + I W T+IS     G
Sbjct: 240 KYDQDLILN----NALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISGLAQNG 290



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 144/356 (40%), Gaps = 50/356 (14%)

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           +Q  G+  D  T   ++  C    A+  G  +   +        + L N LI+M+ K   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLA---MHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           ++ A +LF  M  R ++SWT++I+  +   +H + LE + L   ML  GV P+   +  +
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL---MLRDGVRPNVYTYSSV 120

Query: 220 LSACS--------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           L AC+        HCG++ +G E              +     ++D+  + G  ++A   
Sbjct: 121 LRACNGMSDVRMLHCGIIKEGLE------------SDVYVRSALIDVFAKLGEPEDALSV 168

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
             +M +  + I+W ++I          +A  + KR      M  + ++        +LR 
Sbjct: 169 FDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKR------MKRAGFIAEQATLTSVLRA 221

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
                + E+  +  +  +     + L+N + +  C   S   ++ ++  + E        
Sbjct: 222 CTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERD------ 275

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP--IRIVKNLRVCN 445
             V T S ++  +       A N +S++    F L+K+    P  I IV  L  C+
Sbjct: 276 --VITWSTMISGL-------AQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACS 322


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/471 (40%), Positives = 298/471 (63%), Gaps = 2/471 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  PN++T   VL +C+G   +  GK VH  ++K  F   + V ++L+ MY   E 
Sbjct: 102 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 161

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R+VFD + ERD VS +A+I GYA+ GL  +A+DLFRQ+   G+  + +T  T+++
Sbjct: 162 -IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 220

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L +L+ GK V + I ++ +   V L N+LIDM++KCG +  + ++F +M  R++VS
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G   HG G E ++LF++ L   V PD V  + +LS CSH GLVD+G + FD++ 
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 339

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +   +    HYGC++D+L RSGR+++A   I+ MP E+ P IW +L+ AC     + + 
Sbjct: 340 KEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVG 399

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + ++L+  EP +  NYV+LS+IYA    W+   K+R++M ++ + K PG + I LD  
Sbjct: 400 ELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 459

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F   ++ H   K+I   + E+   +K AG+VP  S VL D+++E KE  L  HSEKL
Sbjct: 460 IHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKL 519

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           AI F L+ TPPG  IR++KNLR+C DCH+  KF+SK+Y REI +RD++RFH
Sbjct: 520 AITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFH 570



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 149/285 (52%), Gaps = 5/285 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S     Y   + AC     L  G+ VH  ++  ++   + +   LV MY  C G ++ 
Sbjct: 5   GASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRC-GALDD 63

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R V D M ER  VSW+ MI GY++     +A+DLF +M  +G  P+E T+ TVL++C+ 
Sbjct: 64  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 123

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             ++  GK V S + K      + + ++L+DM+AK  ++ +A ++F ++  R +VS T++
Sbjct: 124 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 183

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I+G A  G   EA+ LF ++   G+  + V F  L++A S    +D G++ +   ++ + 
Sbjct: 184 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                +++   ++DM  + G++  +      M +E + + W  ++
Sbjct: 244 PFFVALQN--SLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNAML 285


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/474 (40%), Positives = 295/474 (62%), Gaps = 6/474 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN+FTY  +L A   I        VH  V+K  +     V   L+  Y    G
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL-G 442

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   KVF  + ++D V+WSAM+ GYA+ G +  AI +F ++   G+ P+E T  ++L+
Sbjct: 443 KVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILN 502

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            C    A +  GK    F  K  ++ S+ + +AL+ M+AK G+++ A ++F+    + +V
Sbjct: 503 VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV 562

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG+ ++A+ +F+EM +  V  D V F+G+ +AC+H GLV++G +YFD M
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D  I P  EH  CMVD+  R+G++++A + I+ MP  A   IWRT+++AC    + +L
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTEL 682

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
                +++I  +P   + YVLLS++YA+   W+++ K+R++M++R +KK PG + IE+ N
Sbjct: 683 GRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F+ GD+SH    +IY  L+++  ++K  GY P TS VL DI++E KE  L +HSE+
Sbjct: 743 KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSER 802

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LAIAF L+ TP G+P+ I+KNLRVC DCH   K I+KI  REIVVRD +RFHHF
Sbjct: 803 LAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHF 856



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 16/233 (6%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV--HMYGSCEGGIELGRKVFD 70
           +  VLK  A + D   G+ +H   +KF F DD+ V  +LV  +M GS     + GRKVFD
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS---NFKDGRKVFD 152

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           EM ER+ V+W+ +I GYAR  ++ + + LF +MQ  G  P+  T    L    + G    
Sbjct: 153 EMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G  V + + K  +++++ + N+LI+++ KCG+V KA  LF     +++V+W S+I+G A 
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKG 232
           +G  LEA+ +F  M    V   + +F  ++  C+           HC +V  G
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN FT+   L   A  G    G  VH  V+K      I V N+L+++Y  C G
Sbjct: 185 MQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC-G 243

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD+   +  V+W++MI GYA  GL  +A+ +F  M+++ V   E +  +V+ 
Sbjct: 244 NVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIK 303

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
            C +L  L   + +   + K        +  AL+  ++KC  +  AL+LF+ +     +V
Sbjct: 304 LCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVV 363

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++I+G   +    EAV LF EM   GV P++  +  +L+A     ++     +   +
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVV 420

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K ++     +     ++D   + G+V+EA +    +  + + + W  +++     GE + 
Sbjct: 421 KTNYERSSTVGT--ALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGETEA 477

Query: 300 A 300
           A
Sbjct: 478 A 478


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 297/476 (62%), Gaps = 6/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           + E     N+ ++  +LK     G L+    +  A+        +   N ++  +G   G
Sbjct: 306 LFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPI----KSVVACNAMILCFGQ-NG 360

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFD+M E+D  +WSAMI  Y R GL  DA++LFR MQ  G+ P+  ++++VLS
Sbjct: 361 EVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLS 420

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L  L+ G+ + + + +   +  V + + L+ M+ KCG++ KA ++F     + +V 
Sbjct: 421 VCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I G A HG G+EA+ +F +M  +G+ PDDV FVG+LSACS+ G V KG E F+SM+
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME 540

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + +  KIEHY CMVD+L R+G++ EA + I+KMP+EA+ IIW  L+ AC    +L LA
Sbjct: 541 TKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLA 600

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L+  EP +   ++LLS+IYA   RW+   ++R  M  R + K PG + I ++ +
Sbjct: 601 EVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKK 660

Query: 361 IYEFVCGDKS-HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++F  GD S H +  EI  +L+ +   +++AGY P  S VL D++EE+K  +L  HSEK
Sbjct: 661 VHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEK 720

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A+ LLK P G PIR++KNLRVC DCH+A K I+K+  REI++RD +RFHHFKD
Sbjct: 721 LAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKD 776



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 56  GSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C+ G +   R +FDEM  R+ VSW+ MI GY    +    +D+ R++       +E++
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY----VQNQQVDIARKLFEVMPEKNEVS 317

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
              +L   T+ G L+      S +   M  +SV  CNA+I  F + G+V KA ++F  M 
Sbjct: 318 WTAMLKGYTNCGRLDEA----SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMR 373

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            +   +W+++I      G  L+A+ LF  M   G+ P+  + + +LS C+    +D GRE
Sbjct: 374 EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGRE 433

Query: 235 YFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               + ++ F +   +     ++ M  + G + +A +   +  ++ + ++W ++I+    
Sbjct: 434 IHAQLVRSQFDL--DVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQ 490

Query: 294 RG 295
            G
Sbjct: 491 HG 492



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 25/250 (10%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N LV  Y +  G I   R+VFD M ER+ VSW+AM+ GY + G+ ++A  LF QM    V
Sbjct: 164 NGLVSGYIN-NGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV 222

Query: 109 CPDEITMVTVLSACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
               ++   +L      G + E  +  +   EK +V R+      +I  + + G + +A 
Sbjct: 223 ----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRT-----NMIGGYCQVGRLVEAR 273

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            LF  M  R +VSWT++I G   + +   A  LFE M E     ++V++  +L   ++CG
Sbjct: 274 MLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCG 329

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC--RSGRVKEAHEFIQKMPIEANPIIWR 285
            +D+  E F++M       P      C   +LC  ++G V +A +   +M  E +   W 
Sbjct: 330 RLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWS 381

Query: 286 TLISACCARG 295
            +I     +G
Sbjct: 382 AMIKVYERKG 391



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 121/266 (45%), Gaps = 19/266 (7%)

Query: 38  KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
           +F   + I  +N+L+  Y    G IE  R VFDEM +++ +SW++++ GY +     +A 
Sbjct: 91  RFYCSNFIISRNSLITRYSRL-GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQ 149

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           ++F +M       + I+   ++S   + G +   +  E F   +M  R+V    A++  +
Sbjct: 150 NMFDKMSER----NTISWNGLVSGYINNGMINEAR--EVF--DRMPERNVVSWTAMVRGY 201

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
            K G + +A  LF  M  + +VSWT ++ GL   GR  EA  LF+ M E     D V   
Sbjct: 202 VKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRT 257

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++      G + + R  FD M         +  +  M+    ++ +V  A +  + MP 
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRR-----NVVSWTTMITGYVQNQQVDIARKLFEVMP- 311

Query: 278 EANPIIWRTLISACCARGELKLAESI 303
           E N + W  ++      G L  A  +
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASEL 337



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 23/218 (10%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD+MSER+++SW+ ++ GY   G+  +A ++F +M    V    ++   ++     
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVK 203

Query: 125 LGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            G + E         EK +V+ +V L   L +     G +D+A +LF  M  + +V+ T+
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQE-----GRIDEACRLFDMMPEKDVVTRTN 258

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM--KN 241
           +I G    GR +EA  LF+EM    V    V++  +++       VD  R+ F+ M  KN
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEKN 314

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           +      ++ Y          GR+ EA E    MPI++
Sbjct: 315 EVSWTAMLKGY-------TNCGRLDEASELFNAMPIKS 345


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 301/473 (63%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIE 63
           G  P+  T   +    A   D    +SVHG +++  +  +D+ + N +V MY    G ++
Sbjct: 412 GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKL-GLLD 470

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSAC 122
              KVF+ +  +D +SW+ +I GYA+ GL+++AI++++ M+    + P++ T V++L A 
Sbjct: 471 SAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 530

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +GAL+ G  +   + K  ++  V +   LID++ KCG +  A+ LF  +   + V+W 
Sbjct: 531 AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 590

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+   +HG   + + LF EML+ GV PD V FV LLSACSH G V++G+  F  M+ +
Sbjct: 591 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-E 649

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+L R+G ++ A++FI+ MP++ +  IW  L+ AC   G ++L + 
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            + RL   +  +   YVLLS+IYA + +WE   K+R +  +RG+KK PG + IE++ ++ 
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G++SH + KEIYE L  +  KMK  GY+P  S VL D+ E++KE  L  HSE+LAI
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ TPP +PIRI KNLRVC DCH+ATKFIS+I  REIVVRD +RFHHFKD
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKD 882



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 5/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ +T+P VLKAC  + D   G+ +H    K  F  ++ V  +L+HMY S  G   + 
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMY-SRFGFTGIA 269

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD+M  RD  SW+AMI G  + G +  A+D+  +M++ G+  + +T+V++L  C  L
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQL 329

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G +     +  ++ K  +   + + NALI+M+AK G+++ A K F+ M    +VSW S+I
Sbjct: 330 GDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSII 389

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           A    +   + A   F +M   G  PD +  V L S  +        R     +     +
Sbjct: 390 AAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWL 449

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +  +     +VDM  + G +  AH+  + +P++ + I W TLI+     G
Sbjct: 450 MEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITGYAQNG 498



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 17/327 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   +L  C  +GD++    +H  V+K     D+ V N L++MY    G +E 
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF-GNLED 369

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RK F +M   D VSW+++I  Y +      A   F +MQ++G  PD +T+V++ S    
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 125 LGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
               +  + V  FI ++  +   V + NA++DM+AK G +D A K+F  +  + ++SW +
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 489

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +I G A +G   EA+ +++ M E   + P+   +V +L A +H G + +G      MK  
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG------MKIH 543

Query: 243 FGIIPKIEHY-----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
             +I    H       C++D+  + GR+ +A     ++P E++ + W  +IS     G  
Sbjct: 544 GRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGHA 602

Query: 298 KLAESITKRLI--GNEPMHESNYVLLS 322
           +    +   ++  G +P H +   LLS
Sbjct: 603 EKTLKLFGEMLDEGVKPDHVTFVSLLS 629



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 45  IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ-M 103
           I +   LV++Y +  G + L R  FD++ ++D  +W++MI  Y   G   +AI  F Q +
Sbjct: 151 IFISTRLVNLYANL-GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 209

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
            +S + PD  T   VL AC   G L  G+ +  +  K     +V +  +LI M+++ G  
Sbjct: 210 LVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 266

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A  LF  M  R + SW ++I+GL  +G   +A+ + +EM   G+  + V  V +L  C
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 224 SHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
              G +        Y      +F +         +++M  + G +++A +  Q+M I  +
Sbjct: 327 PQLGDISTAMLIHLYVIKHGLEFDLFVS----NALINMYAKFGNLEDARKAFQQMFI-TD 381

Query: 281 PIIWRTLISA 290
            + W ++I+A
Sbjct: 382 VVSWNSIIAA 391


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/474 (39%), Positives = 289/474 (60%), Gaps = 3/474 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
            E  V PN+ T   ++ AC G   L+ GK +HG  +K     ++ V N+L++MYG   G 
Sbjct: 131 FEMSVKPNEVTILSMISACNGA--LDAGKYIHGFGIKVGGTLEVKVANSLINMYGK-SGD 187

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +    ++F+ + + ++VSW+++I      G + + ID F +M+  G+  DE T++ +L A
Sbjct: 188 LTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQA 247

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  LG  ++ + +   +        + +  AL+D +AK G +  +  +F  +     V+W
Sbjct: 248 CLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAW 307

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T+++AG A HG G EA+ LFE M   G+ PD V F  LLSACSH GLV++G+ YF+ M  
Sbjct: 308 TAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSE 367

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            +GI P+++HY CMVD+L R G + +A+E IQ MP+E N  +W  L+ AC   G ++L +
Sbjct: 368 VYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGK 427

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
            + + LI  EP+   NY++LS++Y+    W+   K+R ++ +RG+K+ PG + IE  N+ 
Sbjct: 428 EVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKN 487

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD+SH ++++IY  L+E+  K++KAGY   T  VL D+ EE KED +NKHSEKLA
Sbjct: 488 HHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLA 547

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           IAF LL +  G  + I KNLR+C DCHS  K IS I  R I++RD  RFHHF D
Sbjct: 548 IAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSD 601



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 149/299 (49%), Gaps = 16/299 (5%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           + +H  V K     D  + + LV  Y    G  E   K+FD+M  +D VSW+++I G++R
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKL-GYAEDALKLFDDMPHKDLVSWNSLISGFSR 117

Query: 90  -LGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
            L +S  A   F  M+    V P+E+T+++++SAC   GAL+ GK++  F  K      V
Sbjct: 118 CLHMSLTA---FYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEV 172

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + N+LI+M+ K GD+  A +LF ++     VSW S+IA    +G   E +  F +M   
Sbjct: 173 KVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRL 232

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+  D+   + LL AC H G V K  E    +    G   KI     ++D   + GR+  
Sbjct: 233 GIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSA 291

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG----ELKLAESITKRLIGNEPMHESNYVLLS 322
           ++    ++   A+ + W  +++   A G     +KL ES+  +  G EP H +   LLS
Sbjct: 292 SYGVFTEVGF-ADRVAWTAMLAGYAAHGLGREAIKLFESMANK--GLEPDHVTFTHLLS 347



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+  ++ T   +L+AC  +G   L +S+HG +    FG  I +   L+  Y    G
Sbjct: 229 MRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKL-G 287

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VF E+   D V+W+AM+ GYA  GL  +AI LF  M   G+ PD +T   +LS
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +  GK +     E   +   V   + ++D+  +CG ++ A ++ ++M      
Sbjct: 348 ACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNA 407

Query: 180 S-WTSVIAGLAMHG 192
             W +++    +HG
Sbjct: 408 GVWGALLGACRVHG 421



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 10/200 (5%)

Query: 99  LFRQMQISGVCPDEITMVT-VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           L R   +   C     +V+ +L A     ++   + + + + K ++ R   + + L+  +
Sbjct: 25  LHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCY 84

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA--MHGRGLEAVALFEEMLEAGVPPDDVA 215
            K G  + ALKLF  M  + +VSW S+I+G +  +H   +   A +    E  V P++V 
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH---MSLTAFYTMKFEMSVKPNEVT 141

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
            + ++SAC+  G +D G+ Y        G   +++    +++M  +SG +  A    + +
Sbjct: 142 ILSMISACN--GALDAGK-YIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 276 PIEANPIIWRTLISACCARG 295
           P + N + W ++I+A    G
Sbjct: 199 P-DPNTVSWNSIIAAQVTNG 217


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 296/475 (62%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V PN +TY  VL++C G+ D+ +   +H  ++K     D+ V++ L+ ++    G
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKL-G 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    VFDEM   D++ W+++IGG+A+   S  A++LF++M+ +G   ++ T+ +VL 
Sbjct: 209 EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G      I K   ++ + L NAL+DM+ KCG ++ AL++F  M  R +++
Sbjct: 269 ACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVIT 326

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+GLA +G   EA+ LFE M  +G  P+ +  VG+L ACSH GL++ G  YF SMK
Sbjct: 327 WSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P  EHYGCM+D+L ++G++ +A + + +M  E + + WRTL+ AC  +  + LA
Sbjct: 387 KLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLA 446

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K++I  +P     Y LLS+IYA   +W+   +IR  M  RG+KK PG + IE++ +
Sbjct: 447 EYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD SH Q  E+ + L+++  ++   GYVP T+ VL D+  E  ED+L  HSEKL
Sbjct: 507 IHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKL 566

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+  P    IRI KNLR+C DCH   K  SK+  R IV+RD  R+HHF+D
Sbjct: 567 ALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQD 621



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD---AIDLFRQMQISGVCPDEITMVTV 118
           I+L R V        S   + ++  + RL    D   A+     +Q  G+  D  T   +
Sbjct: 8   IKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSEL 67

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  C    A+  G  +   +        + L N LI+M+ K   ++ A +LF  M  R +
Sbjct: 68  IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127

Query: 179 VSWTSVIAGLA---MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------HCG 227
           +SWT++I+  +   +H + LE + L   ML   V P+   +  +L +C+        HCG
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG 184

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           ++ +G E              +     ++D+  + G  ++A     +M +  + I+W ++
Sbjct: 185 IIKEGLE------------SDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSI 231

Query: 288 ISACCARGELKLAESITKRL 307
           I          +A  + KR+
Sbjct: 232 IGGFAQNSRSDVALELFKRM 251


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 297/476 (62%), Gaps = 6/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           + E     N+ ++  +LK     G L+    +  A+        +   N ++  +G   G
Sbjct: 306 LFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPI----KSVVACNAMILCFGQ-NG 360

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+VFD+M E+D  +WSAMI  Y R GL  DA++LFR MQ  G+ P+  ++++VLS
Sbjct: 361 EVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLS 420

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L  L+ G+ + + + +   +  V + + L+ M+ KCG++ KA ++F     + +V 
Sbjct: 421 VCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVM 480

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I G A HG G+EA+ +F +M  +G+ PDDV FVG+LSACS+ G V KG E F+SM+
Sbjct: 481 WNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSME 540

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + +  KIEHY CMVD+L R+G++ EA + I+KMP+EA+ IIW  L+ AC    +L LA
Sbjct: 541 TKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLA 600

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L+  EP +   ++LLS+IYA   RW+   ++R  M  R + K PG + I ++ +
Sbjct: 601 EVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKK 660

Query: 361 IYEFVCGDKS-HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++F  GD S H +  EI  +L+ +   +++AGY P  S VL D++EE+K  +L  HSEK
Sbjct: 661 VHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEK 720

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+A+ LLK P G PIR++KNLRVC DCH+A K I+K+  REI++RD +RFHHFKD
Sbjct: 721 LAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKD 776



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 56  GSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C+ G +   R +FDEM  R+ VSW+ MI GY    +    +D+ R++       +E++
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY----VQNQQVDIARKLFEVMPEKNEVS 317

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
              +L   T+ G L+      S +   M  +SV  CNA+I  F + G+V KA ++F  M 
Sbjct: 318 WTAMLKGYTNCGRLDEA----SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMR 373

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            +   +W+++I      G  L+A+ LF  M   G+ P+  + + +LS C+    +D GRE
Sbjct: 374 EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGRE 433

Query: 235 YFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               + ++ F +   +     ++ M  + G + +A +   +  ++ + ++W ++I+    
Sbjct: 434 IHAQLVRSQFDL--DVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQ 490

Query: 294 RG 295
            G
Sbjct: 491 HG 492



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 25/250 (10%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N LV  Y +  G I   R+VFD M ER+ VSW+AM+ GY + G+ ++A  LF QM    V
Sbjct: 164 NGLVSGYIN-NGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV 222

Query: 109 CPDEITMVTVLSACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
               ++   +L      G + E  +  +   EK +V R+      +I  + + G + +A 
Sbjct: 223 ----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRT-----NMIGGYCQVGRLVEAR 273

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            LF  M  R +VSWT++I G   + +   A  LFE M E     ++V++  +L   ++CG
Sbjct: 274 MLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCG 329

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC--RSGRVKEAHEFIQKMPIEANPIIWR 285
            +D+  E F++M       P      C   +LC  ++G V +A +   +M  E +   W 
Sbjct: 330 RLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWS 381

Query: 286 TLISACCARG 295
            +I     +G
Sbjct: 382 AMIKVYERKG 391



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 121/266 (45%), Gaps = 19/266 (7%)

Query: 38  KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97
           +F   + I  +N+L+  Y    G IE  R VFDEM +++ +SW++++ GY +     +A 
Sbjct: 91  RFYCSNFIISRNSLITRYSRL-GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQ 149

Query: 98  DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157
           ++F +M       + I+   ++S   + G +   +  E F   +M  R+V    A++  +
Sbjct: 150 NMFDKMSER----NTISWNGLVSGYINNGMINEAR--EVF--DRMPERNVVSWTAMVRGY 201

Query: 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
            K G + +A  LF  M  + +VSWT ++ GL   GR  EA  LF+ M E     D V   
Sbjct: 202 VKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRT 257

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++      G + + R  FD M         +  +  M+    ++ +V  A +  + MP 
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRR-----NVVSWTTMITGYVQNQQVDIARKLFEVMP- 311

Query: 278 EANPIIWRTLISACCARGELKLAESI 303
           E N + W  ++      G L  A  +
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASEL 337



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 23/218 (10%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD+MSER+++SW+ ++ GY   G+  +A ++F +M    V    ++   ++     
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVK 203

Query: 125 LGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            G + E         EK +V+ +V L   L +     G +D+A +LF  M  + +V+ T+
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQE-----GRIDEACRLFDMMPEKDVVTRTN 258

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM--KN 241
           +I G    GR +EA  LF+EM    V    V++  +++       VD  R+ F+ M  KN
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEKN 314

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           +      ++ Y          GR+ EA E    MPI++
Sbjct: 315 EVSWTAMLKGY-------TNCGRLDEASELFNAMPIKS 345


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 301/510 (59%), Gaps = 36/510 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH----VQNTLVHMYG 56
           M   G+  +++TY  V+ A +  G  N+G+ VH  VL+       H    V N L+ +Y 
Sbjct: 265 MHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYT 324

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSA-------------------------------MIG 85
            C   +E  R+VFD+M  +D VSW+A                               MI 
Sbjct: 325 RCGKLVE-ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMIS 383

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G A+ G   + + LF QM++ G+ P +      +++C+ LG+L+ G+ + S I +   + 
Sbjct: 384 GLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDS 443

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           S+ + NALI M+++CG V+ A  +F +M     VSW ++IA LA HG G++A+ L+E+ML
Sbjct: 444 SLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKML 503

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +  + PD + F+ +LSACSH GLV +GR YFD+M+  +GI P+ +HY  ++D+LCR+G  
Sbjct: 504 KEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMF 563

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
            EA    + MP E    IW  L++ C   G ++L      RL+   P  +  Y+ LS++Y
Sbjct: 564 SEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMY 623

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           A L +W++  ++R++M +RG+KK PG + IE++N ++ F+  D  H +   +Y  L+++ 
Sbjct: 624 AALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLV 683

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
            +M+K GYVP T  VL D+  E KE AL+ HSEKLA+ + ++K P G  IR+ KNLR+C 
Sbjct: 684 HEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICG 743

Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           DCH+A K+ISK+ +REI+VRDR RFHHF++
Sbjct: 744 DCHNAFKYISKVVDREIIVRDRKRFHHFRN 773



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 158/372 (42%), Gaps = 79/372 (21%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG-KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G  P+ FT+  VL A + I D     + +H  V K+       V N L+  Y SC 
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA 180

Query: 60  GG--------IELGRKVFDE---------------------------------MSERDSV 78
                     +   RK+FDE                                 M++  +V
Sbjct: 181 SSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAV 240

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           +W+AMI GY   G   +A DL R+M   G+  DE T  +V+SA ++ G   +G+ V +++
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYV 300

Query: 139 EKQMVNRS----VGLCNALIDMFAKCGD-------------------------------V 163
            + +V  S    + + NALI ++ +CG                                +
Sbjct: 301 LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++A  +FR M  R++++WT +I+GLA +G G E + LF +M   G+ P D A+ G +++C
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           S  G +D G++   S     G    +     ++ M  R G V+ A      MP   + + 
Sbjct: 421 SVLGSLDNGQQ-LHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVS 478

Query: 284 WRTLISACCARG 295
           W  +I+A    G
Sbjct: 479 WNAMIAALAQHG 490



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 131/314 (41%), Gaps = 54/314 (17%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           DI    T++  Y S  G I+L  ++F+   MS RD+VS++AMI  ++       A+ LF 
Sbjct: 61  DIVAATTMLSAY-SAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFV 119

Query: 102 QMQISGVCPDEITMVTVLSA----------CTDL-------GALEVGKWVESFIEKQMVN 144
           QM+  G  PD  T  +VL A          C  L       GAL V   + + +   +  
Sbjct: 120 QMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSC 179

Query: 145 RSVGLCNALIDM--------------------------FAKCGDVDKALKLFRSMNGRTI 178
            S  L N+ + M                          + +  D+  A +L   M     
Sbjct: 180 ASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA 239

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W ++I+G    G   EA  L   M   G+  D+  +  ++SA S+ GL + GR+    
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAY 299

Query: 239 MKNDFGIIPKIEHY-----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           +     ++    H+       ++ +  R G++ EA     KMP++ + + W  ++S C  
Sbjct: 300 VLRT--VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVN 356

Query: 294 RGELKLAESITKRL 307
              ++ A SI + +
Sbjct: 357 ARRIEEANSIFREM 370


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 290/475 (61%), Gaps = 3/475 (0%)

Query: 1   MLEYGVS-PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   VS P+ FT+ F LKAC  I  +     +HG+V++  F  D  V   LV  Y S  
Sbjct: 97  MLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFLADAIVSTNLVRCY-SAN 155

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E+  KVFDEM  RD VSW+AMI  ++  GL   A  ++ +M   GVC D  T+V +L
Sbjct: 156 GSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALL 215

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S+C  + AL +G  +           SV +CNALIDM+AKCG ++ A+ +F+ M  R ++
Sbjct: 216 SSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVL 275

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W S+I G  +HG G+EA++ F +M+ +GV P+ V F+GLL  CSH GLV +G E+F+ M
Sbjct: 276 TWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIM 335

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            + F + P ++HYGCMVD+  R+G++++A E I       +P++WRTL+ +C     L+L
Sbjct: 336 SSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLEL 395

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+L+  E  +  +YVL++ IY+     +    +R+++    ++ IPG + IE+ +
Sbjct: 396 GEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGD 455

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTS-EVLLDINEEDKEDALNKHSE 418
           ++++FV  DK H +S  IY  L E+  +   AGY P  S      +++   E A   HSE
Sbjct: 456 QVHKFVIDDKMHPESALIYSELGEVINRAILAGYKPEDSNRTAHTLSDRCLESADTSHSE 515

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           KLAIA+ L++T  GT +RI KNLRVC DCHS TK++SK +NREI+VRDR RFH F
Sbjct: 516 KLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHQF 570


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/506 (40%), Positives = 293/506 (57%), Gaps = 40/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNL---GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           G+ P+  +   VL A   +GDL++   G  +H  V+K   G D  V + L+ MYG C   
Sbjct: 205 GLKPDGTSVSSVLPA---VGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACA 261

Query: 62  IELGRKVFDEMSERDS---------------------------------VSWSAMIGGYA 88
            E+   VF+EM E D                                  VSW++MI   +
Sbjct: 262 SEMS-GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCS 320

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   +A++LFR+MQI GV P+ +T+  +L AC ++ AL  GK    F  +  +   V 
Sbjct: 321 QNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVY 380

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + +ALIDM+AKCG +  +   F  M  R +VSW S++AG AMHG+  EA+ +FE M   G
Sbjct: 381 VGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCG 440

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             PD V+F  +LSAC+  GL ++G  YFDSM  + G+  ++EHY CMV +L RSGR++EA
Sbjct: 441 QKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEA 500

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
           +  I++MP E +  +W  L+S+C     + L E   KR+   EP +  NY+LLS+IYA  
Sbjct: 501 YAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASK 560

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
             W +   +R++M  RG+KK PG + IE+ N+++  + GD SH Q  +I E L ++  +M
Sbjct: 561 AMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEM 620

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK+GYVP T  VL D+ E+DKE  L  HSEKLA+   LL T PG P++++KNLR+C DCH
Sbjct: 621 KKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCH 680

Query: 449 SATKFISKIYNREIVVRDRHRFHHFK 474
           +  KFIS    REI VRD +RFH FK
Sbjct: 681 AVIKFISDFEKREIFVRDTNRFHQFK 706



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 173/393 (44%), Gaps = 75/393 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+    P V+K CA +  L  GK +H   L    G D  V ++L+HMY   + 
Sbjct: 65  MLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDH 124

Query: 61  GIELGRKVFDEMS-----------------------------------ERDSVSWSAMIG 85
            ++  R VFD++                                    E + VSW+ MI 
Sbjct: 125 -LKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMIS 183

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
           G+ R G   DA+ +F+ M + G+ PD  ++ +VL A  DL    +G  +  ++ KQ +  
Sbjct: 184 GFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGP 243

Query: 146 SVGLCNALIDMFAKC-------------------------------GDVDKALKLFRSMN 174
              + +ALIDM+ KC                               G VD AL++F+   
Sbjct: 244 DKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFK 303

Query: 175 GR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           G    +VSWTS+IA  + +G+ +EA+ LF EM   GV P+ V    LL AC +   +  G
Sbjct: 304 GMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHG 363

Query: 233 R-EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           +  +  S++N  GI   +     ++DM  + GR+  +      MP   N + W +L++  
Sbjct: 364 KAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMP-NRNLVSWNSLMAGY 420

Query: 292 CARGELKLAESITKRL--IGNEPMHESNYVLLS 322
              G+   A +I + +   G +P H S   +LS
Sbjct: 421 AMHGKTFEAINIFELMQRCGQKPDHVSFTCVLS 453



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 110/288 (38%), Gaps = 66/288 (22%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +  +S    I  +++L      I +F  M   G+ PD   + TV+  C  L AL+ GK +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 135 ESF-------------------------------IEKQMVNRSVGLCNALIDMFAKCGDV 163
             F                               +  ++    V   +ALI  FA+ G V
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 164 DKALKLFRSMNG----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
            +  +LF           +VSW  +I+G    G  L+AV +F+ M   G+ PD  +   +
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 220 LSACS-----------HCGLVDK--GREYF---------------DSMKNDFGIIPKIEH 251
           L A             HC ++ +  G + F                 M   F  + +++ 
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDV 276

Query: 252 YGC--MVDMLCRSGRVKEAHE-FIQKMPIEANPIIWRTLISACCARGE 296
             C  +V  L R+G V  A E F Q   ++ N + W ++I++C   G+
Sbjct: 277 GACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGK 324


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/539 (39%), Positives = 301/539 (55%), Gaps = 64/539 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML  G  P+   +P VLK+C  + DL  G+SVHG +++   G D++  N L++MY     
Sbjct: 97  MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 156

Query: 59  ------------EGGIE------------LG--RKVFDEMSERDSVSWSAMIGGYARLGL 92
                       EG               LG  RKVF+ M +RD VSW+ +I G A+ G+
Sbjct: 157 LEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             DA+ + R+M  + + PD  T+ +VL    +   L  GK +  +  +   +  V + ++
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 276

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA----- 207
           LIDM+AKC  VD + ++F  +     +SW S+IAG   +G   E +  F++ML A     
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPN 336

Query: 208 -------------------------------GVPPDDVAFVGLLSACSHCGLVDKGREYF 236
                                          GV P+ VAF+ +L+ACSH GLVD+  +YF
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYF 396

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +SM  D+ IIP +EHY  + D+L R GR++EA+EFI  M IE    +W TL++AC     
Sbjct: 397 NSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKN 456

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           ++LAE ++K+L   +P +   YVLLS+IY+   RW+   K+R  M  +GMKK P  + IE
Sbjct: 457 IELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIE 516

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           + N+++ FV GDKSH     I E L  +  +M++ GYV  T+EVL D+ EE K   L  H
Sbjct: 517 IKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSH 576

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAI F ++ TP GT IR+ KNLRVC DCH+ATKFISKI  REIVVRD  RFHHFKD
Sbjct: 577 SERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKD 635



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 34/259 (13%)

Query: 68  VFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           +F+ + S   +++W ++I  Y   GL   ++  F QM  SG  PD     +VL +CT + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA-------------------- 166
            L  G+ V   I +  +   +  CNAL++M++K   +++                     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 167 ---------LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
                     K+F  M  R IVSW +VI+G A +G   +A+ +  EM  A + PD     
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 218 GLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            +L   +    + KG+E    +++N +     I     ++DM  +  RV ++      +P
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP 298

Query: 277 IEANPIIWRTLISACCARG 295
            + + I W ++I+ C   G
Sbjct: 299 -QHDGISWNSIIAGCVQNG 316



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
           S  L + ++ +++    +  +L +F S+ +  T ++W S+I     HG  L +++ F +M
Sbjct: 38  SPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQM 97

Query: 205 LEAGVPPDDVAFVGLLSACS 224
           L +G  PD   F  +L +C+
Sbjct: 98  LASGKYPDHNVFPSVLKSCT 117


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 293/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P++F    V + CAG+ D+  G+ VH  V++     D+ V N+L HMY  C G
Sbjct: 165 MRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRC-G 223

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G  V   +     VS++  I G  + G S  A++ F  M+   V PD +T V+ +S
Sbjct: 224 CLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAIS 283

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C+DL AL  G+ V + + K  V++ V +  +L+ M+++CG +  + +++    G  +  
Sbjct: 284 CCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFL 343

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            +++I+    HG+G +AV LF++M+  G  P++V F+ LL ACSH GL D+G E+F+ M 
Sbjct: 344 LSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMT 403

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G  P ++HY C+VD+L RSG + EA   I  MP+ A+ +IW+TL+SAC  +    +A
Sbjct: 404 KTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMA 463

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I +R+I ++P   + YVLLS+I A   RW   T++R++M ++ ++K PG + +E   +
Sbjct: 464 ERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQ 523

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GDKSH +  EI E L EM  K+++ GY P  + V  D+ +E+KE +L  HSEKL
Sbjct: 524 VHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKL 583

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFA L  P G PIR++KNLRVC+DCH A K IS++  REIVVRD  RFHHF+D
Sbjct: 584 AIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRD 638



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 155/322 (48%), Gaps = 16/322 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG--R 66
           ++FT   +L A A +GDL   + +   + K     ++   N L+   G C    +LG  R
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISK----RNVMSWNILI---GGCIKNGDLGSAR 128

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FD+M  R+  +W+AM+ G   +GL  D++  F  M+  G+ PDE  + +V   C  L 
Sbjct: 129 ELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLL 188

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +  G+ V +++ +  ++  + + N+L  M+ +CG + +   + R++   TIVS+ + IA
Sbjct: 189 DVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIA 248

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           G   +G    A+  F  M    V PD V FV  +S CS    + +G++    +    G+ 
Sbjct: 249 GRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKA-GVD 307

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
             +     +V M  R G + ++ E +       +  +   +ISAC   G+   A  + K+
Sbjct: 308 KVVPVITSLVHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQ 366

Query: 307 LI--GNEPMHESNYVLLSHIYA 326
           ++  G EP   +    L+ +YA
Sbjct: 367 MMNGGAEP---NEVTFLALLYA 385


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/483 (39%), Positives = 298/483 (61%), Gaps = 13/483 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   V+ AC   G  +  +++HG V+K     D  VQN L+ MY    G I++
Sbjct: 396 GLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRL-GKIDI 454

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-----------SGVCPDEI 113
            +++F +M +RD V+W+ +I GY       DA+ +  +MQI             + P+ I
Sbjct: 455 AKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSI 514

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T++T+L +C  L AL  GK + ++  K  +   V + +AL+DM+AKCG +  + K+F  +
Sbjct: 515 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             R +++W  ++    MHG   +A+ +   M+  GV P++V F+ + +ACSH G+V++G 
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISACC 292
           + F +MK D+G+ P  +HY C+VD+L R+GRVKEA++ I  +P   +    W +L+ AC 
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
               L++ E   + LI  EP   S+YVLL++IY+    W K T++R  M  +G++K PG 
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE  +E+++FV GD SH QS+++   L+ +  +M+K GY+P TS VL ++ E++KE  
Sbjct: 755 SWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEIL 814

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLAIAF +L T PGT IR+ KNLRVCNDCH ATKFISK+ +REI++RD  RFHH
Sbjct: 815 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHH 874

Query: 473 FKD 475
           FK+
Sbjct: 875 FKN 877



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 147/272 (54%), Gaps = 12/272 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
           M+  G+ P+ F +P +LKA A + D++LGK +H  V KF +G D + V NTLV++Y  C 
Sbjct: 84  MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC- 142

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G      KVFD +SER+ VSW+++I           A++ FR M    V P   T+V+V 
Sbjct: 143 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVA 202

Query: 120 SACTDLG---ALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            AC++      L +GK V ++ + K  +N  +   N L+ M+ K G +  +  L  S  G
Sbjct: 203 LACSNFPMPEGLLMGKQVHAYGLRKGELNSFI--INTLVAMYGKMGKLASSKVLLGSFEG 260

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
           R +V+W +V++ L  + + LEA+    EM+  GV PD      +L ACSH  ++  G+E 
Sbjct: 261 RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320

Query: 235 YFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRV 265
           +  ++KN  G + +    G  +VDM C   +V
Sbjct: 321 HAYALKN--GSLDENSFVGSALVDMYCNCKQV 350



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 18/304 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
           M+  GV P+ FT   VL AC+ +  L  GK +H   LK     ++  V + LV MY +C+
Sbjct: 289 MVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 348

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
             +  G +VFD M +R    W+AMI GYA+     +A+ LF +M+ S G+  +  TM  V
Sbjct: 349 QVLS-GCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGV 407

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + AC   GA    + +  F+ K+ ++R   + NAL+DM+++ G +D A ++F  M  R +
Sbjct: 408 VPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDL 467

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM--LE---------AGVPPDDVAFVGLLSACSHCG 227
           V+W ++I G     R  +A+ +  +M  LE           + P+ +  + +L +C+   
Sbjct: 468 VTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALS 527

Query: 228 LVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
            + KG+E +  ++KN+      +     +VDM  + G ++ + +   ++PI  N I W  
Sbjct: 528 ALAKGKEIHAYAIKNNLAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNV 584

Query: 287 LISA 290
           ++ A
Sbjct: 585 IVMA 588



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 36/276 (13%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           W  ++    R  L  +A+  +  M + G+ PD      +L A  DL  +++GK + + + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 140 KQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
           K      SV + N L++++ KCGD     K+F  ++ R  VSW S+I+ L    +   A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMK----NDFGIIPKIE 250
             F  ML+  V P     V +  ACS+     GL+   + +   ++    N F I   + 
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVA 240

Query: 251 HYGCM------------------------VDMLCRSGRVKEAHEFIQKM---PIEANPII 283
            YG M                        +  LC++ +  EA E++++M    +E +   
Sbjct: 241 MYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFT 300

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
             +++ AC     L+  + +    + N  + E+++V
Sbjct: 301 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC 254
           EAV  + +M+  G+ PD+ AF  LL A +    +D G++ +    K  +G +  +     
Sbjct: 76  EAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYG-VDSVTVANT 134

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +V++  + G     ++   ++  E N + W +LIS+ C+  + ++A    + ++ +E + 
Sbjct: 135 LVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DEDVE 192

Query: 315 ESNYVLLS 322
            S++ L+S
Sbjct: 193 PSSFTLVS 200


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 315/508 (62%), Gaps = 39/508 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P++ T+  V+ AC+  GD  L  S+   + + Q   +  V+  L+ MY  C G
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC-G 309

Query: 61  GIELGRKVFDE--------------------------------MSERDSVSWSAMIGGYA 88
            I   R++FDE                                M  R+ V+W++MI GYA
Sbjct: 310 SIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYA 369

Query: 89  RLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
           + G S  AI+LF++M  +  + PDE+TMV+V+SAC  LGALE+G WV  F+ +  +  S+
Sbjct: 370 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSI 429

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
              NA+I M+++CG ++ A ++F+ M  R +VS+ ++I+G A HG G+EA+ L   M E 
Sbjct: 430 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEG 489

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ PD V F+G+L+ACSH GL+++GR+ F+S+K+     P I+HY CMVD+L R G +++
Sbjct: 490 GIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELED 544

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A   +++MP+E +  ++ +L++A     +++L E    +L   EP +  N++LLS+IYA 
Sbjct: 545 AKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYAS 604

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
             RW+   +IRE M K G+KK  G + +E   ++++F+  D+SH +S +IY++L E+ +K
Sbjct: 605 AGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKK 664

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           M++AGY+   S VL D+ EE+KE+ +  HSEKLAI +ALL +  G  IR+VKNLRVC DC
Sbjct: 665 MREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDC 724

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           H+A K ISK+  R I+VRD +RFH F D
Sbjct: 725 HTAIKMISKLEGRVIIVRDNNRFHCFND 752



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 168/388 (43%), Gaps = 105/388 (27%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ F YP ++K+       N G   H  VLK   G D  V+N ++ MY    G I  
Sbjct: 95  GVRPDAFVYPILIKSAG-----NGGIGFHAHVLKLGHGSDAFVRNAVIDMYARL-GPIGH 148

Query: 65  GRKVFDE---------------------------------MSERDSVSWSAMIGGYARL- 90
            RKVFDE                                 M ER+ ++W+AM+ GYA++ 
Sbjct: 149 ARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK 208

Query: 91  ------------------------------GLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                                         GL+ + + LF +M  +G+ PDE T VTV+S
Sbjct: 209 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVIS 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-------------------- 160
           AC+  G   +   +   + ++ +  +  +  AL+DM+AKC                    
Sbjct: 269 ACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSV 328

Query: 161 ------------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA- 207
                       G++D A +LF +M GR +V+W S+IAG A +G+   A+ LF+EM+ A 
Sbjct: 329 TWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAK 388

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            + PD+V  V ++SAC H G ++ G  +      +  I   I  +  M+ M  R G +++
Sbjct: 389 KLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMED 447

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A    Q+M    + + + TLIS   A G
Sbjct: 448 AKRVFQEMATR-DVVSYNTLISGFAAHG 474


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/476 (40%), Positives = 294/476 (61%), Gaps = 10/476 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +K TY  +L AC+   D+ LG+ +H  ++  +   ++ V N LV MY  C    E  R V
Sbjct: 346 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTE-ARAV 404

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-------QISGVCPDEITMVTVLSA 121
           FD+M +R  +SW+ +I  Y R  L  +A  LF+QM           V PD +  VT+L+A
Sbjct: 405 FDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNA 464

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS- 180
           C D+ ALE GK V        ++    +  A+++++ KCG++++  ++F  +  R  V  
Sbjct: 465 CADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQL 524

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++IA  A  G+  EA+ LF  M   GV PD  +FV +L ACSH GL D+G+ YF SM 
Sbjct: 525 WNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMT 584

Query: 241 NDF-GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            ++  +   I+H+GC+ D+L R GR+KEA EF++K+P++ + + W +L++AC    +LK 
Sbjct: 585 TEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKR 644

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A+ +  +L+  EP   + YV LS+IYA+L +W    K+R+ M ++G+KK  G + IE+  
Sbjct: 645 AKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGK 704

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F  GD +H +++EI E L ++  +MK+ GYVP T  VL  ++E++KE  L  HSE+
Sbjct: 705 YMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSER 764

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA  L+ TP GTP+R+ KNLRVC+DCH+ATK ISKI  R+IVVRD  RFH FKD
Sbjct: 765 LAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKD 820



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 52/322 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+   K     +L AC+    +  G+ +H  +    F  ++ V N ++ MYG C G
Sbjct: 238 MLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRC-G 296

Query: 61  GIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E  RKVFD M E  RD VSW+ M+  Y       DAI L+++MQ+     D++T V++
Sbjct: 297 AVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRA---DKVTYVSL 353

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSAC+    + +G+ +   I    + ++V + NAL+ M+AKCG   +A  +F  M  R+I
Sbjct: 354 LSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 413

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-------AGVPPDDVAFVGLLSACS------- 224
           +SWT++I+         EA  LF++MLE         V PD +AFV +L+AC+       
Sbjct: 414 ISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQ 473

Query: 225 ----------------------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
                                        CG +++GR  FD + +     P ++ +  M+
Sbjct: 474 GKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSR----PDVQLWNAMI 529

Query: 257 DMLCRSGRVKEAHEFIQKMPIE 278
            +  + G+  EA +   +M +E
Sbjct: 530 AVYAQFGQSHEALKLFWRMEME 551



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 174/388 (44%), Gaps = 43/388 (11%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIE 63
            V     TY  +L+ CA    L  G+ +H   +K      ++ + N +V MY  C+   +
Sbjct: 38  AVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGD 97

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             +  FD + +R+  SW+ ++  +A  G S + +    +M+  GV PD +T +T L +C 
Sbjct: 98  -AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 156

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIVSWT 182
           D  +L  G  +   +    +     + NAL++M+ KCG +  A ++F  M   R ++SW+
Sbjct: 157 DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 216

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS------------------ 224
            +    A+HG   EA+  F  ML  G+     A V +LSACS                  
Sbjct: 217 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 225 -----------------HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
                             CG V++ R+ FD+M      +  +  +  M+     + R K+
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDE---ALRDVVSWNIMLSAYVHNDRGKD 333

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A +  Q+M + A+ + + +L+SAC +  ++ L   + K+++ +E   E N ++ + + + 
Sbjct: 334 AIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL--EKNVIVGNALVSM 391

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLI 355
             +    T+ R V DK   + I   T I
Sbjct: 392 YAKCGSHTEARAVFDKMEQRSIISWTTI 419


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +LKA        +G+ +H   +K+ + DD++V + L+ MY  C G
Sbjct: 156 MLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC-G 214

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD++  ++ VSW+A+I G+AR G     + +F +MQ +G      T  +V S
Sbjct: 215 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 274

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +GALE GKWV + + K     S  + N ++DM+AK G +  A K+F  ++ + +V+
Sbjct: 275 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVT 334

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A +G G EAV  FEEM + GV  + + F+ +L+ACSH GLV +G++YFD MK
Sbjct: 335 WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK 394

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P+I+HY  +VD+L R+G + +A  FI KMP++    +W  L+ +C      K+ 
Sbjct: 395 -EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIG 453

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W+   ++R++M   G+KK P  + +E++N 
Sbjct: 454 QFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENS 513

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +S+EIY+  +E+  +++KAGYVP T  VLL ++E++++  L  HSEK+
Sbjct: 514 VHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKI 573

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AFAL+  P G  IRI+KN+R+C DCHSA ++ISK++ REIVVRD +RFHHF
Sbjct: 574 ALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHF 626



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 13/288 (4%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  ++ ACA    L+  +++H  +   QF   + + N+L+H+Y  C G +   R+VFD M
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKC-GAVADARRVFDGM 125

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
             RD  SW+++I GYA+  +  +A+ L   M      P+  T  ++L A     +  +G+
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + +   K   +  V + +AL+DM+A+CG +D A+ +F  +  +  VSW ++IAG A  G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
            G   + +F EM   G       +  + SA +  G +++G+     M      I   E  
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHM------IKSGERL 299

Query: 253 GCMV-----DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              V     DM  +SG + +A +   ++  + + + W ++++A    G
Sbjct: 300 SAFVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 284/474 (59%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV P+         ACAGI  +  G  +H  V    +  DI + NTLV++Y  C G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC-G 496

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    +F E+  +D ++W+ +I G+ +  L   A+ +F +M  +G   +  T ++ +S
Sbjct: 497 RSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAIS 556

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L  ++ GK V     K        + NALI ++ KCG ++ A  +F  M+ R  VS
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I   + HGRGLEA+ LF++M + G+ P+DV F+G+L+ACSH GLV++G  YF SM 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +G+ P  +HY C+VD+L R+G++  A  F+ +MPI AN +IWRTL+SAC     +++ 
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIG 736

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K L+  EP   ++YVLLS+ YA   +W  + ++R++M  RG++K PG + IE+ N 
Sbjct: 737 ELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNA 796

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD+ H  S +IY+ L E+  ++ K GY      +  +  +E K+     HSEKL
Sbjct: 797 VHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKL 856

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF L+  PP  P+R++KNLRVC+DCHS  K  S++  REIV+RD +RFHHF 
Sbjct: 857 AVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFN 910



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 154/295 (52%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN+FTYP +L+ C   G + LG+ +H   +K  F  D++V   L+ MY S  G
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY-SKYG 395

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  RK+ + + +RD VSW++MI GY +     +A+  F++MQ  GV PD I + +  S
Sbjct: 396 CLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  + A+  G  + + +        + + N L++++A+CG  ++A  LFR +  +  ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT 515

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G        +A+ +F +M +AG   +   F+  +SA ++   + +G++      
Sbjct: 516 WNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              G   + E    ++ +  + G +++A     +M +  N + W T+I++C   G
Sbjct: 576 KT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 13/290 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   +L ACA +GDL  GK +H  +LK     D   + +L+ +Y  C G IE 
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC-GDIET 298

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+     + V W+ M+  Y ++     + ++F QMQ +G+ P++ T   +L  CT 
Sbjct: 299 AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTC 358

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G +E+G+ + S   K      + +   LIDM++K G +DKA K+   +  R +VSWTS+
Sbjct: 359 TGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSM 418

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREYFDSM 239
           IAG   H    EA+A F+EM + GV PD++      SAC+       GL    R Y    
Sbjct: 419 IAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY 478

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             D  I      +  +V++  R GR +EA    +++    + I W  LIS
Sbjct: 479 AADISI------WNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLIS 521



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 166/368 (45%), Gaps = 46/368 (12%)

Query: 17  LKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           L+AC G G+   L   +H   +    G D  + N L+ +Y    G +   R+VF E+S R
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAK-NGLVWQARQVFKELSSR 107

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D VSW AM+ GYA+ GL  +A  L+ QM  + V P    + +VLSACT       G+ + 
Sbjct: 108 DHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIH 167

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           + + KQ       + NALI ++   G    A ++F  M     V++ ++I+G A  G G 
Sbjct: 168 AQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGE 227

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHY 252
            A+ +F+EM  +G+ PD V    LL+AC+  G + KG++   Y       F  I +    
Sbjct: 228 CALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE---- 283

Query: 253 GCMVDMLCRSGRVKEAHEF----------------------------------IQKMPIE 278
           G ++D+  + G ++ AH+                                   +Q   I 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTK 336
            N   +  ++  C   G+++L E I    I N       YV  +L  +Y+K    +K  K
Sbjct: 344 PNQFTYPCILRTCTCTGQIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYGCLDKARK 402

Query: 337 IREVMDKR 344
           I E+++KR
Sbjct: 403 ILEMLEKR 410



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 145/286 (50%), Gaps = 5/286 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            V P  +    VL AC        G+ +H  V K  F  +  V N L+ +Y    G  +L
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF-GSFKL 197

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF +M   D V+++ +I G+A+ G    A+ +F +MQ+SG+ PD +T+ ++L+AC  
Sbjct: 198 AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACAS 257

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +G L+ GK + S++ K  ++       +L+D++ KCGD++ A  +F   +   +V W  +
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDF 243
           +          ++  +F +M   G+ P+   +  +L  C+  G ++ G +    S+KN F
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
                +   G ++DM  + G + +A + ++ +  + + + W ++I+
Sbjct: 378 ESDMYVS--GVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIA 420


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/457 (41%), Positives = 299/457 (65%), Gaps = 6/457 (1%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG--RKVFDEMSERDSVSW 80
           + D  +   +H  V K        V NT++  Y    GG +LG  RK+FD M +RD VSW
Sbjct: 205 VPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAK-GGGHDLGAARKLFD-MMDRDVVSW 262

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFI 138
           + MI  YA+ GLST+A+ L+ +M I G  V  + +T+  VL AC   GA++ GK + + +
Sbjct: 263 NTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQV 322

Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
            +  +  +V +  +++DM++KCG V+ A K F+ + G+ I+SW+++IAG  MHG G EA+
Sbjct: 323 VRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEAL 382

Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
            +F +M ++G+ P+ + F+ +L+ACSH GL+ +GR ++++MK +FGI P +EHYGCMVD+
Sbjct: 383 HVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDL 442

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318
           L R+G + EA+  I++M ++ +  +W  L+SAC     ++LA+   +RL   +  +   Y
Sbjct: 443 LGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYY 502

Query: 319 VLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIY 378
           VLLS+IYA+   W++  ++R ++  RG++K PG + +EL  + + F  GDKSH Q KEIY
Sbjct: 503 VLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIY 562

Query: 379 EMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIV 438
             L+++  ++  AGYVP T  VL D++ E++E  L  HSEKLA+AFAL+ +  G+ I ++
Sbjct: 563 AYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVI 622

Query: 439 KNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KNLRVC DCH+A K I+K+  REI++RD  RFHHFKD
Sbjct: 623 KNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKD 659



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 2/166 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N  T   VL ACA  G +  GK +H  V++    D+++V  ++V MY  C G +E+  K 
Sbjct: 295 NAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKC-GKVEMAWKA 353

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F ++  ++ +SWSAMI GY   G   +A+ +F  M+ SG+ P+ IT +TVL+AC+  G L
Sbjct: 354 FQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLL 413

Query: 129 EVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
             G+ W  +   +  +   V     ++D+  + G +D+A  L + M
Sbjct: 414 SEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM 459



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 11/268 (4%)

Query: 29  GKSVHGAVLKFQ-FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
           G+ +H   L+   F  D +  + L+HMY  C   ++  R+ FDE+   + V  +AM  G 
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLD-ARRAFDEIPTPNPVIVTAMASGC 165

Query: 88  ARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
            R  L    + +FR M  SG     DE   +  LSA   +    +   + + + K  ++ 
Sbjct: 166 MRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDG 225

Query: 146 SVGLCNALIDMFAKCG--DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             G+ N +ID +AK G  D+  A KLF  M+ R +VSW ++IA  A +G   EA+ L+ +
Sbjct: 226 QTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSK 284

Query: 204 MLEAG--VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
           ML  G  V  + V    +L AC+H G +  G+   + +    G+   +     +VDM  +
Sbjct: 285 MLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVR-MGLEDNVYVGTSVVDMYSK 343

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            G+V+ A +  QK+  + N + W  +I+
Sbjct: 344 CGKVEMAWKAFQKIKGK-NILSWSAMIA 370


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/459 (42%), Positives = 289/459 (62%), Gaps = 1/459 (0%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ACA + DL LGK +H  + K     D+   N+L+ MY    G I+    +FD+M  +D
Sbjct: 342 LRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAK-AGLIDQATTLFDQMVVKD 400

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           +VS+SA++ GY + G + +A  +FR+MQ   V PD  TMV+++ AC+ L AL+ GK    
Sbjct: 401 TVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHG 460

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            +  + +     +CNALIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G E
Sbjct: 461 SVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKE 520

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A ALF +M      PDDV F+ L+SACSH GLV +G+ +F  M + +GI P++EHY  MV
Sbjct: 521 ATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMV 580

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R G + EA++FIQ MP++A+  +W  L+ AC     + L + ++  +    P    
Sbjct: 581 DLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTG 640

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           N+VLLS+I++   R+++  ++R +  ++G KK PG + IE++  ++ F+ GD+SH QS E
Sbjct: 641 NFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSE 700

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIR 436
           IY+ LD +   + K GY   TS VL D+ EE+KE AL  HSEKLAIAF +L       I 
Sbjct: 701 IYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIF 760

Query: 437 IVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + KNLRVC DCH+  K+++ +  R I+VRD +RFHHFK+
Sbjct: 761 VTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKN 799



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 169/384 (44%), Gaps = 57/384 (14%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN +T+PFVLKAC+ + DL   ++VH    +     D+ V   LV +Y  C         
Sbjct: 127 PNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKC-ASFRHAAT 185

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VF  M  RD V+W+AM+ GYA  G  +D I     MQ     P+  T+V +L      GA
Sbjct: 186 VFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGA 244

Query: 128 LEVGKWVESFIEKQMV----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           L  G+ V ++  +          V +  AL+DM+AKCG +  A ++F +M  R  V+W++
Sbjct: 245 LSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSA 304

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG---VPPDDVAFV----------------------- 217
           ++ G  + GR LEA +LF++ML  G   + P  VA                         
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS 364

Query: 218 ----------GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
                      LLS  +  GL+D+    FD M     ++     Y  +V    ++G+  E
Sbjct: 365 GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM-----VVKDTVSYSALVSGYVQNGKADE 419

Query: 268 AHEFIQKMP---IEANPIIWRTLISACCARGELKLAE----SITKRLIGNEPMHESNYVL 320
           A    +KM    ++ +     +LI AC     L+  +    S+  R I +E    S    
Sbjct: 420 AFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASE---TSICNA 476

Query: 321 LSHIYAKLLRWEKKTKIREVMDKR 344
           L  +YAK  R +   +I +VM  R
Sbjct: 477 LIDMYAKCGRIDLSRQIFDVMPAR 500



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 8/288 (2%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK----FQFGDDIHVQNTLVHMYGSCEGGI 62
           +PN  T   +L   A  G L+ G++VH   ++        D + V   L+ MY  C G +
Sbjct: 226 APNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKC-GHL 284

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSA 121
               +VF+ M+ R+ V+WSA++GG+   G   +A  LF+ M   G+C     ++ + L A
Sbjct: 285 VYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRA 344

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L  L +GK + + + K  ++  +   N+L+ M+AK G +D+A  LF  M  +  VS+
Sbjct: 345 CANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSY 404

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++++G   +G+  EA  +F +M    V PD    V L+ ACSH   +  G+    S+  
Sbjct: 405 SALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIV 464

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             GI  +      ++DM  + GR+  + +    MP   + + W T+I+
Sbjct: 465 R-GIASETSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNTMIA 510



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V P+  T   ++ AC+ +  L  GK  HG+V+      +  + N L+ MY  C G
Sbjct: 427 MQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKC-G 485

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+L R++FD M  RD VSW+ MI GY   GL  +A  LF  M+     PD++T + ++S
Sbjct: 486 RIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLIS 545

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G +  GK W      K  +   +     ++D+ A+ G +D+A +  + M  +  V
Sbjct: 546 ACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADV 605

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
             W +++    +H + ++       M++   P     FV L +  S  G  D+  E
Sbjct: 606 RVWGALLGACRVH-KNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAE 660



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 114/258 (44%), Gaps = 13/258 (5%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L R +FD++       ++A+I  Y+  G +          +     P+  T   VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ L  L   + V     +  ++  + +  AL+D++AKC     A  +FR M  R +V
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
           +W +++AG A+HG+  + +A    +++    P+    V LL   +  G + +GR  +  S
Sbjct: 197 AWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 239 MK------NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           ++      +  G++        ++DM  + G +  A    + M +  N + W  L+    
Sbjct: 256 VRACSLHDHKDGVLVGTA----LLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVGGFV 310

Query: 293 ARGELKLAESITKRLIGN 310
             G +  A S+ K ++  
Sbjct: 311 LCGRMLEAFSLFKDMLAQ 328


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/412 (45%), Positives = 260/412 (63%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I   R+VFD M  ++ +SW+AM+  YA       A++LF  M+   V PD IT+ TVL  
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPP 302

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C +L A  VGK +   I+++ +  ++ L NAL+DM+A CG +  A ++F  M+ R ++SW
Sbjct: 303 CGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISW 362

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS+I+    HG G EAV LFE+ML  G+ PD +AFV +L+ACSH GL+  G+ YFDSM +
Sbjct: 363 TSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTS 422

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            + IIPK EHY CMVD+L R+G + EA++FI  M IE N  +W  L+ AC     + +  
Sbjct: 423 RYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGL 482

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361
                L    P     YVLLS++YA+  RW   T +R VM  +G+KK PG++++EL +++
Sbjct: 483 VAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQV 542

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           + F  GD+ H QS+ IY  LDE+  K++  GY P     L D+ EEDKED L+ HSEKLA
Sbjct: 543 HTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLA 602

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           IAF LL T PGT IR+  NLR C+DCH A K IS I  REIV++D +R HH 
Sbjct: 603 IAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHI 654



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 39/308 (12%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ +TYP  LK+C+   DL LG  +H AV K +   +++V ++ + MY  C G  E   +
Sbjct: 121 PDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRC-GRPEDAYR 179

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLG 126
           VFD M  RD VSW+AMI G+AR+GL   AI++F+Q  +  G  PD  TM  +L A  +  
Sbjct: 180 VFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGN-- 237

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
                                          AK  D+    ++F +M  + ++SW +++A
Sbjct: 238 -------------------------------AKPDDIRFVRRVFDNMQFKELISWNAMLA 266

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
             A +   ++AV LF  M +  V PD +    +L  C        G+   + +K    + 
Sbjct: 267 VYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRK-NMC 325

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
           P +     ++DM    G +K+A E    M    + I W ++ISA    G  + A  + ++
Sbjct: 326 PNLLLENALMDMYASCGCLKDAREIFDLMSAR-DVISWTSIISAYGKHGHGREAVDLFEK 384

Query: 307 LIGN--EP 312
           ++G   EP
Sbjct: 385 MLGQGLEP 392



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 119/261 (45%), Gaps = 40/261 (15%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P+  T   VL  C  +   ++GK +H  + +     ++ ++N L+ MY SC G ++  
Sbjct: 289 VEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASC-GCLKDA 347

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R++FD MS RD +SW+++I  Y + G   +A+DLF +M   G+ PD I  V VL+AC+  
Sbjct: 348 REIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHA 407

Query: 126 GALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           G L  GK + +S   +  +         ++D+  + G +++A     +M           
Sbjct: 408 GLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTM----------- 456

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
                          L E        P++  +  LL AC     +D G    D   N F 
Sbjct: 457 ---------------LIE--------PNERVWGALLQACRIHSNMDIGLVAAD---NLFS 490

Query: 245 IIP-KIEHYGCMVDMLCRSGR 264
           ++P +  +Y  + +M  R+GR
Sbjct: 491 LVPEQTGYYVLLSNMYARAGR 511



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 136/308 (44%), Gaps = 26/308 (8%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKF---QFGDDIHVQNTLVHMYGSCEGGIELGRKVF--- 69
           +L AC     L   ++ H  +L           H    L+  Y +C   + L   V    
Sbjct: 18  LLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSA-LPLAHTVLESS 76

Query: 70  --DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VC-PDEITMVTVLSACTDL 125
             D  S   +V ++ +I       L  DA+ LF  M+  G  C PD  T    L +C+  
Sbjct: 77  SPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSAS 136

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G  + S + K  ++R+V + ++ I M+++CG  + A ++F  M  R +VSW ++I
Sbjct: 137 KDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMI 196

Query: 186 AGLAMHGRGLEAVALFEE-MLEAGVPPDDVAFVGLLSACSHCGLVDKG--REYFDSMKND 242
           AG A  G    A+ +F++ ++  G  PD     G+L A  +    D    R  FD+M+  
Sbjct: 197 AGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQ-- 254

Query: 243 FGIIPKIEHYGCMVDMLCRSG---RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                ++  +  M+ +   +    +  E    ++K  +E + I   T++  C   GEL  
Sbjct: 255 ---FKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPC---GELS- 307

Query: 300 AESITKRL 307
           A S+ KR+
Sbjct: 308 AFSVGKRI 315


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/501 (39%), Positives = 302/501 (60%), Gaps = 44/501 (8%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC---------------- 58
           FVL  C  + DL +G+   G ++K   G  + V N +++MY  C                
Sbjct: 129 FVL--CTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNER 186

Query: 59  ---------EG-----GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
                    EG     G+E GR VFDEM ER+ V W+ MI GY   G S +   L  +M 
Sbjct: 187 NVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMV 246

Query: 105 IS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGD 162
           +   +  + +T+ ++LSAC   G + +G+WV  +  K M     + +  AL+DM+AKCG 
Sbjct: 247 LRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGP 306

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +D A K+F+ +  R +V+W +++ GLAMHGRG   + +F +M+E    PDD+ F+ +LSA
Sbjct: 307 IDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSA 365

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
           CSH GLVD+G  YF S+++++G  PKIEHY CMVD+L R+G ++EA   I+KMP+  N +
Sbjct: 366 CSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEV 425

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           +  +L+ +C A G+L+L E I + LI  +  +   +VLLS++Y    + +K   +R+++ 
Sbjct: 426 VLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILK 485

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
            +G++K+PG + I +   I++F  GDKSH  +KEIY  L+ M ++++ AGYVP T+  + 
Sbjct: 486 SKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVF 545

Query: 403 DINE---------EDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
             ++         E+KE AL  HSEKLA+ F  + T PG P+ I KNLR+C DCHSA K 
Sbjct: 546 PGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKI 605

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
           +SKIYNREIV+RDR+RFH FK
Sbjct: 606 VSKIYNREIVIRDRNRFHCFK 626



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 40/331 (12%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGD---DIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           +L++CA    L+ GK +H  +L         +  + N L H+Y SC G     R +F ++
Sbjct: 21  LLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASC-GVTSSARHLFYQI 79

Query: 73  --SERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
             S +D   W+ ++    + G   ++    F++M+  GV  D++ M++V   CT +  L 
Sbjct: 80  PRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLG 139

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV----- 184
           +G+  +  + K  +   V +CNA+++M+ KCG V++  ++F  MN R +VSW+++     
Sbjct: 140 MGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVV 199

Query: 185 --------------------------IAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFV 217
                                     IAG   +G   E   L +EM L   +  + V   
Sbjct: 200 KWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLS 259

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            +LSAC+  G V  GR          G    I     +VDM  + G +  A +  + +P 
Sbjct: 260 SILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP- 318

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLI 308
           + N + W  ++      G  K    I  ++I
Sbjct: 319 KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMI 349



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH--VQNTLVHMYGSC 58
           +L + +  N  T   +L ACA  GD+ +G+ VH   LK   G ++H  V   LV MY  C
Sbjct: 246 VLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALK-GMGREMHIMVGTALVDMYAKC 304

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G I++  KVF  + +R+ V+W+AM+GG A  G     +D+F +M I    PD++T + V
Sbjct: 305 -GPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDLTFMAV 362

Query: 119 LSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           LSAC+  G ++ G  +  S   +      +     ++D+  + G +++A+ L + M
Sbjct: 363 LSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKM 418


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/472 (39%), Positives = 290/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G     F +  +L   A   +L++G+ +H   +      +I V N+LV MY  C G    
Sbjct: 395 GFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKC-GEFGE 453

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++F +++ + SV W+AMI  Y + GL  D + LF +MQ + +  D  T  +++ AC  
Sbjct: 454 ANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACAS 513

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L +GK + S I       +V   +AL+DM+AKCG +  AL++F+ M  R  VSW ++
Sbjct: 514 LASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNAL 573

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  A +G G   + LFEEM+ +G+ PD V+ + +L ACSHCGLV++G +YFDSM   + 
Sbjct: 574 ISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYK 633

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           ++PK EHY   +DMLCR GR  EA + + +MP E + I+W +++++C      +LA+   
Sbjct: 634 LVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAA 693

Query: 305 KRLIGNEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            +L   + + ++  YV +S+IYA    W+   K+++ M +RG+KK+P  + +E+ ++ + 
Sbjct: 694 NQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHV 753

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F   DK+H Q +EI + LDE+  KM K GY P +S  L +++EE K ++L  HSE++AIA
Sbjct: 754 FTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIA 813

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           FAL+ TP G+PI ++KNLR C DCH+A K ISKI  REI VRD  RFHHF+D
Sbjct: 814 FALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRD 865



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 5/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+  +   +L        +N  + VH  V+K  +   + V N+L+  Y     
Sbjct: 189 MGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRS 248

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L  ++F+++ ERDSV+++A++ GY++ G + +AI+LF +MQ  G  P E T   +L+
Sbjct: 249 -LGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILT 307

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   L  +E G+ V  F+ K     +V + NAL+D ++K   V +A KLF  M     +S
Sbjct: 308 AGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGIS 367

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           +  ++   A +GR  E++ LF+E+   G    +  F  LLS  +    +D GR+ +  ++
Sbjct: 368 YNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTI 427

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             D   I +I     +VDM  + G   EA+     + I+++ + W  +IS+   +G
Sbjct: 428 VTD--AISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSS-VPWTAMISSYVQKG 480



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 154/308 (50%), Gaps = 9/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +++ G +PN +   F++K+    GDLN  + +   +       +I   NT++  Y    G
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPH----KNIFSTNTMIMGYIK-SG 146

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD M +R +V+W+ +IGGYA+     +A  LF +M   G+ PD +++ T+LS
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             T+  ++   + V S + K   + ++ + N+L+D + K   +  A +LF  +  R  V+
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           + +++ G +  G   EA+ LF +M E G  P +  F  +L+A      ++ G++     +
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K +F  +  +     ++D   +  RV EA +   +MP E + I +  L++     G +K 
Sbjct: 327 KCNF--VWNVFVANALLDFYSKHDRVVEASKLFYEMP-EVDGISYNVLVTCYAWNGRVKE 383

Query: 300 AESITKRL 307
           +  + K L
Sbjct: 384 SLELFKEL 391



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 33/193 (17%)

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK------------------------- 168
           V++ I K   N +    N L+  F + GD++ A K                         
Sbjct: 88  VDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGN 147

Query: 169 ------LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
                 LF SM  RT V+WT +I G A + +  EA  LF EM   G+ PD V+   LLS 
Sbjct: 148 LSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSG 207

Query: 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI 282
            +    V++ R+   S     G    +     ++D  C++  +  A +    +P E + +
Sbjct: 208 FTEFDSVNEVRQ-VHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIP-ERDSV 265

Query: 283 IWRTLISACCARG 295
            +  L++     G
Sbjct: 266 TFNALLTGYSKEG 278


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 294/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    PN FT+  +LKA     D  +G  +H   +K  + +D++V + L+ MY  C G
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC-G 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD++  ++ VSW+A+I G+AR G    A+ +F +MQ +G      T  ++ S
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFS 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
               +GALE GKWV + + K     +  + N ++DM+AK G +  A K+F  +  + +V+
Sbjct: 262 GLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVT 321

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A +G G EAV+ FEEM ++G+  + + F+ +L+ACSH GLV +G+ YFD +K
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIK 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P+IEHY  +VD+L R+G +  A  FI KMP+E    +W  L++AC      K+ 
Sbjct: 382 -EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVG 440

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA    W+   ++R++M   G+KK P  + +E+ N 
Sbjct: 441 QFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNS 500

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +++EIY+M DE+  K++K GYVP    VLL ++E+++E  L  HSEK+
Sbjct: 501 VHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKI 560

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL++ P G  IRI+KN+R+C DCHSA K+ISK++ REIVVRD +RFHHF +
Sbjct: 561 ALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSN 615



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 147/297 (49%), Gaps = 3/297 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y   + ACA   +L+  + +HG +   +F  D  + N+L+H+Y  C G +   
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKC-GSVVEA 105

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            KVFD+M ++D VSW+++I GYA+  +  +AI L   M      P+  T  ++L A    
Sbjct: 106 HKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
               +G  + +   K   +  V + +AL+DM+A+CG +D A  +F  ++ +  VSW ++I
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A  G G  A+ +F EM   G       +  + S  +  G +++G+     M      
Sbjct: 226 SGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQK 285

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +        M+DM  +SG + +A +  +++ +  + + W ++++A    G  K A S
Sbjct: 286 LTAFVG-NTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYGLGKEAVS 340


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/476 (41%), Positives = 284/476 (59%), Gaps = 23/476 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  +      +L ACA  G L+ GK VH  +       ++ V N L+ MY  C G
Sbjct: 343 MEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    VF  M  +D +SW+ MIG                        PD  TM  +L 
Sbjct: 402 SMDGANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACILP 440

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK +  +I +   +    + NAL+D++ KCG +  A  LF  +  + +VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +I+G  MHG G EA+A F EM +AG+ PD+V+F+ +L ACSH GL+++G  +F  MK
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           NDF I PK+EHY CMVD+L R+G + +A+EFI+ +PI  +  IW  L+  C    +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  +WE+  ++RE + K+G++K PG + IE+  +
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 361 IYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +  FV G+ S H  SK+I  +L +M RKMK+ GY P T   L++ +E  KE AL  HSEK
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 740

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL  PP   +R+ KNLRVC DCH   KF+SK   REIV+RD +RFHHFK+
Sbjct: 741 LAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKN 796



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 158/338 (46%), Gaps = 60/338 (17%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  VL+ CAG   L  GK VH  +       D  +   LV +Y +C G ++ GR+VFD 
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATC-GDLKEGRRVFDT 159

Query: 72  MS---------------------------------------------------ERDSVSW 80
           M                                                    +RD +SW
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISW 219

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           ++MI GY   GL+   +++++QM   G+  D  T+++VL  C + G L +GK V S   K
Sbjct: 220 NSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
               R +   N L+DM++KCGD+D AL++F  M  R +VSWTS+IAG    GR   A+ L
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            ++M + GV  D VA   +L AC+  G +D G++  D +K +  +   +     ++DM  
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYT 398

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + G +  A+     M ++ + I W T+I      GELK
Sbjct: 399 KCGSMDGANSVFSTMVVK-DIISWNTMI------GELK 429



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 26/291 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  +  T   VL  CA  G L+LGK+VH   +K  F   I+  NTL+ MY  C G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKC-G 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF++M ER+ VSW++MI GY R G S  AI L +QM+  GV  D +   ++L 
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILH 360

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+L+ GK V  +I+   +  ++ +CNAL+DM+ KCG +D A  +F +M  + I+S
Sbjct: 361 ACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIIS 420

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W ++I  L                      PD      +L AC+    +++G+E     +
Sbjct: 421 WNTMIGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYIL 459

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N +     + +   +VD+  + G +  A      +P   + + W  +IS 
Sbjct: 460 RNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMISG 507



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 118/256 (46%), Gaps = 30/256 (11%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
           G+ E  +EL      + SE ++ ++S+++   A     TD   +   ++ + V  DE+  
Sbjct: 80  GNLENAMEL--VCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLG 137

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-- 173
           + ++S     G L+ G+ V   +EK    ++V L N ++  +AK GD  +++ LF+ M  
Sbjct: 138 LKLVSLYATCGDLKEGRRVFDTMEK----KNVYLWNFMVSEYAKIGDFKESICLFKIMVE 193

Query: 174 ------------------NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                               R ++SW S+I+G   +G     + ++++M+  G+  D   
Sbjct: 194 KGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLAT 253

Query: 216 FVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            + +L  C++ G +  G+     ++K+ F    +I     ++DM  + G +  A    +K
Sbjct: 254 IISVLVGCANSGTLSLGKAVHSLAIKSTFE--RRINFSNTLLDMYSKCGDLDGALRVFEK 311

Query: 275 MPIEANPIIWRTLISA 290
           M  E N + W ++I+ 
Sbjct: 312 MG-ERNVVSWTSMIAG 326



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
           +R    ++A I  + +LG   +A++L    Q S +  +  T  +VL  C    +L  GK 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTDGKK 120

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           V S I+   V     L   L+ ++A CGD+ +  ++F +M  + +  W  +++  A  G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 194 GLEAVALFEEMLEAGVP----------------PDDVAFVGLLSACSHCGLVDKGREYFD 237
             E++ LF+ M+E G+                  D +++  ++S     GL ++G E + 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 238 SM 239
            M
Sbjct: 241 QM 242


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 297/501 (59%), Gaps = 35/501 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F +  ++KACA +G + LGK VH   +  ++ +D  V+++LV MY  C   ++  + 
Sbjct: 40  PDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRL-LDCAKA 98

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP------- 110
           VFD +  ++++SW+AM+ GYA+ G   +A++LFR++           ISG          
Sbjct: 99  VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEA 158

Query: 111 ---------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
                          D + + +++ AC +L A   G+ V   +     +  V + NALID
Sbjct: 159 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALID 218

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKC DV  A  +F  M  R +VSWTS+I G+A HG+  +A+AL++EM+  GV P++V 
Sbjct: 219 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVT 278

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FVGL+ ACSH G V KGRE F SM  D+GI P ++HY C++D+L RSG + EA   I  M
Sbjct: 279 FVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 338

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGN-EPMHESNYVLLSHIYAKLLRWEKK 334
           P   +   W  L+SAC  +G+ ++   I   L+ + +P   S Y+LLS+IYA    W K 
Sbjct: 339 PFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKV 398

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGY 393
           ++ R  +    ++K PG + +E+  E   F  G+ SH   ++I+ +L ++  +M+ + GY
Sbjct: 399 SEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGY 458

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP TS +L D++E++KE  L  HSE+ A+A+ LLK  PGTPIRIVKNLRVC DCH   K 
Sbjct: 459 VPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKH 518

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
           IS+I  REI+VRD  R+HHFK
Sbjct: 519 ISEITEREIIVRDATRYHHFK 539



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 42/291 (14%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAI-DLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           M  RD ++W++++    +  LS   +         SG+ PD+     ++ AC +LG++++
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 131 GKWVE-SFIEKQMVNRSVGLCNALIDMFAKC----------------------------- 160
           GK V   FI  +  N  V + ++L+DM+AKC                             
Sbjct: 61  GKQVHCHFIVSEYSNDDV-VKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYA 119

Query: 161 --GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFV 217
             G  ++AL+LFR +  + + SWT++I+G    G+GLEA ++F EM    V   D +   
Sbjct: 120 KSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLS 179

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++ AC++      GR+    +    G    +     ++DM  +   V  A +   +M  
Sbjct: 180 SIVGACANLAASIAGRQ-VHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR- 237

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
             + + W +LI      G+ + A ++   ++  G +P +E  +V L  IYA
Sbjct: 238 HRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKP-NEVTFVGL--IYA 285


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 294/472 (62%), Gaps = 4/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  ++     V++ACA  GD  +G SVHG +L+     D+ +  +LV MY    G  + 
Sbjct: 199 GLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAK-NGLFDQ 257

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VF+ M  R+ VSWSA+I   A+ G + +A+ LFR MQ+SG+ P+   +V  L AC+D
Sbjct: 258 ARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSD 317

Query: 125 LGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           LG L++GK +  FI + + ++R VG   A+IDM++KCG +  A  LF  +  R ++SW  
Sbjct: 318 LGLLKLGKSIHGFILRTLELDRMVG--TAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNV 375

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +IA    HGRG +A++LF+EM    V PD   F  LLSA SH GLV++G+ +F+ M N++
Sbjct: 376 MIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEY 435

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           GI P  +H  C+VD+L RSG V+EA+  +  +  +    I   L+S C    +L+L ES 
Sbjct: 436 GIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGEST 495

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            ++++  +P       L+S++YA    W K  ++R++M   G KK PG + IE+   ++ 
Sbjct: 496 AEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHT 555

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV  D+SH Q ++I +M+ ++  +M+K GY+P T  V  D+ E  KE  L++HSE+LA A
Sbjct: 556 FVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATA 615

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F LL T PGT + ++KNLRVC DCH A K++SKI +REIVVRD  RFHHFKD
Sbjct: 616 FGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKD 667



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 181/357 (50%), Gaps = 18/357 (5%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L     P+  T+   L ACA +GDL  G+ V        +G+DI V ++++++Y  C G 
Sbjct: 95  LPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKC-GA 153

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++   KVFD M +RD V+WS M+ G+   G    AI+++ +M+  G+  DE+ +V V+ A
Sbjct: 154 MDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQA 213

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C   G   +G  V  ++ +  +   V +  +L+DM+AK G  D+A ++F  M  R  VSW
Sbjct: 214 CAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSW 273

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++I+ LA +G   EA+ LF  M  +G+ P+    VG L ACS  GL+  G       K+
Sbjct: 274 SALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLG-------KS 326

Query: 242 DFGIIPKIEHYGCMV-----DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             G I +      MV     DM  + G +  A     K+ +  + I W  +I+ C A G 
Sbjct: 327 IHGFILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKV-VSRDLISWNVMIACCGAHGR 385

Query: 297 LKLAESITKRLIGNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
            + A S+ + +  NE  P H +   LLS +    L  E K     ++++ G++  PG
Sbjct: 386 GRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIE--PG 440


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/432 (42%), Positives = 279/432 (64%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++ + N L+ MY S  G +    +VF+ M ER  VSW++MI GYAR GLS  ++ LF +M
Sbjct: 258 ELTLNNCLLDMY-SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 316

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           +   + P+ ITM  +L AC  L ALE G+ +   I +   +    + NAL+DM+ KCG +
Sbjct: 317 EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 376

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A  LF  +  + +VSWT +IAG  MHG G EA+A F EM  +G+ PD+V+F+ +L AC
Sbjct: 377 GLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 436

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GL+D+G  +F+ M+N+  I PK EHY C+VD+L R+G + +A++FI+ MPIE +  I
Sbjct: 437 SHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATI 496

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+  C    ++KLAE + + +   EP +   YVLL++IYA+  +WE+  K+RE + +
Sbjct: 497 WGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGR 556

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG++K PG + IE+  +++ FV GD SH  + +I  +L +   +MK+ G+ P     L+ 
Sbjct: 557 RGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIK 616

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
            ++ +KE AL  HSEK+A+AF +L  PPG  +R+ KNLRVC DCH   KF+SK+  R+I+
Sbjct: 617 ADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDII 676

Query: 464 VRDRHRFHHFKD 475
           +RD +RFHHFKD
Sbjct: 677 LRDSNRFHHFKD 688



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 31/230 (13%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E  RK+FDE+ +RD +SW++MI GY   GLS   +DLF QM + G+  D  TMV+V   
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV--- 257

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                                    + L N L+DM++K G+++ A+++F +M  R++VSW
Sbjct: 258 ------------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 293

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MK 240
           TS+IAG A  G    +V LF EM +  + P+ +    +L AC+    +++G+E     ++
Sbjct: 294 TSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILR 353

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           N F +   + +   +VDM  + G +  A      +P E + + W  +I+ 
Sbjct: 354 NGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAG 400



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 5/216 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T   +L ACA +  L  G+ +HG +L+  F  D HV N LV MY  C G + L R 
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC-GALGLARL 381

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FD + E+D VSW+ MI GY   G  ++AI  F +M+ SG+ PDE++ +++L AC+  G 
Sbjct: 382 LFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGL 441

Query: 128 LEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVI 185
           L+ G    + +     +         ++D+ A+ G++ KA K  + M      + W +++
Sbjct: 442 LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 501

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            G  ++     A  + E + E  + P++  +  LL+
Sbjct: 502 CGCRIYHDVKLAEKVAEHVFE--LEPENTGYYVLLA 535



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 26/223 (11%)

Query: 98  DLFRQMQISGVCP----DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
           +L R M++    P    +  T  +VL  C DL +++ G+ + S I+   V     L + L
Sbjct: 83  NLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKL 142

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV---- 209
           + M+  CGD+ +  ++F  +    +  W  ++ G A  G   E+++LF+ M E G+    
Sbjct: 143 VFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE 202

Query: 210 ----------PPDDVAFVGLLSACSHCGLVDKGREYFDSM-----KNDFGIIPKIEHY-- 252
                       D +++  ++S     GL +KG + F+ M       D   +  +E    
Sbjct: 203 SARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLN 262

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            C++DM  +SG +  A +  + M  E + + W ++I+     G
Sbjct: 263 NCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREG 304


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 290/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML +G SPN+FT   V+KA A       G  +HG  +K  F  ++HV + L+ +Y +  G
Sbjct: 143 MLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY-TRYG 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  + VFD +  R+ VSW+A+I G+AR   +  A++LF+ M   G  P   +  ++  
Sbjct: 202 LMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFG 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  G LE GKWV +++ K          N L+DM+AK G +  A K+F  +  R +VS
Sbjct: 262 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 321

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A HG G EAV  FEEM   G+ P++++F+ +L+ACSH GL+D+G  Y++ MK
Sbjct: 322 WNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+ +  HY  +VD+L R+G +  A  FI++MPIE    IW+ L++AC      +L 
Sbjct: 382 KD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 440

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + +   +P     +V+L +IYA   RW    ++R+ M + G+KK P  + +E++N 
Sbjct: 441 AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENA 500

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ FV  D+ H Q +EI    +E+  K+K+ GYVP TS V++ ++++++E  L  HSEK+
Sbjct: 501 IHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKI 560

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFALL TPPG+ I I KN+RVC DCHSA K  SK   REI+VRD +RFHHFKD
Sbjct: 561 ALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKD 615



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 147/283 (51%), Gaps = 3/283 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +LK C     L  G+ VHG +++  F  D+ + NTL++MY  C G +E  RKVFD+M
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKC-GSLEEARKVFDKM 112

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ERD V+W+ +I GY++     DA+ LF QM   G  P+E T+ +V+ A         G 
Sbjct: 113 PERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGH 172

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +  F  K   + +V + +AL+D++ + G +D A  +F ++  R  VSW ++IAG A   
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
              +A+ LF+ ML  G  P   ++  L  ACS  G +++G+     M      +      
Sbjct: 233 GTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG- 291

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++DM  +SG + +A +   ++  + + + W +L++A    G
Sbjct: 292 NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHG 333



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 34/279 (12%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T+L  CT    L  G+ V   + + +    + + N L++M+AKCG +++A K+F  M  R
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-----CGLVDK 231
             V+WT++I+G + H R  +A+ LF +ML  G  P++     ++ A +      CG    
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLH 175

Query: 232 G---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           G   +  FDS          +     ++D+  R G + +A      +    N + W  LI
Sbjct: 176 GFCVKCGFDS---------NVHVGSALLDLYTRYGLMDDAQLVFDALE-SRNDVSWNALI 225

Query: 289 SA----CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           +     C     L+L + + +   G  P H S Y  L    +     E+   +   M K 
Sbjct: 226 AGHARRCGTEKALELFQGMLRE--GFRPSHFS-YASLFGACSSTGFLEQGKWVHAYMIKS 282

Query: 345 GMKKI--PGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           G K +   G+TL+++            S H +++I++ L
Sbjct: 283 GEKLVAFAGNTLLDM-------YAKSGSIHDARKIFDRL 314


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/507 (37%), Positives = 294/507 (57%), Gaps = 38/507 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEG 60
           G+  +  TY  ++ ACA +G   +GK +H  +LK +   +    + V N L+ +Y  C+ 
Sbjct: 284 GIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLY--CKN 341

Query: 61  G-IELGRKVFDEMSERDSVSWSAMIGGY-------------------------------A 88
             ++  RK+F  M  R+ ++W+A++ GY                               A
Sbjct: 342 NKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLA 401

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   + + LF+QM++ G  P +      L+AC+ LGALE G+ + + +       S+ 
Sbjct: 402 QNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLS 461

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           + NA+I M+AKCG V+ A  +F +M    +VSW S+IA L  HG G++A+ LF++ML+ G
Sbjct: 462 VGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG 521

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           V PD + F+ +L+ACSH GLV+KGR YF+SM   +GI P  +HY  MVD+ CR+G    A
Sbjct: 522 VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA 581

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              I  MP +    +W  L++ C   G + L     ++L    P ++  YVLLS+IYA +
Sbjct: 582 RIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADV 641

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            RW    K+R++M  + ++K P  + IE++N+++ F+  D  H +   +Y  L+++G +M
Sbjct: 642 GRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           KK GY+P T  VL D+  E KE AL+ HSEKLA+ F ++K PP   +R+ KN+R+C DCH
Sbjct: 702 KKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCH 761

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A KF+SK+  REI+VRDR RFHHFK+
Sbjct: 762 NAFKFMSKVARREIIVRDRKRFHHFKN 788



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 163/363 (44%), Gaps = 77/363 (21%)

Query: 8   PNKFTYPFVLKACA-GIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMY--GSCEGGIE 63
           P+ FT+  VL A    +G+      +H AV+K   G     V N L+ +Y   + E GI 
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIP 204

Query: 64  L-----GRKVFDEMSERDSVSWS-------------------------------AMIGGY 87
                  RK+FDEM +RD ++W+                               AMI GY
Sbjct: 205 CSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGY 264

Query: 88  ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
              G   +A+ L R+M+  G+  D+IT  T++SAC ++G+ ++GK + ++I K  +N + 
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNH 324

Query: 148 GLC----NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------- 184
             C    NALI ++ K   VD+A K+F +M  R I++W ++                   
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 185 ------------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                       I+GLA +G G E + LF++M   G  P D AF G L+ACS  G ++ G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           R+    + +  G    +     M+ M  + G V+ A      MP   + + W ++I+A  
Sbjct: 445 RQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALG 502

Query: 293 ARG 295
             G
Sbjct: 503 QHG 505



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 56/314 (17%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101
           D   + TL+  Y +  G +ELGR++F+   +  RDSV ++AMI GYA  G    A++LFR
Sbjct: 78  DAIARTTLITAYCAL-GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFR 136

Query: 102 QMQISGVCPDEITMVTVLSACTDL--GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159
            M+     PD+ T  +VLSA         + G+   + ++  M   S  + NAL+ ++ K
Sbjct: 137 AMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVK 196

Query: 160 --------CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA---- 207
                   C  +  A KLF  M  R  ++WT++I G   +     A  +FE M+E     
Sbjct: 197 RASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA 256

Query: 208 ---------------------------GVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
                                      G+  DD+ +  ++SAC++ G    G++     +
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYIL 316

Query: 240 KNDFGIIPKIEHYGC------MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           KN+        H  C      ++ + C++ +V EA +    MP+  N I W  ++S    
Sbjct: 317 KNEL----NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVN 371

Query: 294 RGELKLAESITKRL 307
            G ++ A+S  + +
Sbjct: 372 AGRMEEAKSFFEEM 385



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 145/383 (37%), Gaps = 100/383 (26%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N++     L +       +L ++VH  ++   F    H  N L+ MY      +   R++
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK-SSNVVYARQL 70

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+E+                                     PD I   T+++A   LG L
Sbjct: 71  FEEIPN-----------------------------------PDAIARTTLITAYCALGNL 95

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI----VSWTSV 184
           E+G+  E F    +  R     NA+I  +A  GD   AL+LFR+M          ++TSV
Sbjct: 96  ELGR--EIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 185 IAGLA-----------MH------GRGLEAVALFEEML--------EAGVP--------- 210
           ++ L            MH      G G  + ++   +L        E G+P         
Sbjct: 154 LSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARK 213

Query: 211 -------PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-----IIPKIEHYGCMVD- 257
                   D++ +  +++       ++  RE F++M  + G     +I    H GC  + 
Sbjct: 214 LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEA 273

Query: 258 -MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
             LCR  R          + I+ + I + T+ISAC   G  ++ + +   ++ NE ++ +
Sbjct: 274 LTLCRKMRF---------LGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNE-LNPN 323

Query: 317 NYVLLSHIYAKLLRWEKKTKIRE 339
           +   LS   A +  + K  K+ E
Sbjct: 324 HSFCLSVSNALITLYCKNNKVDE 346


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +LKA        +G+ +H   +K+ + DD++V + L+ MY  C G
Sbjct: 156 MLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC-G 214

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD++  ++ VSW+A+I G+AR G     + +F +MQ +G      T  +V S
Sbjct: 215 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFS 274

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +GALE GKWV + + K     S  + N ++DM+AK G +  A K+F  ++ + +V+
Sbjct: 275 AIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVT 334

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A +G G EAV  FEEM + GV  + + F+ +L+ACSH GLV +G++YFD MK
Sbjct: 335 WNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK 394

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P+I+HY  +VD+L R+G + +A  FI KMP++    +W  L+ +C      K+ 
Sbjct: 395 -EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIG 453

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W+   ++R++M   G+KK P  + +E++N 
Sbjct: 454 QFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENS 513

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +S+EIY+  +E+  +++KAGYVP T  VLL ++E++++  L  HSEK+
Sbjct: 514 VHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKI 573

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AFAL+  P G  IRI+KN+R+C DCHSA ++ISK++ REIVVRD +RFHHF
Sbjct: 574 ALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHF 626



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 13/288 (4%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  ++ ACA    L+  +++H  +   QF   + + N+L+H+Y  C G +   R+VFD M
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKC-GAVADARRVFDGM 125

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
             RD  SW+++I GYA+  +  +A+ L   M      P+  T  ++L A     +  +G+
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + +   K   +  V + +AL+DM+A+CG +D A+ +F  +  +  VSW ++IAG A  G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
            G   + +F EM   G       +  + SA +  G +++G+     M      I   E  
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHM------IKSGERL 299

Query: 253 GCMV-----DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              V     DM  +SG + +A +   ++  + + + W ++++A    G
Sbjct: 300 SAFVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/476 (41%), Positives = 293/476 (61%), Gaps = 7/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G   N F+   +LK C     L+  + +H  V+      D  +  +L+  Y  C  
Sbjct: 402 MRTLGRRGNAFSLAILLKPCR---TLSHARQLHANVVIEGHLRDSLLATSLMRSYAICGV 458

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI--SGVCPDEITMVTV 118
           G +  RKVFDEM  +D+V+W+ +I  YAR   + D + LF +M+   S V PDE+T + +
Sbjct: 459 G-DCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILL 517

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L ACT LGAL+ G+ +  +  +      + + N++I M+ +CG V+KA ++F     +++
Sbjct: 518 LQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSV 577

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W+++I GLA +G G +A++ FEEM  +GV PD   F G+LSACSH GLVD+G  +FD 
Sbjct: 578 VTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDM 637

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-MPIEANPIIWRTLISACCARGEL 297
           M+ ++ ++P + HYGC+VD++ R+G + EA+E + K M +  +  IWRTL+ AC   G +
Sbjct: 638 MRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHV 697

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
            L E +   LI  +     +YVLL + YA    WEK  ++R++M +  ++  PG T +EL
Sbjct: 698 DLGEKVISHLIELKAQQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVEL 757

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
           + E++EF+  D SH +  EIY  LDE+ R ++ AGYVP  S  L D++ E KE AL  HS
Sbjct: 758 NGELHEFIADDASHPRKAEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEGKECALTYHS 817

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           EKLAIAFALL  P   PIR+ KNLRVC DCH+ TK  S +YNR ++VRDR RFHHF
Sbjct: 818 EKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHF 873


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 291/475 (61%), Gaps = 11/475 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN  TY  +LKACA I D + G+ VH  V+K        V N LV MY    G
Sbjct: 350 MLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAE-SG 408

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R+VF+++ ER  +S     G  A L      +D    M IS       T  +++S
Sbjct: 409 CMEEARRVFNQLYERSMIS-CITEGRDAPLDHRIGRMD----MGISSS-----TFASLIS 458

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   +G L  G+ + +   K        + N+L+ M+++CG ++ A + F  +  R ++S
Sbjct: 459 AAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVIS 518

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WTS+I+GLA HG    A++LF +M+  GV P+DV ++ +LSACSH GLV +G+EYF SM+
Sbjct: 519 WTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQ 578

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D G+IP++EHY CMVD+L RSG VKEA EFI +MP++A+ ++W+TL+ AC +   +++ 
Sbjct: 579 RDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVG 638

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K +I  EP   + YVLLS++YA    W++  +IR  M    + K  G + +E++N 
Sbjct: 639 EIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENT 698

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            +EF  GD SH ++++IY  LD +  ++K  GYVP TS VL D+++E KE  L +HSEK+
Sbjct: 699 THEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKI 758

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+ T    PIRI KNLRVC DCHSA K++SK   REI++RD +RFH  KD
Sbjct: 759 AVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKD 813



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY 55
           MLE G+ PN +T   V  AC       +    +   VH   L   +G DI V + L+ M 
Sbjct: 142 MLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDML 198

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
               G +   RKVFD + E+  V W+ +I  Y +   + +A+++F      G  PD  TM
Sbjct: 199 AR-NGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTM 257

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---DVDKALKLFRS 172
            +++SACT+LG++ +G  + S   +        +   L+DM+AK      +D A K+F  
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFER 317

Query: 173 MNGRTIVSWTSVIAGLAMHG-RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
           M    ++SWT++I+G    G +  + + LF EML   + P+ + +  +L AC++    D 
Sbjct: 318 MRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDS 377

Query: 232 GRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           GR+ +   +K++      + +   +V M   SG ++EA     ++
Sbjct: 378 GRQVHAHVIKSNQAAAHTVGN--ALVSMYAESGCMEEARRVFNQL 420



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 24  GDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-RDSVSWS 81
           GDL LG+++H  +L+    D D  V N+L+ +Y  C G +   R VFD M   RD VSW+
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRC-GAVASARNVFDGMRGLRDIVSWT 120

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC--TDLGALEVGKWVESFIE 139
           AM    AR G   +++ L  +M  SG+ P+  T+  V  AC   +L  L  G  +    +
Sbjct: 121 AMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHK 180

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
             +    + + +ALIDM A+ GD+  A K+F  +  +T+V WT +I+         EAV 
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           +F + LE G  PD      ++SAC+  G V  G +   S+    G          +VDM 
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFASDACVSCGLVDMY 299

Query: 260 CRSGRVKEAHEFIQKM--PIEANPII-WRTLISACCARG 295
            +S  +++A ++  K+   +  N +I W  LIS     G
Sbjct: 300 AKSN-IEQAMDYANKVFERMRKNDVISWTALISGYVQSG 337


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/487 (39%), Positives = 286/487 (58%), Gaps = 31/487 (6%)

Query: 19  ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----------------- 61
           AC+ IG L  G+ VH   +K     + +V N L+ MYG C                    
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 62  -------------IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
                        +E  R +FD M  RD VSW+ +I  YA+     +A++ F+ M     
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P+   +  +LS C  LG+ ++G+ + +   K  ++  + + NAL+ M+ KCG  D + K
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHK 605

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F SM  R I +W + I G A HG G EA+ ++E M   GV P++V FVGLL+ACSH GL
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G ++F SM  D+G+ P +EHY CMVD+L R+G V+ A +FI  MPIE + +IW  L+
Sbjct: 666 VDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            AC      ++     ++L   EP +  NYV+LS+IY+ L  W +  ++R++M +RG+ K
Sbjct: 726 GACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSK 785

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
            PG + +++ N+++ FV GDK H + +EI   L ++   ++  GYVP T  VL DI+EE 
Sbjct: 786 EPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQ 845

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           KE +L  HSEKLA+A+ LL TP G PI+I+KNLR+C DCH+  KF+S +  R+I +RD +
Sbjct: 846 KESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGN 905

Query: 469 RFHHFKD 475
           RFHHF++
Sbjct: 906 RFHHFRN 912



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 144/324 (44%), Gaps = 39/324 (12%)

Query: 4   YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ-NTLVHMYGSCEGGI 62
           YG  P K + P       G+     G+     +L  Q  D I V  N ++  Y    G +
Sbjct: 313 YGRDPVK-SIPSQTALLTGLA--RCGRITEARILFEQIPDPIVVSWNAMITGYMQ-NGMV 368

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +  +++FD M  R+++SW+ MI GYA+ G S +A+DL + +  +G+ P   ++ +   AC
Sbjct: 369 DEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLAC 428

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-------------------- 162
           + +GALE G+ V S   K     +  +CNALI M+ KC +                    
Sbjct: 429 SHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWN 488

Query: 163 -----------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
                      ++ A  +F +M  R +VSWT++I+  A   RG EAV  F+ ML     P
Sbjct: 489 SFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKP 548

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           +      LLS C   G    G++   ++    G+  ++     ++ M  + G   ++H+ 
Sbjct: 549 NSPILTILLSVCGGLGSAKLGQQ-IHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKV 606

Query: 272 IQKMPIEANPIIWRTLISACCARG 295
              M  E +   W T I+ C   G
Sbjct: 607 FDSME-ERDIFTWNTFITGCAQHG 629



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 162/340 (47%), Gaps = 19/340 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G SP++  +  VL A  G+ DL + + +   VLK  F  D+ +  +++++Y      +++
Sbjct: 218 GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K FD M ER+  +WS MI   +  G    AI ++ +  +  + P +  ++T L+ C  
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC-- 334

Query: 125 LGALEVGKWVES-FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
                 G+  E+  + +Q+ +  V   NA+I  + + G VD+A +LF  M  R  +SW  
Sbjct: 335 ------GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAG 388

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +IAG A +GR  EA+ L + +   G+ P   +      ACSH G ++ GR+   S+    
Sbjct: 389 MIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQ-VHSLAVKA 447

Query: 244 GIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           G   +   Y C  ++ M  +   ++   +   +M ++ + + W + I+A      L+ A 
Sbjct: 448 GC--QFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAALVQNNMLEDAR 504

Query: 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
            I   ++  + +   ++  +   YA+  R ++  +  + M
Sbjct: 505 HIFDNMLSRDVV---SWTTIISAYAQAERGDEAVEFFKTM 541



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 22/291 (7%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           GD+ + + +  A+       D+   N++V  Y      ++    +F +M +R+ V+W+ M
Sbjct: 140 GDITMARRLFDAMPS----RDVTSWNSMVTGYCHSRQMVD-AWNLFKQMPQRNLVTWTVM 194

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT---DLGALEVGKWVESFIEK 140
           I GY R+       D+FR M   G  PD+    +VLSA T   DLG LEV   +   + K
Sbjct: 195 ISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEV---LRPLVLK 251

Query: 141 QMVNRSVGLCNALIDMFAK-CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
                 V +  ++++++ +    +D A+K F  M  R   +W+++IA L+  GR   A+A
Sbjct: 252 TGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIA 311

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           ++       +P        LL+  + CG + + R  F+ + +     P +  +  M+   
Sbjct: 312 VYGRDPVKSIPSQ----TALLTGLARCGRITEARILFEQIPD-----PIVVSWNAMITGY 362

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
            ++G V EA E   +MP   N I W  +I+     G  + A  + + L  N
Sbjct: 363 MQNGMVDEAKELFDRMPFR-NTISWAGMIAGYAQNGRSEEALDLLQALHRN 412



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 14/198 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN      +L  C G+G   LG+ +H   +K     ++ V N L+ MY  C  
Sbjct: 541 MLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKC-- 598

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           G     KVFD M ERD  +W+  I G A+ GL  +AI ++  M+  GV P+E+T V +L+
Sbjct: 599 GCADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLN 658

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL------IDMFAKCGDVDKALKLFRSMN 174
           AC+  G ++ G W   F +   ++R  GL   L      +D+  + GDV  A K    M 
Sbjct: 659 ACSHAGLVDEG-W--QFFKS--MSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMP 713

Query: 175 GRT-IVSWTSVIAGLAMH 191
                V W++++    +H
Sbjct: 714 IEPDTVIWSALLGACKIH 731



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 52/284 (18%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R+VFD M  RD ++W++MI  Y   G+  DA  LF    ISG   +  T   +L
Sbjct: 47  GRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDA--ISG--GNVRTATILL 102

Query: 120 SACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           S    LG  L+  +  +   E+  V       NA++  + + GD+  A +LF +M  R +
Sbjct: 103 SGYARLGRVLDARRVFDGMPERNTV-----AWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 179 VSWTSVIAG----------------------------------LAMHGRGLEAVALFEEM 204
            SW S++ G                                  +  HG+G +   +F  M
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWD---IFRMM 214

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
              G  PD   F  +LSA +  GL D G  E    +    G    +     ++++  R  
Sbjct: 215 HHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 264 RVKE-AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
              + A +F   M +E N   W T+I+A    G +  A ++  R
Sbjct: 273 SALDIAIKFFDGM-VERNEYTWSTMIAALSHGGRIDAAIAVYGR 315



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 16/186 (8%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +A I   A+ G + +A ++F +M  R I++W S+I+     G   +A  LF+ +    V 
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
              +    LLS  +  G V   R  FD M     +      +  MV    ++G +  A  
Sbjct: 97  TATI----LLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSCYVQNGDITMARR 147

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
               MP   +   W ++++  C   ++  A ++ K+      M + N V  + + +  +R
Sbjct: 148 LFDAMP-SRDVTSWNSMVTGYCHSRQMVDAWNLFKQ------MPQRNLVTWTVMISGYVR 200

Query: 331 WEKKTK 336
            E+  K
Sbjct: 201 IEQHGK 206


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/474 (40%), Positives = 294/474 (62%), Gaps = 3/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +L +C G      G+ +H   +K  +   + V ++L+ MY    G
Sbjct: 182 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAK-SG 240

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I     VF  + ERD V+ +A+I GYA++GL  +A+ LFRQ+QI G+  + +T  +VL+
Sbjct: 241 RICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLT 300

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L AL  GK V S + +      V L N+LIDM++KCG+V  A ++F SM  RT +S
Sbjct: 301 ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 360

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W +++ G + HG   E + LF+ M E   V PD + ++ +LS CSH  L D G E F +M
Sbjct: 361 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNM 420

Query: 240 KN-DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            N   GI P I HYGC+VD+L R+GRV+EA +FI+KMP      IW +L+ +C    +++
Sbjct: 421 VNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVE 480

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           +   + ++L+  EP +  NYV+LS++YA   +WE    IR++M ++ + K PG + +ELD
Sbjct: 481 IGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELD 540

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++ F   D +H + +E+ + + E+  K K+ GYVP  S VL D++EE KE  L  HSE
Sbjct: 541 QIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSE 600

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           KLA+AF L+ TP GT IR++KNLR+C DCHS  KF+S++Y R +++RD++RFH+
Sbjct: 601 KLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHN 654



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 140/276 (50%), Gaps = 3/276 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L  C     +  G+ VH  ++K  +   ++++  L+ +Y  C+  +   R++FDEM
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC-LGDAREMFDEM 151

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            +++ VSW+AMI  Y++ G + +A++LF +M  S   P+  T  T+L++C      E G+
Sbjct: 152 PQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR 211

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S   K+     + + ++L+DM+AK G +  A  +F  +  R +V+ T++I+G A  G
Sbjct: 212 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 271

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
              EA+ LF ++   G+  + V +  +L+A S    ++ G++    +    G    +   
Sbjct: 272 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS-GQYSYVVLL 330

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             ++DM  + G V  A      MP E   I W  ++
Sbjct: 331 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 365


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/504 (39%), Positives = 298/504 (59%), Gaps = 33/504 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCE-- 59
            + P+KFT   VL ACA    L LGK +H  +++        V N L+ MY   G+ E  
Sbjct: 273 SLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVA 332

Query: 60  ---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92
                                      G I+  R +FD +  RD V+W+AMI GYA+ GL
Sbjct: 333 HRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
            +DA+ LFR M   G  P+  T+  VLS  + L +L+ GK + +   +     SV + NA
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNA 452

Query: 153 LIDMFAKCGDVDKALKLFRSM-NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           LI M+++ G +  A K+F  + + R  ++WTS+I  LA HG G EA+ LFE+ML   + P
Sbjct: 453 LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKP 512

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           D + +VG+LSAC+H GLV++G+ YF+ MKN   I P   HY CM+D+L R+G ++EA+ F
Sbjct: 513 DHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNF 572

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I+ MPIE + + W +L+S+C     + LA+   ++L+  +P +   Y+ L++  +   +W
Sbjct: 573 IRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKW 632

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
           E   K+R+ M  + +KK  G + +++ N+++ F   D  H Q   IY M+ ++ +++KK 
Sbjct: 633 EDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKM 692

Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
           G++P T+ VL D+ +E KE  L  HSEKLAIAFAL+ TP  T +RI+KNLRVCNDCHSA 
Sbjct: 693 GFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAI 752

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           ++IS +  REI+VRD  RFHHFKD
Sbjct: 753 RYISLLVEREIIVRDATRFHHFKD 776



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 164/359 (45%), Gaps = 65/359 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+SP +FT+  VL +CA    L++GK VH  V+K      + V N+L++MY  C  
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 61  GI------------------------------ELGRKVFDEMSERDSVSWSAMIGGYARL 90
            +                              +L   +FD+M++ D VSW+++I GY   
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 91  GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G    A++ F  M + S + PD+ T+ +VLSAC +  +L++GK + + I +  V+ +  +
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV 315

Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
            NALI M+AK                                  GD+D A  +F S+  R
Sbjct: 316 GNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR 375

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +V+WT++I G A +G   +A+ LF  M+  G  P++     +LS  S    +D G++  
Sbjct: 376 DVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ-L 434

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            ++      +  +     ++ M  RSG +K+A +    +    + + W ++I +    G
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 37/293 (12%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           NT++  +    G ++  R+VFDE+ + DSVSW+ MI GY  LGL   A+  F +M  SG+
Sbjct: 83  NTILSAHAKA-GNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI 141

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD------ 162
            P + T   VL++C    AL+VGK V SF+ K   +  V + N+L++M+AKCGD      
Sbjct: 142 SPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKV 201

Query: 163 -------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
                                     D AL LF  M    IVSW S+I G    G  + A
Sbjct: 202 VFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRA 261

Query: 198 VALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCM 255
           +  F  ML+ + + PD      +LSAC++   +  G++ +   ++ D  I   + +   +
Sbjct: 262 LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN--AL 319

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRL 307
           + M  +SG V+ AH  ++     + N I + +L+      G++  A +I   L
Sbjct: 320 ISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSL 372



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
           V L N L++++ K G    A +LF  M  +T  SW ++++  A  G    A  +F+E+ +
Sbjct: 48  VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ 107

Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV- 265
               PD V++  ++   +H GL       F  M +  GI P  +     V   C + +  
Sbjct: 108 ----PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS-GISPT-QFTFTNVLASCAAAQAL 161

Query: 266 ---KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
              K+ H F+ K+       +  +L++     G+  +A+ +  R+
Sbjct: 162 DVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRM 206


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 300/473 (63%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIE 63
           G  P+  T   +    A   D    +SVHG +++  +  +D+ + N +V MY    G ++
Sbjct: 412 GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKL-GLLD 470

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSAC 122
              KVF+ +  +D +SW+ +I GYA+ GL+++AI++++ M+    + P++ T V++L A 
Sbjct: 471 SAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 530

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +GAL+ G  +   + K  ++  V +   LID++ KCG +  A+ LF  +   + V+W 
Sbjct: 531 AHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 590

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+   +HG   + + LF EML+ GV PD V FV LLSACSH G V++G+  F  M+ +
Sbjct: 591 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-E 649

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+L R+G ++ A+ FI+ MP++ +  IW  L+ AC   G ++L + 
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            + RL   +  +   YVLLS+IYA + +WE   K+R +  +RG+KK PG + IE++ ++ 
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G++SH + KEIYE L  +  KMK  GY+P  S VL D+ E++KE  L  HSE+LAI
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ TPP +PIRI KNLRVC DCH+ATKFIS+I  REIVVRD +RFHHFKD
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKD 882



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 146/290 (50%), Gaps = 5/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ +T+P VLKAC  + D   G+ +H    K  F  ++ V  +L+HMY S  G   + 
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMY-SRFGFTGIA 269

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD+M  RD  SW+AMI G  + G +  A+D+  +M++ G+  + +T+V++L  C  L
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQL 329

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G +     +  ++ K  +   + + NALI+M+AK G+++ A K F+ M    +VSW S+I
Sbjct: 330 GDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSII 389

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           A    +   + A   F +M   G  PD +  V L S  +        R     +     +
Sbjct: 390 AAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWL 449

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +  +     +VDM  + G +  AH+  + + ++ + I W TLI+     G
Sbjct: 450 MEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK-DVISWNTLITGYAQNG 498



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 164/323 (50%), Gaps = 9/323 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   +L  C  +GD++    +H  V+K     D+ V N L++MY    G +E 
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF-GNLED 369

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RK F +M   D VSW+++I  Y +      A   F +MQ++G  PD +T+V++ S    
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 125 LGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
               +  + V  FI ++  +   V + NA++DM+AK G +D A K+F  +  + ++SW +
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKN 241
           +I G A +G   EA+ +++ M E   + P+   +V +L A +H G + +G R +   +K 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           +  +   +    C++D+  + GR+ +A     ++P E++ + W  +IS     G  +   
Sbjct: 550 NLHL--DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGHAEKTL 606

Query: 302 SITKRLI--GNEPMHESNYVLLS 322
            +   ++  G +P H +   LLS
Sbjct: 607 KLFGEMLDEGVKPDHVTFVSLLS 629



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 43  DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
             I +   LV++Y +  G + L R  FD++ ++D  +W++MI  Y   G   +AI  F Q
Sbjct: 149 QSIFISTRLVNLYANL-GDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQ 207

Query: 103 -MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
            + +S + PD  T   VL AC   G L  G+ +  +  K     +V +  +LI M+++ G
Sbjct: 208 LLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFG 264

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
               A  LF  M  R + SW ++I+GL  +G   +A+ + +EM   G+  + V  V +L 
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 222 ACSHCGLVDKG---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
            C   G +        Y      +F +         +++M  + G +++A +  Q+M I 
Sbjct: 325 VCPQLGDISTAMLIHLYVIKHGLEFDLFVS----NALINMYAKFGNLEDARKAFQQMFI- 379

Query: 279 ANPIIWRTLISA 290
            + + W ++I+A
Sbjct: 380 TDVVSWNSIIAA 391


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/470 (38%), Positives = 299/470 (63%), Gaps = 3/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  +      +L+AC+G+  + L K +H   ++    D + V+N ++ +YG C G +  
Sbjct: 462 GIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLV-VKNRIIDIYGEC-GEVYH 519

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K+F+ + ++D V+W++MI  YA  GL  +A+ LF +MQ + V PD + +V++L A   
Sbjct: 520 SLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGG 579

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L  GK V  F+ ++  +    + ++L+DM++ CG +  ALK+F ++  + +V WT++
Sbjct: 580 LSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAM 639

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I    MHG G +A+ LF+ ML+ GV PD V+F+ LL ACSH  LV++G+ Y D M + + 
Sbjct: 640 INATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYR 699

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P  EHY C+VD+L RSG+ +EA+EFI+ MP++   ++W +L+ AC      +LA    
Sbjct: 700 LEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAA 759

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            RL+  EP +  NYVL+S+++A++ +W    ++R  + +RG++K P  + IE+ N ++ F
Sbjct: 760 NRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTF 819

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKK-AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
              D SH  ++ I   L E+  +++K  GY   T  VL D++EE+K D L++HSE+LAI+
Sbjct: 820 TTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAIS 879

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           F L+ T PG P+RI KNLRVC DCH  TK +SK+++R+IVVRD +RFHHF
Sbjct: 880 FGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHF 929



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 150/287 (52%), Gaps = 7/287 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+P+  T   VLKA    GD   G  VHG  +K        V N L+ MY  C G ++ 
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKC-GILDS 217

Query: 65  GRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             +VF+ M + RD  SW++MI G  + G+   A+DLFR MQ + +  +  T V VL  CT
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCT 277

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L  L +G+ + + + K     ++  CNAL+ M+ KCG VD AL++FR ++ +  +SW S
Sbjct: 278 ELAQLNLGRELHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNS 336

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKND 242
           +++    +G   EA+    EML  G  PD    V L SA  H G +  G+E +  ++K  
Sbjct: 337 MLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQR 396

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
                ++ +   ++DM  +   ++ +     +M I+ + I W T+I+
Sbjct: 397 LDSDTQVGN--TLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTIIT 440



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 10/325 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G  P+      +  A   +G L  GK VH   +K +   D  V NTL+ MY  C  
Sbjct: 357 MLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRY 416

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE    VFD M  +D +SW+ +I  YA+     +A+++FR+ Q  G+  D + + ++L 
Sbjct: 417 -IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILE 475

Query: 121 ACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ L  + + K +  + I   +++  V   N +ID++ +CG+V  +LK+F ++  + IV
Sbjct: 476 ACSGLETILLAKQLHCYAIRNGLLDLVVK--NRIIDIYGECGEVYHSLKMFETVEQKDIV 533

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WTS+I   A  G   EA+ LF EM    V PD VA V +L A      + KG+E    +
Sbjct: 534 TWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFL 593

Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            + +F +   I     +VDM    G +  A +    +  + + ++W  +I+A    G  K
Sbjct: 594 IRRNFHMEEAI--VSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGK 650

Query: 299 LAESITKRLI--GNEPMHESNYVLL 321
            A  + KR++  G  P H S   LL
Sbjct: 651 QAIDLFKRMLQTGVTPDHVSFLALL 675



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQF-GDDIHVQNTLVHMYGSCEGGI 62
           G SP +  Y +VL   A    +  G  VH  AV      GDD  +   L+ MYG C G +
Sbjct: 53  GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKC-GRV 111

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GVCPDEITMVTVL 119
              R +FD MS R   SW+A+IG Y   G + +A+ ++R M++S   GV PD  T+ +VL
Sbjct: 112 ADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVL 171

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTI 178
            A    G    G  V     K  ++RS  + NALI M+AKCG +D A+++F  M +GR +
Sbjct: 172 KASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDV 231

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            SW S+I+G   +G  L+A+ LF  M  A +  +    VG+L  C+    ++ GRE   +
Sbjct: 232 ASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAA 291

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +    G    I+    +V M  + GRV  A    +++  E + I W +++S     G   
Sbjct: 292 LLKS-GSEVNIQCNALLV-MYTKCGRVDSALRVFREID-EKDYISWNSMLSCYVQNGLYA 348

Query: 299 LA-ESITKRLIGN-EPMH 314
            A E I++ L G  +P H
Sbjct: 349 EAIEFISEMLRGGFQPDH 366



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ-NTLVHMYGSCEGGIEL 64
           +S N +T   VL+ C  +  LNLG+ +H A+LK   G ++++Q N L+ MY  C G ++ 
Sbjct: 262 LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS--GSEVNIQCNALLVMYTKC-GRVDS 318

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF E+ E+D +SW++M+  Y + GL  +AI+   +M   G  PD   +V++ SA   
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGH 378

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LG L  GK V ++  KQ ++    + N L+DM+ KC  ++ +  +F  M  +  +SWT++
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTI 438

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           I   A   R +EA+ +F E  + G+  D +    +L ACS
Sbjct: 439 ITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 285/461 (61%), Gaps = 3/461 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L+ C+    L  GK +HG  ++  F  ++ +   +V +Y  C G ++    VF+ M +R
Sbjct: 338 LLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKC-GSLKQATFVFNRMKDR 395

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + ++W+AM+ G A+ G + DA+ LF QMQ  G+  + +T V+++ +C  LG+L+ G+ + 
Sbjct: 396 NVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIH 455

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRG 194
             + +      +    AL+DM+AKCG ++ A ++F   +  + +V W S+I G  MHG G
Sbjct: 456 GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHG 515

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            +AV ++ +M+E G+ P+   F+ LLSACSH  LV++G   F+SM+ D  I P  +HY C
Sbjct: 516 YQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYAC 575

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
           +VD+L R+GR +EA   I+KMP +    +   L+S C     + L    + +L+  + M+
Sbjct: 576 LVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN 635

Query: 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQS 374
              Y++LS+IYA+  RW+K   IR +M  RG+KK PG +L+E  N ++ F  GD SH   
Sbjct: 636 PGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNW 695

Query: 375 KEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP 434
           +EIY  L+ +   ++ +GYVP TS VL D++EE K   L  HSE+LAIAF LL TP G+ 
Sbjct: 696 EEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSL 755

Query: 435 IRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           IRI KNLRVC DCH+ TK+ISKI  REI+VRD +RFHHF +
Sbjct: 756 IRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSN 796



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 170/320 (53%), Gaps = 5/320 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  T   +++AC GIG+L LGK +HG VL    G+DI V  + V MY S  G IE 
Sbjct: 226 GIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMY-SKMGDIES 284

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF +M  R+ VSW+AMI G  R GL  ++ DLF ++  S    D  T+V++L  C+ 
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
             +L  GK +     +   +  + L  A++D+++KCG + +A  +F  M  R +++WT++
Sbjct: 345 TASLATGKILHGCAIRSFESNLI-LSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAM 403

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + GLA +G   +A+ LF +M E G+  + V FV L+ +C+H G + +GR     +    G
Sbjct: 404 LVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LG 462

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               I +   +VDM  + G++  A        I  + ++W ++I+     G    A  I 
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522

Query: 305 KRLI--GNEPMHESNYVLLS 322
            ++I  G +P   +   LLS
Sbjct: 523 HKMIEEGLKPNQTTFLSLLS 542



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 149/331 (45%), Gaps = 43/331 (12%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           F LKACA   D  +G  +  + ++     +  V ++++       G I   ++VFD M  
Sbjct: 135 FALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKF-GKIGEAQRVFDGMPN 193

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           +D V W+++IGGY + G    A  LF +M  SG+ P  ITM +++ AC  +G L++GK +
Sbjct: 194 KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCM 253

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
             ++    +   + +  + +DM++K GD++ A  +F  M  R +VSW ++I+G   +G  
Sbjct: 254 HGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLV 313

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSH----------------------------- 225
            E+  LF  ++ +    D    V LL  CS                              
Sbjct: 314 GESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIV 373

Query: 226 -----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---I 277
                CG + +    F+ MK D  +I     +  M+  L ++G  ++A     +M    I
Sbjct: 374 DLYSKCGSLKQATFVFNRMK-DRNVIT----WTAMLVGLAQNGHAEDALRLFAQMQEEGI 428

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLI 308
            AN + + +L+ +C   G LK   SI   L 
Sbjct: 429 AANSVTFVSLVHSCAHLGSLKRGRSIHGHLF 459



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 7/281 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           KS H  ++      D  V   LV  Y      +E  R VFD+  +   +  +AM+ GY +
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRS-LEAARYVFDQFFQPKGLLCNAMLCGYLQ 107

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQM-VNRSV 147
            G   + ++LF  M+   +  D  +    L AC      E+G + + S +EK M  NR V
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           G  +++I    K G + +A ++F  M  + +V W S+I G    G    A  LF EM  +
Sbjct: 168 G--SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGS 225

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P  +    L+ AC   G +  G+     +    G+   I      VDM  + G ++ 
Sbjct: 226 GIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLG-LGLGNDILVLTSFVDMYSKMGDIES 284

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           A     KMP   N + W  +IS C   G +  +  +  RL+
Sbjct: 285 ARWVFYKMPTR-NLVSWNAMISGCVRNGLVGESFDLFHRLV 324



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 3/175 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G++ N  T+  ++ +CA +G L  G+S+HG + +  F  DI     LV MY  C G
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKC-G 481

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I L  ++F   S  +D V W++MI GY   G    A+ ++ +M   G+ P++ T +++L
Sbjct: 482 KINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLL 541

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNA-LIDMFAKCGDVDKALKLFRSM 173
           SAC+    +E G  + + +E+    R +    A L+D+ ++ G  ++A  L   M
Sbjct: 542 SACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM 596


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/474 (40%), Positives = 293/474 (61%), Gaps = 3/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML     PN FT+  +L +C G      G+ +H   +K  +   + V ++L+ MY    G
Sbjct: 154 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAK-SG 212

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I     VF  + ERD V+ +A+I GYA++GL  +A+ LFRQ+QI G+  + +T  +VL+
Sbjct: 213 RICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLT 272

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L AL  GK V S + +      V L N+LIDM++KCG+V  A ++F SM  RT +S
Sbjct: 273 ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 332

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           W +++ G + HG   E + LF+ M E   V PD + ++ +LS CSH  L D G E F +M
Sbjct: 333 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNM 392

Query: 240 KN-DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            N   GI P I HYGC+VD+L R+GRV+EA +FI+KMP      IW +L+ +C    +++
Sbjct: 393 VNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVE 452

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           +   + ++L+  EP +  NYV+LS++YA   +WE    IR++M ++ + K PG + +ELD
Sbjct: 453 IGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELD 512

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             ++ F   D +H + +E+   + E+  K K+ GYVP  S VL D++EE KE  L  HSE
Sbjct: 513 QIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSE 572

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           KLA+AF L+ TP GT IR++KNLR+C DCHS  KF+S++Y R +++RD++RFH+
Sbjct: 573 KLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHN 626



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 3/276 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L  C     +  G+ VH  ++K  +   ++++  L+ +Y  C+  +   R +FDEM
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC-LGDARGMFDEM 123

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            +R+ VSW+AMI  Y++ G + +A++LF +M  S   P+  T  T+L++C      E G+
Sbjct: 124 PQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGR 183

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + S   K+     + + ++L+DM+AK G +  A  +F  +  R +V+ T++I+G A  G
Sbjct: 184 QIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 243

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
              EA+ LF ++   G+  + V +  +L+A S    ++ G++    +    G    +   
Sbjct: 244 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS-GQYSYVVLL 302

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             ++DM  + G V  A      MP E   I W  ++
Sbjct: 303 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 337


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/488 (40%), Positives = 291/488 (59%), Gaps = 33/488 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN  TY  +LKACA + D + G+ +H  VLK        V N LV MY    G
Sbjct: 342 MLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAE-SG 400

Query: 61  GIELGRKVFDEM-------------SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
            +E  RK FD++             +ER++ S S+ I G        D +  F       
Sbjct: 401 CMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGM------DDGVSTF------- 447

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
                 T  ++LSA   +G L  G+ + +   K       G+ N+L+ M+A+CG ++ A 
Sbjct: 448 ------TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDAC 501

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           + F  M    ++SWTS+I+GLA HG   +A+++F +M+ AGV P+DV ++ +LSACSH G
Sbjct: 502 RAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVG 561

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           LV +G+E+F SM+ D G++P++EHY C+VD+L RSG V+EA +FI +MP +A+ ++W+TL
Sbjct: 562 LVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTL 621

Query: 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +SAC   G  ++ E     +I  EP   + YVLLS++YA    W++  +IR +M  + + 
Sbjct: 622 LSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLS 681

Query: 348 KIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE 407
           K  G + +++ N I+EF  GD SH  + +IY  L  + R++K  GYVP TS VL D++EE
Sbjct: 682 KETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEE 741

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
            KE  L +HSEK+A+AF L+ T    P+RI KNLRVC DCHSA K+ISK   REI++RD 
Sbjct: 742 LKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDS 801

Query: 468 HRFHHFKD 475
           +RFH  KD
Sbjct: 802 NRFHRMKD 809



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 145/276 (52%), Gaps = 12/276 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNL-GKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELG 65
           PN FT     +AC       L G  V G VLK  F G D+ V   L+ M+    G +   
Sbjct: 141 PNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFAR-NGDLVAA 199

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++VFD + ER SV W+ +I  Y + G ++  ++LF  M   G  PD  +M +++SACT+L
Sbjct: 200 QRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTEL 259

Query: 126 GALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCG---DVDKALKLFRSMNGRTIVSW 181
           G++ +G+ + S  +   +V+ S   C  L+DM+AK      ++ A K+F++M    ++SW
Sbjct: 260 GSVRLGQQLHSVALRLGLVSDSCVSC-GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSW 318

Query: 182 TSVIAGLAMHG-RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           T++I+G    G +    +ALF EML   + P+ + +  LL AC++    D GR+ +   +
Sbjct: 319 TALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVL 378

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           K     +  + +   +V M   SG ++EA +   ++
Sbjct: 379 KTSIAHVNVVGN--ALVSMYAESGCMEEARKAFDQL 412



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 164/352 (46%), Gaps = 15/352 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML+ G  P+ ++   ++ AC  +G + LG+ +H   L+     D  V   LV MY     
Sbjct: 237 MLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKM 296

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVT 117
           E  +E  RKVF  M   + +SW+A+I GY + G+   + + LFR+M    + P+ IT   
Sbjct: 297 ERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSN 356

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L AC +L   + G+ + + + K  +     + NAL+ M+A+ G +++A K F  +    
Sbjct: 357 LLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETN 416

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           I+S +  +       R   + +   E ++ GV      F  LLSA +  GL+ KG++   
Sbjct: 417 ILSMSPDVET----ERNNASCSSKIEGMDDGVST--FTFASLLSAAASVGLLTKGQKLHA 470

Query: 238 -SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            SMK  F     I +   +V M  R G +++A     +M  + N I W ++IS     G 
Sbjct: 471 LSMKAGFRSDQGISN--SLVSMYARCGYLEDACRAFDEMK-DHNVISWTSIISGLAKHGY 527

Query: 297 LKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
            K A S+   +I  G +P   +   +LS      L  E K   R +    G+
Sbjct: 528 AKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGL 579



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 10/287 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEM-S 73
           +L + A  GDL LG+++H  +L+ +  D D  V N+L+ MY  C G +E  R+VFD+M  
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKC-GAVEAARRVFDQMCG 104

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC--TDLGALEVG 131
            RD VSW+AM    AR G   +++ L  +M   G+ P+  T+     AC   +L  L  G
Sbjct: 105 VRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGG 164

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             +   ++       V +  ALIDMFA+ GD+  A ++F  +  RT V WT +I      
Sbjct: 165 VVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQA 224

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G   + V LF  ML+ G  PD  +   ++SAC+  G V  G++   S+    G++     
Sbjct: 225 GCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ-LHSVALRLGLVSDSCV 283

Query: 252 YGCMVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +VDM  +      ++ A +  + MP   N + W  LIS     G
Sbjct: 284 SCGLVDMYAKLKMERSMEHARKVFKTMP-RHNVMSWTALISGYVQSG 329


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/421 (43%), Positives = 273/421 (64%), Gaps = 7/421 (1%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-------QISGVCPDEIT 114
           I+    VF+++    S  W+ MI G+A  G    +++L+ +M         SGV P+ ++
Sbjct: 527 IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVS 586

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           +++VL AC +LGAL  G+W  S++ +      + +  A++DM++KCG +D A  LF    
Sbjct: 587 ILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA 646

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           G+ +V W+++IA   +HG G +A+ LF++M++AGV P  V F  +LSACSH GL+++G+ 
Sbjct: 647 GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKM 706

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           YF  M  +F I  K+ +Y CMVD+L R+G++ EA + I+ MP+E +  IW +L+ AC   
Sbjct: 707 YFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 766

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
             L LAE I   L   +P+H   +VLLS+IYA   RW +  K+R++M +RG  KI G +L
Sbjct: 767 NNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSL 826

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +E DN++++F  GD+SH Q +++Y  L+E+   MK  GYVP T  VL DI EE KE AL+
Sbjct: 827 VEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALS 886

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HSE+LAIAF L+ T PGT +RI KNLR+C DCH+A K ISKI NR I+VRD HRFH F+
Sbjct: 887 YHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFE 946

Query: 475 D 475
           D
Sbjct: 947 D 947



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN+ +   VL AC  +G L  G+  H  V++  F  DI V   ++ MY  C G ++L
Sbjct: 579 GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKC-GSLDL 637

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +FDE + +D V WSAMI  Y   G    AIDLF QM  +GV P  +T   VLSAC+ 
Sbjct: 638 ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 697

Query: 125 LGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
            G LE GK + +   E+ ++ R +     ++D+  + G + +A+ L  +M      S W 
Sbjct: 698 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 757

Query: 183 SVIAGLAMH 191
           S++    +H
Sbjct: 758 SLLGACRIH 766



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 36/231 (15%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIE 63
           G +P+ FT P  LKACAG+  L LGK +HG   K  + G D+ V + LV +Y  C G + 
Sbjct: 98  GEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKC-GQMG 156

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              KVF+E    D+V W++M+ GY +     +A+ LF QM              V+  C 
Sbjct: 157 EALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQM--------------VMMDCF 202

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           D                      + L N+L++++AK G    A  LF  M  + ++SW++
Sbjct: 203 D--------------------GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           +IA  A +    EA+ LF EM+E    P+ V  V  L AC+    +++G++
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK 293



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 93/145 (64%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +E G+K+      +D VSW A++ GYA+ G++  ++ +FR M   G+ PD + +V +L+A
Sbjct: 288 LEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAA 347

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            ++LG  +    +  ++ +   N +V +  +LI++++KCG +  A+KLF+ M  R +V W
Sbjct: 348 SSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIW 407

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLE 206
           +S+IA   +HGRG EA+ +F++M++
Sbjct: 408 SSMIAAYGIHGRGGEALEIFDQMIQ 432



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 9/285 (3%)

Query: 27  NLGKSV---HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
           N G+SV   H  V K     D      L  +Y  C   ++  RKVFDE    +   W++ 
Sbjct: 15  NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKC-ASLQAARKVFDETPHPNVHLWNST 73

Query: 84  IGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ- 141
           +  Y R     + + LF  M   +G  PD  T+   L AC  L  LE+GK +  F +K  
Sbjct: 74  LRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKND 133

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
            +   + + +AL+++++KCG + +ALK+F        V WTS++ G   +    EA+ALF
Sbjct: 134 EIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 202 EEMLEAGVPPDDVAFV-GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            +M+       D+  V  LL+  +  G        F  M     +I       C  +   
Sbjct: 194 SQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK-DVISWSTMIACYANNEA 252

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            +  +   HE I+K   E N +   + + AC     L+  + I K
Sbjct: 253 ANEALNLFHEMIEKR-FEPNSVTVVSALQACAVSRNLEEGKKIHK 296



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 152/370 (41%), Gaps = 53/370 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+      +L A + +G       +HG V++  F  ++ V  +L+ +Y  C G
Sbjct: 329 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKC-G 387

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-----------QISGVC 109
            +    K+F  M  RD V WS+MI  Y   G   +A+++F QM           QIS   
Sbjct: 388 SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQIS--M 445

Query: 110 PDEITMVTVLSACT-------DLGALEVG---KWVESFIE---------KQMVNRSVGLC 150
             ++     +++CT        + A  +    +W+  F E           M   ++   
Sbjct: 446 QPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAY 505

Query: 151 NALID---------MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
               D         M+     +D A  +F  +       W  +I G A  GR L ++ L+
Sbjct: 506 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 565

Query: 202 EEMLEAGVPPDD-------VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            +M+E G+ PD+       V+ + +L AC + G + KG E+F S     G    I     
Sbjct: 566 SKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATA 624

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEP 312
           ++DM  + G +  A     +   + + + W  +I++    G  + A  +  +++  G  P
Sbjct: 625 IMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP 683

Query: 313 MHESNYVLLS 322
            H +   +LS
Sbjct: 684 SHVTFTCVLS 693


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/480 (39%), Positives = 297/480 (61%), Gaps = 7/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + GV P+K  +   L AC G + DL LGK +H  VL+     +  V   LV+MYG   
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA- 59

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV---CPDEITMV 116
           G ++   +VF  +  +D VSW+A++  Y+R  L  +A+ LFR+M + G+    PD     
Sbjct: 60  GCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFA 119

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN-ALIDMFAKCGDVDKALKLFRSMNG 175
            +L AC  L A   G+     I++   + S G+    +I+M+ KCG++  A ++F  M+ 
Sbjct: 120 FLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSE 179

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R  V+WT++I+G A HG   E++ +F  M + G  PD V+ + +LS CSH GLV++G ++
Sbjct: 180 RDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDF 239

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F  +  +FG+ P  +HYGCM+D+L RSG ++ A   I++MP +A  + W   ++AC    
Sbjct: 240 FLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHS 299

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
           + +  +   ++++  EP+  + YV LS+IYA    W++  ++R  M   G++K PG + I
Sbjct: 300 DTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E+++ ++EF  GDKSH ++ EIY +L+ + R+M+ +GYVP T  VLL+++EE KE  L  
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCF 418

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAF LL TP G+ +RI+KNLRVC DCH+A KF+S+I  REI +RD  RFHHF+D
Sbjct: 419 HSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQD 478


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 281/436 (64%), Gaps = 6/436 (1%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT+V  YG   G +   R+VF  M ER+ VSWSAM+    R G   +A+ +F +M
Sbjct: 144 DVVSWNTMVSGYGK-GGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG---LCNALIDMFAKC 160
                 PD + +V+VL AC  LGA+E G+WV  ++E        G   L  AL+DM+ KC
Sbjct: 203 MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G ++ A ++F  ++ R +V W ++I GLAM+G G  A+ LF  ML+ G  P++  F+ +L
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            AC+H G VD+G+  F SM+ D+GI P+ EHYGC+ D+L R+G V+EA   +  MP+E +
Sbjct: 323 CACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPH 381

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
              W  L+S+C    ++ + E + KRLI  EP     YV+L ++YA   RWE+   IR++
Sbjct: 382 ASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQM 441

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M+ RG KK  G + IEL+  ++EF+ GD  H  +++IY +L+++ R+++  GYV  TS+V
Sbjct: 442 MEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQV 501

Query: 401 LLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYN 459
           ++D+ +EEDK  AL+ HSE+LA+AF +L  P G PIRIVKNLRVC DCH  +K +SK+Y 
Sbjct: 502 IMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYE 561

Query: 460 REIVVRDRHRFHHFKD 475
           REI+VRDRHRFH F+D
Sbjct: 562 REIIVRDRHRFHVFRD 577



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 5/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG---DDIHVQNTLVHMYGS 57
           M+     P+      VLKACA +G +  G+ VH  +    FG    ++ ++  LV MY  
Sbjct: 202 MMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCK 261

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           C G +E   +VFD +  RD V W+AMIGG A  G    A++LFR+M   G  P+E T + 
Sbjct: 262 C-GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIA 320

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL ACT  G ++ GK V   ++   +         L D+  + G+V++A  L   M    
Sbjct: 321 VLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEP 380

Query: 178 IVS-WTSVIAGLAMH 191
             S W ++++   MH
Sbjct: 381 HASQWGALMSSCQMH 395


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/480 (39%), Positives = 297/480 (61%), Gaps = 7/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + GV P+K  +   L AC G + DL LGK +H  VL+     +  V   LV+MYG   
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA- 59

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV---CPDEITMV 116
           G ++   +VF  +  +D VSW+A++  Y+R  L  +A+ LFR+M + G+    PD     
Sbjct: 60  GCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFA 119

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN-ALIDMFAKCGDVDKALKLFRSMNG 175
            +L AC  L A   G+     I++   + S G+    +I+M+ KCG++  A ++F  M+ 
Sbjct: 120 FLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSE 179

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           R  V+WT++I+G A HG   E++ +F  M + G  PD V+ + +LS CSH GLV++G ++
Sbjct: 180 RDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDF 239

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           F  +  +FG+ P  +HYGCM+D+L RSG ++ A   I++MP +A  + W   ++AC    
Sbjct: 240 FLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHS 299

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
           + +  +   ++++  EP+  + YV LS+IYA    W++  ++R  M   G++K PG + I
Sbjct: 300 DTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           E+++ ++EF  GDKSH ++ EIY +L+ + R+M+ +GYVP T  VLL+++EE KE  L  
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCF 418

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSEKLAIAF LL TP G+ +RI+KNLRVC DCH+A KF+S+I  REI +RD  RFHHF+D
Sbjct: 419 HSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQD 478


>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
          Length = 639

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/381 (48%), Positives = 258/381 (67%), Gaps = 1/381 (0%)

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
           + G+   G   +A+ LF +MQ  GV PD+  +V VL AC  LG LE GKWV  +++   +
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNI 167

Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
             +V L  AL+DM+AKCG++  A+++F+ M  + +++WT++I GLAMHGRG EA+ LF +
Sbjct: 168 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 227

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
           M   GV PDD+AF+G L AC+H GLVDKGRE FDSM   +GI PKIEHYGCMVD+L R+G
Sbjct: 228 MERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNG 287

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
            + EA E ++KMP++ + +IW  L++ C     ++LAE + K  I  EP     YVLL +
Sbjct: 288 LLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGN 347

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           IYA   R     +IR +M ++G+ K PG + +E+   I++F+ GD SH   +EI    DE
Sbjct: 348 IYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDE 407

Query: 384 MGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLR 442
           +  +++ + GYVP   EVLLDI EE+KE+AL++HSEK+AIAFAL+ T    PIRIVKNLR
Sbjct: 408 IDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLR 467

Query: 443 VCNDCHSATKFISKIYNREIV 463
           VC+DCH  TK ISK+++  +V
Sbjct: 468 VCHDCHHVTKLISKVFDLTVV 488



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+      VL ACA +G L  GK VHG +        + +   LV MY  C G ++L
Sbjct: 131 GVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKC-GEMQL 189

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF  M E++ ++W+ MI G A  G  ++A++LF QM+  GV PD+I  +  L ACT 
Sbjct: 190 AMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTH 249

Query: 125 LGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWT 182
            G ++ G+ + +S + K  +   +     ++D+ A+ G +++A ++   M  +   + W 
Sbjct: 250 TGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWG 309

Query: 183 SVIAGLAMH 191
           +++AG   H
Sbjct: 310 ALMAGCRFH 318


>gi|3377941|emb|CAA17526.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1331

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/361 (50%), Positives = 256/361 (70%), Gaps = 1/361 (0%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           PD  T+V++LSAC  +GAL +GK V  ++ K  + R++   N L+D++A+CG V++A  L
Sbjct: 3   PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 62

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGL 228
           F  M  +  VSWTS+I GLA++G G EA+ LF+ M    G+ P ++ FVG+L ACSHCG+
Sbjct: 63  FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 122

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V +G EYF  M+ ++ I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+
Sbjct: 123 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 182

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            AC   G+  LAE    +++  EP H  +YVLLS++YA   RW    KIR+ M + G+KK
Sbjct: 183 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 242

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
           +PG +L+E+ N ++EF+ GDKSH QS  IY  L EM  +++  GYVP  S V +D+ EE+
Sbjct: 243 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE 302

Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
           KE+A+  HSEK+AIAF L+ TP  +PI +VKNLRVC DCH A K +SK+YNREIVVRDR 
Sbjct: 303 KENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRS 362

Query: 469 R 469
           R
Sbjct: 363 R 363



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 4/190 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ FT   +L ACA IG L LGK VH  ++K     ++H  N L+ +Y  C G +E  
Sbjct: 1   IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-GRVEEA 59

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTD 124
           + +FDEM +++SVSW+++I G A  G   +AI+LF+ M+ + G+ P EIT V +L AC+ 
Sbjct: 60  KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 119

Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSWT 182
            G ++ G ++     E+  +   +     ++D+ A+ G V KA +  +SM  +  +V W 
Sbjct: 120 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 179

Query: 183 SVIAGLAMHG 192
           +++    +HG
Sbjct: 180 TLLGACTVHG 189



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD    V LLSAC+  G +  G+     M    G+   +     ++D+  R GRV+EA
Sbjct: 1   IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VGLTRNLHSSNVLLDLYARCGRVEEA 59

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
                +M ++ N + W +LI      G  K A  + K +   E +       +  +YA
Sbjct: 60  KTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 116


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 282/476 (59%), Gaps = 23/476 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + GV  +      +L ACA  G L+ GK VH  +       ++ V N L+ MY  C G
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC-G 401

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF  M  +D +SW+ M+G                        PD  TM  +L 
Sbjct: 402 SMEGANSVFSTMVVKDIISWNTMVGELK---------------------PDSRTMACILP 440

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L ALE GK +  +I +   +    + NAL+D++ KCG +  A  LF  +  + +VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT +IAG  MHG G EA+A F EM +AG+ PD+V+F+ +L ACSH GL+++G  +F  MK
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           NDF I PK+EHY CMVD+L R+G + +A++FI+ +PI  +  IW  L+  C    +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + +R+   EP +   YVLL++IYA+  + E+  ++RE + K+G++K PG + IE+   
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGR 680

Query: 361 IYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +  FV G+ S H  SK+I  +L +M RKMK+ GY P T   L++ +E  KE AL  HSEK
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 740

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL  PP   IR+ KNLRVC DCH   KF+SK   REIV+RD +RFHHFKD
Sbjct: 741 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 796



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 158/338 (46%), Gaps = 60/338 (17%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  VL+ CAG+  L  GK VH  +     G D  +   LV  Y +C G ++ GR+VFD 
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATC-GDLKEGRRVFDT 159

Query: 72  MS---------------------------------------------------ERDSVSW 80
           M                                                    +RD +SW
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISW 219

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           ++MI GY   GL+   + +++QM   G+  D  T+++VL  C + G L +GK V S   K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
               R +   N L+DM++KCGD+D AL++F  M  R +VSWTS+IAG    G    A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
            ++M + GV  D VA   +L AC+  G +D G++  D +K +  +   +     ++DM  
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYA 398

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           + G ++ A+     M ++ + I W T++      GELK
Sbjct: 399 KCGSMEGANSVFSTMVVK-DIISWNTMV------GELK 429



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 149/291 (51%), Gaps = 26/291 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+  +  T   VL  CA  G L+LGK+VH   +K  F   I+  NTL+ MY  C G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC-G 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   +VF++M ER+ VSW++MI GY R G S  AI L +QM+  GV  D + + ++L 
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILH 360

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   G+L+ GK V  +I+   +  ++ +CNAL+DM+AKCG ++ A  +F +M  + I+S
Sbjct: 361 ACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS 420

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
           W +++  L                      PD      +L AC+    +++G+E     +
Sbjct: 421 WNTMVGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYIL 459

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +N +     + +   +VD+  + G +  A      +P   + + W  +I+ 
Sbjct: 460 RNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAG 507



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 57/263 (21%)

Query: 80  WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++A I  + +LG   +A++L    Q S +  +  T  +VL  C  L +L  GK V S I+
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGKKVHSIIK 126

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN------------------------- 174
              V     L   L+  +A CGD+ +  ++F +M                          
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 175 --------------------------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
                                      R ++SW S+I+G   +G     + ++++M+  G
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           +  D    + +L  C++ G +  G+     ++K+ F    +I     ++DM  + G +  
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDG 304

Query: 268 AHEFIQKMPIEANPIIWRTLISA 290
           A    +KM  E N + W ++I+ 
Sbjct: 305 ALRVFEKMG-ERNVVSWTSMIAG 326


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 298/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+++    + + CAG+ D+  G+ VH  V++     D+ V ++L HMY  C G
Sbjct: 57  MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC-G 115

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G      +   + VS +  I G  + G +  A++ F  M+ +GV  + +T V+ ++
Sbjct: 116 FLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT 175

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+DL AL  G+ + +   K  V++ V +  +L+ M+++CG +  + ++    +G  +V 
Sbjct: 176 SCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 235

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            +++I+    HG G +AV LF++M+ AG  P++V F+ LL ACSH GL D+G   F+ M 
Sbjct: 236 CSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT 295

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P ++HY C+VD+L RSG + EA + I  MP++ + +IW+TL+SAC  + +  +A
Sbjct: 296 KTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMA 355

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I +R+I  +P   ++YVLLS+I A   RWE  +K+RE M ++ ++K PG + +EL  +
Sbjct: 356 ERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQ 415

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F  GD+SH + +EI E L+EM  ++++ GY P  S V  D+ +E+KE +L  HSEKL
Sbjct: 416 IHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKL 475

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFA L  P G PIR++KNLRVC+DCH A K +SK+  REIVVRD  RFHHFKD
Sbjct: 476 AIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKD 530



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  RK+FDEM  R+  +W+AM+ G    GL+ +++  F  M+  G+ PDE  + ++ 
Sbjct: 14  GDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLF 73

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---DVDKALKLFRSMNGR 176
             C  L  +  G+ V +++ +  ++R + + ++L  M+ +CG   D + AL+   S+N  
Sbjct: 74  RCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN-- 131

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            IVS  + I+G   +G    A+  F  M  AGV  + V FV  +++CS    + +G++  
Sbjct: 132 -IVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQ-I 189

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            ++    G+   +     +V M  R G + ++     +     + ++   +ISA    G 
Sbjct: 190 HALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGH 248

Query: 297 LKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
            + A  + K+++  G EP   +    L+ +YA
Sbjct: 249 GQKAVGLFKQMMAAGAEP---NEVTFLTLLYA 277



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N LI  + K GD++ A KLF  M  R + +W +++AGL   G   E++  F  M   G+ 
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYF-----DSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           PD+     L   C+    V  GR+         +  D  +   + H      M  R G +
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAH------MYMRCGFL 117

Query: 266 KEAHEFIQKMPIEANPIIWRTLISA 290
           ++    ++ +P   N +   T IS 
Sbjct: 118 RDGEAALRALP-SLNIVSCNTTISG 141


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/435 (44%), Positives = 280/435 (64%), Gaps = 6/435 (1%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D    NT+V  YG C G +E  R+VF  M ER  VSWSAMI    R G  ++A+ +F QM
Sbjct: 183 DAFSWNTMVSGYGKC-GDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQM 241

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKC 160
             +G  PD + + +VL AC  LGALE G+WV  F++ + + RS   V L  AL+DM+ KC
Sbjct: 242 MGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKC 301

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G +D+A  +F  +  + +V W ++I GLAM+G G  A+ LF  ML+ G  P++  FV +L
Sbjct: 302 GCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVL 361

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            AC+H G VD+G+E F SM  D GI P+ EHYGC+ D+L R+G ++EA   +  MP+E +
Sbjct: 362 CACTHTGRVDEGKEIFRSM-CDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPH 420

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
              W  L+S+C     + + E + K+LI  EP     YV+L ++YA    WE    +R++
Sbjct: 421 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKM 480

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M++RG KK  G + IE +  ++EF  GD  H Q+++IY +L++M ++++  GYV  TS+V
Sbjct: 481 MEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQV 540

Query: 401 LLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYN 459
           L+D+ +EEDK + L+ HSE+LA+AF +L TP   PIRIVKNLRVC DCH   K +SK+Y 
Sbjct: 541 LMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQ 600

Query: 460 REIVVRDRHRFHHFK 474
           REI++RDRHRFH F+
Sbjct: 601 REIIMRDRHRFHLFR 615



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG---DDIHVQNTLVHMYGS 57
           M+  G  P+      VLKACA +G L  G+ VH  +     G   D++ ++  LV MY  
Sbjct: 241 MMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCK 300

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           C G ++    VFD +  +D V W+AMIGG A  G    A++LFR+M   G  P+E T V 
Sbjct: 301 C-GCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVV 359

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           VL ACT  G ++ GK +   +    +         L D+  + G +++A  +   M    
Sbjct: 360 VLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEP 419

Query: 178 IVS-WTSVIAGLAMH 191
             S W ++++   MH
Sbjct: 420 HASQWGALMSSCLMH 434


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 287/474 (60%), Gaps = 4/474 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+  +      V  A   +GD+    +VHG   +    +++ V N+++ M+  C G  
Sbjct: 52  EEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKC-GNT 110

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E  R VFD M ERD +SW++M+ GY + G +T+A+ LF +M+ S   P  +T + ++SAC
Sbjct: 111 EKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSAC 170

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM--NGRTIVS 180
             LG   +G+    FI    +     L NAL+DM+AKCGD++KA+ LF  +    R   S
Sbjct: 171 AYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGS 230

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G  MHG G EA+ LF  M E GV P+   F  +LSACSH GL+D+GR+ F  MK
Sbjct: 231 WNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK 290

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               +  + +H+ C+VDML R+G ++EA + I++MP   +  +W  L+ AC   G ++L 
Sbjct: 291 R-LSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELG 349

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           ++    L+  EP H   YVL+S+IYA   +W++  K+R+ M  +G+KK    ++IE   +
Sbjct: 350 KTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKD 409

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I  F   D+ +    E+Y+ ++ +  +MK AGYVP  S  L D+ EEDKE  LN HSEKL
Sbjct: 410 ILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKL 469

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF +LK  PG  IR+ KNLRVCNDCHSA K+IS IY R+I+VRD +RFHHF+
Sbjct: 470 AVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQ 523



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 146/277 (52%), Gaps = 14/277 (5%)

Query: 54  MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDE 112
           MY  C   ++  RK+FDEMS +D V W+AMI  Y +     +A+ LF++MQ   G+  D 
Sbjct: 1   MYAKCGLFVDC-RKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADS 59

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           I +V+V SA   LG ++    V  +  ++ +   + + N+++ M  KCG+ +KA  +F  
Sbjct: 60  IAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDM 119

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           M  R ++SW S+++G   +G+  EA+ LF+EM ++   P  V  + ++SAC++ G    G
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 233 REYFDSMKNDFGIIPKIE----HYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTL 287
           R++     +DF +  ++E        ++DM  + G +++A +    + P E N   W  L
Sbjct: 180 RKF-----HDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVL 234

Query: 288 ISACCARGELKLAESITKRLI--GNEPMHESNYVLLS 322
           IS     G  K A  +  R+   G EP H +   +LS
Sbjct: 235 ISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILS 271



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 4/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +    P   T   ++ ACA +G  +LG+  H  ++  +   D ++ N L+ MY  C G
Sbjct: 151 MRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKC-G 209

Query: 61  GIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E    +F+ +  +ER++ SW+ +I GY   G   +A++LF +MQ  GV P+  T  ++
Sbjct: 210 DLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSI 269

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRT 177
           LSAC+  G ++ G+   + +++  V         ++DM  + G + +A  L + M +  +
Sbjct: 270 LSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPS 329

Query: 178 IVSWTSVIAGLAMHG 192
              W +++    +HG
Sbjct: 330 DGVWGALLLACKIHG 344


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 295/475 (62%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V PN +TY  VL++C G+ D+ +   +H  ++K     D+ V++ L+ ++    G
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKL-G 208

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    VFDEM   D++ W+++IGG+A+   S  A++LF++M+ +G   ++ T+ +VL 
Sbjct: 209 EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G      I K   ++ + L NAL+DM+ KCG ++ AL++F  M  R +++
Sbjct: 269 ACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVIT 326

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+GLA +G   EA+ LFE M  +G  P+ +  VG+L ACSH GL++ G  YF SMK
Sbjct: 327 WSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +GI P  EHYGCM+D+L ++G++ +A + + +M  E + + WRTL+ AC  +  + LA
Sbjct: 387 KLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLA 446

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K++I  +P     Y LLS+IYA   +W+   +IR  M  RG+KK PG + IE++ +
Sbjct: 447 EYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GD SH Q  E+ + L+++  ++   GYVP T+ VL D+  E  ED+L  HSEKL
Sbjct: 507 IHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKL 566

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AF L+  P    IRI KNLR+C DCH   K  SK+  R IV+R   R+HHF+D
Sbjct: 567 ALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQD 621



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD---AIDLFRQMQISGVCPDEITMVTV 118
           I+L R V        S   + ++  + RL    D   A+     +Q  G+  D  T   +
Sbjct: 8   IKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSEL 67

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  C    A+  G  +   +        + L N LI+M+ K   ++ A +LF  M  R +
Sbjct: 68  IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127

Query: 179 VSWTSVIAGLA---MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------HCG 227
           +SWT++I+  +   +H + LE + L   ML   V P+   +  +L +C+        HCG
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG 184

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           ++ +G E              +     ++D+  + G  ++A     +M +  + I+W ++
Sbjct: 185 IIKEGLE------------SDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSI 231

Query: 288 ISACCARGELKLAESITKRL 307
           I          +A  + KR+
Sbjct: 232 IGGFAQNSRSDVALELFKRM 251


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/474 (39%), Positives = 287/474 (60%), Gaps = 1/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M + G+  +   +   + ACAGI  LN G+ +H       + DD+ V N LV +Y  C G
Sbjct: 565  MQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARC-G 623

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +      FD++  +D++SW+++I G+A+ G   +A+ LF QM  +G   +  T    +S
Sbjct: 624  KVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVS 683

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A  ++  +++GK + + I K   +    + N LI ++AKCG++D A + F  M  +  +S
Sbjct: 684  AAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS 743

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W +++ G + HG G +A++LFE+M + GV P+ V FVG+LSACSH GLVD+G +YF SM+
Sbjct: 744  WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMR 803

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               G++PK EHY C+VD+L RSG +  A  F+++MPI+ + ++ RTL+SAC     + + 
Sbjct: 804  EVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIG 863

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  EP   + YVLLS++YA   +W  + + R++M  RG+KK PG + IE++N 
Sbjct: 864  EFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNS 923

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ F  GD+ H    +IYE L ++     + GY+P T+ +L D     K      HSEKL
Sbjct: 924  VHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKL 983

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            AIAF LL     TPI + KNLRVC DCH+  K++SKI +R IVVRD +RFHHFK
Sbjct: 984  AIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFK 1037



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML+  V P++ TY  VL+ C G GD+     + +H   +   + + + V N L+ +Y   
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFK- 217

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +   +KVFD + +RDSVSW AM+ G ++ G   +A+ LF QM  SGV P      +V
Sbjct: 218 NGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSV 277

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSACT +   +VG+ +   + KQ  +    +CNAL+ ++++ G+   A ++F +M  R  
Sbjct: 278 LSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDE 337

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS+ S+I+GL+  G   +A+ LF++M    + PD V    LLSACS  G +  G++ F S
Sbjct: 338 VSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHS 396

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                G+   I   G ++D+  +   +K AHEF      E N ++W  ++ A
Sbjct: 397 YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVA 447



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 161/302 (53%), Gaps = 3/302 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  T   +L AC+ +G L +GK  H   +K     DI ++  L+ +Y  C   I+  
Sbjct: 368 LKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSD-IKTA 426

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            + F      + V W+ M+  Y  L    ++  +F QMQ+ G+ P++ T  ++L  C+ L
Sbjct: 427 HEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL 486

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            A+++G+ + + + K     +V + + LIDM+AK G +D ALK+FR +  + +VSWT++I
Sbjct: 487 RAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMI 546

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           AG A H +  EA+ LF+EM + G+  D++ F   +SAC+    +++G++   +     G 
Sbjct: 547 AGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ-IHAQACVSGY 605

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     +V +  R G+V++A+    K+  + N I W +LIS     G  + A S+  
Sbjct: 606 SDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN-ISWNSLISGFAQSGHCEEALSLFS 664

Query: 306 RL 307
           ++
Sbjct: 665 QM 666



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 163/323 (50%), Gaps = 6/323 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P  + +  VL AC  +    +G+ +HG VLK  F  + +V N LV +Y    G    
Sbjct: 266 GVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRL-GNFIP 324

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+ M +RD VS++++I G ++ G S  A++LF++M +  + PD +T+ ++LSAC+ 
Sbjct: 325 AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSS 384

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +GAL VGK   S+  K  ++  + L  AL+D++ KC D+  A + F S     +V W  +
Sbjct: 385 VGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVM 444

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           +    +     E+  +F +M   G+ P+   +  +L  CS    VD G + +   +K  F
Sbjct: 445 LVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF 504

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                +     ++DM  + G++  A +  +++  E + + W  +I+      +   A ++
Sbjct: 505 QFNVYVS--SVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAEALNL 561

Query: 304 TKRLIGNEPMHESNYVLLSHIYA 326
            K +  ++ +H  N    S I A
Sbjct: 562 FKEM-QDQGIHSDNIGFASAISA 583



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 22/317 (6%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M E GV  N  TY ++L  C   G  + G  +HG +LK  F  ++ +   L+ +Y   G 
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
            +G +     VFDEM  R    W+ ++  +    ++   + LFR+M    V PDE T   
Sbjct: 119 LDGAV----TVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAG 174

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVN----RSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           VL  C   G  +V       I  + +      S+ +CN LID++ K G ++ A K+F  +
Sbjct: 175 VLRGC---GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             R  VSW ++++GL+  G   EAV LF +M  +GV P    F  +LSAC+       G 
Sbjct: 232 QKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGE 291

Query: 234 EYFD-SMKNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +     +K  F     +E Y C  +V +  R G    A +    M ++ + + + +LIS 
Sbjct: 292 QLHGLVLKQGF----SLETYVCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLISG 346

Query: 291 CCARGELKLAESITKRL 307
              +G    A  + K++
Sbjct: 347 LSQQGYSDKALELFKKM 363



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 47/305 (15%)

Query: 81  SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140
           +A+   Y+      + I+    M+  GV  +  T + +L  C   G    G  +   I K
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
                 V LC  L+D++   GD+D A+ +F  M  R +  W  V+            + L
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 201 FEEMLEAGVPPDDVAFVGLLSACS------HC---------------------------- 226
           F  ML+  V PD+  + G+L  C       HC                            
Sbjct: 157 FRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYF 216

Query: 227 --GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANP 281
             G ++  ++ FD ++    +      +  M+  L +SG  +EA     +M    +   P
Sbjct: 217 KNGFLNSAKKVFDGLQKRDSV-----SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTP 271

Query: 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTKIRE 339
            I+ +++SAC      K+ E +   L+  +      YV   L  +Y++L  +    ++  
Sbjct: 272 YIFSSVLSACTKVEFYKVGEQL-HGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN 330

Query: 340 VMDKR 344
            M +R
Sbjct: 331 AMLQR 335


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 298/475 (62%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+++    + + CAG+ D+  G+ VH  V++     D+ V ++L HMY  C G
Sbjct: 165 MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC-G 223

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G      +   + VS +  I G  + G +  A++ F  M+ +GV  + +T V+ ++
Sbjct: 224 FLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT 283

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+DL AL  G+ + +   K  V++ V +  +L+ M+++CG +  + ++    +G  +V 
Sbjct: 284 SCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 343

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            +++I+    HG G +AV LF++M+ AG  P++V F+ LL ACSH GL D+G   F+ M 
Sbjct: 344 CSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT 403

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P ++HY C+VD+L RSG + EA + I  MP++ + +IW+TL+SAC  + +  +A
Sbjct: 404 KTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMA 463

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I +R+I  +P   ++YVLLS+I A   RWE  +K+RE M ++ ++K PG + +EL  +
Sbjct: 464 ERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQ 523

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F  GD+SH + +EI E L+EM  ++++ GY P  S V  D+ +E+KE +L  HSEKL
Sbjct: 524 IHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKL 583

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFA L  P G PIR++KNLRVC+DCH A K +SK+  REIVVRD  RFHHFKD
Sbjct: 584 AIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKD 638



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 156/323 (48%), Gaps = 18/323 (5%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           ++FT   +L A A +GD    + +   + K     ++   N L+  Y    G +E  RK+
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPK----RNVMSWNILIGGYVK-NGDLETARKL 130

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEM  R+  +W+AM+ G    GL+ +++  F  M+  G+ PDE  + ++   C  L  +
Sbjct: 131 FDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDV 190

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---DVDKALKLFRSMNGRTIVSWTSVI 185
             G+ V +++ +  ++R + + ++L  M+ +CG   D + AL+   S+N   IVS  + I
Sbjct: 191 VSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN---IVSCNTTI 247

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G   +G    A+  F  M  AGV  + V FV  +++CS    + +G++   ++    G+
Sbjct: 248 SGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQ-IHALAIKTGV 306

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
              +     +V M  R G + ++     +     + ++   +ISA    G  + A  + K
Sbjct: 307 DKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGHGQKAVGLFK 365

Query: 306 RLI--GNEPMHESNYVLLSHIYA 326
           +++  G EP   +    L+ +YA
Sbjct: 366 QMMAAGAEP---NEVTFLTLLYA 385


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 288/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  +++T+  +L AC  +     GK +H   ++  +  +I V + LV MY  C  
Sbjct: 272 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRS 331

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I L   VF  M+ ++ +SW+AMI GY + G   +A+ +F +MQ  G+ P++ T+ +V+S
Sbjct: 332 -IRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVIS 390

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C +L +LE G           +   + + +AL+ ++ KCG ++ A +LF  M     VS
Sbjct: 391 SCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVS 450

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           +T++++G A  G+  E + LFE+ML  GV P+ V F+G+LSACS  GLV+KG  YF SM+
Sbjct: 451 YTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQ 510

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI+   +HY CM+D+  RSGR+KEA EFI++MP   + I W TL+SAC  RG++++ 
Sbjct: 511 QDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIG 570

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   + L+  +P + ++YVLL  ++A    W +   +R  M  R +KK PG + I+  N 
Sbjct: 571 KWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNR 630

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F   D+SH  S  IYE L  +  KM + GY P  S VL D+ + +K   L+ HSEKL
Sbjct: 631 VHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKL 690

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+  P   PIR+VKNLRVC DCH+ATKFISKI  R+I+VRD  RFH F +
Sbjct: 691 AIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSN 745



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 167/324 (51%), Gaps = 34/324 (10%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-------- 57
           V P++ T   ++ A + +GD  LG+ VH  +++  FG      + LV MY          
Sbjct: 145 VRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAK 204

Query: 58  -----------------------CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                  C+  +E  R VF+ M +RDS++W+ M+ G  + GL +
Sbjct: 205 RVFDEMVVKNVVMYNTMITGLLRCKM-VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQS 263

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+D+FR+M+  GV  D+ T  ++L+AC  L A E GK + ++  + + + ++ + +AL+
Sbjct: 264 EALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALV 323

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM++KC  +  A  +FR M  + I+SWT++I G   +G G EAV +F EM   G+ P+D 
Sbjct: 324 DMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDF 383

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
               ++S+C++   +++G + F  M    G+ P I     +V +  + G +++AH    +
Sbjct: 384 TLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDE 442

Query: 275 MPIEANPIIWRTLISACCARGELK 298
           MP   + + +  L+S     G+ K
Sbjct: 443 MPFH-DQVSYTALVSGYAQFGKAK 465


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/477 (40%), Positives = 289/477 (60%), Gaps = 15/477 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN  TY  +LK+CA I D + G+ VH  V+K        V N LV MY    G
Sbjct: 350 MLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAE-SG 408

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTV 118
            +E  R+VF+++ ER  +               T+  D     +I    V     T  ++
Sbjct: 409 CMEEARRVFNQLYERSMIP------------CITEGRDFPLDHRIVRMDVGISSSTFASL 456

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +SA   +G L  G+ + +   K        + N+L+ M+++CG ++ A + F  +  R +
Sbjct: 457 ISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNV 516

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +SWTS+I+GLA HG    A++LF +M+  GV P+DV ++ +LSACSH GLV +G+EYF S
Sbjct: 517 ISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRS 576

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+ D G+IP++EHY CMVD+L RSG VKEA EFI +MP++A+ ++W+TL+ AC +   ++
Sbjct: 577 MQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIE 636

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           + E   K ++  EP   + YVLLS++YA    W++  +IR  M    + K  G + +E++
Sbjct: 637 VGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVE 696

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N  +EF  GD SH ++++IY  LD + R++K  GYVP TS VL D+++E KE  L +HSE
Sbjct: 697 NTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSE 756

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           K+A+AF L+ T    PIRI KNLRVC DCHSA K++SK   REI++RD +RFH  KD
Sbjct: 757 KIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKD 813



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 24  GDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-RDSVSWS 81
           GDL LG+++H  +L+    D D  V N+L+ +Y  C G +   R VFD M   RD VSW+
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRC-GAVASARNVFDGMRGLRDIVSWT 120

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC--TDLGALEVGKWVESFIE 139
           AM    AR G    ++ L  +M  SG+ P+  T+     AC   +L  L  G  +    +
Sbjct: 121 AMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK 180

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
             +    V + +ALIDM A+ GD+  A K+F  +  +T+V WT +I+         EAV 
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF + LE G  PD      ++SAC+  G V  G +   S+    G+         +VDM 
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMY 299

Query: 260 CRSG---RVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            +S     +  A++  ++MP + + I W  LIS     G
Sbjct: 300 AKSNIGQAMDYANKVFERMP-KNDVISWTALISGYVQSG 337



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY 55
           MLE G+ PN +T      AC       +    +   VH   L   +G D+ V + L+ M 
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGL---WGTDVAVGSALIDML 198

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
               G +   RKVFD + E+  V W+ +I  Y +   + +A++LF      G  PD  TM
Sbjct: 199 AR-NGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTM 257

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---DVDKALKLFRS 172
            +++SACT+LG++ +G  + S   +  +     +   L+DM+AK      +D A K+F  
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFER 317

Query: 173 MNGRTIVSWTSVIAGLAMHG-RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
           M    ++SWT++I+G    G +  + +ALF EML   + P+ + +  +L +C+     D 
Sbjct: 318 MPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDS 377

Query: 232 GRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           GR+ +   +K++      + +   +V M   SG ++EA     ++
Sbjct: 378 GRQVHAHVIKSNQASAHTVGN--ALVSMYAESGCMEEARRVFNQL 420


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/477 (39%), Positives = 291/477 (61%), Gaps = 3/477 (0%)

Query: 1   MLEYGVS-PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   VS P+ FT+ F LK+C  I  +     +HG+V++  F DD  V  +LV  Y S  
Sbjct: 97  MLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCY-SAN 155

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E+  KVFDEM  RD VSW+ MI  ++ +GL   A+ ++++M   GVC D  T+V +L
Sbjct: 156 GSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALL 215

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S+C  + AL +G  +            V + NALIDM+AKCG ++ A+ +F  M  R ++
Sbjct: 216 SSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVL 275

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W S+I G  +HG G+EA++ F +M+ +GV P+ + F+GLL  CSH GLV +G E+F+ M
Sbjct: 276 TWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIM 335

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            + F + P ++HYGCMVD+  R+G+++ + E I       +P++WRTL+ +C     L+L
Sbjct: 336 SSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLEL 395

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   K+L+  E  +  +YVL++ IY+     +    +R+++    ++ +PG + IE+ +
Sbjct: 396 GEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGD 455

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSE-VLLDINEEDKEDALNKHSE 418
           ++++FV  DK H +S  IY  L E+  +   AGY P  S      +++     A   HSE
Sbjct: 456 QVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSE 515

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAIA+ L++T  GT +RI KNLRVC DCHS TK++SK +NREI+VRDR RFHHF D
Sbjct: 516 KLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFAD 572


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 291/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V PN+F+   VL+ACA +  L+LG+ +H  V+K  +  ++ V N L+ +Y  C  
Sbjct: 343 MMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRN 402

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++F  + + + VSW+ +I GY + G + DA+ +F++M+ + V   ++T  +VL 
Sbjct: 403 -MENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLR 461

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +  +++    + S IEK   N    +CN+LID +AKCG +  ALK+F S+    +VS
Sbjct: 462 ACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVS 521

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G A+HGR  +A+ LF  M ++   P+DV FV LLS C   GLV++G   F+SM 
Sbjct: 522 WNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMT 581

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P ++HY C+V +L R+GR+ +A +FI  +P   +P++WR L+S+C     + L 
Sbjct: 582 MDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALG 641

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   ++++  EP  E+ YVLLS++YA     ++   +R+ M   G+KK  G + +E+  E
Sbjct: 642 KFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGE 701

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G   H   + I  ML+ +  K  + GYVP  + VL D++EE+K   L  HSE+L
Sbjct: 702 VHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERL 761

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L  TPPG PIRI+KNLR C DCH+  K ISKI  REIVVRD +RFHHF +
Sbjct: 762 ALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDE 816



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 11/307 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN F    VLKA   +    LGK +HG  +K     + HV   L+ MY  C G IE 
Sbjct: 246 GAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKC-GYIED 304

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF+ +   D + WS +I  YA+   +  A ++F +M  S V P+E ++  VL AC +
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACAN 364

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  L++G+ + + + K      + + NAL+D++AKC +++ +L++FRS+     VSW ++
Sbjct: 365 VAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTI 424

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD----SMK 240
           I G    G   +A+++F+EM  A V    V F  +L AC++   +    +       S  
Sbjct: 425 IVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTF 484

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N+  I+        ++D   + G +++A +  + + I+ + + W  +IS     G    A
Sbjct: 485 NNDTIV-----CNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDA 538

Query: 301 ESITKRL 307
             +  R+
Sbjct: 539 LELFNRM 545



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 147/299 (49%), Gaps = 3/299 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N F    +LK    +    L   +H    K     +  V ++L+  Y  C G +   R V
Sbjct: 149 NHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLC-GAVSHARCV 207

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD +  +D+V+W+AM+  Y+   +  DA++ F +M+++G  P+   + +VL A   L + 
Sbjct: 208 FDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSA 267

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            +GK +     K + +    +  AL+DM+AKCG ++ A  +F  +    ++ W+ +I+  
Sbjct: 268 VLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRY 327

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A   +  +A  +F  M+ + V P++ +  G+L AC++   +D G++   ++    G   +
Sbjct: 328 AQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQ-IHNLVIKLGYESE 386

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +     ++D+  +   ++ + E  + +  +AN + W T+I   C  G  + A S+ + +
Sbjct: 387 LFVGNALMDVYAKCRNMENSLEIFRSLR-DANEVSWNTIIVGYCQSGFAEDALSVFQEM 444



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 137/280 (48%), Gaps = 13/280 (4%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGD----DIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +L+ C   GD   G++VH  V+  Q G     D    N L+++Y    G +   R++FD 
Sbjct: 53  LLQRCIARGDARAGRAVHARVV--QRGGVAQLDTFCANVLLNLYAKL-GPLAAARRLFDG 109

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M ER+ VS+  ++ GYA  G   +A  LFR++Q  G   +   + T+L     + A  + 
Sbjct: 110 MPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLT 169

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
             + +   K   +R+  + ++LID ++ CG V  A  +F  +  +  V+WT++++  + +
Sbjct: 170 CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSA--CSHCGLVDKGREYFDSMKNDFGIIPKI 249
               +A+  F +M  AG  P+      +L A  C    ++ KG  +  ++K      P +
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKG-IHGCAVKTLCDTEPHV 288

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
              G ++DM  + G +++A    + +P + + I+W  LIS
Sbjct: 289 G--GALLDMYAKCGYIEDARTVFEIIPHD-DVILWSFLIS 325


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/416 (44%), Positives = 270/416 (64%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++  R+VFD M  R+ VSW++MI GY +     DA+++F +M+  GV  +     + L
Sbjct: 178 GLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSAL 237

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            ACT  GAL  G+ +  ++E+  +     L  A++DM+ KCG VD+A ++F S+  R + 
Sbjct: 238 VACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLT 297

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W  +I G A+HGR  +A+ LF +M  AGV PDDV  + +L+AC+H G V +GR Y + +
Sbjct: 298 TWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHI 357

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            +  GI PK EHYGCMVD+  R+G++ EA + I +MP++ +  +   L+ AC   G++ L
Sbjct: 358 VSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDL 417

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E+I  R+I  +P +   YVLL+++ A   RW++  K+R +MD+R + K  G ++IE+D 
Sbjct: 418 GEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDG 477

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           E  EF CG+  H Q++EIY M  +M  +++  GYVP T E L D+ EEDKE AL  HSEK
Sbjct: 478 EACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEK 537

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LL+  P   +RI KNLRVC DCH ATK++S+++ REIVVRDR RFHHFKD
Sbjct: 538 LAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKD 593


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/466 (38%), Positives = 292/466 (62%), Gaps = 2/466 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN FT+  +LKA        +G+ +H   +K+ + DD++V + L+ MY  C G +++   
Sbjct: 39  PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC-GRMDMAIA 97

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD++  ++ VSW+A+I G+AR G     + +F +MQ +G      T  +V SA   +GA
Sbjct: 98  VFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGA 157

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           LE GKWV + + K     S  + N ++DM+AK G +  A K+F  ++ + +V+W S++  
Sbjct: 158 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTA 217

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A +G G EAV  FEEM + GV  + + F+ +L+ACSH GLV +G++YFD MK +  + P
Sbjct: 218 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EHNLEP 276

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +I+HY  +VD+L R+G + +A  FI KMP++    +W  L+ +C      K+ +     +
Sbjct: 277 EIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHV 336

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG 367
              +P      VLL +IYA   +W+   ++R++M   G+KK P  + +E++N ++ FV  
Sbjct: 337 FELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAN 396

Query: 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
           D +H +S+EIY+  +E+  +++KAGYVP T  VLL ++E++++  L  HSEK+A+AFAL+
Sbjct: 397 DDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALI 456

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
             P G  IRI+KN+R+C DCHSA ++ISK++ REIVVRD +RFHHF
Sbjct: 457 NMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHF 502



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 12/229 (5%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           MS RD  SW+++I GYA+  +  +A+ L   M      P+  T  ++L A     +  +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + + +   K   +  V + +AL+DM+A+CG +D A+ +F  +  +  VSW ++IAG A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G G   + +F EM   G       +  + SA +  G +++G+     M      I   E 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHM------IKSGER 174

Query: 252 YGCMV-----DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               V     DM  +SG + +A +    +  + + + W ++++A    G
Sbjct: 175 LSAFVGNTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTAFAQYG 222


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/476 (40%), Positives = 294/476 (61%), Gaps = 14/476 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +  F LKA A   D +    +H  VL+     D+ +  TL+  Y  C G +   RK
Sbjct: 111 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKC-GDLASARK 169

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ------ISGVCPDEITMVTVLSA 121
           VFDEM+ RD  +W++++ G A+      A+ LF ++        S   P+E+T+V VLSA
Sbjct: 170 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSA 229

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV 179
           C  +G L+ G +V  F +K  ++R+V +CN+LIDM++KCG + +AL +F S+    RT+V
Sbjct: 230 CAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLV 289

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I   +MHG G +A+ LF+EM    + PD V ++ +L  C+H GLVD G   F+SM
Sbjct: 290 SYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM 348

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ +  MP  A+ ++W+TL+ A    G ++L
Sbjct: 349 R----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVEL 404

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+D 
Sbjct: 405 AELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDG 464

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  L+++  ++ + GY P TS VL DI EE+K+ AL  HSEK
Sbjct: 465 VMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEK 524

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  +R++KNLR+C DCH   K ISK Y R IV+RDR RFH F+D
Sbjct: 525 LAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFED 580


>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
 gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
          Length = 587

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 292/479 (60%), Gaps = 28/479 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN FTYP + +A      L L       +       D  +   L+ ++  C G I   
Sbjct: 119 LRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFARC-GRIASC 177

Query: 66  RKVFDEMSERDSVSWSAMIGGYARL-----GLSTDAID----LFRQMQISGVCPDEITMV 116
           R+VFD ++  D  +W+A++  YARL       +T A D    LF +M    + P+EIT+V
Sbjct: 178 RRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLV 237

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            V+ AC +LGA+  G W                  AL++M+A CG +D A ++F + + R
Sbjct: 238 AVIGACGELGAVSHGVW------------------ALVEMYAGCGRLDLAEQVFAAASDR 279

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
               + +++ GLA+HG G  A++L + M  AGVP D V  + ++ AC+H GLVD+G +YF
Sbjct: 280 DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYF 339

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D M+ +FGI P+IEHYGCM+DML R+GR+  A + I +M I  N  I+R+LI AC   G+
Sbjct: 340 DRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGK 399

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           L+L E +   L+  EP    N+VL+S+ YA+  RWE   K R+ M   G+ K PGS+L++
Sbjct: 400 LELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVD 459

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
           ++  ++EF+ GDK+H  SKEIY M++E+  ++ + G   +TS  L D+ EEDK D L+ H
Sbjct: 460 INGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYH 519

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE+LAIAFAL+ + PG PIRI+KNLRVC DCH + K +S++Y REIV+RDR RFHHF+D
Sbjct: 520 SERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRD 578



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 29/218 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   + PN+ T   V+ AC       LG   HG                LV MY  C G
Sbjct: 224 MLSLAIEPNEITLVAVIGACG-----ELGAVSHGVW-------------ALVEMYAGC-G 264

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++L  +VF   S+RD+  ++AM+ G A  G    A+ L  +M  +GV  D +T+++V+ 
Sbjct: 265 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 324

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G ++ G      +E +  +   +     +IDM ++ G ++ A KL   M    IV
Sbjct: 325 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEM---LIV 381

Query: 180 S----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                + S+I    +HG+      +  E++   + PDD
Sbjct: 382 PNAAIYRSLIRACGIHGKLELGEKMIAELMR--LEPDD 417


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/448 (44%), Positives = 282/448 (62%), Gaps = 6/448 (1%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGG 86
           LGK +HG  LK+   D+   +N L+  YG C G ++   K+F  MSER D V+W++MI G
Sbjct: 255 LGKQIHGLALKYNIADEATTENALIACYGKC-GEMDGCEKIFSRMSERRDDVTWNSMISG 313

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
           Y    L   A+DL   M  +G   D     TVLSA   +  LE G  V +   +  +   
Sbjct: 314 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 373

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-L 205
           V + +AL+DM++KCG +D AL+ F +M  R   SW S+I+G A HG+G EA+ LF  M L
Sbjct: 374 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKL 433

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +   PPD V FVG+LSACSH GL+++G ++F+SM + +G+ P+IEH+ CM D+L R+G +
Sbjct: 434 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGEL 493

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACC-ARG-ELKLAESITKRLIGNEPMHESNYVLLSH 323
            +  +FI KMP++ N +IWRT++ ACC A G + +L +   + L   EP +  NYVLL +
Sbjct: 494 DKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 553

Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
           +YA   RWE   K R+ M    +KK  G + + + + ++ FV GDKSH  +  IY+ L E
Sbjct: 554 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKE 613

Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT-PIRIVKNLR 442
           + RKM+ AGYVP T   L D+ +E+KE+ L+ HSEKLA+AF L      T PIRI+KNLR
Sbjct: 614 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 673

Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRF 470
           VC DCHSA K+ISKI  R+I++RD +R+
Sbjct: 674 VCGDCHSAFKYISKIEGRQIILRDSNRY 701



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 135/267 (50%), Gaps = 4/267 (1%)

Query: 26  LNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           L  G+ VHG V+     D  + + N LV+MY  C G I   R+VF  M E+DSVSW++MI
Sbjct: 49  LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC-GSIADARRVFCFMMEKDSVSWNSMI 107

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
            G  + G   +A++ ++ M+   + P   T+++ LS+C  L   ++G+ +     K  ++
Sbjct: 108 TGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGID 167

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-EAVALFEE 203
            +V + NAL+ ++A+ G +++  K+F SM     VSW S+I  LA   R L EAVA F  
Sbjct: 168 LNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLN 227

Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
            L AG   + + F  +LSA S     + G++    +   + I  +      ++    + G
Sbjct: 228 ALRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKYNIADEATTENALIACYGKCG 286

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
            +    +   +M    + + W ++IS 
Sbjct: 287 EMDGCEKIFSRMSERRDDVTWNSMISG 313



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 147/323 (45%), Gaps = 7/323 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  + + P  FT    L +CA +    LG+ +HG  LK     ++ V N L+ +Y    G
Sbjct: 126 MRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET-G 184

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVL 119
            +   RK+F  M E D VSW+++IG  A    S  +A+  F     +G   + IT  +VL
Sbjct: 185 YLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVL 244

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           SA + L   E+GK +     K  +       NALI  + KCG++D   K+F  M+ R   
Sbjct: 245 SAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDD 304

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W S+I+G   +    +A+ L   ML+ G   D   +  +LSA +    +++G E   +
Sbjct: 305 VTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGME-VHA 363

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC--ARGE 296
                 +   +     +VDM  + GR+  A  F   MP+  N   W ++IS      +GE
Sbjct: 364 CSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGYARHGQGE 422

Query: 297 LKLAESITKRLIGNEPMHESNYV 319
             L      +L G  P     +V
Sbjct: 423 EALKLFANMKLDGQTPPDHVTFV 445



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ G   + F Y  VL A A +  L  G  VH   ++     D+ V + LV MY  C G
Sbjct: 330 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC-G 388

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
            ++   + F+ M  R+S SW++MI GYAR G   +A+ LF  M++ G   PD +T V VL
Sbjct: 389 RLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVL 448

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
           SAC+  G LE G K  ES  +   +   +   + + D+  + G++DK       M  +  
Sbjct: 449 SACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPN 508

Query: 178 IVSWTSVI-AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
           ++ W +V+ A    +GR  E      EML    P + V +V L
Sbjct: 509 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLL 551


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/432 (42%), Positives = 270/432 (62%), Gaps = 1/432 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G ++  R +F  M ++D+VSW+AM+  Y+++G S + + LF++M
Sbjct: 385 NVASWNTMLTGYAQA-GMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              G   +      VLS C D+ ALE G  + S + K        + NAL+ M+ KCG +
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSM 503

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++A   F  M  R +VSW ++IAG A HG G EA+ +F+ M +    PDD+  VG+L+AC
Sbjct: 504 EEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 563

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLV+KG  YF SM  DFG+  K EHY CM+D+L R+GR+ EA   ++ MP E +  +
Sbjct: 564 SHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTM 623

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A       +L  +  +++   EP +   YVLLS+IYA   +W    K+R +M +
Sbjct: 624 WGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHE 683

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + IE+ N+++ F  GD  H + ++IY  L+++  +MKKAGYV  T  VL D
Sbjct: 684 RGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHD 743

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+A+ +LK PPG PIR++KNLRVC DCH+A K IS I  R I+
Sbjct: 744 VEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLII 803

Query: 464 VRDRHRFHHFKD 475
           +RD +RFHHF+D
Sbjct: 804 LRDSNRFHHFRD 815



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 47/286 (16%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           IE  +K+F++M +RD VSW+ M+ GYAR G   +A  LF    I     D  T   ++S 
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIR----DVFTWTAIVSG 333

Query: 122 CTDLGALEVGK-------------W---VESFIEKQMVN-----------RSVGLCNALI 154
               G LE  K             W   + ++++++M+            R+V   N ++
Sbjct: 334 YAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTML 393

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
             +A+ G +D+A  +F  M  +  VSW +++A  +  G   E + LF+EM   G   +  
Sbjct: 394 TGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRS 453

Query: 215 AFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIEHYGCMVD-----MLCRSGRVKEA 268
           AF  +LS C+    ++ G +    + K  +G+       GC V      M  + G ++EA
Sbjct: 454 AFACVLSTCADIAALECGMQLHSRLIKAGYGV-------GCFVGNALLAMYFKCGSMEEA 506

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESI--TKRLIGNEP 312
           H   ++M  E + + W T+I+     G  K A  +  T R    +P
Sbjct: 507 HSAFEEME-ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKP 551



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 133/297 (44%), Gaps = 33/297 (11%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  +L   A  G L    S   ++ +     D    NTL+H  G      ++ R +FDE
Sbjct: 140 TYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSYNTLLHALGVSSSLADV-RALFDE 194

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGAL- 128
           M  +DSVS++ MI  +A  GL + A   F       + P  D ++   +L+A    G + 
Sbjct: 195 MPVKDSVSYNVMISSHANHGLVSLARHYF------DLAPEKDAVSWNGMLAAYVRNGRIQ 248

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E  +  +S  E   ++      NAL+  + +   +++A K+F  M  R +VSW ++++G 
Sbjct: 249 EARELFDSRTEWDAIS-----WNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGY 303

Query: 189 AMHGRGLEAVALFEEMLEAGVPP--DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
           A  G   EA  LF+      V P  D   +  ++S  +  G++++ +  FD+M +   + 
Sbjct: 304 ARRGDMAEARRLFD------VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV- 356

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                +  M+    +   ++EA E    MP   N   W T+++     G L  A +I
Sbjct: 357 ----SWNAMMAAYVQRRMMEEAKELFDAMPCR-NVASWNTMLTGYAQAGMLDEARAI 408



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    ++F  M  R + +++ M+ GYA  G    A+  FR +      PD  +  T+L
Sbjct: 121 GRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSYNTLL 176

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            A   LG       V +  ++  V  SV   N +I   A  G V  A   F     +  V
Sbjct: 177 HA---LGVSSSLADVRALFDEMPVKDSVSY-NVMISSHANHGLVSLARHYFDLAPEKDAV 232

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW  ++A    +GR  EA  LF+   E     D +++  L++       +++ ++ F+ M
Sbjct: 233 SWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALMAGYVQRSQIEEAQKMFNKM 288

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                    +  +  MV    R G + EA       PI  +   W  ++S     G L+ 
Sbjct: 289 PQR-----DVVSWNTMVSGYARRGDMAEARRLFDVAPIR-DVFTWTAIVSGYAQNGMLEE 342

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
           A+ +       + M + N V  + + A  ++     + +E+ D
Sbjct: 343 AKRVF------DAMPDKNAVSWNAMMAAYVQRRMMEEAKELFD 379



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 31/183 (16%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N  I    + G V  A +LF +M  R+  ++ +++AG A +GR  +A++ F  +      
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR---- 166

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMK--------------NDFGIIPKIEHY---- 252
           PD  ++  LL A      +   R  FD M                + G++    HY    
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 226

Query: 253 --------GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                     M+    R+GR++EA E       E + I W  L++    R +++ A+ + 
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEARELFDSR-TEWDAISWNALMAGYVQRSQIEEAQKMF 285

Query: 305 KRL 307
            ++
Sbjct: 286 NKM 288


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/477 (41%), Positives = 296/477 (62%), Gaps = 11/477 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E GVS +  T   ++  C     L LG+S+HG  +K     ++ V N+ + MY  C G
Sbjct: 147 MKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC-G 205

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E GR++FDEM  +  ++W+A+I GY++ GL+ D ++L+ QM+ SGVCPD  T+V+VLS
Sbjct: 206 SVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLS 265

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C  LGA ++G  V   +E      +V + NA I M+A+CG++ KA  +F  M  +++VS
Sbjct: 266 SCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS 325

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I    MHG G   + LF++M++ G+ PD   FV +LSACSH GL DKG E F +MK
Sbjct: 326 WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P  EHY C+VD+L R+GR+ EA EFI+ MP+E +  +W  L+ AC     + +A
Sbjct: 386 REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMA 445

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    ++I  EP +   YVL+S+IY+     E   +IR +M +R  +K PG + +E    
Sbjct: 446 ELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGR 505

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRK-MKKAGYVPTTSEVLLDINE-EDKEDALNKHSE 418
           ++ F+ GD+SH Q++E++ MLDE+    M+ AG         +D +  E+      +HSE
Sbjct: 506 VHLFLAGDRSHEQTEEVHRMLDELETSVMELAGN--------MDCDRGEEVSSTTREHSE 557

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LAIAF +L + PGT I ++KNLRVC DCH   K +SKI +R+ VVRD  RFH+FKD
Sbjct: 558 RLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKD 614



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 155/290 (53%), Gaps = 5/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G SP+ F++PF+LK+CA +     G+ +H  V K     +  V   L+ MY  C G
Sbjct: 44  MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKC-G 102

Query: 61  GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +   RKVF+E   S + SV ++A+I GY      TDA  +FR+M+ +GV  D +TM+ +
Sbjct: 103 LVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGL 162

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +  CT    L +G+ +     K  ++  V + N+ I M+ KCG V+   +LF  M  + +
Sbjct: 163 VPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGL 222

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           ++W +VI+G + +G   + + L+E+M  +GV PD    V +LS+C+H G    G E    
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           ++++ G +P +      + M  R G + +A      MP+++  + W  +I
Sbjct: 283 VESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKS-LVSWTAMI 330



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           S  W+  +   A   L +++I L+R M  SG  PD  +   +L +C  L     G+ +  
Sbjct: 18  STPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 77

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF--RSMNGRTIVSWTSVIAGLAMHGRG 194
            + K        +  ALI M+ KCG V  A K+F     + +  V + ++I+G   + + 
Sbjct: 78  HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
            +A  +F  M E GV  D V  +GL+  C+    +  GR          G+  ++     
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG-GLDSEVAVLNS 196

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            + M  + G V+       +MP++   I W  +IS     G
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKG-LITWNAVISGYSQNG 236


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 303/475 (63%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E    P++++   VL+ CA +G L  G+ VH  V+K  F  ++ V  +L HMY    G
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKA-G 250

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G +V + M +   V+W+ ++ G A+ G     +D +  M+++G  PD+IT V+V+S
Sbjct: 251 SMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVIS 310

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C++L  L  GK + +   K   +  V + ++L+ M+++CG +  ++K F     R +V 
Sbjct: 311 SCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVL 370

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+S+IA    HG+G EA+ LF EM +  +P +++ F+ LL ACSHCGL DKG   FD M 
Sbjct: 371 WSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMV 430

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+  +++HY C+VD+L RSG ++EA   I+ MP++A+ IIW+TL+SAC      ++A
Sbjct: 431 KKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIA 490

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
             +   ++  +P   ++YVLL++IY+   RW+  +++R  M  + +KK PG + +E+ N+
Sbjct: 491 RRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQ 550

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F  GD+ H +  EI + L+E+  ++K+ GYVP TS VL D++ E+KE  L  HSEKL
Sbjct: 551 VHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKL 610

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFAL+ TP G PIR++KNLRVC+DCH A K+IS+I   EI+VRD  RFHHFK+
Sbjct: 611 AIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKN 665



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 30/252 (11%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---------------- 56
           +  +L+AC  +  ++LGK +H  +       D  + N L+++Y                 
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 57  -----SCE---------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
                SC          G +E  + +FDEM +R+  +W+AM+ G  +  ++ +A+ LF +
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 103 MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
           M      PDE ++ +VL  C  LGAL  G+ V +++ K     ++ +  +L  M+ K G 
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGS 251

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           +    ++   M   ++V+W ++++G A  G     +  +  M  AG  PD + FV ++S+
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISS 311

Query: 223 CSHCGLVDKGRE 234
           CS   ++ +G++
Sbjct: 312 CSELAILCQGKQ 323



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 37/212 (17%)

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +L AC  L ++ +GK + S I     +    + N L+++++K G++  A+ LF  M  R
Sbjct: 74  NLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRR 133

Query: 177 TIVS-------------------------------WTSVIAGLAMHGRGLEAVALFEEML 205
            I+S                               W +++ GL       EA+ LF  M 
Sbjct: 134 NIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMN 193

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSG 263
           E    PD+ +   +L  C+H G +  G++ +   MK  F     +   GC +  M  ++G
Sbjct: 194 ELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVV---GCSLAHMYMKAG 250

Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            + +    I  MP + + + W TL+S    +G
Sbjct: 251 SMHDGERVINWMP-DCSLVAWNTLMSGKAQKG 281


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/431 (42%), Positives = 270/431 (62%), Gaps = 1/431 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G +E  + VFD M ++D+VSW+AM+  Y++ G S + + LF +M
Sbjct: 316 NVASWNTMLTGYAQA-GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              G   +      VLS C D+ ALE G  +   + +        + NAL+ M+ KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A   F  M  R +VSW ++IAG A HG G EA+ +F+ M      PDD+  VG+L+AC
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLV+KG  YF SM +DFG+  K EHY CM+D+L R+GR+ EAH+ ++ MP E +  +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A       +L  S  +++   EP +   YVLLS+IYA   +W    K+R +M++
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + IE+ N+++ F  GD  H + ++IY  L+++  +MKKAGYV  T  VL D
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+A+ +L  PPG PIR++KNLRVC DCH+A K+IS I  R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 464 VRDRHRFHHFK 474
           +RD +RFHHF+
Sbjct: 735 LRDSNRFHHFR 745



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+  +  VL  CA I  L  G  +HG +++  +G    V N L+ MY  C G +E  R  
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GNMEDARNA 440

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+EM ERD VSW+ MI GYAR G   +A+++F  M+ +   PD+IT+V VL+AC+  G +
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           E G  +  S      V         +ID+  + G + +A  L + M
Sbjct: 501 EKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 131/283 (46%), Gaps = 23/283 (8%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ ++Y  +L A A    L       G   +    D +   N ++  + +  G + L R 
Sbjct: 98  PDNYSYNTLLHALAVSSSL---ADARGLFDEMPVRDSV-TYNVMISSHAN-HGLVSLARH 152

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
            FD   E+D+VSW+ M+  Y R G   +A  LF     S    D I+   ++S     G 
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGK 208

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +   +  E F   +M  R V   N ++  +A+ GD+ +A +LF +   R + +WT+V++G
Sbjct: 209 MSEAR--ELF--DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A +G   EA  +F+ M E     + V++  +++A     ++D+ +E F+ M        
Sbjct: 265 YAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMP-----CR 315

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +  +  M+    ++G ++EA      MP + + + W  +++A
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 74/303 (24%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYA---RLGLS----------------------- 93
           G +    ++F  M  R + +++AM+ GY+   RL L+                       
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 94  -----TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK-------------W-- 133
                 DA  LF +M +     D +T   ++S+  + G + + +             W  
Sbjct: 112 VSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167

Query: 134 -VESFIEKQMVNRSVGL-----------CNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            + +++    V  + GL            NAL+  + + G + +A +LF  M GR +VSW
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMK 240
             +++G A  G  +EA  LF+       P  DV  +  ++S  +  G++++ R  FD+M 
Sbjct: 228 NIMVSGYARRGDMVEARRLFD-----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               +      +  MV    +   + EA E    MP   N   W T+++     G L+ A
Sbjct: 283 ERNAV-----SWNAMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGMLEEA 336

Query: 301 ESI 303
           +++
Sbjct: 337 KAV 339



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
           M  RS    NA++  ++  G +  A  LFR++      S+ +++  LA+     +A  LF
Sbjct: 64  MPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLF 123

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE--HYGCMVDML 259
           +EM       D V +  ++S+ ++ GLV   R YFD       + P+ +   +  M+   
Sbjct: 124 DEM----PVRDSVTYNVMISSHANHGLVSLARHYFD-------LAPEKDAVSWNGMLAAY 172

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
            R+GRV+EA         E + I W  L+S     G++  A  +  R+ G +
Sbjct: 173 VRNGRVEEARGLFNSR-TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRD 223



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 23/209 (11%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N  I    + G V  A +LF +M  R+  ++ +++AG + +GR   A +LF       +P
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR-----AIP 96

Query: 211 -PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+ ++  LL A +    +   R  FD M     +      Y  M+      G V  A 
Sbjct: 97  RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLAR 151

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
            +    P E + + W  +++A    G ++ A  +           E + +  + + +  +
Sbjct: 152 HYFDLAP-EKDAVSWNGMLAAYVRNGRVEEARGLFNSRT------EWDVISWNALMSGYV 204

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           +W K ++ RE+ D     ++PG  ++  +
Sbjct: 205 QWGKMSEARELFD-----RMPGRDVVSWN 228


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/472 (39%), Positives = 291/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN +T+  VL ACA +GDL  G++VH  +L   +   +     LV +Y S  G ++ 
Sbjct: 316 GVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY-GSLDE 374

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACT 123
            R +FD++  RD   W+ +IGGY++ G  T  ++L+R+M+ +   P  +I    V+SAC 
Sbjct: 375 ARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 434

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGA    +   S IE   +     L  +L++M+++ G+++ A ++F  M+ R  ++WT+
Sbjct: 435 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTT 494

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +IAG A HG    A+ L++EM   G  P ++ F+ +L ACSH GL ++G++ F S+++D+
Sbjct: 495 LIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDY 554

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            + P I HY C++D+L R+GR+ +A E I  MP+E N + W +L+ A     ++K A   
Sbjct: 555 AMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHA 614

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             ++   +P+  ++YVLLS+++A          +R  M  RG+KK  GS+ IE+ ++I+E
Sbjct: 615 AGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHE 674

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD SH + +EI+  L  +  K+K+AGYVP + EVL D+ E++KE  L  HSEKLAIA
Sbjct: 675 FNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIA 734

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ T PGT +RI   LR+C+DCHSA KFIS I  REI+VRD  RFH F+D
Sbjct: 735 FGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRD 786



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 180/390 (46%), Gaps = 50/390 (12%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAV-----LKFQFGDDIHVQNTLVHMYGSCEG 60
           + PN   Y  VL ACA I  L  GK++H  +     LK     D+ ++N+L+ MY  C G
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKL----DVILENSLLTMYAKC-G 171

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  +++F+ MS R   SW+AMI  YA+ G   +AI L+  M +    P   T  +VLS
Sbjct: 172 SLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVLS 228

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC++LG L+ G+ + + I  +     + L NAL+ M+A+C  +D A K+F+ +  R +VS
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD--- 237
           W+++IA  A      EA+  + +M   GV P+   F  +L AC+  G +  GR   D   
Sbjct: 289 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348

Query: 238 ------SMKNDFGIIPKIEHYGCMVDMLC-------------------------RSGRVK 266
                 ++ N   ++     YG + +                            R+G ++
Sbjct: 349 GNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLE 408

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
              E      + A  II+  +ISAC + G    A      +  +  +  S++VL + +  
Sbjct: 409 LYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI--SDFVLATSLVN 466

Query: 327 KLLRWEKKTKIREVMDKRGMK-KIPGSTLI 355
              RW      R+V DK   +  +  +TLI
Sbjct: 467 MYSRWGNLESARQVFDKMSSRDTLAWTTLI 496



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 41/301 (13%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++ + N +V  YG C G +   R  FD ++ ++  SW +M+  YA+ G    A+DL+++M
Sbjct: 57  NVFLGNEIVRAYGKC-GSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE-KQMVNRSVGLCNALIDMFAKCGD 162
            +    P+ +   TVL AC  + ALE GK + S I   + +   V L N+L+ M+AKCG 
Sbjct: 116 DLQ---PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           ++ A +LF  M+GR++ SW ++IA  A  G   EA+ L+E+M    V P    F  +LSA
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSA 229

Query: 223 CSHCGLVDKGREY----------------------------FDSMKNDFGIIPK--IEHY 252
           CS+ GL+D+GR+                              D     F  +P+  +  +
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITKRLIG 309
             M+     +    EA EF  KM +E    N   + +++ AC + G+L+   ++  +++G
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 310 N 310
           N
Sbjct: 350 N 350



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 15/138 (10%)

Query: 216 FVG--LLSACSHCGLVDKGREYFDSM--KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           F+G  ++ A   CG V   R  FD++  KND+        +G M+    ++G  + A + 
Sbjct: 59  FLGNEIVRAYGKCGSVASARAAFDAIARKNDYS-------WGSMLTAYAQNGHYRAALDL 111

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL---LSHIYAKL 328
            ++M ++ NP+++ T++ AC +   L+  ++I  R+ G + + + + +L   L  +YAK 
Sbjct: 112 YKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGL-KLDVILENSLLTMYAKC 170

Query: 329 LRWEKKTKIREVMDKRGM 346
              E   ++ E M  R +
Sbjct: 171 GSLEDAKRLFERMSGRSV 188


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/472 (39%), Positives = 291/472 (61%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN +T+  VL ACA +GDL  G++VH  +L   +   +     LV +Y S  G ++ 
Sbjct: 317 GVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY-GSLDE 375

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACT 123
            R +FD++  RD   W+ +IGGY++ G  T  ++L+R+M+ +   P  +I    V+SAC 
Sbjct: 376 ARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 435

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            LGA    +   S IE   +     L  +L++M+++ G+++ A ++F  M+ R  ++WT+
Sbjct: 436 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTT 495

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +IAG A HG    A+ L++EM   G  P ++ F+ +L ACSH GL ++G++ F S+++D+
Sbjct: 496 LIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDY 555

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            + P I HY C++D+L R+GR+ +A E I  MP+E N + W +L+ A     ++K A   
Sbjct: 556 AMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHA 615

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             ++   +P+  ++YVLLS+++A          +R  M  RG+KK  GS+ IE+ ++I+E
Sbjct: 616 AGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHE 675

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD SH + +EI+  L  +  K+K+AGYVP + EVL D+ E++KE  L  HSEKLAIA
Sbjct: 676 FNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIA 735

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           F L+ T PGT +RI   LR+C+DCHSA KFIS I  REI+VRD  RFH F+D
Sbjct: 736 FGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRD 787



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 182/391 (46%), Gaps = 51/391 (13%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAV-----LKFQFGDDIHVQNTLVHMYGSCEG 60
           + PN   Y  VL ACA I  L  GK++H  +     LK     D+ ++N+L+ MY  C G
Sbjct: 117 LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKL----DVILENSLLTMYAKC-G 171

Query: 61  GIELGRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +E  +++F+ MS R SVS W+AMI  YA+ G   +AI L+  M +    P   T  +VL
Sbjct: 172 SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVL 228

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC++LG L+ G+ + + I  +     + L NAL+ M+A+C  +D A K+F+ +  R +V
Sbjct: 229 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 288

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-- 237
           SW+++IA  A      EA+  + +M   GV P+   F  +L AC+  G +  GR   D  
Sbjct: 289 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 348

Query: 238 -------SMKNDFGIIPKIEHYGCMVDMLC-------------------------RSGRV 265
                  ++ N   ++     YG + +                            R+G +
Sbjct: 349 LGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVL 408

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
           +   E      + A  II+  +ISAC + G    A      +  +  +  S++VL + + 
Sbjct: 409 ELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI--SDFVLATSLV 466

Query: 326 AKLLRWEKKTKIREVMDKRGMK-KIPGSTLI 355
               RW      R+V DK   +  +  +TLI
Sbjct: 467 NMYSRWGNLESARQVFDKMSSRDTLAWTTLI 497



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 42/302 (13%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++ + N +V  YG C G +   R  FD ++ ++  SW +M+  YA+ G    A+DL+++M
Sbjct: 57  NVFLGNEIVRAYGKC-GSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE-KQMVNRSVGLCNALIDMFAKCGD 162
            +    P+ +   TVL AC  + ALE GK + S I   + +   V L N+L+ M+AKCG 
Sbjct: 116 DLQ---PNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 163 VDKALKLFRSMNGR-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           ++ A +LF  M+GR ++ SW ++IA  A  G   EA+ L+E+M    V P    F  +LS
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLS 229

Query: 222 ACSHCGLVDKGREY----------------------------FDSMKNDFGIIPK--IEH 251
           ACS+ GL+D+GR+                              D     F  +P+  +  
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITKRLI 308
           +  M+     +    EA EF  KM +E    N   + +++ AC + G+L+   ++  +++
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 349

Query: 309 GN 310
           GN
Sbjct: 350 GN 351



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 216 FVG--LLSACSHCGLVDKGREYFDSM--KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           F+G  ++ A   CG V   R  FD++  KND+        +G M+    ++G  + A + 
Sbjct: 59  FLGNEIVRAYGKCGSVASARVAFDAIARKNDYS-------WGSMLTAYAQNGHYRAALDL 111

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL---LSHIYAKL 328
            ++M ++ NP+++ T++ AC +   L+  ++I  R+ G + + + + +L   L  +YAK 
Sbjct: 112 YKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGL-KLDVILENSLLTMYAKC 170

Query: 329 LRWEKKTKIREVMDKR 344
              E   ++ E M  R
Sbjct: 171 GSLEDAKRLFERMSGR 186


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/431 (42%), Positives = 270/431 (62%), Gaps = 1/431 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G +E  + VFD M ++D+VSW+AM+  Y++ G S + + LF +M
Sbjct: 316 NVASWNTMLTGYAQA-GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              G   +      VLS C D+ ALE G  +   + +        + NAL+ M+ KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A   F  M  R +VSW ++IAG A HG G EA+ +F+ M      PDD+  VG+L+AC
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLV+KG  YF SM +DFG+  K EHY CM+D+L R+GR+ EAH+ ++ MP E +  +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A       +L  S  +++   EP +   YVLLS+IYA   +W    K+R +M++
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + IE+ N+++ F  GD  H + ++IY  L+++  +MKKAGYV  T  VL D
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+A+ +L  PPG PIR++KNLRVC DCH+A K+IS I  R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 464 VRDRHRFHHFK 474
           +RD +RFHHF+
Sbjct: 735 LRDSNRFHHFR 745



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+  +  VL  CA I  L  G  +HG +++  +G    V N L+ MY  C G +E  R  
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GNMEDARNA 440

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+EM ERD VSW+ MI GYAR G   +A+++F  M+ +   PD+IT+V VL+AC+  G +
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           E G  +  S      V         +ID+  + G + +A  L + M
Sbjct: 501 EKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 131/283 (46%), Gaps = 23/283 (8%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ ++Y  +L A A    L       G   +    D +   N ++  + +  G + L R 
Sbjct: 98  PDNYSYNTLLHALAVSSSL---ADARGLFDEMPVRDSV-TYNVMISSHAN-HGLVSLARH 152

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
            FD   E+D+VSW+ M+  Y R G   +A  LF     S    D I+   ++S     G 
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDAISWNALMSGYVQWGK 208

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +   +  E F   +M  R V   N ++  +A+ GD+ +A +LF +   R + +WT+V++G
Sbjct: 209 MSEAR--ELF--DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
            A +G   EA  +F+ M E     + V++  +++A     ++D+ +E F+ M        
Sbjct: 265 YAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMP-----CR 315

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +  +  M+    ++G ++EA      MP + + + W  +++A
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 74/303 (24%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYA---RLGLS----------------------- 93
           G +    ++F  M  R + +++AM+ GY+   RL L+                       
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 94  -----TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK-------------W-- 133
                 DA  LF +M +     D +T   ++S+  + G + + +             W  
Sbjct: 112 VSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167

Query: 134 -VESFIEKQMVNRSVGL-----------CNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            + +++    V  + GL            NAL+  + + G + +A +LF  M GR +VSW
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMK 240
             +++G A  G  +EA  LF+       P  DV  +  ++S  +  G++++ R  FD+M 
Sbjct: 228 NIMVSGYARRGDMVEARRLFD-----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               +      +  MV    +   + EA E    MP   N   W T+++     G L+ A
Sbjct: 283 ERNAV-----SWNAMVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTGYAQAGMLEEA 336

Query: 301 ESI 303
           +++
Sbjct: 337 KAV 339



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
           M  RS    NA++  ++  G +  A  LFR++      S+ +++  LA+     +A  LF
Sbjct: 64  MPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLF 123

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE--HYGCMVDML 259
           +EM       D V +  ++S+ ++ GLV   R YFD       + P+ +   +  M+   
Sbjct: 124 DEM----PVRDSVTYNVMISSHANHGLVSLARHYFD-------LAPEKDAVSWNGMLAAY 172

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
            R+GRV+EA         E + I W  L+S     G++  A  +  R+ G +
Sbjct: 173 VRNGRVEEARGLFNSR-TEWDAISWNALMSGYVQWGKMSEARELFDRMPGRD 223



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 23/209 (11%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N  I    + G V  A +LF +M  R+  ++ +++AG + +GR   A +LF       +P
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR-----AIP 96

Query: 211 -PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            PD+ ++  LL A +    +   R  FD M     +      Y  M+      G V  A 
Sbjct: 97  RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGLVSLAR 151

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
            +    P E + + W  +++A    G ++ A  +           E + +  + + +  +
Sbjct: 152 HYFDLAP-EKDAVSWNGMLAAYVRNGRVEEARGLFNSRT------EWDAISWNALMSGYV 204

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           +W K ++ RE+ D     ++PG  ++  +
Sbjct: 205 QWGKMSEARELFD-----RMPGRDVVSWN 228


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/473 (39%), Positives = 293/473 (61%), Gaps = 2/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    PN FT+  +LKA     D   G+ +H   +K  + +D++V + L+ MY  C G
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARC-G 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD++  ++ VSW+A+I G+AR G    A+  F +M  +G      T  +V S
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFS 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +   LGALE GKWV + + K     +  + N L+DM+AK G +  A K+F  ++ + +V+
Sbjct: 262 SIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVT 321

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S++   A +G G EAV+ FEEM ++GV  + + F+ +L+ACSH GLV +G+ YF+ MK
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P+I+HY  +V +L R+G +  A  FI KMP+E    +W  L++AC      K+ 
Sbjct: 382 -EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVG 440

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W+   ++R +M   G+KK P  + +E++N 
Sbjct: 441 QFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENS 500

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H Q++EIY+M  E+ +K++K GYVP    VLL +++++KE  L  HSEKL
Sbjct: 501 VHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKL 560

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AFAL++ P G  IRI+KN+R+C DCHSA K+ISK++ REIVVRD +RFHHF
Sbjct: 561 ALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHF 613



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y   + ACA   +L   + +H  +   +F  D  + N+L+HMY  C   ++  
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD-A 105

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VFD+M  +D VSW+++I GYA+  +  +AI L   M      P+  T  ++L A    
Sbjct: 106 RNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                G+ + +   K   +  V + +AL+DM+A+CG +D A  +F  ++ +  VSW ++I
Sbjct: 166 ADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           +G A  G G  A+  F EML  G       +  + S+ +  G +++G+  +   +K+   
Sbjct: 226 SGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQK 285

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +   + +   ++DM  +SG + +A +   ++    + + W ++++A    G  K A S
Sbjct: 286 LTAFVGN--TLLDMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLTAFAQYGLGKEAVS 340


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/477 (40%), Positives = 290/477 (60%), Gaps = 6/477 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--QFGDDIHVQNTLVHMYGSC 58
           M +  V P+      V+ A   + DL  GKS+HG V K   +F  DI +  +L  MY   
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAK- 248

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +E+ R  F+ M + + + W+AMI GYA  G   +AI LFR+M    +  D ITM + 
Sbjct: 249 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 308

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + A   +G+LE+ +W++ +I K        +   LIDM+AKCG +  A  +F  +  + +
Sbjct: 309 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 368

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W+ +I G  +HG G EA+ L+ EM +AGV P+D  F+GLL+AC + GLV +G E F  
Sbjct: 369 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 428

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D GI P  +HY C+VD+L R+G + +A++FI  MPI+    +W  L+SAC    +++
Sbjct: 429 MP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 487

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E   ++L   +P +  +YV LS++YA    W +   +R +M ++G+ K  G + IE++
Sbjct: 488 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             +  F  GD+SH +SKEI+E LD + +++K AGYVP    VL D+N E+ E+ L  HSE
Sbjct: 548 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSE 607

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LA+A+ ++ T PGT +RI KNLR C +CHSA K ISK+ +REI++RD  RFHHFKD
Sbjct: 608 RLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKD 664



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 25/311 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN FT+ +VLKAC G     +GK +HG   K+ FG ++ VQN+LV MY    G I   
Sbjct: 96  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKF-GQISYA 154

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VFD++ +R  VSW+++I GY + G   +A+++F++M+   V PD I +V+V++A T++
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  GK +   + K  +     +  +L  M+AK G V+ A   F  M    ++ W ++I
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A +G G EA+ LF EM+   +  D +     + A +  G ++  R + D      G 
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLD------GY 327

Query: 246 IPKIEHY------GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI----------S 289
           I K E+         ++DM  + G +  A     ++  + + ++W  +I           
Sbjct: 328 ISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA-DKDVVLWSVMIMGYGLHGHGQE 386

Query: 290 ACCARGELKLA 300
           A C   E+K A
Sbjct: 387 AICLYNEMKQA 397



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 2/249 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    K F E+SE D + W+A+I GY +  +    I ++  MQIS V P+  T + VL
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC       +GK +     K     +V + N+L+ M+AK G +  A  +F  ++ RT+V
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+I+G   +G  +EA+ +F+EM +  V PD +A V +++A ++   + +G+     +
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHGL 226

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+  + +    +  M  + G V+ A  F  +M  + N I+W  +IS     G  + 
Sbjct: 227 VTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYANNGYGEE 285

Query: 300 AESITKRLI 308
           A  + + +I
Sbjct: 286 AIKLFREMI 294


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 286/475 (60%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  +L     +        +H  V+K  +     V   L+  +    G
Sbjct: 397 MRREGVKPNHFTYSTILTVQHAV----FISEIHAEVIKTNYEKSSSVGTALLDAFVKI-G 451

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    KVF+ +  +D ++WSAM+ GYA+ G + +A  +F Q+   G+ P+E T  ++++
Sbjct: 452 NISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIIN 511

Query: 121 ACT-DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           ACT    ++E GK   ++  K  +N ++ + ++L+ ++AK G+++ A ++F+    R +V
Sbjct: 512 ACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLV 571

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG+  +A+ +FEEM +  +  D + F+G++SAC+H GLV KG+ YF+ M
Sbjct: 572 SWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIM 631

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            ND  I P +EHY CM+D+  R+G + +A + I  MP      +WR +++A      ++L
Sbjct: 632 INDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIEL 691

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   +++I  EP H + YVLLS+IYA    W +K  +R++MDKR +KK PG + IE+ N
Sbjct: 692 GKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKN 751

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F+ GD SH  S  IY  L E+  +++  GY P T+ V  DI +E KE  L+ HSE+
Sbjct: 752 KTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSER 811

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF L+ T P  P++IVKNLRVC DCHS  K +S +  R IVVRD +RFHHFK
Sbjct: 812 LAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFK 866



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 171/356 (48%), Gaps = 36/356 (10%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+SP+ +T   VL  CAG  +  +G+ VH   +K      + V N+LV MY    G +  
Sbjct: 97  GLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKT-GNVRD 155

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR+VFDEM +RD VSW++++ GY+    +    +LF  MQ+ G  PD  T+ TV++A  +
Sbjct: 156 GRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALAN 215

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            GA+ +G  + + + K        +CN+LI M +K G +  A  +F +M  +  VSW S+
Sbjct: 216 QGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSM 275

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGR 233
           IAG  ++G+ LEA   F  M  AG  P    F  ++ +C+           HC  +  G 
Sbjct: 276 IAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSG- 334

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
                +  +  ++  +     MV  L +   + +A      M    + + W  +IS    
Sbjct: 335 -----LSTNQNVLTAL-----MV-ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQ 383

Query: 294 RGELKLAESITK--RLIGNEPMHES--------NYVLLSHIYAKLLR--WEKKTKI 337
            G+   A ++    R  G +P H +        + V +S I+A++++  +EK + +
Sbjct: 384 NGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSV 439



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 121/257 (47%), Gaps = 8/257 (3%)

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             +++FD+   RD    + ++  Y+R   + +A+ LF  +  SG+ PD  TM  VLS C 
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
                 VG+ V     K  +   + + N+L+DM+ K G+V    ++F  M  R +VSW S
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           ++ G + +    +   LF  M   G  PD      +++A ++ G V  G +   ++    
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVKL 232

Query: 244 GIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-LKLA 300
           G   + E   C  ++ ML +SG +++A      M    + + W ++I+     G+ L+  
Sbjct: 233 GF--ETERLVCNSLISMLSKSGMLRDARVVFDNME-NKDSVSWNSMIAGHVINGQDLEAF 289

Query: 301 ESITK-RLIGNEPMHES 316
           E+    +L G +P H +
Sbjct: 290 ETFNNMQLAGAKPTHAT 306


>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
          Length = 625

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/475 (38%), Positives = 291/475 (61%), Gaps = 3/475 (0%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           LE GVSP+ +T+PFVLKACA +  L  G+ +   ++K  F  D HVQN+L+  YG C G 
Sbjct: 142 LEAGVSPDSYTFPFVLKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKC-GA 200

Query: 62  IELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             + R  FD  E  ER +VSWSA++  Y + GL  + +  F  M + G  PDE +MV+ L
Sbjct: 201 PAMARLAFDRVEAEERTTVSWSALLAAYTKAGLWGECLASFGSMMLDGWRPDESSMVSAL 260

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  LG+ + G+ V   + +     +  +  +L+DM+AKCG ++KA   F +M+ ++  
Sbjct: 261 SACAHLGSFDAGRSVHCALLRNTARLNTIMLTSLLDMYAKCGSIEKAAAAFDAMDDKSAW 320

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +++++++GLA+HG G +A+ +F+ M+  G  PD  A+VG+L+ACS  GL++ G   FD M
Sbjct: 321 AYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRM 380

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           + +  + P   HYGCMVD++ R+GR+ +A   I  MP       WR+L++AC   G+L L
Sbjct: 381 RLEHKVAPNALHYGCMVDLMARAGRLDDARALIGTMPTGPTDTAWRSLLNACRIHGDLDL 440

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A    + L      +  +YV+++ ++A+   W     +R      G+ +  G + +E+  
Sbjct: 441 AWHALQELRRLGAANAGDYVIVADMHARAKNWTAAAALRTEAVDSGLAQSLGFSAVEVRG 500

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           E++ FV  D +H ++++IYEML +M  +++  GY P TSEV LD  EE+K   +  HS+K
Sbjct: 501 ELHRFVSQDMAHPRTRDIYEMLHQMEWQLRFDGYKPDTSEVALDAGEEEKGRVVAAHSQK 560

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AF LL TP G P+R+V NLR+  +CH+ +  IS+I+ R+IV+RDR+R H F+
Sbjct: 561 LAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGRDIVIRDRNRLHRFR 615



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 7/214 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS----TDAIDLFRQMQISGVCPDEITM 115
           GG+EL   +F+ + E ++  ++ ++ G+   G        A+ L+     +GV PD  T 
Sbjct: 94  GGMELAASIFESLVEPEAFDYNTLMRGHVSGGGGDRDPAAALRLYIDGLEAGVSPDSYTF 153

Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
             VL AC  L AL+ G+ +++ I K        + N+LI  + KCG    A   F  +  
Sbjct: 154 PFVLKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEA 213

Query: 176 --RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             RT VSW++++A     G   E +A F  M+  G  PD+ + V  LSAC+H G  D GR
Sbjct: 214 EERTTVSWSALLAAYTKAGLWGECLASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGR 273

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
               ++  +   +  I     ++DM  + G +++
Sbjct: 274 SVHCALLRNTARLNTI-MLTSLLDMYAKCGSIEK 306



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  P++ +    L ACA +G  + G+SVH A+L+     +  +  +L+ MY  C G
Sbjct: 244 MMLDGWRPDESSMVSALSACAHLGSFDAGRSVHCALLRNTARLNTIMLTSLLDMYAKC-G 302

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     FD M ++ + ++SAM+ G A  G    A+ +F  M   G  PD    V VL+
Sbjct: 303 SIEKAAAAFDAMDDKSAWAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLN 362

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTI 178
           AC+  G LE G +  +    +  V  +      ++D+ A+ G +D A  L  +M  G T 
Sbjct: 363 ACSRAGLLEDGLRCFDRMRLEHKVAPNALHYGCMVDLMARAGRLDDARALIGTMPTGPTD 422

Query: 179 VSWTSVIAGLAMHG 192
            +W S++    +HG
Sbjct: 423 TAWRSLLNACRIHG 436


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/416 (44%), Positives = 269/416 (64%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++  R+VFD M  R+ VSW++MI GY +     DA+++F +M+  GV  +     + L
Sbjct: 178 GLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSAL 237

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            ACT  GAL  G+ +  ++E+  +     L  A++DM+ KCG VD+A  +F S+  R + 
Sbjct: 238 VACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLT 297

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W  +I G A+HGR  +A+ LF +M  AGV PDDV  + +L+AC+H G V +GR Y + +
Sbjct: 298 TWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHI 357

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
            +  GI PK EHYGCMVD+  R+G++ EA + I +MP++ +  +   L+ AC   G++ L
Sbjct: 358 VSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDL 417

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E+I  R+I  +P +   YVLL+++ A   RW++  K+R +MD+R + K  G ++IE+D 
Sbjct: 418 GEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDG 477

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           E  EF CG+  H Q++EIY M  +M  +++  GYVP T E L D+ EEDKE AL  HSEK
Sbjct: 478 EACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEK 537

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF LL+  P   +RI KNLRVC DCH ATK++S+++ REIVVRDR RFHHFKD
Sbjct: 538 LAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKD 593


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/431 (42%), Positives = 270/431 (62%), Gaps = 1/431 (0%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++   NT++  Y    G +E  + VFD M ++D+VSW+AM+  Y++ G S + + LF +M
Sbjct: 191 NVASWNTMLTGYAQA-GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 249

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              G   +      VLS C D+ ALE G  +   + +        + NAL+ M+ KCG++
Sbjct: 250 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 309

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A   F  M  R +VSW ++IAG A HG G EA+ +F+ M      PDD+  VG+L+AC
Sbjct: 310 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLV+KG  YF SM +DFG+  K EHY CM+D+L R+GR+ EAH+ ++ MP E +  +
Sbjct: 370 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 429

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ A       +L  S  +++   EP +   YVLLS+IYA   +W    K+R +M++
Sbjct: 430 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 489

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+KK+PG + IE+ N+++ F  GD  H + ++IY  L+++  +MKKAGYV  T  VL D
Sbjct: 490 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 549

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           + EE+KE  L  HSEKLA+A+ +L  PPG PIR++KNLRVC DCH+A K+IS I  R I+
Sbjct: 550 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 609

Query: 464 VRDRHRFHHFK 474
           +RD +RFHHF+
Sbjct: 610 LRDSNRFHHFR 620



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+  +  VL  CA I  L  G  +HG +++  +G    V N L+ MY  C G +E  R  
Sbjct: 257 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GNMEDARNA 315

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+EM ERD VSW+ MI GYAR G   +A+++F  M+ +   PD+IT+V VL+AC+  G +
Sbjct: 316 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 375

Query: 129 EVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           E G  +  S      V         +ID+  + G + +A  L + M
Sbjct: 376 EKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 421



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 18/231 (7%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L R  FD   E+D+VSW+ M+  Y R G   +A  LF     S    D I+   ++
Sbjct: 20  GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALM 75

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S     G +   +  E F   +M  R V   N ++  +A+ GD+ +A +LF +   R + 
Sbjct: 76  SGYVQWGKMSEAR--ELF--DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +WT+V++G A +G   EA  +F+ M E     + V++  +++A     ++D+ +E F+ M
Sbjct: 132 TWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMM 187

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                    +  +  M+    ++G ++EA      MP + + + W  +++A
Sbjct: 188 P-----CRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 232



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N +I   A  G V  A   F     +  VSW  ++A    +GR  EA  LF    E    
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--- 66

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
            D +++  L+S     G + + RE FD M         +  +  MV    R G + EA  
Sbjct: 67  -DVISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARR 120

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                P+  +   W  ++S     G L+ A  +
Sbjct: 121 LFDAAPVR-DVFTWTAVVSGYAQNGMLEEARRV 152


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/482 (40%), Positives = 293/482 (60%), Gaps = 13/482 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           ML   V P  F +   LKAC+ + +  +G+++H  ++K   G+ D  V N L+ +Y    
Sbjct: 166 MLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLY---- 221

Query: 60  GGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
             +E+G      KVF+EM +R+ VSW+ +I G+A  G   + +  FR MQ  G+    IT
Sbjct: 222 --VEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWIT 279

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           + T+L  C  + AL  GK +   I K   N  V L N+L+DM+AKCG++    K+F  M+
Sbjct: 280 LTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMH 339

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            + + SW +++AG +++G+  EA+ LF+EM+  G+ P+ + FV LLS CSH GL  +G+ 
Sbjct: 340 SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKR 399

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F ++  DFG+ P +EHY C+VD+L RSG+  EA    + +P+  +  IW +L+++C   
Sbjct: 400 LFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLY 459

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           G + LAE + +RL   EP +  NYV+LS+IYA    WE   ++RE+M   GMKK  G + 
Sbjct: 460 GNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSW 519

Query: 355 IELDNEIYEFVCGDKSHHQ-SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDAL 413
           I++ ++I+ FV G  S  + S E  ++ +E+   +K  GYVP T  VL DINEE K   +
Sbjct: 520 IQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEEMKAVWV 579

Query: 414 NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            +HSE+LA  FAL+ T  G PIRI KNLRVC DCHS  K +SK+  R IV+RD +RFHHF
Sbjct: 580 CEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHF 639

Query: 474 KD 475
           ++
Sbjct: 640 EN 641



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 28/347 (8%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQ--FGDDIHVQNTLVHMYGSCEGGIELGRKVF---DE 71
           L AC     L  G+ +H  +L+ Q    ++  ++  L+ +Y  C G +   R+VF   DE
Sbjct: 77  LHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVC-GRVNEARRVFQIDDE 135

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
               + V W AM  GY+R G S +A+ L+R M    V P        L AC+DL    VG
Sbjct: 136 KPPEEPV-WVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVG 194

Query: 132 KWVESFIEKQMVNRSVG-----LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           +     I  Q+V   VG     + NAL+ ++ + G  D+ LK+F  M  R +VSW ++IA
Sbjct: 195 R----AIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIA 250

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE----YFDSMKND 242
           G A  GR  E ++ F  M   G+    +    +L  C+    +  G+E       S KN 
Sbjct: 251 GFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKN- 309

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
                 +     ++DM  + G +    +   +M    +   W T+++     G++  A  
Sbjct: 310 ----ADVPLLNSLMDMYAKCGEIGYCEKVFDRMH-SKDLTSWNTMLAGFSINGQIHEALC 364

Query: 303 ITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347
           +   +I  G EP   +   LLS      L  E K     VM   G++
Sbjct: 365 LFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQ 411


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/507 (39%), Positives = 309/507 (60%), Gaps = 37/507 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM---YGS 57
           MLE G++P+  T+   + +C+ IGD  L  S+   + +     +  V+  L+ M   +G+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 58  CE----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
            E                            G + L R++FD M +RD VSW++MI GYA+
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 90  LGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            G S  +I+LF++M     + PDE+T+ +VLSAC  +GAL++  WV   + ++ +   + 
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
             N+LI M++KCG V  A ++F++M  R +VS+ ++I+G A +G G EA+ L   M E G
Sbjct: 429 GFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG 488

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD V ++G+L+ACSH GL+++G+  F S++      P ++HY CMVD+L R+G + EA
Sbjct: 489 IEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEA 543

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              IQ MP++ +  ++ +L++A      + L E    +L   EP +  NYVLLS+IYA  
Sbjct: 544 KMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASF 603

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            RWE   ++RE+M K G+KK  G + +E   ++++F  GD+SH QSK+IY++L E+ RKM
Sbjct: 604 GRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKM 663

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K+ G+V   S  L D+ EE+KE+ L  HSEKLAI FALL +  GT IR+VKNLR+C DCH
Sbjct: 664 KRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCH 723

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A K ISK+  REIVVRD +RFH F +
Sbjct: 724 TAIKMISKLEGREIVVRDNNRFHCFSE 750



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 37/290 (12%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  R+ FDEM ER  VSW+AM   YA+     +A++LF QM   G+ PD+ T V  +
Sbjct: 206 GDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTI 265

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD--------------- 164
           S+C+ +G   +   +   I+++ +  +  +  AL+DM AK G+++               
Sbjct: 266 SSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNA 325

Query: 165 -----------------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                             A +LF +M  R +VSW S+IAG A +G    ++ LF+EM+  
Sbjct: 326 VTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISC 385

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + PD+V    +LSAC H G +       D ++    I   I  +  ++ M  + G V 
Sbjct: 386 MDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIFMYSKCGSVA 444

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAES--ITKRLIGNEPMH 314
           +AH   Q M    + + + TLIS   A G  K A    +T    G EP H
Sbjct: 445 DAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 56/308 (18%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P  F Y +++K     G+L      H  VLK    DD  ++N ++ MY    G ++L R 
Sbjct: 98  PQPFVYIYLIKLAGKSGNL-----FHAYVLKLGHIDDHFIRNAILDMYAK-NGQVDLARN 151

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F++M+ER    W++MI G  + G  T+A+ LF  M                        
Sbjct: 152 LFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA---------------------- 189

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
                            R++    +++  +AK GD++ A + F  M  R++VSW ++ + 
Sbjct: 190 -----------------RNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---LVDKGREYFDSMKNDFG 244
            A      EA+ LF +MLE G+ PDD  +V  +S+CS  G   L D      D       
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLN 292

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
              K      ++DM  + G ++ A     ++  + N + W  +ISA    G+L LA    
Sbjct: 293 SFVKT----ALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA---- 344

Query: 305 KRLIGNEP 312
           + L  N P
Sbjct: 345 RELFDNMP 352



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 29/249 (11%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG- 126
           +F      D+  +S M+  Y+R+G     + LF+      + P     + ++      G 
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 127 -----ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                 L++G   + FI            NA++DM+AK G VD A  LF  M  RT+  W
Sbjct: 116 LFHAYVLKLGHIDDHFIR-----------NAILDMYAKNGQVDLARNLFEQMAERTLADW 164

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S+I+G    G   EAV LF  M    +    + +  +++  +  G ++  R YFD M  
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPE 220

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELK 298
                  +  +  M     +    KEA     +M    I  +   W   IS+C + G+  
Sbjct: 221 R-----SVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPT 275

Query: 299 LAESITKRL 307
           LA+SI + +
Sbjct: 276 LADSILRMI 284


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/507 (39%), Positives = 309/507 (60%), Gaps = 37/507 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM---YGS 57
           MLE G++P+  T+   + +C+ IGD  L  S+   + +     +  V+  L+ M   +G+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 58  CE----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
            E                            G + L R++FD M +RD VSW++MI GYA+
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 90  LGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            G S  +I+LF++M     + PDE+T+ +VLSAC  +GAL++  WV   + ++ +   + 
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
             N+LI M++KCG V  A ++F++M  R +VS+ ++I+G A +G G EA+ L   M E G
Sbjct: 429 GFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG 488

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           + PD V ++G+L+ACSH GL+++G+  F S++      P ++HY CMVD+L R+G + EA
Sbjct: 489 IEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEA 543

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
              IQ MP++ +  ++ +L++A      + L E    +L   EP +  NYVLLS+IYA  
Sbjct: 544 KMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASF 603

Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
            RWE   ++RE+M K G+KK  G + +E   ++++F  GD+SH QSK+IY++L E+ RKM
Sbjct: 604 GRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKM 663

Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
           K+ G+V   S  L D+ EE+KE+ L  HSEKLAI FALL +  GT IR+VKNLR+C DCH
Sbjct: 664 KRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCH 723

Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
           +A K ISK+  REIVVRD +RFH F +
Sbjct: 724 TAIKMISKLEGREIVVRDNNRFHCFSE 750



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 37/290 (12%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  R+ FDEM ER  VSW+AM   YA+     +A++LF QM   G+ PD+ T V  +
Sbjct: 206 GDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTI 265

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD--------------- 164
           S+C+ +G   +   +   I+++ +  +  +  AL+DM AK G+++               
Sbjct: 266 SSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNA 325

Query: 165 -----------------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                             A +LF +M  R +VSW S+IAG A +G    ++ LF+EM+  
Sbjct: 326 VTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISC 385

Query: 208 -GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             + PD+V    +LSAC H G +       D ++    I   I  +  ++ M  + G V 
Sbjct: 386 MDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NIKLGISGFNSLIFMYSKCGSVA 444

Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAES--ITKRLIGNEPMH 314
           +AH   Q M    + + + TLIS   A G  K A    +T    G EP H
Sbjct: 445 DAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 56/308 (18%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P  F Y +++K     G++      H  VLK    DD  ++N ++ MY    G ++L R 
Sbjct: 98  PQPFVYIYLIKLAGKSGNM-----FHAYVLKLGHIDDHFIRNAILDMYAK-NGQVDLARN 151

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F++M+ER    W++MI G  + G  T+A+ LF  M                        
Sbjct: 152 LFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA---------------------- 189

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
                            R++    +++  +AK GD++ A + F  M  R++VSW ++ + 
Sbjct: 190 -----------------RNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---LVDKGREYFDSMKNDFG 244
            A      EA+ LF +MLE G+ PDD  +V  +S+CS  G   L D      D       
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLN 292

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
              K      ++DM  + G ++ A     ++  + N + W  +ISA    G+L LA    
Sbjct: 293 SFVKT----ALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA---- 344

Query: 305 KRLIGNEP 312
           + L  N P
Sbjct: 345 RELFDNMP 352



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 29/249 (11%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG- 126
           +F      D+  +S M+  Y+R+G     + LF+      + P     + ++      G 
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 127 -----ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                 L++G   + FI            NA++DM+AK G VD A  LF  M  RT+  W
Sbjct: 116 MFHAYVLKLGHIDDHFIR-----------NAILDMYAKNGQVDLARNLFEQMAERTLADW 164

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S+I+G    G   EAV LF  M    +    + +  +++  +  G ++  R YFD M  
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPE 220

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELK 298
                  +  +  M     +    KEA     +M    I  +   W   IS+C + G+  
Sbjct: 221 R-----SVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPT 275

Query: 299 LAESITKRL 307
           LA+SI + +
Sbjct: 276 LADSILRMI 284


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/474 (40%), Positives = 291/474 (61%), Gaps = 6/474 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN+FTY  +L A   I        VH  V+K  +     V   L+  Y    G
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL-G 446

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   KVF  +  +D V+WSAM+ GYA+ G +  AI +F ++   GV P+E T  ++L+
Sbjct: 447 KVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILN 506

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            C    A +  GK    F  K  ++ S+ + +AL+ M+AK G ++ A ++F+    + +V
Sbjct: 507 VCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLV 566

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG+ ++A+ +F+EM +  V  D V F+G+ +AC+H GLV++G +YFD M
Sbjct: 567 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIM 626

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D  I P  EH  CMVD+  R+G++++A + I  MP  A   IWRT+++AC    + +L
Sbjct: 627 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTEL 686

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
                +++I   P   + YVLLS++YA+   W+++ K+R++M++R +KK PG + IE+ N
Sbjct: 687 GRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 746

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           + Y F+ GD+SH    +IY  L+++  ++K  GY P TS VL DI++E KE  L +HSE+
Sbjct: 747 KTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSER 806

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           LAIAF L+ TP G+P+ I+KNLRVC DCH   K I+KI  REIVVRD +RFHHF
Sbjct: 807 LAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHF 860



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 28/290 (9%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV--HMYGSCEGGIELGRKVFD 70
           +  VLK  A + D   G+ +H   +KF F DD+ V  +LV  +M GS     + GR VFD
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS---NFKDGRNVFD 156

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           EM ER+ V+W+ +I GYAR  L+ + + LF +MQ  G  P+  T    L    + G    
Sbjct: 157 EMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR 216

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G  V + + K  +++++ + N+LI+++ KCG+V KA  LF     +++V+W S+I+G A 
Sbjct: 217 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGREYFDSM 239
           +G  LEA+ +F  M    V   + +F  ++  C+           HC +V  G  +  ++
Sbjct: 277 NGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNI 336

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +        + +  CM  +        +A    ++     N + W  +IS
Sbjct: 337 RTAL----MVAYSKCMAML--------DALRLFKETGFLGNVVSWTAMIS 374



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 8/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  PN FT+   L   A  G    G  VH  V+K      I V N+L+++Y  C G
Sbjct: 189 MQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC-G 247

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R +FD+   +  V+W++MI GYA  GL  +A+ +F  M+++ V   E +  +++ 
Sbjct: 248 NVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIK 307

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIV 179
            C +L  L   + +   + K        +  AL+  ++KC  +  AL+LF+       +V
Sbjct: 308 LCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVV 367

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT++I+G   +    EAV LF EM   GV P++  +  +L+A     ++     +   +
Sbjct: 368 SWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVV 424

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K ++     +     ++D   + G+V EA +    +    + + W  +++     GE + 
Sbjct: 425 KTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAGYAQAGETEA 481

Query: 300 AESITKRL 307
           A  I   L
Sbjct: 482 AIKIFSEL 489



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 112/248 (45%), Gaps = 3/248 (1%)

Query: 49  NTLVHMYGSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
           N  ++ +G+     +     +FD+  +RD  S+++++ G++R G + +A  LF  +Q  G
Sbjct: 33  NFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLG 92

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           +  D     +VL     L     G+ +     K      V +  +L+D + K  +     
Sbjct: 93  MEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGR 152

Query: 168 KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            +F  M  R +V+WT++I+G A +    E + LF  M + G  P+   F   L   +  G
Sbjct: 153 NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEG 212

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
           +  +G +    +  + G+   I     ++++  + G V++A     K  +++  + W ++
Sbjct: 213 VGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSM 270

Query: 288 ISACCARG 295
           IS   A G
Sbjct: 271 ISGYAANG 278


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/477 (40%), Positives = 290/477 (60%), Gaps = 6/477 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF--QFGDDIHVQNTLVHMYGSC 58
           M +  V P+      V+ A   + DL  GKS+HG V K   +F  DI +  +L  MY   
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAK- 233

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +E+ R  F+ M + + + W+AMI GYA  G   +AI LFR+M    +  D ITM + 
Sbjct: 234 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 293

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           + A   +G+LE+ +W++ +I K        +   LIDM+AKCG +  A  +F  +  + +
Sbjct: 294 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 353

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V W+ +I G  +HG G EA+ L+ EM +AGV P+D  F+GLL+AC + GLV +G E F  
Sbjct: 354 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 413

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D GI P  +HY C+VD+L R+G + +A++FI  MPI+    +W  L+SAC    +++
Sbjct: 414 MP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 472

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E   ++L   +P +  +YV LS++YA    W +   +R +M ++G+ K  G + IE++
Sbjct: 473 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             +  F  GD+SH +SKEI+E LD + +++K AGYVP    VL D+N E+ E+ L  HSE
Sbjct: 533 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSE 592

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +LA+A+ ++ T PGT +RI KNLR C +CHSA K ISK+ +REI++RD  RFHHFKD
Sbjct: 593 RLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKD 649



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 25/311 (8%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN FT+ +VLKAC G     +GK +HG   K+ FG ++ VQN+LV MY    G I   
Sbjct: 81  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKF-GQISYA 139

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R VFD++ +R  VSW+++I GY + G   +A+++F++M+   V PD I +V+V++A T++
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L  GK +   + K  +     +  +L  M+AK G V+ A   F  M    ++ W ++I
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 259

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A +G G EA+ LF EM+   +  D +     + A +  G ++  R + D      G 
Sbjct: 260 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLD------GY 312

Query: 246 IPKIEHY------GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI----------S 289
           I K E+         ++DM  + G +  A     ++  + + ++W  +I           
Sbjct: 313 ISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA-DKDVVLWSVMIMGYGLHGHGQE 371

Query: 290 ACCARGELKLA 300
           A C   E+K A
Sbjct: 372 AICLYNEMKQA 382



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 2/249 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    K F E+SE D + W+A+I GY +  +    I ++  MQIS V P+  T + VL
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC       +GK +     K     +V + N+L+ M+AK G +  A  +F  ++ RT+V
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS+I+G   +G  +EA+ +F+EM +  V PD +A V +++A ++   + +G+     +
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHGL 211

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+  + +    +  M  + G V+ A  F  +M  + N I+W  +IS     G  + 
Sbjct: 212 VTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYANNGYGEE 270

Query: 300 AESITKRLI 308
           A  + + +I
Sbjct: 271 AIKLFREMI 279


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/459 (41%), Positives = 290/459 (63%), Gaps = 1/459 (0%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L+ CA + DL +G  +H  + K     D+   N+L+ MY    G I     +FDE++ +D
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAK-AGLINEATMLFDEIAIKD 371

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
           ++S+ A++ GY + G + +A  +F++MQ   V PD  TMV+++ AC+ L AL+ G+    
Sbjct: 372 TISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHG 431

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
            +  + +     +CN+LIDM+AKCG +D + ++F  M  R IVSW ++IAG  +HG G E
Sbjct: 432 SVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKE 491

Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
           A  LF  M   G  PDDV F+ L++ACSH GLV +G+ +FD+M + +GI+P++EHY CMV
Sbjct: 492 ATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 551

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
           D+L R G + EA++FIQ MP++A+  +W  L+ AC     + L + +++ +    P    
Sbjct: 552 DLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTG 611

Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE 376
           N+VLLS+I++   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH  S +
Sbjct: 612 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPD 671

Query: 377 IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIR 436
           IY  LD +   +KK GY   TS VL D+ EE+KE AL  HSEKLAIAF +L       I 
Sbjct: 672 IYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIF 731

Query: 437 IVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + KNLRVC DCH+A K+++ + NR I+VRD +RFHHFK+
Sbjct: 732 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKN 770



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 49/341 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V PNK+T+PFVLKAC+ + DL  G+++H          D+ V   L+ +Y  C  
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRC-A 148

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVL 119
                  VF +M  RD V+W+AM+ GYA  G+   AI     MQ   G+ P+  T+V++L
Sbjct: 149 RFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLL 208

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
                 GAL  G  V ++  +  ++++   V +  AL+DM+AKC  +  A ++F  M  R
Sbjct: 209 PLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR 268

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEML------------------------------- 205
             V+W+++I G  +  R  EA  LF++ML                               
Sbjct: 269 NEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQL 328

Query: 206 -----EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
                ++G+  D  A   LLS  +  GL+++    FD +      I     YG ++    
Sbjct: 329 HALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIA-----IKDTISYGALLSGYV 383

Query: 261 RSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGELK 298
           ++G+ +EA    +KM    ++ +     +LI AC     L+
Sbjct: 384 QNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQ 424



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 150/303 (49%), Gaps = 7/303 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF---QFGDDIHVQNTLVHMYGSCEGG 61
           G+ PN  T   +L   A  G L  G SVH   L+    Q  + + +   L+ MY  C+  
Sbjct: 196 GLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHL 255

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV-TVLS 120
           +   R VF  M+ R+ V+WSA+IGG+      T+A +LF+ M + G+C    T V + L 
Sbjct: 256 VYACR-VFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALR 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L  L +G  + + + K  ++  +   N+L+ M+AK G +++A  LF  +  +  +S
Sbjct: 315 VCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS 374

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++++G   +G+  EA  +F++M    V PD    V L+ ACSH   +  GR    S+ 
Sbjct: 375 YGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVI 434

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G+  +      ++DM  + GR+  + +   KMP   + + W T+I+     G  K A
Sbjct: 435 IR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIHGLGKEA 492

Query: 301 ESI 303
            ++
Sbjct: 493 TTL 495



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 16/239 (6%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G + L R+VFD +   D+ +++A+I  Y+  G    AIDL+R M    V P++ T   V
Sbjct: 46  RGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFV 105

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC+ L  L  G+ + +      ++  + +  ALID++ +C     A  +F  M  R +
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKG----- 232
           V+W +++AG A HG    A+A   +M +  G+ P+    V LL   +  G + +G     
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 233 ---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              R Y D  +N+  ++        ++DM  +   +  A      M +  N + W  LI
Sbjct: 226 YCLRAYLD--QNEEQVLIGTA----LLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALI 277


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/480 (39%), Positives = 306/480 (63%), Gaps = 8/480 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           ML   V P+ +T+PFVLKACA +     G+ + G  +K  F + D H QN+L+  YG C 
Sbjct: 128 MLHNDVVPDGYTFPFVLKACAQLLAFRQGRQLQGHAMKLGFLEHDEHAQNSLISFYGKC- 186

Query: 60  GGIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           G  EL R+ F++M   ER + SWSA++  Y + G   D ++ F  M   G  PDE +MV+
Sbjct: 187 GEPELARRAFEQMEAGERTAASWSALLAAYTKAGRWADCLESFGAMVRDGWRPDESSMVS 246

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR- 176
            LSAC  LGA +VG+ V   + +  V  +  +  +L+DM+AKCG ++KA  +F  M+G+ 
Sbjct: 247 ALSACAHLGAYDVGRSVHGALLRNTVTLNTFMETSLVDMYAKCGCIEKATAVFDGMDGKK 306

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
              +++++++GLA+HG G +A+ +F+ M+  G  PD+  +VG+L+ACS  GL+++G   F
Sbjct: 307 NEWTYSAMVSGLALHGDGRKALKVFDAMISEGHKPDEAVYVGVLNACSRSGLLEEGLRCF 366

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D M+ +  + P  +HYGCMVD++ R+GR+ EA E I  MP       WR+L++AC   G+
Sbjct: 367 DRMRLERKVAPNAQHYGCMVDLMARAGRMDEARELIGSMPTGPTDTAWRSLLNACRIHGD 426

Query: 297 LKLAESITKRL--IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
           ++LA+   + L  +G   ++  +Y++L+ ++AK   WE+   +R     RG+ + PG + 
Sbjct: 427 IELADRALQELARLGGA-VNAGDYIILADMHAKAKNWEEAVALRTEAVHRGLAQAPGFSA 485

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           +E+  +++ F   D+SH ++ +IYEML +M  +++  GY P TSEV L+ ++E+K  A+ 
Sbjct: 486 VEVHGKMHRFTSQDRSHPRTADIYEMLHQMEWQLRFEGYKPDTSEVALEADDEEKRRAVA 545

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            HS+KLA+AF LL TP GTP+R+V NLR+  +CH+ +  IS+I+ RE+VVRDR+RFH F+
Sbjct: 546 AHSQKLAMAFGLLSTPEGTPVRVVTNLRMSKECHAYSALISEIFGREVVVRDRNRFHRFR 605



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 10/271 (3%)

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL-STDAIDLFRQMQISGVCPDEIT 114
           G   G +E    +F  + E ++  ++ ++ G+   G     A+ L+  M  + V PD  T
Sbjct: 80  GEWPGSMEYAAAIFATLDEPEAFDYNTLMRGHVVGGRDPAAALRLYVDMLHNDVVPDGYT 139

Query: 115 MVTVLSACTDLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
              VL AC  L A   G+ ++    K   +       N+LI  + KCG+ + A + F  M
Sbjct: 140 FPFVLKACAQLLAFRQGRQLQGHAMKLGFLEHDEHAQNSLISFYGKCGEPELARRAFEQM 199

Query: 174 NG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
               RT  SW++++A     GR  + +  F  M+  G  PD+ + V  LSAC+H G  D 
Sbjct: 200 EAGERTAASWSALLAAYTKAGRWADCLESFGAMVRDGWRPDESSMVSALSACAHLGAYDV 259

Query: 232 GREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           GR    + ++N   +   +E    +VDM  + G +++A      M  + N   +  ++S 
Sbjct: 260 GRSVHGALLRNTVTLNTFME--TSLVDMYAKCGCIEKATAVFDGMDGKKNEWTYSAMVSG 317

Query: 291 CCARGELKLAESITKRLI--GNEPMHESNYV 319
               G+ + A  +   +I  G++P  E+ YV
Sbjct: 318 LALHGDGRKALKVFDAMISEGHKP-DEAVYV 347


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/503 (37%), Positives = 288/503 (57%), Gaps = 33/503 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+ F    +  A   +  L LG+ +H       +  D  V+++L+ MY  C G  + 
Sbjct: 98  ALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKC-GVPQD 156

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-------------- 110
            RKVFD +  ++SV W+A+I GYA  G + +A+DLF+ M   G+                
Sbjct: 157 ARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNY 216

Query: 111 ------------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D   + TV+    DL AL +G+ +  F+ +     S+ + NA
Sbjct: 217 TGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNA 276

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM++KC D+  A ++F  +  R ++SWT+++ G A HGR  E  AL+  ML AG+ P+
Sbjct: 277 LVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPN 336

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGL+ ACSH GLV KGR+ FDSMK ++G+ P ++HY C +D+L RSG + EA + I
Sbjct: 337 EVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLI 396

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP E +   W  L+SAC    + ++   +   L+   P   S Y+LLS++YA   +W+
Sbjct: 397 TTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWD 456

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              K+R++M +  ++K+PG + +E   E   F  G+      +EI   L+E+  +M+K G
Sbjct: 457 SVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRG 516

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS V+ D+ E +KE  L  HSE+LA+AF +LK+PPG+ IR+VKNLRVC DCH+  K
Sbjct: 517 YVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMK 576

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
           FIS I  R+I+VRD  RFHHF+D
Sbjct: 577 FISAIAQRKIIVRDASRFHHFED 599



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 4/200 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           + VH  +LK    D       LV  Y  SC   +   R+ FD+   RD   +SA++   +
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCL--LPDARRAFDDAPRRDLHLYSALLAAVS 78

Query: 89  RLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
                   + L R+M     + PD   + ++ SA   L +L +G+ + +       +   
Sbjct: 79  HSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADN 138

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + ++LIDM+ KCG    A K+F S+  +  V WT++I+G A +G   EA+ LF+ M   
Sbjct: 139 VVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAH 198

Query: 208 GVPPDDVAFVGLLSACSHCG 227
           G+        G + A ++ G
Sbjct: 199 GLFTWTALISGFVKAGNYTG 218


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/416 (42%), Positives = 274/416 (65%), Gaps = 34/416 (8%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+PFVLK    + D+  G+ VHG  + F F   +HV   L+ MY SC GG+   RK
Sbjct: 114 PDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSC-GGLGDARK 172

Query: 68  VFDEMSERD---------------------------------SVSWSAMIGGYARLGLST 94
           VFDEM  RD                                 +VSW+ +I GYAR G ++
Sbjct: 173 VFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRAS 232

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +AI++F++M +  V PDE+T++ VLSAC DLG+LE+G+ + S+++ + +NR+V L NA+I
Sbjct: 233 EAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVI 292

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+AK G++ KAL++F S+N R +V+WT++I GLA HG G EA+ +F+ M++AGV P+DV
Sbjct: 293 DMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDV 352

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F+ +LSACSH G VD G  +F+SM++ +GI P IEHYGCM+D+L R+G+++EA E I+ 
Sbjct: 353 TFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKS 412

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP E+N  IW +L++A     ++ + E    +LI  EP +  NY+LL+++Y+ L RW++ 
Sbjct: 413 MPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDES 472

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
             +R++M   G+KK+ G + IE++N +Y+F+ GD SH Q ++I+E+L EM  +++ 
Sbjct: 473 RMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDLSHPQVEKIHELLQEMDLQIQS 528



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P++ T   VL ACA +G L LG+ +   V        + + N ++ MY    G
Sbjct: 241 MLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK-SG 299

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    +VF+ ++ER+ V+W+ +I G A  G   +A+ +F +M  +GV P+++T + +LS
Sbjct: 300 NITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILS 359

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ +G +++G ++  S   K  +N ++     +ID+  + G + +A ++ +SM   +  
Sbjct: 360 ACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNA 419

Query: 180 S-WTSVIAGLAMH 191
           + W S++A   +H
Sbjct: 420 AIWGSLLAASNVH 432



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 35/246 (14%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           AI ++R+       PD  T   VL     +  +  G+ V         + SV +   LI 
Sbjct: 100 AITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQ 159

Query: 156 MFAKCGDVDKALKLFRSMNGRTI---------------------------------VSWT 182
           M++ CG +  A K+F  M  R +                                 VSWT
Sbjct: 160 MYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWT 219

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            VI+G A  GR  EA+ +F+ ML   V PD+V  + +LSAC+  G ++ G E   S  + 
Sbjct: 220 CVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELG-ERICSYVDH 278

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+   +     ++DM  +SG + +A E  + +  E N + W T+I+     G    A  
Sbjct: 279 RGMNRAVSLNNAVIDMYAKSGNITKALEVFESVN-ERNVVTWTTIITGLATHGHGAEALV 337

Query: 303 ITKRLI 308
           +  R++
Sbjct: 338 MFDRMV 343


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 287/475 (60%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV+ +  +   V  AC     L  GK +H  + + +      VQN LV MY    G
Sbjct: 440 MLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARL-G 498

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R++FD M+ R+ +SW+AM+G +++LGL+ +A+ +FR + + GV P+E+T   VL+
Sbjct: 499 SLEDAREIFDAMTTRNVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLN 558

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +L ++   K V++ + +     +V + N L+    KCG +++    F+ M  +  VS
Sbjct: 559 ACGNLASIPAAKLVQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVKNQVS 618

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W + IA  A HG G+  V LF+ M   G+    V  +G+LS+CSH GLV +G  YF +M 
Sbjct: 619 WNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMH 678

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKL 299
            D+G   + EHY C++D+L R+G ++ A EF++++P     +  W TL+  C   G+L+ 
Sbjct: 679 VDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDQSVFPWITLLCGCKLHGDLER 738

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
               T+R++G  P     Y+++ ++YA   +W +   +R+ M + G KK PG + IE+  
Sbjct: 739 GGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVELGPKKEPGLSWIEVKG 798

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+EF  GD SH +S EI+  L+ +  +MK+AG+V     V+ D+  ++KE  L +HSEK
Sbjct: 799 RIHEFRVGDTSHPRSSEIHRELERLNEEMKRAGFVCDIKAVVYDLQAKEKESLLCQHSEK 858

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIAF L+ T  G P+RI+KNLRVC+DCHSATKFIS +  REIVVRD +RFHHF+
Sbjct: 859 LAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFR 913



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG---DDIHVQNTLVHMYGS 57
           ML  G  P++ TY  +L AC     L  G  V    ++   G    D+ +   +++MY  
Sbjct: 332 MLLVGELPSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSR 391

Query: 58  CEGGIELGRKVFDEMSERDSVS---WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           C+              +RD  S   W+ ++  Y       +A  +FR M + GV  D ++
Sbjct: 392 CKSPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVS 451

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           ++TV +AC    +LE GKW+ S + +  + R   + NAL+ M+A+ G ++ A ++F +M 
Sbjct: 452 LMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMT 511

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R ++SWT+++   +  G   EA+ +F  +L  GV P++V F  +L+AC +   +   + 
Sbjct: 512 TRNVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAK- 570

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
              +  ++ G    +E    ++  L + G ++E   F Q M ++ N + W T I+A    
Sbjct: 571 LVQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVK-NQVSWNTAIAANAQH 629

Query: 295 G 295
           G
Sbjct: 630 G 630



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 17/295 (5%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSCEGGIEL 64
           S +  T+  ++  CA + DL  G+ +HG +L+   + GD +  +  L+ MY  C G  E 
Sbjct: 37  SADASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGAR--LLAMYCKC-GSPEE 93

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VF  + ++  V+W+++IG  AR G   +A  LFR+MQ+ GV P+++T V VL AC  
Sbjct: 94  ARAVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGH 153

Query: 125 LGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
              ++    + + +E    +   V +  A+++ + KCGD+D A  +F  +  R    W +
Sbjct: 154 PWEVDT---IRARVEACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNA 210

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---REYFDSMK 240
           +I+ L  H +G EA+ LF +M   GV P+    V  L+AC H     +      +   + 
Sbjct: 211 MISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELA 270

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            D   + +      +V+M  + G+V +A E  +++  E + + W  +++A    G
Sbjct: 271 GDADTVVQT----ALVNMYGKFGKVDDAEEIFERIQ-ERDVVSWNAMLTANACNG 320



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+PNK T    L AC    D +    +H    +     D  VQ  LV+MYG   G ++ 
Sbjct: 235 GVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTALVNMYGKF-GKVDD 293

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++F+ + ERD VSW+AM+   A  G    A   FR+M + G  P  IT V +L+AC  
Sbjct: 294 AEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNACFL 353

Query: 125 LGALEVGKWVESF-IEKQMVNRSVGLC--NALIDMFAKCGDVDKA----LKLFRSMNGRT 177
              L+ G +V++  +E      SV +    A+++M+++C     A    L L +  +  +
Sbjct: 354 AAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQPS 413

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           I+ W +V++    + +  EA  +F  ML  GV  D V+ + + +AC     ++KG+ +  
Sbjct: 414 IMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGK-WIH 472

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           S+  +  +  K      +V M  R G +++A E    M    N I W  ++
Sbjct: 473 SLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTR-NVISWTAMV 522



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  TY  VL AC    +++  ++   A    +   D+ V   +++ YG C G ++ 
Sbjct: 136 GVMPNDVTYVAVLGACGHPWEVDTIRARVEACGSLEL--DVIVATAVMNAYGKC-GDLDS 192

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VFD +  RD+  W+AMI          +A++LFRQM++ GV P++ T V  L+AC  
Sbjct: 193 AWGVFDGILVRDAAVWNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCH 252

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
                    + +F  +   +    +  AL++M+ K G VD A ++F  +  R +VSW ++
Sbjct: 253 SRDFSEALRIHAFARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAM 312

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           +   A +G   +A   F EML  G  P  + +V +L+AC
Sbjct: 313 LTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNAC 351


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/467 (40%), Positives = 291/467 (62%), Gaps = 3/467 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+FT+  VL +C     L LGK +HG ++K+ +   I V ++L+ MY    G IE  R+
Sbjct: 150 PNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA-GQIEEARE 208

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F+ + ERD VS +A+I GYA+LGL  +A+++F+++Q  G+ P+ +T  ++L+A + L  
Sbjct: 209 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLAL 268

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ GK     + ++ +     L N+LIDM++KCG++  A +LF +M  RT +SW +++ G
Sbjct: 269 LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVG 328

Query: 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
            + HG G E + LF  M  E  V PD V  + +LS CSH  + D G   +D M   ++GI
Sbjct: 329 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGI 388

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P  EHYGC+VDML R+GR+ EA EFI++MP +    +  +L+ AC     + + E +  
Sbjct: 389 KPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGH 448

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           RLI  EP +  NYV+LS++YA   RWE    +R +M ++ + K PG + I+ +  ++ F 
Sbjct: 449 RLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 508

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D++H + +E+   + E+  KMK+AGYVP  S VL D++EE KE  L  HSEKLA+ F 
Sbjct: 509 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFG 568

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L+ T  G PIR+ KNLR+C DCH+  K  SK++ RE+ +RD++RFH 
Sbjct: 569 LITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQ 615



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 152/277 (54%), Gaps = 5/277 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L AC     L  G+ VH  ++K ++    +++  L+  YG C+  +E  RKV DEM
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC-LEDARKVLDEM 112

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            E++ VSW+AMI  Y++ G S++A+ +F +M  S   P+E T  TVL++C     L +GK
Sbjct: 113 PEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGK 172

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   I K   +  + + ++L+DM+AK G +++A ++F  +  R +VS T++IAG A  G
Sbjct: 173 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLG 232

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEH 251
              EA+ +F+ +   G+ P+ V +  LL+A S   L+D G++ +   ++ +      +++
Sbjct: 233 LDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 292

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              ++DM  + G +  A      MP E   I W  ++
Sbjct: 293 --SLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAML 326


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/468 (40%), Positives = 288/468 (61%), Gaps = 6/468 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ T+  +LK     G +N    +  A+        +   N ++  +G   G +   R V
Sbjct: 232 NEVTWTAMLKGYTRSGRINEAAELFKAMPV----KPVAACNGMIMGFG-LNGEVGKARWV 286

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD+M E+D  +WSA+I  Y R G   +A+ LF  MQ  GV P+  +++++LS C  L +L
Sbjct: 287 FDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASL 346

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           + G+ V S + +   +  + + + LI M+ KCGD+    ++F   + + IV W S+IAG 
Sbjct: 347 DHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGY 406

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A HG G +A+ +F EM  +G  PD++ F+G+LSAC + G V +G E F+SMK+ + +  K
Sbjct: 407 AQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQK 466

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EHY CMVD+L R+G++ EA   I+ MP+EA+ I+W  L+SAC     L LAE   K+L+
Sbjct: 467 TEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLL 526

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EP     Y+LLS++YA   RW+   ++R+ M  R + K PG + IE+DN+++ F  G 
Sbjct: 527 QLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGG 586

Query: 369 KSHHQSKE-IYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL 427
            + H   E I + L+++G  +++AGY P  S V+ D++EEDK  +L  HSEK+A+A+ LL
Sbjct: 587 SASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLL 646

Query: 428 KTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           K P G PIR++KNLRVC DCHSA K I+++  REI++RD +RFHHFKD
Sbjct: 647 KVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKD 694



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  +   +L  C  +  L+ G+ VH  +++  F  DI+V + L+ MY  C G
Sbjct: 321 MQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKC-G 379

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G++VFD  S +D V W+++I GYA+ G    A+++F +M  SG  PDEIT + VLS
Sbjct: 380 DLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLS 439

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC   G ++ G +  ES   K  V++       ++D+  + G +++A+ L  +M      
Sbjct: 440 ACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADA 499

Query: 179 VSWTSVIAGLAMH 191
           + W ++++    H
Sbjct: 500 IVWGALLSACRTH 512



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 56  GSC-EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD--E 112
           G C EG +   R++FDEM +R+ V+W++MI GYA      + +D+ R++    V PD  E
Sbjct: 180 GLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAM----NNKVDVARKL--FEVMPDKNE 233

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
           +T   +L   T  G   + +  E F  K M  + V  CN +I  F   G+V KA  +F  
Sbjct: 234 VTWTAMLKGYTRSG--RINEAAELF--KAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQ 289

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           M  +   +W+++I      G  LEA+ALF  M   GV P+  + + +LS C     +D G
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349

Query: 233 RE 234
           R+
Sbjct: 350 RQ 351



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 23/217 (10%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +K+FD+M ER+++SW+ ++ GY + G+ ++A  +F +M    V    ++  +++     
Sbjct: 66  AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNV----VSWTSMVRGYVQ 121

Query: 125 LGALEVGK---WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            G ++  +   W     EK +V+ +V L   + D     G VD+A +LF  +  + +V+ 
Sbjct: 122 EGLIDEAELLFW--RMPEKNVVSWTVMLGGLIED-----GRVDEARRLFDMIPVKDVVAS 174

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           T++I GL   GR  EA  +F+EM +  V    VA+  ++S  +    VD  R+ F+ M +
Sbjct: 175 TNMIGGLCSEGRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPD 230

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
              +      +  M+    RSGR+ EA E  + MP++
Sbjct: 231 KNEVT-----WTAMLKGYTRSGRINEAAELFKAMPVK 262



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 49/244 (20%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I+  R +FD++  +   SW+A++ GY       +A  LF +M      P+  T+    
Sbjct: 30  GQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PERNTI---- 79

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                        W                 N L+  + K G + +A K+F  M  R +V
Sbjct: 80  ------------SW-----------------NGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWTS++ G    G   EA  LF  M E  V    V++  +L      G VD+ R  FD +
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFDMI 166

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                 +  +     M+  LC  GR+ EA E   +MP + N + W ++IS      ++ +
Sbjct: 167 P-----VKDVVASTNMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISGYAMNNKVDV 220

Query: 300 AESI 303
           A  +
Sbjct: 221 ARKL 224



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           +   + S  +    I  FA+ G +D+A  +F  +  +T+ SW +++AG   + R  EA  
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF++M E     + +++ GL+S     G++ + R+ FD M         +  +  MV   
Sbjct: 69  LFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKMPER-----NVVSWTSMVRGY 119

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
            + G + EA     +MP E N + W  ++      G +  A    +RL    P+   + V
Sbjct: 120 VQEGLIDEAELLFWRMP-EKNVVSWTVMLGGLIEDGRVDEA----RRLFDMIPV--KDVV 172

Query: 320 LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
             +++   L    + ++ RE+ D+   + +   T
Sbjct: 173 ASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWT 206



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 28/257 (10%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
           EG I+    +F  M E++ VSW+ M+GG    G   +A  LF          D I +  V
Sbjct: 122 EGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLF----------DMIPVKDV 171

Query: 119 LSACTDLGAL-EVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +++   +G L   G+  E+  I  +M  R+V    ++I  +A    VD A KLF  M  +
Sbjct: 172 VASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK 231

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV-GLLSACSHCGLVDKGREY 235
             V+WT+++ G    GR  EA  LF+ M     P   VA   G++      G V K R  
Sbjct: 232 NEVTWTAMLKGYTRSGRINEAAELFKAM-----PVKPVAACNGMIMGFGLNGEVGKARWV 286

Query: 236 FDSMK-NDFGIIPKIEHYGCMVDMLCRSGRVKEA---HEFIQKMPIEANPIIWRTLISAC 291
           FD MK  D G       +  ++ +  R G   EA      +Q+  +  N     +++S C
Sbjct: 287 FDQMKEKDDGT------WSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVC 340

Query: 292 CARGELKLAESITKRLI 308
            +   L     +  +L+
Sbjct: 341 GSLASLDHGRQVHSQLV 357


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/505 (36%), Positives = 301/505 (59%), Gaps = 34/505 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-------- 56
           G  P++ T   VL +      LN+G+ +HG V+K     D  V + ++ MYG        
Sbjct: 247 GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGI 306

Query: 57  ----------------------SCEGGIELGRKVFDEMSER----DSVSWSAMIGGYARL 90
                                 S  G ++   ++F+   E+    + VSW+++I G A+ 
Sbjct: 307 ISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQN 366

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
           G   +A++LFR+MQ++GV P+ +T+ ++L AC ++ AL  G+    F  +  +  +V + 
Sbjct: 367 GKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVG 426

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           +ALIDM+AKCG ++ +  +F  M  + +V W S++ G +MHG+  E +++FE ++   + 
Sbjct: 427 SALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLK 486

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD ++F  LLSAC   GL D+G +YF  M  ++GI P++EHY CMV++L R+G+++EA++
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546

Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            I++MP E +  +W  L+++C  +  + LAE   ++L   EP +   YVLLS+IYA    
Sbjct: 547 LIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGM 606

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
           W +   IR  M+  G+KK PG + I++ N +Y  + GDKSH Q  +I E +DE+ ++M+K
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRK 666

Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
           +G+ P     L D+ E+++E  L  HSEKLA+ F LL TP GTP++++KNLR+C DCH+ 
Sbjct: 667 SGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAV 726

Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
            KFIS    REI +RD +RFHHFKD
Sbjct: 727 IKFISSYAGREIFIRDTNRFHHFKD 751



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 166/378 (43%), Gaps = 73/378 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M  +G+ P+    P + K CA +    +GK +H          D  VQ ++ HMY  C G
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC-G 165

Query: 61  GIELGRKVFDEMSERDSV-----------------------------------SWSAMIG 85
            +   RKVFD MS++D V                                   SW+ ++ 
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILS 225

Query: 86  GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ---- 141
           G+ R G   +A+ +F+++   G CPD++T+ +VL +  D   L +G+ +  ++ KQ    
Sbjct: 226 GFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLK 285

Query: 142 ----------MVNRS-----------------VGLCNALIDMFAKCGDVDKALKLFRSMN 174
                     M  +S                  G+CNA I   ++ G VDKAL++F    
Sbjct: 286 DKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFK 345

Query: 175 GRT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
            +T    +VSWTS+IAG A +G+ +EA+ LF EM  AGV P+ V    +L AC +   + 
Sbjct: 346 EQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG 405

Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            GR           ++  +     ++DM  + GR+  +      MP + N + W +L++ 
Sbjct: 406 HGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNG 463

Query: 291 CCARGELKLAESITKRLI 308
               G+ K   SI + L+
Sbjct: 464 FSMHGKAKEVMSIFESLM 481



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 73/334 (21%)

Query: 33  HGAVLKFQFGDDIHVQNTLVHMYGS--CEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
           H  +LK    +D ++   L+  Y +  C    +L   V   + +    S+S++I    + 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADL---VLQSIPDPTIYSFSSLIYALTKA 94

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-----------ESFIE 139
            L T +I +F +M   G+ PD   +  +   C +L A +VGK +           ++F++
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 140 --------------------KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--- 176
                                +M ++ V  C+AL+  +A+ G +++ +++   M      
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 177 -TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-- 233
             IVSW  +++G    G   EAV +F+++   G  PD V    +L +     +++ GR  
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 234 --------------------EYFDSMKNDFGIIPKIEHYGCMVDMLC--------RSGRV 265
                               + +    + +GII     +  M   +C        R+G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 266 KEA---HEFIQKMPIEANPIIWRTLISACCARGE 296
            +A    E  ++  +E N + W ++I+ C   G+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/492 (39%), Positives = 291/492 (59%), Gaps = 41/492 (8%)

Query: 19  ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV 78
           AC+ I  L  GK VH   +K     + +V N L+ +YG     I   R++FD M+ +D+V
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRS-IGSVRQIFDRMTVKDTV 485

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--------------- 123
           S+++ +    +  L  +A D+F  M      PD ++  T++SAC                
Sbjct: 486 SYNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSM 541

Query: 124 --------------------DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
                               +LGA ++G+ + +   K  ++  + + NAL+ M+ KC   
Sbjct: 542 LHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA 601

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D +LK+F SM  R I +W ++I G A HG G EA+ +++ M+ AGV P++V FVGLL AC
Sbjct: 602 D-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHAC 660

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH GLVD+G ++F SM +D+G+ P +EHY CMVD+L R+G V+ A  FI  MPIE + +I
Sbjct: 661 SHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVI 720

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W  L+ AC     +++     ++L   EP +  NYV+LS+IY+    W++  K+R++M +
Sbjct: 721 WSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKE 780

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           RG+ K PG + +++ N+++ FV GD+ H Q + IY  L E+   +K  GYVP T  VL D
Sbjct: 781 RGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHD 840

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           I+EE KE +L  HSEKLA+A+ LL TP G PI+I+KNLR+C DCH+  KF+S +  REI 
Sbjct: 841 IDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREID 900

Query: 464 VRDRHRFHHFKD 475
           VRD +RFHHF++
Sbjct: 901 VRDGNRFHHFRN 912



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 131/279 (46%), Gaps = 18/279 (6%)

Query: 24  GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI-ELGRKVFDEMSERDSVSWSA 82
           GD+ L + +  A+       D+   NT+  + G C   + E  R +F+ M ER+ VSW+ 
Sbjct: 140 GDITLARKLFDAMPS----RDVSSWNTM--LTGYCHSQLMEEARNLFERMPERNGVSWTV 193

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI GY  +     A D+FR M   G+ P++  +V+VLSA   LG   + + +   + K  
Sbjct: 194 MISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTG 253

Query: 143 VNRSVGLCNALIDMFAK-CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
             R V +  A+++ + K    +D A+K F  M  R   +W+++IA L+  GR  +A A++
Sbjct: 254 FERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY 313

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
           +      VP    +   +L+  +  G +D  +  FD +       P +  +  M+    +
Sbjct: 314 QRDPLKSVP----SRTSMLTGLARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQ 364

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           +  V EA +   +MP   N I W  +I+     G  + A
Sbjct: 365 NEMVDEAEDLFNRMPFR-NTISWAGMIAGYARNGRSEQA 402



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN      +L     +G   LG+ +H   +K      + V N LV MY  C     L  K
Sbjct: 548 PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSL--K 605

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD M ERD  +W+ +I GYA+ GL  +AI +++ M  +GV P+E+T V +L AC+  G 
Sbjct: 606 VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGL 665

Query: 128 LEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVI 185
           ++ G ++ +S      +   +     ++D+  + GDV  A      M      V W++++
Sbjct: 666 VDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALL 725

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
               +H + +E      E L +  P +   +V L +  S  G+ D+
Sbjct: 726 GACKIH-KNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDE 770



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 125/256 (48%), Gaps = 17/256 (6%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++    +F+ M  R+++SW+ MI GYAR G S  A+   + +   G+ P   ++ +   A
Sbjct: 368 VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFA 427

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C+++ ALE GK V S   K     +  +CNALI ++ K   +    ++F  M  +  VS+
Sbjct: 428 CSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSY 487

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S ++ L  +    EA  +F  M      PD V++  ++SAC+     ++  E F SM +
Sbjct: 488 NSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLH 543

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRV------KEAHEFIQKMPIEANPIIWRTLIS---ACC 292
           +     ++ +   +  +L  SG +      ++ H    K+ +++  ++   L+S    C 
Sbjct: 544 E----RELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCS 599

Query: 293 ARGELKLAESITKRLI 308
           +   LK+ +S+ +R I
Sbjct: 600 SADSLKVFDSMEERDI 615



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 49/343 (14%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G++P +     VL A   +G   + +S+H  V K  F  D+ V   +++ Y     
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVN 273

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K F+ M+ R+  +WS +I   ++ G   DA  ++++  +  V P   +M+T L+
Sbjct: 274 MLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSMLTGLA 332

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                G ++  K     +  Q+   +V   NA+I  + +   VD+A  LF  M  R  +S
Sbjct: 333 R---YGRIDDAK----ILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTIS 385

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-------- 232
           W  +IAG A +GR  +A+   + +   G+ P   +      ACS+   ++ G        
Sbjct: 386 WAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV 445

Query: 233 ---------------------------REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                                      R+ FD M      +     Y   +  L ++   
Sbjct: 446 KAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRM-----TVKDTVSYNSFMSALVQNNLF 500

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EA +    MP   + + W T+ISAC    +   A  I + ++
Sbjct: 501 DEARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSML 542



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 114/299 (38%), Gaps = 25/299 (8%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R+VFD M  RD ++W++MI  Y   G+     D  R +  +    +  T   +L
Sbjct: 47  GRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMP----DAGRSLADAISGGNLRTGTILL 102

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S     G +   + V       M  R+    NA++  + + GD+  A KLF +M  R + 
Sbjct: 103 SGYARAGRVRDARRVFD----GMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS 158

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF--- 236
           SW +++ G        EA  LFE M E       V   G +    H    D  R      
Sbjct: 159 SWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEG 218

Query: 237 --DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
                 N   ++  + H G       + G ++  H  + K   E + ++   +++     
Sbjct: 219 MTPEQPNLVSVLSAVRHLG-------KPGILESIHVLVHKTGFERDVVVGTAILNGYTK- 270

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
            ++ + +S  K     E M   N    S I A L +  +      V  +  +K +P  T
Sbjct: 271 -DVNMLDSAVKFF---EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRT 325


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/470 (40%), Positives = 282/470 (60%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P   TY  V+ ACA    L  G  +H  V K  +  D ++   L+  Y +C+  +E  
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQ-MEDS 241

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF      + V W+A++ GY       DA+ +F +M   GV P++ +  + L++C  L
Sbjct: 242 LRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGL 301

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL+ G+ + +   K  +   V + N+LI M+ +CG+++  + +F+ ++ + IVSW SVI
Sbjct: 302 EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 361

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A HG G+ A+A F +M+ + V PD++ F GLLSACSH G+  KGR  F     +   
Sbjct: 362 VGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA 421

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             K++HY CMVD+L RSG+++EA E I+ MP++AN ++W  L+SAC    +L++AE   K
Sbjct: 422 EVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAK 481

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            +I  EP   S YVLLS++YA   RW   ++IR  M +RG+ K PG + I +     EF+
Sbjct: 482 CIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFL 541

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH  S  IY+ L+ +G K+K+ GYVP     L D+ +E KE  L+ HSE+LAI F 
Sbjct: 542 SGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFG 601

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L+ T  G+ I ++KNLRVC DCHSA K I+KI  R+I+VRD  RFHHF D
Sbjct: 602 LISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMD 651



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 12/278 (4%)

Query: 24  GDLNLGK--SVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS 81
           G L  GK     G   K  F  DI   N++++ Y  C G +E G ++F EM  R+ +SW+
Sbjct: 97  GFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGY-CCNGRVEDGLRLFQEMPCRNVISWT 154

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           +MIGG  + G S +A+ LFRQM   G  V P   T   V++AC +  AL  G  + + + 
Sbjct: 155 SMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVF 214

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K   +    +  ALI  +A C  ++ +L++F       +V WT+++ G  ++ +  +A+ 
Sbjct: 215 KLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALK 274

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGL--VDKGREYFDSMKNDFGIIPKIEHYGCMVD 257
           +F EM+  GV P+  +F   L++C  CGL  +D GRE   +     G+   +     ++ 
Sbjct: 275 VFGEMMREGVLPNQSSFTSALNSC--CGLEALDWGRE-IHTAAVKLGLETDVFVGNSLIV 331

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           M  R G + +     +++  + N + W ++I  C   G
Sbjct: 332 MYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHG 368



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+ ++   L +C G+  L+ G+ +H A +K     D+ V N+L+ MY  C G
Sbjct: 279 MMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRC-G 337

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G  +F  +S+++ VSW+++I G A+ G    A+  F QM  S V PDEIT   +LS
Sbjct: 338 NLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 397

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC+  G  + G+ + + F E +     +     ++D+  + G +++A +L R+M  +   
Sbjct: 398 ACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANS 457

Query: 179 VSWTSVIAGLAMHGR 193
           + W  +++   MH +
Sbjct: 458 MVWLVLLSACTMHSK 472



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F EM  +D VSW++MI G       T A  LF +M    V    ++  T+++     G
Sbjct: 47  QLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFG 102

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +EV    E    K M  R +   N++I  +   G V+  L+LF+ M  R ++SWTS+I 
Sbjct: 103 KIEVA---EGLFYK-MPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIG 158

Query: 187 GLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKG 232
           GL  HGR  EA+ LF +M+  G  V P    +  +++AC++   + +G
Sbjct: 159 GLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 206


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/470 (40%), Positives = 282/470 (60%), Gaps = 1/470 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P   TY  V+ ACA    L  G  +H  V K  +  D ++   L+  Y +C+  +E  
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQ-MEDS 257

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            +VF      + V W+A++ GY       DA+ +F +M   GV P++ +  + L++C  L
Sbjct: 258 LRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGL 317

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
            AL+ G+ + +   K  +   V + N+LI M+ +CG+++  + +F+ ++ + IVSW SVI
Sbjct: 318 EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVI 377

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A HG G+ A+A F +M+ + V PD++ F GLLSACSH G+  KGR  F     +   
Sbjct: 378 VGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA 437

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             K++HY CMVD+L RSG+++EA E I+ MP++AN ++W  L+SAC    +L++AE   K
Sbjct: 438 EVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAK 497

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
            +I  EP   S YVLLS++YA   RW   ++IR  M +RG+ K PG + I +     EF+
Sbjct: 498 CIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFL 557

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
            GD+SH  S  IY+ L+ +G K+K+ GYVP     L D+ +E KE  L+ HSE+LAI F 
Sbjct: 558 SGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFG 617

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L+ T  G+ I ++KNLRVC DCHSA K I+KI  R+I+VRD  RFHHF D
Sbjct: 618 LISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMD 667



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 12/278 (4%)

Query: 24  GDLNLGK--SVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS 81
           G L  GK     G   K  F  DI   N++++ Y  C G +E G ++F EM  R+ +SW+
Sbjct: 113 GFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGY-CCNGRVEDGLRLFQEMPCRNVISWT 170

Query: 82  AMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           +MIGG  + G S +A+ LFRQM   G  V P   T   V++AC +  AL  G  + + + 
Sbjct: 171 SMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVF 230

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           K   +    +  ALI  +A C  ++ +L++F       +V WT+++ G  ++ +  +A+ 
Sbjct: 231 KLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALK 290

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGL--VDKGREYFDSMKNDFGIIPKIEHYGCMVD 257
           +F EM+  GV P+  +F   L++C  CGL  +D GRE   +     G+   +     ++ 
Sbjct: 291 VFGEMMREGVLPNQSSFTSALNSC--CGLEALDWGRE-IHTAAVKLGLETDVFVGNSLIV 347

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           M  R G + +     +++  + N + W ++I  C   G
Sbjct: 348 MYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHG 384



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+ ++   L +C G+  L+ G+ +H A +K     D+ V N+L+ MY  C G
Sbjct: 295 MMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRC-G 353

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +  G  +F  +S+++ VSW+++I G A+ G    A+  F QM  S V PDEIT   +LS
Sbjct: 354 NLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 413

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
           AC+  G  + G+ + + F E +     +     ++D+  + G +++A +L R+M  +   
Sbjct: 414 ACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANS 473

Query: 179 VSWTSVIAGLAMHGR 193
           + W  +++   MH +
Sbjct: 474 MVWLVLLSACTMHSK 488



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++F EM  +D VSW++MI G       T A  LF +M    V    ++  T+++     G
Sbjct: 63  QLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFG 118

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +EV    E    K M  R +   N++I  +   G V+  L+LF+ M  R ++SWTS+I 
Sbjct: 119 KIEVA---EGLFYK-MPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIG 174

Query: 187 GLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKG 232
           GL  HGR  EA+ LF +M+  G  V P    +  +++AC++   + +G
Sbjct: 175 GLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 270/410 (65%), Gaps = 32/410 (7%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  + P+KFT+PFV+K+CAG+   +LGK VHG V KF    +  V+N+LV MY  C+  +
Sbjct: 110 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDS-L 168

Query: 63  ELGRKVFDEMSERDSVSW-------------------------------SAMIGGYARLG 91
           +   KVF+EM+ERD+VSW                               +A++ GYAR+G
Sbjct: 169 DDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIG 228

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
              DA++ FR+MQ+ G+ PDEI++V+VL AC  LGALE+GKW+  + +K    R++ +CN
Sbjct: 229 CYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCN 288

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           ALI+M+AKCG +D+  +LF  MN R ++SW+++I GLA HGR  EA+ LF+EM +A + P
Sbjct: 289 ALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEP 348

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
           + + FVGLLSAC+H GL+++G  YF+SMK D+ I P +EHYGC+V++L  SGR+ +A E 
Sbjct: 349 NIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALEL 408

Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
           I+KMP++ +  IW +L+S+C +   L++A    + L+  EP    NYVLLS++YA L +W
Sbjct: 409 IKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKW 468

Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           +  +++R++M  + MKK PG + IE+DN + EF  GD S   SK IY +L
Sbjct: 469 DGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVL 518



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 83/356 (23%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK C  I +L   K +H  ++KF       +   +V +        E    +F  +++ 
Sbjct: 20  ILKNCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNH-HAETEYANLLFKRVADP 75

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQM-----QISGVCPDEITMVTVLSACTDLGALEV 130
           ++  ++AMI  Y    +   AI +++QM       + + PD+ T   V+ +C  L   ++
Sbjct: 76  NAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDL 135

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK V   + K     +  + N+L++M+ KC  +D A K+F  M  R  VSW ++I+G   
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 191 HGRGLEAVALFEEMLE-------------------------------AGVPPDDVAFVGL 219
            G+   A A+FEEM +                                G+ PD+++ V +
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 220 LSACSH-----------------------------------CGLVDKGREYFDSMKNDFG 244
           L AC+                                    CG +D+GR  FD M N+  
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQM-NERD 314

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACCARGEL 297
           +I     +  M+  L   GR  EA E  Q+M    IE N I +  L+SAC   G L
Sbjct: 315 VIS----WSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLL 366


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 290/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P++F    V + CAG+ D+  G+ VH  V++     D+ V ++L HMY  C G
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC-G 222

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ G  V   +     VS + +I G  + G S  A++ F  M+  GV  D +T V+ +S
Sbjct: 223 CLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 282

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+DL AL  G+ +   + K  V++ V +   L+ M+++CG +  + ++F    G     
Sbjct: 283 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 342

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            +++I+    HG G +A+ LF++M+  G  P DV F+ LL ACSH GL ++G + F+ M 
Sbjct: 343 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 402

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P ++HY C+VD+L RSG + EA   I  MP+  + +IW+TL+SAC  +    +A
Sbjct: 403 KTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMA 462

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I KR+I  +P   ++YVLLS+I A   RW   +++R+ M    ++K PG + +EL   
Sbjct: 463 ERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGH 522

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F  GD+SH + KEI E L+EM  K+++ GY P  S VL D+ +E+KE +L+ HSEKL
Sbjct: 523 IHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKL 582

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFA L  P G PIR++KNLRVC+DCH A K +S++  REIVVRD  RFHHFKD
Sbjct: 583 AIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKD 637



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 12/324 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G + ++FT   ++ A A +GDL   + +   + +     ++   N L   Y    G +  
Sbjct: 71  GAATDRFTANHLMLAYADLGDLTAARELFERIPR----RNVMSWNILFGGYIK-NGDLGG 125

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RK+FDEM ER+  +W+AM+ G   LG   +++  F  M+  G+ PDE  + +V   C  
Sbjct: 126 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 185

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  +  G+ V +++ +  ++R + + ++L  M+ +CG + +   + R +   +IVS  ++
Sbjct: 186 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 245

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   +G    A+  F  M   GV  D V FV  +S+CS    + +G++    +    G
Sbjct: 246 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKA-G 304

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           +   +    C+V M  R G + ++ E +      ++  +   +ISA    G  + A  + 
Sbjct: 305 VDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELF 363

Query: 305 KRLI--GNEPMHESNYVLLSHIYA 326
           K+++  G EP   S+   L+ +YA
Sbjct: 364 KQMMNGGAEP---SDVTFLALLYA 384


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/470 (39%), Positives = 297/470 (63%), Gaps = 3/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  +      +L+AC+G+  ++L K VH   ++    D I ++N ++ +YG C G +  
Sbjct: 461 GIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLI-LKNRIIDIYGEC-GEVCY 518

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+ + ++D V+W++M+  +A  GL  +A+ LF +M  +G+ PD + +V +L A   
Sbjct: 519 ALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAG 578

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L  GK +  F+ +        + ++L+DM++ CG ++ ALK+F     + +V WT++
Sbjct: 579 LSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAM 638

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I    MHG G +A+ +F+ MLE GV PD V+F+ LL ACSH  LVD+G+ Y D M + + 
Sbjct: 639 INATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYK 698

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P  EHY C+VD+L RSG+ +EA++FI+ MP+E   ++W  L+ AC      +LA   T
Sbjct: 699 LQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIAT 758

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            +L+  EP +  NYVL+S+++A++ +W    +IR  M ++G++K P  + IE+ N ++ F
Sbjct: 759 DKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTF 818

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAG-YVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
              D SH  S+ I+  L E+  K+++ G YV  TS VL D++EE+K D L++HSE+LAI+
Sbjct: 819 TARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAIS 878

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           F L+ T  GTP+RI KNLRVC DCH  TK +SK++ REIVVRD +RFHHF
Sbjct: 879 FGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHF 928



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 171/324 (52%), Gaps = 8/324 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ G +P+      +L A   +G L  G+ VH   +K +   D+ + NTL+ MY  C  
Sbjct: 356 MVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYS 415

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   +VFD M  +D VSW+ +I  YA+    ++AI  FR  Q  G+  D + M ++L 
Sbjct: 416 -VECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILE 474

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L ++ + K V S+  +  +   + L N +ID++ +CG+V  AL +F  ++ + IV+
Sbjct: 475 ACSGLKSISLLKQVHSYAIRNGLLDLI-LKNRIIDIYGECGEVCYALNIFEMLDKKDIVT 533

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
           WTS++   A +G   EAVALF +ML AG+ PD VA VG+L A +    + KG+E    + 
Sbjct: 534 WTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLI 593

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +  F +   +     +VDM    G +  A +   +   + + ++W  +I+A    G  K 
Sbjct: 594 RGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQ 650

Query: 300 AESITKRLI--GNEPMHESNYVLL 321
           A  I KR++  G  P H S   LL
Sbjct: 651 AIYIFKRMLETGVSPDHVSFLALL 674



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G +P+  T   VLKAC   GD   G  VHG  +K        V N LV MY  C G ++ 
Sbjct: 158 GAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKC-GLLDS 216

Query: 65  GRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             +VF+ M + RD  SW++ I G  + G+  +A+DLFR+MQ  G   +  T V VL  C 
Sbjct: 217 ALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCA 276

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
           +L  L  G+ + + + K     ++  CNAL+ M+A+CG VD AL++FR +  +  +SW S
Sbjct: 277 ELAQLNHGRELHAALLKCGTEFNIQ-CNALLVMYARCGWVDSALRVFREIGDKDYISWNS 335

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDSMK 240
           +++    +    EA+  F EM++ G  PD    V LLSA  H G +  GRE   Y    +
Sbjct: 336 MLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQR 395

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D      ++    ++DM  +   V+ +     +M I+ + + W T+I AC A+   + +
Sbjct: 396 LD----SDLQIANTLMDMYIKCYSVECSARVFDRMRIK-DHVSWTTII-ACYAQSS-RYS 448

Query: 301 ESITK 305
           E+I K
Sbjct: 449 EAIGK 453



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQ-NTLVHMYGSCE 59
           M   G S N +T   VL+ CA +  LN G+ +H A+LK   G + ++Q N L+ MY  C 
Sbjct: 256 MQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKC--GTEFNIQCNALLVMYARC- 312

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++   +VF E+ ++D +SW++M+  Y +  L  +AID F +M  +G  PD   +V++L
Sbjct: 313 GWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLL 372

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SA   LG L  G+ V ++  KQ ++  + + N L+DM+ KC  V+ + ++F  M  +  V
Sbjct: 373 SAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHV 432

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           SWT++IA  A   R  EA+  F    + G+  D +    +L ACS
Sbjct: 433 SWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 143/293 (48%), Gaps = 18/293 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHG-AVLKFQFGDDI--HVQNTLVHMYGSCEGGIEL 64
           P    Y +VL   A    ++ G+ +H  AV     GDD    +   L+ MYG C G +  
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKC-GRLPD 111

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----ISGVCPDEITMVTVLS 120
             ++FD M  R   SW+A+IG     G + +A+ ++R M+    ++G  PD  T+ +VL 
Sbjct: 112 AHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLK 171

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTIV 179
           AC   G    G  V     K  ++RS  + NAL+ M+AKCG +D AL++F  M +GR + 
Sbjct: 172 ACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVA 231

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S I+G   +G  LEA+ LF  M   G   +    VG+L  C+    ++ GRE   ++
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAAL 291

Query: 240 ---KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
                +F I         ++ M  R G V  A    +++  + + I W +++S
Sbjct: 292 LKCGTEFNI-----QCNALLVMYARCGWVDSALRVFREIG-DKDYISWNSMLS 338



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-- 206
           L   L+ M+ KCG +  A +LF  M  RT+ SW ++I      G   EAV ++  M    
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 207 --AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
             AG  PD      +L AC   G    G E    +    G+         +V M  + G 
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSE-VHGLAVKSGLDRSTLVANALVGMYAKCGL 213

Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
           +  A    + M    +   W + IS C   G    A  + +R+
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRM 256


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 290/475 (61%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FT+  VL+AC  + DL   K +H  ++K     D+ V++ L+ +Y S  G
Sbjct: 377 MFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVY-SKMG 432

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVF EM   DSV W+++I  +A+     +A+ L++ M+  G   D+ T+ +VL 
Sbjct: 433 ELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLR 492

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT L  LE+G+     + K   ++ + L NAL+DM+ KCG ++ A  +F  M  + ++S
Sbjct: 493 ACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVIS 550

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++IAGLA +G  +EA+ LFE M   G  P+ +  +G+L ACSH GLV++G  YF SM 
Sbjct: 551 WSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMN 610

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N +GI P  EHYGCM+D+L R+ ++ +  + I +M  E + + WRTL+ AC AR  + LA
Sbjct: 611 NLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLA 670

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               K ++  +P     YVLLS+IYA   RW    ++R  M KRG++K PG + IE++ +
Sbjct: 671 TYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQ 730

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+ GDKSH Q  EI   L++   ++  AGYVP T+ VL D+  E +ED+L  HSEKL
Sbjct: 731 IHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKL 790

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F ++  P    IRI KNL++C DCH   K I+++  R IV+RD  R+HHF+D
Sbjct: 791 AIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQD 845



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 160/315 (50%), Gaps = 16/315 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  +  TY  ++K C   G +  GK VH  +    +     + N L++MY      +E 
Sbjct: 280 GVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKF-NLLEE 338

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD+M ER+ VSW+ MI  Y+   L+  A+ L   M   GV P+  T  +VL AC  
Sbjct: 339 AQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACER 398

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L   K + S+I K  +   V + +ALID+++K G++ +ALK+FR M     V W S+
Sbjct: 399 LYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSI 455

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           IA  A H  G EA+ L++ M   G P D      +L AC+   L++ GR+ +   +K D 
Sbjct: 456 IAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQ 515

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----ELKL 299
            +I        ++DM C+ G +++A +FI     + + I W T+I+     G     L L
Sbjct: 516 DLILN----NALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNL 570

Query: 300 AESITKRLIGNEPMH 314
            ES+  ++ G +P H
Sbjct: 571 FESM--KVQGPKPNH 583



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 5/195 (2%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ +   M+  GV  D IT   ++  C   GA+  GK V   I     +    L N LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ K   +++A  LF  M  R +VSWT++I+  +       A+ L   M   GV P+   
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           F  +L AC    L D  + +   MK   G+   +     ++D+  + G + EA +  ++M
Sbjct: 389 FSSVLRACER--LYDLKQLHSWIMK--VGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 276 PIEANPIIWRTLISA 290
            +  + ++W ++I+A
Sbjct: 445 -MTGDSVVWNSIIAA 458


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 290/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P++F    V + CAG+ D+  G+ VH  V++     D+ V ++L HMY  C G
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC-G 284

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ G  V   +     VS + +I G  + G S  A++ F  M+  GV  D +T V+ +S
Sbjct: 285 CLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 344

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +C+DL AL  G+ +   + K  V++ V +   L+ M+++CG +  + ++F    G     
Sbjct: 345 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 404

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            +++I+    HG G +A+ LF++M+  G  P DV F+ LL ACSH GL ++G + F+ M 
Sbjct: 405 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 464

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             +G+ P ++HY C+VD+L RSG + EA   I  MP+  + +IW+TL+SAC  +    +A
Sbjct: 465 KTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMA 524

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E I KR+I  +P   ++YVLLS+I A   RW   +++R+ M    ++K PG + +EL   
Sbjct: 525 ERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGH 584

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I++F  GD+SH + KEI E L+EM  K+++ GY P  S VL D+ +E+KE +L+ HSEKL
Sbjct: 585 IHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKL 644

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFA L  P G PIR++KNLRVC+DCH A K +S++  REIVVRD  RFHHFKD
Sbjct: 645 AIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKD 699



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 12/324 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G + ++FT   ++ A A +GDL   + +   + +     ++   N L   Y    G +  
Sbjct: 133 GAATDRFTANHLMLAYADLGDLTAARELFERIPR----RNVMSWNILFGGYIK-NGDLGG 187

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RK+FDEM ER+  +W+AM+ G   LG   +++  F  M+  G+ PDE  + +V   C  
Sbjct: 188 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 247

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  +  G+ V +++ +  ++R + + ++L  M+ +CG + +   + R +   +IVS  ++
Sbjct: 248 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 307

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG   +G    A+  F  M   GV  D V FV  +S+CS    + +G++    +    G
Sbjct: 308 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKA-G 366

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           +   +    C+V M  R G + ++ E +      ++  +   +ISA    G  + A  + 
Sbjct: 367 VDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELF 425

Query: 305 KRLI--GNEPMHESNYVLLSHIYA 326
           K+++  G EP   S+   L+ +YA
Sbjct: 426 KQMMNGGAEP---SDVTFLALLYA 446


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 294/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G   N+FT   VL +C     +   + VH  V+K  F   + V ++L+ MYG   G
Sbjct: 133 MLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGK-SG 191

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RKVFD + ERD+VS +A+I GYA+LGL  +A+DLFRQ+  SG+  + +T  T+L+
Sbjct: 192 NIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLT 251

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           + + L +L  GK V   I ++ +   + L N+LIDM++KCG +  + ++F +M  R+ +S
Sbjct: 252 SLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAIS 311

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G   HG G E V LF  M E  V PD V  + +LS CSH GLVD+G + FD + 
Sbjct: 312 WNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIV 370

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +   +  I HYGC++D+L RSG++++A + I+ MP E  P IW +L+ AC     + + 
Sbjct: 371 KEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVG 430

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E + ++L+  EP +  NYV+LS+IYA    W+   ++R++M +  + K P  + I LD  
Sbjct: 431 EVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKV 490

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F   ++ H + K+I   + E+   +K AG+VP  S VL D+++E KE  L  HSEKL
Sbjct: 491 IHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKL 550

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI F L+ TPPG  I+++KNLR+C DCH+  KF+SK+Y REI +RD++RFH  KD
Sbjct: 551 AITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKD 605



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 148/277 (53%), Gaps = 5/277 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y   + AC     L  G+ VH  ++K ++   +++   L+ +Y  C G ++  R V D M
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRC-GALDDARNVLDGM 102

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ER+ VSW+AMI GY++ G   +A++LF +M  +G   +E T+ TVL++C    +++  +
Sbjct: 103 PERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVE 162

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V S + K      + + ++L+DM+ K G++ +A K+F  +  R  VS T++I+G A  G
Sbjct: 163 QVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLG 222

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEH 251
              EA+ LF ++  +G+  + V F  LL++ S    ++ G++     ++ +      +++
Sbjct: 223 LDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQN 282

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              ++DM  + G++  +      MP + + I W  ++
Sbjct: 283 --SLIDMYSKCGKLLYSRRVFDNMP-QRSAISWNAML 316


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/471 (38%), Positives = 284/471 (60%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+       + ACAGI  ++ G  +H  V    +  D+ + N LV++Y  C G  + 
Sbjct: 441 GIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARC-GISKE 499

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
               F+ +  ++ ++W+ +I G+A+ GL  +A+ +F +M  +G   +  T V+ +SA  +
Sbjct: 500 AFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASAN 559

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  ++ GK + + + K        + NALI ++ KCG ++ A   F  M  R  VSW ++
Sbjct: 560 LADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTI 619

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I   + HGRGLEA+ LF++M + G+ P DV FVG+L+ACSH GLV++G  YF SM N+ G
Sbjct: 620 ITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHG 679

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+ +HY C+VD+L R+G++  A  F+++MPI A+ ++WRTL+SAC     L++ E   
Sbjct: 680 IHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAA 739

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           K L+  EP   ++YVLLS+ YA   +W  + +IR++M  RG++K PG + IE+ N ++ F
Sbjct: 740 KHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAF 799

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
             GD+ H  + +IY  L  +  ++ K GY      +  +  +E K+     HSEKLA+AF
Sbjct: 800 FVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAF 859

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            L+  P   P+R++KNLRVCNDCH+  KF S +  REIV+RD +RFHHF +
Sbjct: 860 GLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNN 910



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 158/295 (53%), Gaps = 3/295 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PNKFTYP +L+ C   G++ LG+ +H   +K  F  D++V   L+ MY S  G
Sbjct: 336 MLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMY-SKYG 394

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +++ D + E+D VSW++MI GY +     +A++ F++MQ  G+ PD I + + +S
Sbjct: 395 WLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAIS 454

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  + A+  G  + + +     +  V + N L+ ++A+CG   +A   F ++  +  ++
Sbjct: 455 ACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGIT 514

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  +I+G A  G   EA+ +F +M +AG   +   FV  +SA ++   + +G++    + 
Sbjct: 515 WNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVI 574

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              G   + E    ++ +  + G +++A     +M  + N + W T+I+ C   G
Sbjct: 575 KT-GYTSETEISNALISLYGKCGSIEDAKMDFFEM-TKRNEVSWNTIITCCSQHG 627



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 149/290 (51%), Gaps = 3/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV P  +    +L AC       LG+ +H  V K  F  +  V N L+ +Y  C  
Sbjct: 134 MHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRS 193

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
              L  +VF +M   DSV+++ +I G+A+ G    A+ +F +MQ+SG+ PD +T+ ++L+
Sbjct: 194 -FRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLA 252

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ +G L  GK + S++ K  ++    +  +L+D++ K GD+++AL++F S +   +V 
Sbjct: 253 ACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVL 312

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W  ++          ++  +F  ML AGV P+   +  +L  C+H G +  G E   S+ 
Sbjct: 313 WNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSLT 371

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              G    +   G ++DM  + G + +A   I  M  E + + W ++I+ 
Sbjct: 372 IKNGFQSDMYVSGVLIDMYSKYGWLDKAQR-ILDMIEEKDVVSWTSMIAG 420



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+SP+  T   +L AC+ +GDL  GK +H  +LK     D  ++ +L+ +Y    G IE 
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVK-SGDIEE 297

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++FD     + V W+ M+  Y ++     + D+F +M  +GV P++ T   +L  CT 
Sbjct: 298 ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTH 357

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            G + +G+ + S   K      + +   LIDM++K G +DKA ++   +  + +VSWTS+
Sbjct: 358 TGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSM 417

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-----REYFDSM 239
           IAG   H    EA+  F+EM   G+ PD++     +SAC+    V +G     R Y    
Sbjct: 418 IAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGY 477

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             D  I      +  +V +  R G  KEA    + +      I W  LIS     G
Sbjct: 478 SADVSI------WNGLVYLYARCGISKEAFSSFEAIE-HKEGITWNGLISGFAQSG 526



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 4/298 (1%)

Query: 13  YPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           +   L+AC G G    L   +H   +         + N L+ +Y   +G +   R+VF+E
Sbjct: 44  FACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAK-KGFVRRARRVFEE 102

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +S RD+VSW A++ GYA+ GL  +A+ L+R+M  SGV P    + ++LSACT     ++G
Sbjct: 103 LSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLG 162

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + +   + KQ       + NALI ++ +C     A ++F  M     V++ ++I+G A  
Sbjct: 163 RLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQC 222

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G G  A+ +F+EM  +G+ PD V    LL+ACS  G + KG++   S     G+      
Sbjct: 223 GHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQ-LHSYLLKAGMSLDYIM 281

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
            G ++D+  +SG ++EA +         N ++W  ++ A     +L  +  I  R++ 
Sbjct: 282 EGSLLDLYVKSGDIEEALQIFDSGD-RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLA 338


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 282/493 (57%), Gaps = 21/493 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E GV P++ T   VL ACA        ++VHG VLK    D+  VQN L+ +Y    G +
Sbjct: 369 EAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARL-GDM 427

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--------------- 107
           E  R +F  +  RD VSW+ +I G    G   DA  L R+MQ  G               
Sbjct: 428 EAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTD 487

Query: 108 ---VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
              V P+ +T++T+L  C  L A   GK +  +  +  ++  + + +AL+DM+AKCG + 
Sbjct: 488 EEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLA 547

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSAC 223
            +  +F  +  R +++W  +I    MHG G EA+ALF+ M+ +    P++V F+  L+AC
Sbjct: 548 LSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAAC 607

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPI 282
           SH G+VD+G E F SMK + G+ P  + + C VD+L R+GR+ EA+  I  M P E    
Sbjct: 608 SHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVS 667

Query: 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342
            W + + AC     + L E   +RL   EP   S+YVLL +IY+    WEK +++R  M 
Sbjct: 668 AWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMR 727

Query: 343 KRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402
           +RG+ K PG + IELD  I+ F+ G+ +H +S  ++  +D +  +M+  GY P TS VL 
Sbjct: 728 QRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLH 787

Query: 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
           DI E +K   L  HSEKLAIAF LL+TPPG  IR+ KNLRVCNDCH A KFIS++  REI
Sbjct: 788 DIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREI 847

Query: 463 VVRDRHRFHHFKD 475
           V+RD  RFHHF D
Sbjct: 848 VLRDVRRFHHFVD 860



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 155/313 (49%), Gaps = 27/313 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCE 59
           M+  GV P+  T+   L AC+ +  L+LG+ +H  VLK      +  V + LV MY S E
Sbjct: 262 MVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHE 321

Query: 60  GGIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMV 116
             + + R+VFD +    R    W+AM+ GYA+ G+  +A++LF +M+  +GV P E T+ 
Sbjct: 322 -RVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIA 380

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VL AC         + V  ++ K+ +  +  + NAL+D++A+ GD++ A  +F ++  R
Sbjct: 381 GVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPR 440

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG------------------VPPDDVAFVG 218
            +VSW ++I G  + G   +A  L  EM + G                  V P++V  + 
Sbjct: 441 DVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMT 500

Query: 219 LLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           LL  C+      KG+E    +M++   +   I     +VDM  + G +  +     ++P 
Sbjct: 501 LLPGCAMLAAPAKGKEIHGYAMRH--ALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP- 557

Query: 278 EANPIIWRTLISA 290
           + N I W  LI A
Sbjct: 558 KRNVITWNVLIMA 570



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 11/278 (3%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF--GDDIHVQNTLVHMYGSCEGGIELGR 66
           + F  P   K+ A +  L   +S+HGA L+     G    V N L+  Y  C G +    
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARC-GDLTAAL 116

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
            +F+ M  RD+V+++++I           A+D  R M + G      T+V+VL AC+ L 
Sbjct: 117 ALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLA 176

Query: 127 A-LEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-----GRTI 178
             L +G+   +F  K   +        NAL+ M+A+ G VD A  LF S++     G  +
Sbjct: 177 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGV 236

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W ++++ L   GR  EA+ +  +M+  GV PD + F   L ACS   ++  GRE    
Sbjct: 237 VTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAY 296

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
           +  D  +         +VDM     RV  A      +P
Sbjct: 297 VLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVP 334



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 120/297 (40%), Gaps = 58/297 (19%)

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + NAL+  +A+CGD+  AL LF +M  R  V++ S+IA L +  R L A+    +ML  
Sbjct: 97  AVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLE 156

Query: 208 GVPPDDVAFVGLLSACSH--------------------------------------CGLV 229
           G P      V +L ACSH                                       GLV
Sbjct: 157 GHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLV 216

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRT 286
           D  +  F S+         +  +  MV +L +SGR  EA E I  M    +  + I + +
Sbjct: 217 DDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFAS 276

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTKIREVMDKR 344
            + AC     L L   +   ++ +  +  +++V   L  +YA     E+    R V D  
Sbjct: 277 ALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYAS---HERVGVARRVFD-- 331

Query: 345 GMKKIPGS-TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
               +PG    + L N +   VCG   + Q+    E L+   R   +AG VP+ + +
Sbjct: 332 ---MVPGGHRQLGLWNAM---VCG---YAQAGMDEEALELFARMEAEAGVVPSETTI 379


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 281/474 (59%), Gaps = 14/474 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G+  +   +   + ACAGI  L+ G+ +H       + DD+ + N LV +Y  C G
Sbjct: 530 MQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARC-G 588

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +      FD++  +D+VSW++++ G+A+ G   +A+++F QM  +G+  +  T  + +S
Sbjct: 589 KVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVS 648

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  ++  + +GK +   I K   +    + NALI ++AKCG +D              +S
Sbjct: 649 AAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------IS 695

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I G + HG G EA+ LFE+M +  V P+ V FVG+LSACSH GLVD+G  YF SM 
Sbjct: 696 WNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMS 755

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               ++PK EHY C+VD+L RSG +  A  F+++MPI+ + ++WRTL+SAC     + + 
Sbjct: 756 EAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIG 815

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E     L+  EP   + YVL+S++YA   +W+ + + R++M  RG+KK PG + +E+DN 
Sbjct: 816 EFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNS 875

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  GD++H ++  IYE L  +  +  + GYVP  + +L D     K+     HSE+L
Sbjct: 876 VHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERL 935

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIAF LL     TP+ + KNLRVC DCH+  K +SKI +R I+VRD +RFHHFK
Sbjct: 936 AIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFK 989



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 154/300 (51%), Gaps = 18/300 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   +L ACA +G L  GK  H   +K     DI V+ +L+ +Y  C   I+   +
Sbjct: 350 PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSD-IKTAHE 408

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
            F    + D+++ S  I               F QMQI G+ P++ T  ++L  CT LGA
Sbjct: 409 FFLCYGQLDNLNKSFQI---------------FTQMQIEGIVPNQFTYPSILKTCTTLGA 453

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
            ++G+ + + + K     +V + + LIDM+AK G +D ALK+FR +    +VSWT++IAG
Sbjct: 454 TDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAG 513

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
              H +  EA+ LF+EM + G+  D++ F   +SAC+    +D+GR+   +     G   
Sbjct: 514 YTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-IHAQSCLSGYSD 572

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +     +V +  R G+V+EA+    ++  + N + W +L+S     G  + A +I  ++
Sbjct: 573 DLSIGNALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSGFAQSGYFEEALNIFAQM 631



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 203/454 (44%), Gaps = 53/454 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIG-DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML   V  ++  +  VL+ C+G        + +H   +   F     + N L+ +Y    
Sbjct: 154 MLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFK-N 212

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   +KVF+ +  RDSVSW AMI G ++ G   +A+ LF Q+              VL
Sbjct: 213 GFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VL 258

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACT +   E GK +   + KQ  +    +CNAL+ ++++ G++  A ++F  M+ R  V
Sbjct: 259 SACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRV 318

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ S+I+GLA  G    A+ALF++M      PD V    LLSAC+  G +  G++ F S 
Sbjct: 319 SYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSY 377

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF----------------IQKMPIEA---N 280
               G+   I   G ++D+  +   +K AHEF                  +M IE    N
Sbjct: 378 AIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPN 437

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTKIR 338
              + +++  C   G   L E I  +++       + YV  +L  +YAK  + +   KI 
Sbjct: 438 QFTYPSILKTCTTLGATDLGEQIHTQVL-KTGFQFNVYVSSVLIDMYAKHGKLDHALKI- 495

Query: 339 EVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTS 398
                   +++  + ++     I  +   DK   ++  +++ + + G K    G+    S
Sbjct: 496 -------FRRLKENDVVSWTAMIAGYTQHDK-FTEALNLFKEMQDQGIKSDNIGFASAIS 547

Query: 399 -----EVLLDINEEDKEDALNKHSEKLAIAFALL 427
                + L    +   +  L+ +S+ L+I  AL+
Sbjct: 548 ACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALV 581



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 53/316 (16%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M ++GV  N  T+ ++L+ C        G  +    L F                    G
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLIDFYLAF--------------------G 111

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +     VFDEM  R    W+ +   +    L      LFR+M    V  DE     VL 
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLR 171

Query: 121 ACTDLGALEVGKWVESFIEKQMVN---RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            C+  G     ++VE    K + +    S  +CN LID++ K G +  A K+F ++  R 
Sbjct: 172 GCS--GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARD 229

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            VSW ++I+GL+ +G   EA+ LF ++              +LSAC+         E+F+
Sbjct: 230 SVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKV-------EFFE 268

Query: 238 SMKNDFGIIPK----IEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
             K   G++ K     E Y C  +V +  RSG +  A +    M  + + + + +LIS  
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMS-QRDRVSYNSLISGL 327

Query: 292 CARGELKLAESITKRL 307
             +G +  A ++ K++
Sbjct: 328 AQQGYINRALALFKKM 343


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/476 (39%), Positives = 293/476 (61%), Gaps = 14/476 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +  F LKA A   D +    +H  VL+     D+ +  TL+  Y  C G +   RK
Sbjct: 102 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKC-GDLASARK 160

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ------ISGVCPDEITMVTVLSA 121
           VFDEM+ RD  +W++++ G A+      A+ LF ++        S   P+E+T+V  LSA
Sbjct: 161 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSA 220

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV 179
           C  +G L+ G +V  F ++  ++R+V +CN+LIDM++KCG + +AL +F S+    RT+V
Sbjct: 221 CAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLV 280

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I   +MHG G +A+ LF+EM    + PD V ++ +L  C+H GLVD G   F+SM
Sbjct: 281 SYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM 339

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ +  MP  A+ ++W+TL+ A    G ++L
Sbjct: 340 R----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVEL 395

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+D 
Sbjct: 396 AELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDG 455

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  L+++  ++ + GY P TS VL DI EE+K+ AL  HSEK
Sbjct: 456 VMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEK 515

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  +R++KNLR+C DCH   K ISK Y R IV+RDR RFH F+D
Sbjct: 516 LAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFED 571


>gi|302809831|ref|XP_002986608.1| hypothetical protein SELMODRAFT_124337 [Selaginella moellendorffii]
 gi|300145791|gb|EFJ12465.1| hypothetical protein SELMODRAFT_124337 [Selaginella moellendorffii]
          Length = 487

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/473 (39%), Positives = 294/473 (62%), Gaps = 8/473 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           +K T+  +L AC+  G L  G+ +H   +   ++  D+ VQN L++MY  C G +E+ R 
Sbjct: 6   DKTTFTIILSACSTSGALAAGREIHEKFIALTEYERDLGVQNALLNMYAKC-GSLEVARD 64

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F +M  RD VS + MI  +A+ GL  D+I +FR+M + G+  D+ T  +V++AC+  GA
Sbjct: 65  IFRKMERRDQVSMNVMIAAFAQQGLGKDSIQVFREMDLEGLPQDDTTFASVITACSCCGA 124

Query: 128 LEVGKWVESFIEKQMVNRSVGLCN-----ALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           LE GK +   + + ++ R   L N     AL+ M+ KCG +++A  +F++M  +  VSW 
Sbjct: 125 LEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWN 184

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++A  A  G+G EA A        GV  D  +F+ +L ACSH G+++   ++F  M +D
Sbjct: 185 AMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSD 244

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           F ++P  E+Y CMVD+L RSGR+ +A E +  MP   + I WRTL+  C  +G L+ A S
Sbjct: 245 FDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAAS 304

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK-IPGSTLIELDNEI 361
             ++    EP + + Y LLS +Y+   + ++  ++R  M +RG++K +PG ++IE+   +
Sbjct: 305 AAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRV 364

Query: 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
           +EFV GD SH Q+ +I   LD +  ++K+AG+VP+T  V+ D+  EDKE+ L  HSEKLA
Sbjct: 365 HEFVAGDSSHPQTDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLA 424

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +AF L+ T  G P+ ++KNLRVC+DCH+A K ISK+ +R I VRD +RFH F+
Sbjct: 425 VAFGLISTKSGIPLLVLKNLRVCSDCHAAIKLISKLRSRVITVRDANRFHRFQ 477



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 21/249 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-----DDIHVQNTLVHMYGSCE 59
           G+  +  T+  V+ AC+  G L  GK +H  V++   G      ++ V+  LV MYG C 
Sbjct: 104 GLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKC- 162

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +E  + VF  M+ ++SVSW+AM+   A  G   +A    R     GV  D  + ++VL
Sbjct: 163 GTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVL 222

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNA------LIDMFAKCGDVDKALKLFRSM 173
            AC+  G LEV     ++   Q++     L  A      ++D+ A+ G +  A +L  SM
Sbjct: 223 IACSHSGMLEV-----AYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSM 277

Query: 174 N-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDK 231
                 ++W +++ G  + G    A +  E+     + P + A   LLS+  S  G  D+
Sbjct: 278 PFSPDAIAWRTLLGGCRVQGSLENAASAAEQAF--NLEPQNTAPYTLLSSLYSATGKKDE 335

Query: 232 GREYFDSMK 240
             E   SMK
Sbjct: 336 LVELRSSMK 344


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/478 (38%), Positives = 287/478 (60%), Gaps = 4/478 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV+ + +TY  V      +   +LG+ +HG V+     +D  V  +L+ MY  C G
Sbjct: 249 MVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKC-G 307

Query: 61  GIELGRKVFD---EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
            +E    +FD   + +E    +WS M+ GY + G   +A++ FR+M   GV   +  + +
Sbjct: 308 EMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTS 367

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           V SAC + G +E G+ V  F+EK        L +A++DM++K G ++ A ++FRS   + 
Sbjct: 368 VASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKN 427

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +  WT+++   A HG+G  A+ +F  M    + P+++  V +LSACSH GLV  G  YF+
Sbjct: 428 VALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFN 487

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            M+ ++GI+P  EHY CMVD+  R+G + +A  FI++  I    ++W+TL+SAC     +
Sbjct: 488 LMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHI 547

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           + A+  +++L+  E     +YVL+S++YA   +W    K+R  M +R ++K PG + I L
Sbjct: 548 EYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHL 607

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
            N ++ FV  D SH +S EIY  L+++  ++K+ GY   T  V+ DI EE +E +L  HS
Sbjct: 608 KNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHS 667

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAF ++ TP GT +RI KNLRVC DCH A KFI++  +REIVVRD +RFHHFKD
Sbjct: 668 EKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKD 725



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 163/348 (46%), Gaps = 47/348 (13%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
             +PN F    VL+ CAG+GD+  G+ +HG +L+     D+ + N ++ MY  C      
Sbjct: 121 ATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRA 180

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                   +G +    ++FDE S RD  SW+ ++ G  R G +T
Sbjct: 181 RRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTT 240

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+   +QM  +GV     T   V +    L + ++G+ +   +   ++     +  +L+
Sbjct: 241 EALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLM 300

Query: 155 DMFAKCGDVDKALKLFRSMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           DM+ KCG+++ AL +F   +  T     +W++++AG   +GR  EA+  F  ML  GVP 
Sbjct: 301 DMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPA 360

Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY------GCMVDMLCRSGRV 265
                  + SAC++ G+V++GR+         G + K+ H         +VDM  +SG +
Sbjct: 361 GQFILTSVASACANAGMVEQGRQV-------HGFVEKLGHRFDAPLASAIVDMYSKSGSL 413

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
           ++A    +    + N  +W T++ +  + G+ ++A  I  R+   + M
Sbjct: 414 EDACRIFRSAQTK-NVALWTTMLCSYASHGQGRMALEIFSRMKAEKIM 460



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 39/298 (13%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTV 118
           G+    +VFD    R   +W+++I G AR G   D +  F +M  +     P+   +  V
Sbjct: 73  GLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGV 132

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM----- 173
           L  C  LG +E G+ +  +I +  V   V LCNA++DM+AKCGD  +A + F +M     
Sbjct: 133 LRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDA 192

Query: 174 --------------------------NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                                     + R + SW ++++GL  HG   EA+   ++M+ A
Sbjct: 193 TSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRA 252

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVK 266
           GV   +  +  + +        D GR+    +     ++ +    GC ++DM C+ G ++
Sbjct: 253 GVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVV--VAVLEEDAFVGCSLMDMYCKCGEME 310

Query: 267 EAHEFIQKMP--IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322
            A     +     E     W T+++     G  + A    +R++  E +    ++L S
Sbjct: 311 SALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRML-REGVPAGQFILTS 367


>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 301/469 (64%), Gaps = 7/469 (1%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           FT+PF+LK CA      LGK +H  + K  F  D+++QN LVHMY    G + L R +FD
Sbjct: 68  FTFPFLLKCCAPSKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEF-GDLVLARSLFD 126

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            M  RD VSW++MI G     L  +AI LF +M   GV  +E T+++VL A  D GAL +
Sbjct: 127 RMPHRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEVNEATVISVLRARADSGALSM 186

Query: 131 GKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           G+ V + +E+    ++    +  AL+DM+AK G + +  K+F  +  R +  WT++I+GL
Sbjct: 187 GRKVHANLEEWGIEIHSKSNVSTALVDMYAKSGCIVR--KVFDDVVDRDVFVWTAMISGL 244

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A HG   +A+ +F +M  +GV PD+     +L+AC + GL+ +G   F  ++  +G+ P 
Sbjct: 245 ASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFMLFSDVQRRYGMKPS 304

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL- 307
           I+H+GC+VD+L R+GR+KEA +F+  MPIE + ++WRTLI AC   G+   AE + K L 
Sbjct: 305 IQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGDDDRAERLMKHLE 364

Query: 308 IGNEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVC 366
           I +    +S +Y+L S++YA   +W  K ++RE+M+K+G+ K  GS+ IE+D  ++EFV 
Sbjct: 365 IQDMRADDSGSYILTSNVYASTGKWCNKAEVRELMNKKGLVKPLGSSRIEIDGGVHEFVM 424

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD +H +++EI+  L E+  K++K GY P  SEVLL++++E+K   L  HSEKLA+A+ L
Sbjct: 425 GDYNHPEAEEIFVELAEVMDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGL 484

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ++   G+ I IVKNLR C DCH   K ISKI  R+IVVRDR RFHHFK+
Sbjct: 485 IRIGHGSTIWIVKNLRSCEDCHEFMKLISKICKRDIVVRDRIRFHHFKN 533



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 116/219 (52%), Gaps = 11/219 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH----VQNTLVHMYG 56
           ML+ GV  N+ T   VL+A A  G L++G+ VH  +   ++G +IH    V   LV MY 
Sbjct: 159 MLQCGVEVNEATVISVLRARADSGALSMGRKVHANLE--EWGIEIHSKSNVSTALVDMYA 216

Query: 57  SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G I   RKVFD++ +RD   W+AMI G A  GL  DAID+F  M+ SGV PDE T+ 
Sbjct: 217 K-SGCIV--RKVFDDVVDRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVT 273

Query: 117 TVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           TVL+AC + G +  G  + S ++++  +  S+     L+D+ A+ G + +A     +M  
Sbjct: 274 TVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPI 333

Query: 176 RT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
               V W ++I    +HG    A  L + +    +  DD
Sbjct: 334 EPDAVLWRTLIWACKVHGDDDRAERLMKHLEIQDMRADD 372


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 297/501 (59%), Gaps = 35/501 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F +  ++KACA +G ++ G+ VH   +  ++ +D  V+++LV MY  C G +   + 
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKC-GLLNSAKA 161

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP------- 110
           VFD +  ++++SW+AM+ GYA+ G   +A++LFR +           ISG          
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 221

Query: 111 ---------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
                          D + + +++ AC +L A   G+ V   +     +  V + NALID
Sbjct: 222 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALID 281

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+AKC DV  A  +F  M  R +VSWTS+I G+A HG+  +A+AL+++M+  GV P++V 
Sbjct: 282 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 341

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FVGL+ ACSH G V+KGRE F SM  D+GI P ++HY C++D+L RSG + EA   I  M
Sbjct: 342 FVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 401

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKK 334
           P   +   W  L+SAC  +G  ++   I   L+ +  + + S Y+LLS+IYA    W K 
Sbjct: 402 PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKV 461

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGY 393
           ++ R  + +  ++K PG + +E+  E   F  G+ SH   ++I+ +L ++  +M+ + GY
Sbjct: 462 SEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGY 521

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP TS +L D++E++KE  L  HSE+ A+A+ LLK  PGTPIRIVKNLRVC DCH   K 
Sbjct: 522 VPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKH 581

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
           IS+I  REI+VRD  R+HHFK
Sbjct: 582 ISEITEREIIVRDATRYHHFK 602



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 43/350 (12%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y   L+ CA    L   K++H  ++K        + NTLV++YG C G      +VFDEM
Sbjct: 6   YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC-GAASHALQVFDEM 64

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVG 131
             RD ++W++++    +  LS   + +F  +  S    PD+     ++ AC +LG+++ G
Sbjct: 65  PHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHG 124

Query: 132 KWVE-SFIEKQMVNRSVGLCNALIDMFAKCGDVD-------------------------- 164
           + V   FI  +  N  V + ++L+DM+AKCG ++                          
Sbjct: 125 RQVHCHFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183

Query: 165 -----KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVG 218
                +AL+LFR +  + + SWT++I+G    G+GLEA ++F EM    V   D +    
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 243

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           ++ AC++      GR+    +    G    +     ++DM  +   V  A +   +M   
Sbjct: 244 IVGACANLAASIAGRQ-VHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR-H 301

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
            + + W +LI      G+ + A ++   ++  G +P +E  +V L  IYA
Sbjct: 302 RDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP-NEVTFVGL--IYA 348


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 296/475 (62%), Gaps = 3/475 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   G+ P+ ++    L AC  I    LG  +HG ++K    +D  VQN L+ MY  C G
Sbjct: 592  MQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKC-G 649

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +    K+F+++ E+  V+W++MI G+++ G S +AI LF QM ++ V  D++T ++V+ 
Sbjct: 650  FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 709

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            AC+ LG LE GKWV   +    + +   L  AL DM++KCG++  A  +F  M+ R+IVS
Sbjct: 710  ACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS 769

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W+ +IAG  MHG+    ++LF +ML +G+ P+D+ F+ +LSACSH G V++G+ YF+SM 
Sbjct: 770  WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM- 828

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++FG+ PK +H+ CMVD+L R+G +  A++ I  +P  AN  IW  L++ C     + + 
Sbjct: 829  SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDII 888

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            +SI K L+  +      Y LLS+IYA+   W+K  K+R +M  +G++K+PG + IE+D +
Sbjct: 889  KSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKK 948

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            IY F  GD SH Q+K+IY  L+     +    Y       ++  ++ +KE+ +  HSEKL
Sbjct: 949  IYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKL 1008

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            AIAF ++ T PGT +RI KNLRVC DCHS  K  SKI  REI++RD +RFH F++
Sbjct: 1009 AIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRN 1063



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 167/319 (52%), Gaps = 13/319 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGK--------SVHGAVLKFQFGDDI-HVQNTL 51
           M+   V P+  T   V +AC+ +G L LG+        SVHG V++     ++  +   L
Sbjct: 482 MISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPAL 541

Query: 52  VHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD 111
           + +Y    G +    KVF+ + E+  +SW+ +I  + R G   +A+ LF QMQ  G+ PD
Sbjct: 542 MELYADT-GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600

Query: 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
             ++ + LSAC  +   ++G  +  +I K   N +  + NALIDM+AKCG V  A K+F 
Sbjct: 601 SYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFE 659

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
            +  +++V+W S+I G + +G  +EA+ LF++M    V  D + F+ ++ ACSH G ++K
Sbjct: 660 KIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEK 719

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           G+     +   +G+         + DM  + G ++ AH    +M  E + + W  +I+  
Sbjct: 720 GKWVHHKLIM-YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGY 777

Query: 292 CARGELKLAESITKRLIGN 310
              G++    S+  +++G+
Sbjct: 778 GMHGQINATISLFNQMLGS 796



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 115/226 (50%), Gaps = 24/226 (10%)

Query: 84  IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW--------VE 135
           +GG  + G +++ +D+F QM    V PD +TM++V  AC++LG+L +G+         V 
Sbjct: 465 VGG--KNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVH 522

Query: 136 SFIEKQMVNRSVG-LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            F+ ++ ++  +  L  AL++++A  G++    K+F ++  +TI+SW ++I+    +G+ 
Sbjct: 523 GFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQP 582

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY-- 252
            EA+ LF +M   G+ PD  +    LSAC        G +         G I K  ++  
Sbjct: 583 EEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI-------HGYIIKTGNFND 635

Query: 253 ---GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                ++DM  + G V  A++  +K+  E + + W ++I      G
Sbjct: 636 FVQNALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNG 680


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/495 (38%), Positives = 301/495 (60%), Gaps = 42/495 (8%)

Query: 20  CAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-------------------- 59
           CA + DL  G+  HG  +K  F   + V N L+ MYG C                     
Sbjct: 121 CAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSW 180

Query: 60  ----------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GV 108
                      G++ GR+VFDEM ER+ V+W+ M+ GY   G + + ++L  +M    G 
Sbjct: 181 TVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGH 240

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV-------NRSVGLCNALIDMFAKCG 161
             + +T+ ++LSAC   G L +G+WV  +  K+ +          V +  AL+DM+AKCG
Sbjct: 241 GLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCG 300

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           ++D ++K+FR M  R +V+W ++ +GLAMHG+G   + +F EM+   V PDD+ F  LLS
Sbjct: 301 NIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLS 359

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
           ACSH G+VD+G   F S++  +G+ PK++HY CMVD+L R+GR++EA   +++MP+  N 
Sbjct: 360 ACSHLGMVDEGWRCFHSLQF-YGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNE 418

Query: 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341
           ++  +L+ +C   G+L++AE I + LI   P H    +L+S++Y    R +    +R  +
Sbjct: 419 VVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSL 478

Query: 342 DKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL 401
             RG++KIPG + I +++ ++ F  GD+SH ++KE+Y  L+E+  +++ AGYVP  S ++
Sbjct: 479 RNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLV 538

Query: 402 --LDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYN 459
              + + E+KE AL  HSEKLA+ F LL+T P TP+ + KNLR+C DCHSA K +SK+Y+
Sbjct: 539 SPSEGDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYD 598

Query: 460 REIVVRDRHRFHHFK 474
           REI++RDR+RFH FK
Sbjct: 599 REIIIRDRNRFHQFK 613



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 166/391 (42%), Gaps = 69/391 (17%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE- 71
            +L+  A    L+ G+ +H  +     +     ++ N L   Y S  G I   +K+FDE 
Sbjct: 11  LLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYAS-SGEIATAQKLFDEI 69

Query: 72  -MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
            +S++D+V W+ ++  ++R GL  +++ LF +M+   V  D +++V +   C  L  L  
Sbjct: 70  PLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRF 129

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G+       K     SV +CNAL+DM+ KCG V +  ++F+++  +++VSWT V+  L  
Sbjct: 130 GEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTL-- 187

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
                                  V + GL           +GRE FD M         + 
Sbjct: 188 -----------------------VKWEGL----------KRGREVFDEMPER-----NVV 209

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEA----NPIIWRTLISACCARGELKLAESI--- 303
            +  MV     +G  +E  E + +M        N +   +++SAC   G L +   +   
Sbjct: 210 AWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVY 269

Query: 304 ---TKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
                 ++G E  ++   V   L  +YAK    +   K+  +M KR +            
Sbjct: 270 ALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTW--------- 320

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           N ++    G   H + + + +M  EM R++K
Sbjct: 321 NALFS---GLAMHGKGRMVIDMFPEMVREVK 348



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFG-----DDIHVQNTLVHMYGSCEGG 61
           N  T   +L ACA  G+L +G+ VH   LK     G     D + V   LV MY  C G 
Sbjct: 243 NFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKC-GN 301

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           I+   KVF  M +R+ V+W+A+  G A  G     ID+F +M +  V PD++T   +LSA
Sbjct: 302 IDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEM-VREVKPDDLTFTALLSA 360

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVS 180
           C+ LG ++ G      ++   +   V     ++D+  + G +++A  L R M      V 
Sbjct: 361 CSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVV 420

Query: 181 WTSVIAGLAMHGR 193
             S++   ++HG+
Sbjct: 421 LGSLLGSCSVHGK 433


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 283/475 (59%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++ GV  +  TY  V+  C  I DL LG  VH  +LK     D+ V + LV M+G C G
Sbjct: 218 MVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKC-G 276

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   RKVFD +  R+ V W++++  Y + G   + ++L   M   G   +E T   +L+
Sbjct: 277 DVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLN 336

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   + AL  G  + + +EK  +   V + NALI+M++KCG +D +  +F  M  R I++
Sbjct: 337 AFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIIT 396

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG G +A+ LF++ML AG  P+ V FVG+LSAC+H  LV++G  Y + + 
Sbjct: 397 WNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLM 456

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             F + P +EHY C+V +LCR+G ++EA  F++   ++ + + WR L++AC       L 
Sbjct: 457 KHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLG 516

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
             I + ++  +P     Y LLS++YAK   W+  T IR++M +R +KK PG + IE+ N 
Sbjct: 517 TKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNA 576

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F     +H +  +IY  +  +   +K+ GYVP    VL D+ +E KE  LN HSEKL
Sbjct: 577 VHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKL 636

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+K P   PIR++KNLR+C DCH+A K ISK+ NR I+VRD  RFHHF+D
Sbjct: 637 AIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRD 691



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 19/353 (5%)

Query: 21  AGIGDLNLGKSVHGAVLKFQFGDDIH-------VQ-NTLVHMYGSCEGGIELGRKVFDEM 72
           A   +LN GKS+H  +L        H       +Q N+L+++Y  C   + L R +FDEM
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSK-LRLARYLFDEM 81

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
           S R  VS++ ++GGY   G   + + LF+ M  S   P+E    TVLSAC   G +  G 
Sbjct: 82  SLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGM 141

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-----IVSWTSVIAG 187
               F+ K  +     + ++L+ M++KC  VD AL++  S +G          + SV+  
Sbjct: 142 QCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNA 201

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           L   GR  EAV +   M++ GV  D V +V ++  C     +  G +    +    G+  
Sbjct: 202 LVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKG-GLTF 260

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +     +VDM  + G V  A +    +    N ++W +L++A    GE +   ++   +
Sbjct: 261 DVFVGSMLVDMFGKCGDVLSARKVFDGLQ-NRNVVVWTSLMTAYLQNGEFEETLNLLSCM 319

Query: 308 IGNEPM-HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK--IPGSTLIEL 357
                M +E  + +L + +A +        +   ++K G+K   I G+ LI +
Sbjct: 320 DREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINM 372



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 10/315 (3%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
            PN++ +  VL ACA  G +  G   HG + KF       V+++LVHMY  C   ++L  
Sbjct: 118 QPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKC-FHVDLAL 176

Query: 67  KVFDEM-----SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +V +       ++ D+  +++++      G   +A+++  +M   GV  D +T V+V+  
Sbjct: 177 QVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGL 236

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           C  +  L +G  V + + K  +   V + + L+DMF KCGDV  A K+F  +  R +V W
Sbjct: 237 CGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVW 296

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           TS++     +G   E + L   M   G   ++  F  LL+A +    +  G +   +   
Sbjct: 297 TSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVE 355

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
             GI  ++     +++M  + G +  +++    M    + I W  +I      G  K A 
Sbjct: 356 KLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQHGLGKQAL 414

Query: 302 SITKRLI--GNEPMH 314
            + + ++  G  P H
Sbjct: 415 LLFQDMLSAGECPNH 429


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/473 (39%), Positives = 282/473 (59%), Gaps = 1/473 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  P++      + +C     L+ G+ +H A        D+   N +++MYG C G
Sbjct: 133 MCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKC-G 191

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I     VF  M E++ +SWS MI  + +  L+ +A+  F+ MQ  G+  D IT V+VL 
Sbjct: 192 SIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLD 251

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A T +GALE+GK +   I    ++ S+ + N L++M+ KCG  D A  +F SM  + +VS
Sbjct: 252 AYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVS 311

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++A    +GR  EA+ALF+ M   GV P+D+ FV +L  CSH G       +F  M+
Sbjct: 312 WNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMR 371

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            DFGI P+  H+GC++DML RSG+++EA E IQ MP+ A+ ++W +L+ AC    +   A
Sbjct: 372 QDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRA 431

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +     EP   + Y++LS++YA L +W++  K+R+ M++ G++K  G + IE+D +
Sbjct: 432 ARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQ 491

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++EFV GD  H     I++ L  +  +M+  GY P    V+  + EE+K++ L  HSEKL
Sbjct: 492 VHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKL 551

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           A+AF +  TPP TP+ IVKNLRVC+DCHSA KFIS +  R I VRD +RFHHF
Sbjct: 552 AVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHF 604



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 144/325 (44%), Gaps = 44/325 (13%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +++ CAG   L  G+ +H  +          + N LV MYG C G +   ++VFD M  +
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKC-GSLVEAKRVFDAMQHK 105

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +  SW+ ++ G+ + G   +AI LF +M   G  PD + ++  + +C    AL  G+ + 
Sbjct: 106 NVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIH 165

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           S      ++  +   NA+I+M+ KCG + +A  +F  M  + ++SW+++IA    +    
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELAD 225

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSH------------------------------ 225
           EA+  F+ M + G+  D + +V +L A +                               
Sbjct: 226 EALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLV 285

Query: 226 -----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA- 279
                CG  D  R+ FDSM     +   +  +  M+    ++GR +EA      M +E  
Sbjct: 286 NMYGKCGSPDDARDVFDSM-----VEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGV 340

Query: 280 --NPIIWRTLISACCARGELKLAES 302
             N I + T++  C   G+ K A S
Sbjct: 341 RPNDITFVTILYCCSHSGKFKDAVS 365



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +A+DL  Q   +G   D   +  ++  C    ALE G+ +  +++   ++R   L N L+
Sbjct: 27  EAVDLLEQSGAAGGTGD---LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLV 83

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+ KCG + +A ++F +M  + + SWT ++AG    GRG+EA+ LF  M + G  PD V
Sbjct: 84  DMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRV 143

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
           A +  + +C     + +GRE   S     G+   +     +++M  + G + EA     +
Sbjct: 144 ALLKFIDSCGAAKALSQGRE-IHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTR 202

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH--ESNYVLLSHIYAKL--LR 330
           MP E N I W T+I+A C + EL     +  +L+  E M      YV +   Y  +  L 
Sbjct: 203 MP-EKNVISWSTMIAAFC-QNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALE 260

Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIEL 357
             K   +R V        + G+TL+ +
Sbjct: 261 LGKALHVRIVYAGLDTSIVVGNTLVNM 287


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 279/470 (59%), Gaps = 31/470 (6%)

Query: 28  LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC----------------------------- 58
           LG  VH   +K     D+ V+N LVH YG                               
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 59  --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
              G + + R+VFDEM  RD +SWS ++GGY +      A+ +FR M   GV P++  +V
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           T LSA   LG LE GK+V + +++  +   + +  AL+DM+AKCG V  A ++F  M  R
Sbjct: 284 TALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRR 343

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            + +W ++I GLA HG G +AV LFE  +  G+ P +V FVG+L+ CS  GLV +GR YF
Sbjct: 344 DVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYF 403

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +   + I P++EHYGCMVD+L R+G V EA E I+ M I  +P++W T++S+C   G 
Sbjct: 404 KLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGL 463

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
           + L  S+  +LI  +P H   YVLLS IYAK  +W++  ++R++M  RG  K  G +L+E
Sbjct: 464 VDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLME 523

Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
              ++++F+ GD  H  S +IY+ LD + +++ +AGYVP  S VL DI EE+K  A+  H
Sbjct: 524 AHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVH 583

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRD 466
           SE+LAIA+  +    G+PIRIVKNLRVC DCH  +K ++ ++ REI+VRD
Sbjct: 584 SERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E GV PN+      L A A +G L  GK VH  V +      ++V   LV MY  C G
Sbjct: 270 MVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKC-G 328

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + + R+VFD M  RD  +W+AMI G A  GL  DA++LF +    G+ P  +T V VL+
Sbjct: 329 CVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLN 388

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
            C+  G +  G ++ +  +EK  +   +     ++D+  + G V +A++L   M+     
Sbjct: 389 GCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDP 448

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
           V W ++++    HG     V++  +++E  + P    +  LLS
Sbjct: 449 VLWGTILSSCKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLS 489


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 285/473 (60%), Gaps = 5/473 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y  +L++C     +  GK +H  V    FG D  +   LV++Y  C+  +   
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDS-LSSA 129

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD + + +   W+ +I GYA  G    A+ L+ QM   G+ PD  T   VL AC  L
Sbjct: 130 RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWT 182
            A+E G+ +   + +    + V +  ALIDM+AKCG V  A ++F  +  R    +VSW 
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWN 249

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G AMHG   EA+ LFEEM      PD + FVG+LSACSH GL+++G  +F++M  D
Sbjct: 250 AMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRD 308

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + I P ++HY CMVD+L  SGR+ EA+  I +M +  +  +W  L+++C     ++L E 
Sbjct: 309 YKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEI 368

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             +RLI  EP    NYV+LS+IYA+  +WE   K+R++M  R +KK    + IE+ N+++
Sbjct: 369 ALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 428

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F+ GD SH  S EIY  L+ +G  MK+AGY P+T  V  D+ +++K + +  HSE+LAI
Sbjct: 429 AFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAI 488

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF L+ TPPGT + I KNLR+C DCH A KFISKI  REI VRD +R+HHFKD
Sbjct: 489 AFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKD 541



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 11/227 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +YG+ P+ FT+PFVLKACA +  +  G+ +H  V++  +  D+ V   L+ MY  C G
Sbjct: 167 MFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC-G 225

Query: 61  GIELGRKVFDEMSERDS---VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
            +   R+VFD++  RD+   VSW+AMI GYA  G +T+A+DLF +M      PD IT V 
Sbjct: 226 CVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAK-PDHITFVG 284

Query: 118 VLSACTDLGALEVGKWV--ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           VLSAC+  G LE G W+  E+ I    ++ +V     ++D+    G +D+A  L   M  
Sbjct: 285 VLSACSHGGLLEEG-WMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKV 343

Query: 176 RTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
                 W +++    +H          E ++E  + PDD     +LS
Sbjct: 344 LPDSGVWGALLNSCKIHANVELGEIALERLIE--LEPDDAGNYVILS 388


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/470 (39%), Positives = 290/470 (61%), Gaps = 3/470 (0%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+FT+  VL +C     L LGK +HG ++K+ +   I V ++L+ MY    G I+  R+
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA-GQIKEARE 209

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F+ + ERD VS +A+I GYA+LGL  +A+++F ++   G+ P+ +T  ++L+A + L  
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           L+ GK     + ++ +     L N+LIDM++KCG++  A +LF +M  RT +SW +++ G
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329

Query: 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
            + HG G E + LF  M  E  V PD V  + +LS CSH  + D G   FD M   ++G 
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGT 389

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            P  EHYGC+VDML R+GR+ EA EFI++MP +    +  +L+ AC     + + ES+ +
Sbjct: 390 KPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGR 449

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           RLI  EP +  NYV+LS++YA   RW     +R +M ++ + K PG + I+ +  ++ F 
Sbjct: 450 RLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 509

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
             D++H + +E+   + E+  KMK+AGYVP  S VL D++EE KE  L  HSEKLA+ F 
Sbjct: 510 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFG 569

Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L+ T  G PIR+ KNLR+C DCH+  K  SK++ RE+ +RD++RFH   D
Sbjct: 570 LIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVD 619



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 150/277 (54%), Gaps = 5/277 (1%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           Y  +L AC     L  G+ VH  ++K ++    +++  L+  YG C+  +E  RKV DEM
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC-LEDARKVLDEM 113

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            E++ VSW+AMI  Y++ G S++A+ +F +M  S   P+E T  TVL++C     L +GK
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGK 173

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            +   I K   +  + + ++L+DM+AK G + +A ++F  +  R +VS T++IAG A  G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEH 251
              EA+ +F  +   G+ P+ V +  LL+A S   L+D G++ +   ++ +      +++
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
              ++DM  + G +  A      MP E   I W  ++
Sbjct: 294 --SLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAML 327


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/475 (39%), Positives = 291/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P   +    L ACA +GDL  G+ +H   ++     ++ V N+L+ MY  C+ 
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    +F ++  R  VSW+AMI G+A+ G   DA++ F QM+   V PD  T V+V++
Sbjct: 388 -VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A  +L      KW+   + +  ++++V +  AL+DM+AKCG +  A  +F  M+ R + +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G   HG G  A+ LFEEM +  + P+ V F+ ++SACSH GLV+ G + F  MK
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ I   ++HYG MVD+L R+GR+ EA +FI +MP++    ++  ++ AC     +  A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   +RL    P     +VLL++IY     WEK  ++R  M ++G++K PG +++E+ NE
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G  +H  SK+IY  L+++   +K+AGYVP T+ ++L +  + KE  L+ HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTN-LVLGVENDVKEQLLSTHSEKL 745

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AI+F LL T  GT I + KNLRVC DCH+ATK+IS +  REIVVRD  RFHHFK+
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 153/290 (52%), Gaps = 3/290 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V P  + + ++LK C    +L +GK +HG ++K  F  D+     L +MY  C   +   
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ-VNEA 189

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVFD M ERD VSW+ ++ GY++ G++  A+++ + M    + P  IT+V+VL A + L
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             + VGK +  +  +   +  V +  AL+DM+AKCG ++ A +LF  M  R +VSW S+I
Sbjct: 250 RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
                +    EA+ +F++ML+ GV P DV+ +G L AC+  G +++GR +   +  + G+
Sbjct: 310 DAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGL 368

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +     ++ M C+   V  A     K+      + W  +I      G
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQ-SRTLVSWNAMILGFAQNG 417



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 163/333 (48%), Gaps = 44/333 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  + P+  T   VL A + +  +++GK +HG  ++  F   +++   LV MY  C G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC-G 285

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R++FD M ER+ VSW++MI  Y +     +A+ +F++M   GV P +++++  L 
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC DLG LE G+++     +  ++R+V + N+LI M+ KC +VD A  +F  +  RT+VS
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--------------- 225
           W ++I G A +GR ++A+  F +M    V PD   +V +++A +                
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 226 --------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
                               CG +   R  FD M         +  +  M+D     G  
Sbjct: 466 RSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER-----HVTTWNAMIDGYGTHGFG 520

Query: 266 KEAHEF---IQKMPIEANPIIWRTLISACCARG 295
           K A E    +QK  I+ N + + ++ISAC   G
Sbjct: 521 KAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 145/307 (47%), Gaps = 12/307 (3%)

Query: 6   VSPNKFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGI 62
           +  N + +P   +L+ C+ + +L   + +   V K     +   Q  LV ++  C  G +
Sbjct: 31  IPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLF--CRYGSV 85

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           +   +VF+ +  + +V +  M+ G+A++     A+  F +M+   V P       +L  C
Sbjct: 86  DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            D   L VGK +   + K   +  +     L +M+AKC  V++A K+F  M  R +VSW 
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWN 205

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKN 241
           +++AG + +G    A+ + + M E  + P  +  V +L A S   L+  G+E    +M++
Sbjct: 206 TIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS 265

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
            F  +  I     +VDM  + G ++ A +    M +E N + W ++I A       K A 
Sbjct: 266 GFDSLVNIS--TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAM 322

Query: 302 SITKRLI 308
            I ++++
Sbjct: 323 LIFQKML 329


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 296/475 (62%), Gaps = 3/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ ++    L AC  I    LG  +HG ++K    +D  VQN L+ MY  C G
Sbjct: 395 MQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKC-G 452

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    K+F+++ E+  V+W++MI G+++ G S +AI LF QM ++ V  D++T ++V+ 
Sbjct: 453 FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 512

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ LG LE GKWV   +    + +   L  AL DM++KCG++  A  +F  M+ R+IVS
Sbjct: 513 ACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS 572

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+ +IAG  MHG+    ++LF +ML +G+ P+D+ F+ +LSACSH G V++G+ YF+SM 
Sbjct: 573 WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM- 631

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           ++FG+ PK +H+ CMVD+L R+G +  A++ I  +P  AN  IW  L++ C     + + 
Sbjct: 632 SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDII 691

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +SI K L+  +      Y LLS+IYA+   W+K  K+R +M  +G++K+PG + IE+D +
Sbjct: 692 KSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKK 751

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IY F  GD SH Q+K+IY  L+     +    Y       ++  ++ +KE+ +  HSEKL
Sbjct: 752 IYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKL 811

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF ++ T PGT +RI KNLRVC DCHS  K  SKI  REI++RD +RFH F++
Sbjct: 812 AIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRN 866



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 166/291 (57%), Gaps = 8/291 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG--SCEGGIELGR 66
           + F +P VLKAC+G GDL++G  VHG V+K  F  D  V+ +L+ MYG  SC   ++   
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSC---LDDAC 155

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K FD M  RD V+WS+++  + + G +++ +D+F QM    V PD +TM++V  AC++LG
Sbjct: 156 KAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELG 215

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           +L +G+ V  ++ ++ +  +  L N+LI M+ K GD+  A +LF ++  R    WT +I+
Sbjct: 216 SLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMIS 275

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
                G   EA+ +F +M E  + P+ V  VG+L AC+  G V +GR     +     + 
Sbjct: 276 CYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRR-AMD 334

Query: 247 PKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           P+++  G  ++++   +G +++ H+  + +  E   + W TLIS     G+
Sbjct: 335 PELDFLGPALMELYADTGNLRDCHKVFETIK-EKTILSWNTLISIFTRNGQ 384



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 168/311 (54%), Gaps = 5/311 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI-HVQNTLVHMYGSCE 59
           M E+ + PN+ T   VL ACA +G +  G+SVHG V++     ++  +   L+ +Y    
Sbjct: 293 MQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYAD-T 351

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +    KVF+ + E+  +SW+ +I  + R G   +A+ LF QMQ  G+ PD  ++ + L
Sbjct: 352 GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSL 411

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  +   ++G  +  +I K   N +  + NALIDM+AKCG V  A K+F  +  +++V
Sbjct: 412 SACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLV 470

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W S+I G + +G  +EA+ LF++M    V  D + F+ ++ ACSH G ++KG+     +
Sbjct: 471 TWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKL 530

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
              +G+         + DM  + G ++ AH    +M  E + + W  +I+     G++  
Sbjct: 531 IM-YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQINA 588

Query: 300 AESITKRLIGN 310
             S+  +++G+
Sbjct: 589 TISLFNQMLGS 599



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 158/301 (52%), Gaps = 15/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V P+  T   V +AC+ +G L LG+SVHG V++ +   +  + N+L+ MYG   G
Sbjct: 192 MISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKL-G 250

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    ++F+ +  R +  W+ MI  Y + G   +A+++F +MQ   + P+++TMV VL 
Sbjct: 251 DLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLC 310

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVG-LCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC  LG ++ G+ V  F+ ++ ++  +  L  AL++++A  G++    K+F ++  +TI+
Sbjct: 311 ACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTIL 370

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+    +G+  EA+ LF +M   G+ PD  +    LSAC        G +     
Sbjct: 371 SWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI---- 426

Query: 240 KNDFGIIPKIEHY-----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
               G I K  ++       ++DM  + G V  A++  +K+  E + + W ++I      
Sbjct: 427 ---HGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQN 482

Query: 295 G 295
           G
Sbjct: 483 G 483



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM------QISGVCPDEI 113
           G  E  ++VFD   + DS  W  +I  Y   G   +A+ L+ +M      QIS       
Sbjct: 47  GIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQIS-----NF 101

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
              +VL AC+  G L VG  V   + K        +  +L+ M+ +   +D A K F +M
Sbjct: 102 VFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTM 161

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             R +V+W+S++     +G+  E + +F +M+   V PD V  + +  ACS  G +  GR
Sbjct: 162 PIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGR 221

Query: 234 E 234
            
Sbjct: 222 S 222


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/476 (39%), Positives = 289/476 (60%), Gaps = 8/476 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS-CE 59
           M E GV+PN FTY  +L A       +L   +H  V+K  +     V   L+  Y   C 
Sbjct: 399 MREDGVAPNDFTYSTILTASVA----SLPPQIHAQVIKTNYECTSIVGTALLASYSKLCN 454

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
              E    +F  + ++D VSWSAM+  YA+ G S  A ++F +M + G+ P+E T+ +V+
Sbjct: 455 --TEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVI 512

Query: 120 SACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            AC    A +++G+   +   K   + ++ + +AL+ M+A+ G ++ A  +F     R +
Sbjct: 513 DACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDL 572

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSW S+++G A HG   +A+ +F +M   G+  D V F+ ++  C+H GLV++G+ YFDS
Sbjct: 573 VSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDS 632

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M  D+GI P +EHY CMVD+  R+G++ EA   I+ M   A P++WRTL+ AC     ++
Sbjct: 633 MARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVE 692

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L +   ++L+  EP   + YVLLS+IY+   +W++K ++R++MD + +KK  G + I++ 
Sbjct: 693 LGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIK 752

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
           N+++ F+  DKSH  S++IY  L  M  K+K+ GY P TS  L ++ EE KE  L  HSE
Sbjct: 753 NKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSE 812

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +LA+AF L+ TPPG P+ I KNLRVC DCH+  K +SKI +REIV+RD  RFHHF 
Sbjct: 813 RLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFN 868



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 158/294 (53%), Gaps = 5/294 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74
           VLK C  + D  LGK +HG  ++      D+ V  +LV MY      ++ GRKVF+ M +
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVD-GRKVFEAMPK 167

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV 134
           R+ V+W++++ GY + G  +D ++LF +M+  GV P+ +T  +VLS     G +++G+ V
Sbjct: 168 RNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRV 227

Query: 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRG 194
            +   K     +V +CN+L++M+AKCG V++A  +F  M  R +VSW +++AGL ++G  
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHD 287

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYG 253
           LEA+ LF +   +        +  ++  C++   +   R+   S +K  F     +    
Sbjct: 288 LEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV--MT 345

Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            ++D   ++G++  A +    M    N + W  +I+ C   G++ LA ++  R+
Sbjct: 346 ALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN  T+  VL   A  G ++LG+ VH   +KF     + V N+L++MY  C G
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKC-G 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF  M  RD VSW+ ++ G    G   +A+ LF   + S     + T  TV+ 
Sbjct: 255 LVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIK 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
            C ++  L + + + S + K+  +    +  AL+D ++K G +  AL +F  M+G + +V
Sbjct: 315 LCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVV 374

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           SWT++I G   +G    A ALF  M E GV P+D  +  +L+A
Sbjct: 375 SWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/426 (40%), Positives = 279/426 (65%), Gaps = 2/426 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           +T++  Y  C G ++  R+VF E  E+D V W+AM+ GYA+ G   DA+ LF +M +  +
Sbjct: 260 STIIAAYCQC-GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            PD  T+ +V+S+C  L +L  G+ V        +N ++ + +ALIDM++KCG +D A  
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  R +VSW ++I G A +G   +A+ LFE ML+    PD+V F+G+LSAC HC  
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +++G+EYFDS+ N  G+ P ++HY CMV++L R+GR+++A   I+ M  + + +IW TL+
Sbjct: 439 IEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           S C  +G++  AE   + L   +P     Y++LS++YA + RW+    +R +M  + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
             G + IE+DNE++ F   D++H +S++IYE L+ +  K+++ G+ P T+ VL D+ E++
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDE 618

Query: 409 KEDALNKHSEKLAIAFALLKTPPG-TPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           K  ++  HSEKLA+AF L+K P G +PIRI+KN+R+CNDCH   KF S+I  R+I++RD 
Sbjct: 619 KFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDS 678

Query: 468 HRFHHF 473
           +RFHHF
Sbjct: 679 NRFHHF 684



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 48/313 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P ++T   +L A A + DL  GK +HG+++   F  ++ + N L  MY  C G
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC-G 204

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD +++++ VSW+ MI GYA+ G     I L  QM++SG  PD++TM T+++
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A                                   + +CG VD+A ++F     + IV 
Sbjct: 265 A-----------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREY 235
           WT+++ G A +GR  +A+ LF EML   + PD      ++S+C+     H G    G+  
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              + N+  +         ++DM  + G + +A      MP   N + W  +I  C   G
Sbjct: 350 LAGLNNNLLV------SSALIDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNG 402

Query: 296 ELKLAESITKRLI 308
             K A  + + ++
Sbjct: 403 HDKDALELFENML 415



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 150/303 (49%), Gaps = 13/303 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F +  +L   A  G L   +++   +LK     DI   N L+  Y    G I+  +  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLK----RDIFSWNALLSAYAK-SGSIQNLKAT 111

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD M  RDSVS++  I G++      ++++LF++MQ  G  P E T+V++L+A   L  L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDL 171

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             GK +   I  +    +V + NAL DM+AKCG++++A  LF  +  + +VSW  +I+G 
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A +G+  + + L  +M  +G  PD V    +++A   CG VD+ R  F   K        
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KD 286

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITK 305
           I  +  M+    ++GR ++A     +M    IE +     +++S+C     L   +++  
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 306 RLI 308
           + I
Sbjct: 347 KSI 349


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/431 (43%), Positives = 277/431 (64%), Gaps = 7/431 (1%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N LV MY  C G I+  +++FDE  +R+ V ++ ++  YAR GL+ +A+ +  +M   G 
Sbjct: 230 NALVDMYMKC-GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 288

Query: 109 CPDEITMVTVLSACTDLGALEVGK-----WVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
            PD +TM++ +SA   L  L  GK     WV ++IEK  +   + L  AL+DMFA+CGD 
Sbjct: 289 RPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDP 348

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A+++F  M  R + +WT+ I  +AM G G  A  LF +ML  GV PD V FV +L+AC
Sbjct: 349 QSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTAC 408

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SH G V++G   F S+  D GI P+IEHYGCMVD+L R+G ++EA + I+ MP+E N ++
Sbjct: 409 SHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV 467

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           W +L++AC     +++A    +R+    P     +VLLS+IYA   +W    ++R  + +
Sbjct: 468 WGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLRE 527

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
           +G++K+PGS+ ++++  I+EF  GD+SH +   I  ML EM  +   AG++P  S VLLD
Sbjct: 528 KGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLD 587

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           ++E++KE  L++HSEKLAIAF L+ T    PIR+VKNLR+C+DCHS  K  S IYNREI+
Sbjct: 588 VDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREII 647

Query: 464 VRDRHRFHHFK 474
           VRD +RFH F+
Sbjct: 648 VRDNNRFHFFR 658



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 57/317 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV+PN +T+PFVL  C  I     G  VHG+V+K    +D+ +QN L+H Y  C G
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAEC-G 180

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ G KVF+ MSER+ VSW+++I GYAR     +A+ LF +M                 
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM----------------- 223

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
                            + K MV       NAL+DM+ KCG +D A +LF     R +V 
Sbjct: 224 -----------------LNKVMV-------NALVDMYMKCGAIDAAKRLFDECVDRNLVL 259

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++++  A  G   EA+A+ +EML+ G  PD V  +  +SA +   LVD    ++  + 
Sbjct: 260 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVDL---FYGKVC 314

Query: 241 NDFGIIPKIEHYG---------CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           + + +   IE  G          +VDM  R G  + A +   KM  E +   W   I   
Sbjct: 315 HGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM-TERDVSAWTAAIGTM 373

Query: 292 CARGELKLAESITKRLI 308
              G  + A  +  +++
Sbjct: 374 AMEGNGEGATGLFNQML 390



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 18/242 (7%)

Query: 62  IELGRKVF-----DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           ++  RK F     D  S+      +++I GY+  GL  +AI L+ +M + GV P+  T  
Sbjct: 76  LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VLS CT + A   G  V   + K  +   V + N LI  +A+CG +D   K+F  M+ R
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VSWTS+I G A   R  EAV+LF EML      + V    L+     CG +D  +  F
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEML------NKVMVNALVDMYMKCGAIDAAKRLF 249

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR-TLISACCARG 295
           D   +   ++     Y  ++    R G  +EA   + +M ++  P   R T++SA  A  
Sbjct: 250 DECVDRNLVL-----YNTILSNYARQGLAREALAILDEM-LQQGPRPDRVTMLSAISASA 303

Query: 296 EL 297
           +L
Sbjct: 304 QL 305


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/502 (38%), Positives = 288/502 (57%), Gaps = 33/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  +   +  AC+ I  L  G  VH   +K     +    N L+ MYG C   +E 
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN-MEY 472

Query: 65  GRKVF-------------------------------DEMSERDSVSWSAMIGGYARLGLS 93
            R+VF                               D M  RD VSW+ +I  YA    S
Sbjct: 473 ARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQS 532

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+  F+ M      P+   +  +L  C  LGA ++G+ + +   K  ++  + + NAL
Sbjct: 533 NEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL 592

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           I M+ KCG  D + ++F  M  R I +W ++I G A HG G EA+ +++ M  AGV P++
Sbjct: 593 ISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V FVGLL+ACSH GLVD+G ++F SM  D+G+ P  EHY CMVD+L R+G V+ A +FI 
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MPIE + +IW  L+ AC      ++ +   ++L   EP +  NYV+LS+IY+ L  W +
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGE 771

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             ++R++M ++G+ K PG +  ++ ++++ FV GDK H Q +EI   L+E+   +K  GY
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGY 831

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP T  VL DI+EE KE +L  HSEKLA+A+ LL TP G PI+I+KNLR+C DCH+  KF
Sbjct: 832 VPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKF 891

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           +S +  R+I +RD +RFHHF++
Sbjct: 892 VSHVTKRQIDIRDGNRFHHFRN 913



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +F++M ER+ VSW+ MI GY R+     A D+F +M   G+ PD+    + LSA   
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-DKALKLFRSMNGRTIVSWTS 183
           LG L+V + +     K    R V +  A+++++++   V D A+K F SM  R   +W++
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF-VGLLSACSHCGLVDKGREYFDSMKND 242
           +IA L+  GR   A+A++E       P   +A    L++  + CG +D  R  F+ +   
Sbjct: 297 MIAALSHGGRIDAAIAVYER-----DPVKSIACRTALITGLAQCGRIDDARILFEQIPE- 350

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
               P +  +  ++    ++G V EA E   KMP   N I W  +I+     G  + A  
Sbjct: 351 ----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG 405

Query: 303 ITKRL 307
           + + L
Sbjct: 406 LLQEL 410



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 5/191 (2%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N L+  Y    G +   +++FD+M  R+++SW+ MI GYA+ G S +A+ L +++  SG+
Sbjct: 357 NALITGYMQ-NGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P   ++ ++  AC+++ ALE G  V S   K     +   CNALI M+ KC +++ A +
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  + IVSW S +A L  +    EA   F+ ML      DDV++  ++SA +H   
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS----RDDVSWTTIISAYAHAEQ 531

Query: 229 VDKGREYFDSM 239
            ++    F +M
Sbjct: 532 SNEAMGAFKTM 542



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P++  +   L A  G+G+L++ +S+    LK  F  D+ +   ++++Y      ++ 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K F+ M ER+  +WS MI   +  G    AI ++ +  +  +      ++T L+ C  
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC-RTALITGLAQCGR 337

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +    +       + +Q+    V   NALI  + + G V++A +LF  M  R  +SW  +
Sbjct: 338 IDDARI-------LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGM 390

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG A +GR  EA+ L +E+  +G+ P   +   +  ACS+   ++ G +   S+    G
Sbjct: 391 IAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVG 449

Query: 245 IIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              +   + C  ++ M  +   ++ A +   +M +  + + W + ++A
Sbjct: 450 C--QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 118/280 (42%), Gaps = 44/280 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R+VFD M  RD ++W++MI  Y   G+   A DL+    ISG   +  T   +L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISG--GNMRTGAILL 103

Query: 120 SACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           S    LG  LE  +  +  +E+  V       NA+I  + + GD+  A +LF +M  R +
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTV-----AWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-------------------------------A 207
            SW S++ G     + ++A  LFE+M E                                
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ PD   F   LSA    G +D   E    +    G    +     ++++  R   V +
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 268 -AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
            A +F + M IE N   W T+I+A    G +  A ++ +R
Sbjct: 278 TAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAVYER 316



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI------------------------ 185
           C+A I    + G V +A ++F +M  R I++W S+I                        
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 186 -------AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
                  +G    GR LEA  +F+ MLE     + VA+  ++S     G +   R  FD+
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGMLE----RNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M +       +  +  M+   C S ++ +A    +KMP E N + W  +IS 
Sbjct: 153 MPSR-----DVSSWNSMLTGYCHSLQMVDARNLFEKMP-ERNLVSWTVMISG 198


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/500 (39%), Positives = 296/500 (59%), Gaps = 40/500 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           + E G+SPN  T   VL AC         + +H  V+K+ F  D +VQN L+ MY S  G
Sbjct: 381 VFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMY-SRMG 439

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG------------- 107
            IE+ R +F  M+ +D VSW+ MI GY   G   DA++L   MQ                
Sbjct: 440 RIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYED 499

Query: 108 -----VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
                + P+ +T++TVL  C  L AL  GK + ++  KQM+++ V + +AL+DM+AKCG 
Sbjct: 500 NKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGC 559

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-----VPPDDVAFV 217
           ++ +  +F  M+ R +++W  +I    MHG+G EA+ LF  M+E G     + P++V ++
Sbjct: 560 LNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYI 619

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            + ++ SH G+VD+G   F +MK   GI P  +HY C+VD+L RSG+++EA+  I+ MP 
Sbjct: 620 AIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPS 679

Query: 278 EANPI-IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW-EKKT 335
               +  W +L+ AC     L++ E   K L   +P               +L +  K++
Sbjct: 680 NMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP--------------NVLDYGTKQS 725

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
            +   M ++G++K PG + IE  +E+++F+ GD SH QSKE++E L+ +  +MKK GYVP
Sbjct: 726 MLGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVP 785

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
            TS VL ++ EE+KE  L  HSE+LAIAF LL T PGT IR+ KNLRVCNDCH ATKFIS
Sbjct: 786 DTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFIS 845

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           KI +REI++RD  RFHHF++
Sbjct: 846 KIVDREIILRDVRRFHHFRN 865



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 162/296 (54%), Gaps = 14/296 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV P+ F +P VLKA AGI DLNLGK +H  V KF       V N+LV+MYG C G
Sbjct: 76  MVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKC-G 134

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  R+VFDE++ RD VSW++MI    R      A+ LFR M +  V P   T+V+V  
Sbjct: 135 DIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAH 194

Query: 121 ACTDL-GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC++L   L +GK V +F+ +    R+    NAL+ M+AK G V +A  LF   + + +V
Sbjct: 195 ACSNLINGLLLGKQVHAFVLRNGDWRTF-TNNALVTMYAKLGRVYEAKTLFDVFDDKDLV 253

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY--FD 237
           SW ++I+ L+ + R  EA+     ML++GV P+ V    +L ACSH  ++  G+E   F 
Sbjct: 254 SWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFV 313

Query: 238 SMKNDFGIIPKIEH--YGC-MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            M ND      IE+   GC +VDM C   + ++       M       +W  +I+ 
Sbjct: 314 LMNNDL-----IENSFVGCALVDMYCNCKQPEKGRLVFDGM-FRRTIAVWNAMIAG 363



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 142/302 (47%), Gaps = 15/302 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG-IGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSC 58
           ML   V P  FT   V  AC+  I  L LGK VH  VL+   GD      N LV MY   
Sbjct: 177 MLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRN--GDWRTFTNNALVTMYAKL 234

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G +   + +FD   ++D VSW+ +I   ++     +A+     M  SGV P+ +T+ +V
Sbjct: 235 -GRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASV 293

Query: 119 LSACTDLGALEVGKWVESFI--EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           L AC+ L  L  GK + +F+     ++  S   C AL+DM+  C   +K   +F  M  R
Sbjct: 294 LPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGC-ALVDMYCNCKQPEKGRLVFDGMFRR 352

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHC-GLVDKGRE 234
           TI  W ++IAG   +    EA+ LF EM+ E G+ P+ V    +L AC  C   +DK  E
Sbjct: 353 TIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDK--E 410

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA--CC 292
              S    +G          ++DM  R GR++ A      M    + + W T+I+    C
Sbjct: 411 GIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMITGYVVC 469

Query: 293 AR 294
            R
Sbjct: 470 GR 471



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           AI  +  M  +GV PD      VL A   +  L +GK + + + K        + N+L++
Sbjct: 69  AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVN 128

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           M+ KCGD+D A ++F  +  R  VSW S+I           AV LF  ML   V P    
Sbjct: 129 MYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFT 188

Query: 216 FVGLLSACSHC---GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V +  ACS+     L+ K    F     D+           +V M  + GRV EA    
Sbjct: 189 LVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTN----NALVTMYAKLGRVYEAKTLF 244

Query: 273 QKMPIEANPIIWRTLISA 290
                + + + W T+IS+
Sbjct: 245 DVFD-DKDLVSWNTIISS 261



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +A++ +  M+ AGVPPD+ AF  +L A +    ++ G++   +    FG          +
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQ-LHAHVFKFGQALPTAVPNSL 126

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           V+M  + G +  A     ++    + + W ++I+A C   E +LA  +  RL+  E +  
Sbjct: 127 VNMYGKCGDIDAARRVFDEI-TNRDDVSWNSMINAACRFEEWELAVHLF-RLMLLENVGP 184

Query: 316 SNYVLLSHIYA 326
           +++ L+S  +A
Sbjct: 185 TSFTLVSVAHA 195


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/502 (38%), Positives = 288/502 (57%), Gaps = 33/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+  +   +  AC+ I  L  G  VH   +K     +    N L+ MYG C   +E 
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN-MEY 472

Query: 65  GRKVF-------------------------------DEMSERDSVSWSAMIGGYARLGLS 93
            R+VF                               D M  RD VSW+ +I  YA    S
Sbjct: 473 ARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQS 532

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+  F+ M      P+   +  +L  C  LGA ++G+ + +   K  ++  + + NAL
Sbjct: 533 NEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL 592

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           I M+ KCG  D + ++F  M  R I +W ++I G A HG G EA+ +++ M  AGV P++
Sbjct: 593 ISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V FVGLL+ACSH GLVD+G ++F SM  D+G+ P  EHY CMVD+L R+G V+ A +FI 
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MPIE + +IW  L+ AC      ++ +   ++L   EP +  NYV+LS+IY+ L  W +
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGE 771

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             ++R++M ++G+ K PG +  ++ ++++ FV GDK H Q +EI   L+E+   +K  GY
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGY 831

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP T  VL DI+EE KE +L  HSEKLA+A+ LL TP G PI+I+KNLR+C DCH+  KF
Sbjct: 832 VPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKF 891

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           +S +  R+I +RD +RFHHF++
Sbjct: 892 VSHVTKRQIDIRDGNRFHHFRN 913



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R +F++M ER+ VSW+ MI GY R+     A D+F +M   G+ PD+    + LSA   
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-DKALKLFRSMNGRTIVSWTS 183
           LG L+V + +     K    R V +  A+++++++   V D A+K F SM  R   +W++
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF-VGLLSACSHCGLVDKGREYFDSMKND 242
           +IA L+  GR   A+A++E       P   +A    L++  + CG +D  R  F+ +   
Sbjct: 297 MIAALSHGGRIDAAIAVYER-----DPVKSIACRTALITGLAQCGRIDDARILFEQIPE- 350

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
               P +  +  ++    ++G V EA E   KMP   N I W  +I+     G  + A  
Sbjct: 351 ----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG 405

Query: 303 ITKRL 307
           + + L
Sbjct: 406 LLQEL 410



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 5/191 (2%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N L+  Y    G +   +++FD+M  R+++SW+ MI GYA+ G S +A+ L +++  SG+
Sbjct: 357 NALITGYMQ-NGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P   ++ ++  AC+++ ALE G  V S   K     +   CNALI M+ KC +++ A +
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  + IVSW S +A L  +    EA   F+ ML      DDV++  ++SA +H   
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS----RDDVSWTTIISAYAHAEQ 531

Query: 229 VDKGREYFDSM 239
            ++    F +M
Sbjct: 532 SNEAMGAFKTM 542



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P++  +   L A  G+G+L++ +S+    LK  F  D+ +   ++++Y      ++ 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             K F+ M ER+  +WS MI   +  G    AI ++ +  +  +      ++T L+ C  
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC-RTALITGLAQCGR 337

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +    +       + +Q+    V   NALI  + + G V++A +LF  M  R  +SW  +
Sbjct: 338 IDDARI-------LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGM 390

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IAG A +GR  EA+ L +E+  +G+ P   +   +  ACS+   ++ G +   S+    G
Sbjct: 391 IAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQ-VHSLAVKVG 449

Query: 245 IIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              +   + C  ++ M  +   ++ A +   +M +  + + W + ++A
Sbjct: 450 C--QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 118/280 (42%), Gaps = 44/280 (15%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R+VFD M  RD ++W++MI  Y   G+   A DL+    ISG   +  T   +L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA--ISG--GNMRTGAILL 103

Query: 120 SACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           S    LG  LE  +  +  +E+  V       NA+I  + + GD+  A +LF +M  R +
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTV-----AWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-------------------------------A 207
            SW S++ G     + ++A  LFE+M E                                
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ PD   F   LSA    G +D   E    +    G    +     ++++  R   V +
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 268 -AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306
            A +F + M IE N   W T+I+A    G +  A ++ +R
Sbjct: 278 TAIKFFESM-IERNEYTWSTMIAALSHGGRIDAAIAVYER 316



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI------------------------ 185
           C+A I    + G V +A ++F +M  R I++W S+I                        
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 186 -------AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
                  +G    GR LEA  +F+ MLE     + VA+  ++S     G +   R  FD+
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGMLE----RNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           M +       +  +  M+   C S ++ +A    +KMP E N + W  +IS 
Sbjct: 153 MPSR-----DVSSWNSMLTGYCHSLQMVDARNLFEKMP-ERNLVSWTVMISG 198


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/426 (40%), Positives = 279/426 (65%), Gaps = 2/426 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           +T++  Y  C G ++  R+VF E  E+D V W+AM+ GYA+ G   DA+ LF +M +  +
Sbjct: 260 STIIAAYCQC-GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            PD  T+ +V+S+C  L +L  G+ V        +N ++ + +ALIDM++KCG +D A  
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M  R +VSW ++I G A +G   +A+ LFE ML+    PD+V F+G+LSAC HC  
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +++G+EYFDS+ N  G+ P ++HY CMV++L R+GR+++A   I+ M  + + +IW TL+
Sbjct: 439 IEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
           S C  +G++  AE   + L   +P     Y++LS++YA + RW+    +R +M  + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
             G + IE+DNE++ F   D++H +S++IYE L+ +  K+++ G+ P T+ VL D+ E++
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDE 618

Query: 409 KEDALNKHSEKLAIAFALLKTPPG-TPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           K  ++  HSEKLA+AF L+K P G +PIRI+KN+R+CNDCH   KF S+I  R+I++RD 
Sbjct: 619 KFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDS 678

Query: 468 HRFHHF 473
           +RFHHF
Sbjct: 679 NRFHHF 684



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 48/313 (15%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  P ++T   +L A A + DL  GK +HG+++   F  ++ + N L  MY  C G
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC-G 204

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  R +FD +++++ VSW+ MI GYA+ G     I L  QM++SG  PD++TM T+++
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A                                   + +CG VD+A ++F     + IV 
Sbjct: 265 A-----------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----HCGLVDKGREY 235
           WT+++ G A +GR  +A+ LF EML   + PD      ++S+C+     H G    G+  
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              + N+  +         ++DM  + G + +A      MP   N + W  +I  C   G
Sbjct: 350 LAGLNNNLLV------SSALIDMYSKCGFIDDARSVFNLMPTR-NVVSWNAMIVGCAQNG 402

Query: 296 ELKLAESITKRLI 308
             K A  + + ++
Sbjct: 403 HDKDALELFENML 415



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 149/303 (49%), Gaps = 13/303 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + F +  +L   A  G L   +++   +LK     D    N L+  Y    G I+  +  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLK----RDXFSWNALLSAYAK-SGSIQNLKAT 111

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FD M  RDSVS++  I G++      ++++LF++MQ  G  P E T+V++L+A   L  L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDL 171

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             GK +   I  +    +V + NAL DM+AKCG++++A  LF  +  + +VSW  +I+G 
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A +G+  + + L  +M  +G  PD V    +++A   CG VD+ R  F   K        
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KD 286

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITK 305
           I  +  M+    ++GR ++A     +M    IE +     +++S+C     L   +++  
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 306 RLI 308
           + I
Sbjct: 347 KSI 349


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/503 (39%), Positives = 298/503 (59%), Gaps = 40/503 (7%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTL---------------- 51
           P+ FT+P +L +      L+L   +H  +LK  F    H Q+                  
Sbjct: 99  PDHFTFPQILPSAQ---PLHLVAQLHALLLKLGF--HAHTQSLNALLAAYLANARPDLAS 153

Query: 52  -----------VHMYGSCEGGI-ELG-----RKVFDEMSERDSVSWSAMIGGYARLGLST 94
                      V  + +  GG+ +LG     R +FD M ER+ VSW+AM+ GY +     
Sbjct: 154 RVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL 213

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           DA+++F +M+  GV  +     T + ACT  GAL  G+ V  ++E+  +     L  A++
Sbjct: 214 DALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVV 273

Query: 155 DMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           DM+ KCG V++A ++F ++    + + +W  +I G A+HGRG +A+ LF  M   GV PD
Sbjct: 274 DMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPD 333

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           DV  V +L+AC+H G++ +GR YF+ +   +GI PK+EHYGCMVD+  R+GR++EA + I
Sbjct: 334 DVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVI 393

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           Q MP+E +  +   L  A    G++ L E+I  R+I  +P +   YVLL+++ A   RWE
Sbjct: 394 QDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWE 453

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              ++R +MD+R + K  G ++IE+  E+ EF CG   H +++E+Y M  +M RK++  G
Sbjct: 454 DVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEG 513

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP T +VL  I EE+KE  L  HSEKLAIAF LL T PG  +RI KNLRVC DCH ATK
Sbjct: 514 YVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATK 573

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
           F+S+++ R+IVVRDR+RFHHFKD
Sbjct: 574 FVSRVFERQIVVRDRNRFHHFKD 596



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N F     + AC G G L  G+ VH  V +     D  +   +V MY  C G
Sbjct: 222 MRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKC-G 280

Query: 61  GIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E   +VF+   ++ +   +W+ MIGG+A  G   DA+ LF +M+  GV PD++T+V V
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNV 340

Query: 119 LSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           L+AC   G L  G+   +++ ++  +   +     ++D++ + G +++A K+ + M
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/476 (39%), Positives = 293/476 (61%), Gaps = 14/476 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +  F LKA A   D +    +H  VL+     D+ +  TL+  Y  C G +   RK
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKC-GDLASARK 167

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ------ISGVCPDEITMVTVLSA 121
           VFDEM+ RD  +W++++ G A+      A+ LF ++        S   P+E+T+V  LSA
Sbjct: 168 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSA 227

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV 179
           C  +G L+ G +V  F ++  ++R+V +CN+LIDM++KCG + +AL +F S+    +T+V
Sbjct: 228 CAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLV 287

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I   +MHG G +A+ LF+EM    + PD V ++ +L  C+H GLVD G   F+SM
Sbjct: 288 SYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM 346

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ +  MP  A+ ++W+TL+ A    G ++L
Sbjct: 347 R----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVEL 402

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+D 
Sbjct: 403 AELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDG 462

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  L+++  ++ + GY P TS VL DI EE+K+ AL  HSEK
Sbjct: 463 VMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEK 522

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  +R++KNLR+C DCH   K ISK Y R IV+RDR RFH F+D
Sbjct: 523 LAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFED 578


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/381 (46%), Positives = 265/381 (69%), Gaps = 3/381 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E  + P+KFT+PFV+K+CAG+   +LGK VHG V KF    +  V+N+LV MY  C+  +
Sbjct: 155 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDS-L 213

Query: 63  ELGRKVFDEMSERDSV--SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
           +   +VF+EM+ERD+   SW+A++ GYAR+G   DA++ FR+MQ+ G+ PDEI++V+VL 
Sbjct: 214 DDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 273

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  LGALE+GKW+  + +K    R++ +CNALI+M+AKCG +D+  +LF  M  R ++S
Sbjct: 274 DCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVIS 333

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HGR  EA+ LF+EM +A + P  + FVGLL+AC+H GL+++G  YF+SMK
Sbjct: 334 WSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMK 393

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D+ I P +EHYGC+V++L  SGR+ +A E ++KMP + +  IW +L+S+C + G LK+A
Sbjct: 394 RDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIA 453

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               + L+  EP    NYVLLS++YA L +W+  +++R++M  + MKK PG + IE+DN 
Sbjct: 454 VIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNM 513

Query: 361 IYEFVCGDKSHHQSKEIYEML 381
           + EF  GD S   SK I  +L
Sbjct: 514 VQEFASGDDSKPFSKAICRVL 534



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 171/388 (44%), Gaps = 60/388 (15%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK C  I +L   K +H  ++KF       +   +V +     G  E    +F  +++ 
Sbjct: 65  ILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNH-YGETEYANLLFKGVADP 120

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQM-----QISGVCPDEITMVTVLSACTDLGALEV 130
           ++  ++AMI  Y    +   AI +++QM       + + PD+ T   V+ +C  L   ++
Sbjct: 121 NAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDL 180

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGL 188
           GK V   + K     +  + N+L++M+ KC  +D A ++F  M  R  TI SWT++++G 
Sbjct: 181 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGY 240

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----------------------- 225
           A  G   +A+  F  M   G+ PD+++ V +L  C+                        
Sbjct: 241 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNI 300

Query: 226 ------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
                       CG +D+GR  FD MK        +  +  M+  L   GR +EA E  Q
Sbjct: 301 CVCNALIEMYAKCGSIDQGRRLFDQMKER-----DVISWSTMIVGLANHGRAREAIELFQ 355

Query: 274 KMP---IEANPIIWRTLISACCARG----ELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
           +M    IE + I +  L++AC   G     L+  ES+ KR    EP  E +Y  L ++  
Sbjct: 356 EMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM-KRDYNIEPGVE-HYGCLVNLLG 413

Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTL 354
              R ++  ++ + M ++    I GS L
Sbjct: 414 LSGRLDQALELVKKMPRKPDSPIWGSLL 441


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 305/505 (60%), Gaps = 34/505 (6%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
            G+ P+ F+   +L +C  + D   G+ +H  +++    ++  +Q  LV MY  C      
Sbjct: 575  GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634

Query: 59   ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                     G     + +FD+M +R++  W++++ GYA  GL  
Sbjct: 635  WKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKK 694

Query: 95   DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI-EKQMVNRSVGLCNAL 153
            ++ + F +M  S +  D +TMVT+++ C+ L ALE G  + S I +K  VN SV L  AL
Sbjct: 695  ESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETAL 754

Query: 154  IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
            +DM++KCG + KA  +F +MNG+ IVSW ++I+G + HG   EA+ L+EEM + G+ P++
Sbjct: 755  VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNE 814

Query: 214  VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
            V F+ +LSACSH GLV++G   F SM+ D+ I  K EHY CMVD+L R+GR+++A EF++
Sbjct: 815  VTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 874

Query: 274  KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            KMPIE     W  L+ AC    ++ +     +RL   +P +   YV++S+IYA   RW++
Sbjct: 875  KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKE 934

Query: 334  KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
               IR++M  +G+KK PG + IE+++EI  F  G K+H +++EIY  L  +  + K  GY
Sbjct: 935  VEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGY 994

Query: 394  VPTTSEVLL---DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
            +P TS +L    DI EE++E+ L +HSE+LA++  L+  P  + IR+ KNLR+C DCH+A
Sbjct: 995  IPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTA 1054

Query: 451  TKFISKIYNREIVVRDRHRFHHFKD 475
            TKFISKI  R I+ RD +RFHHF++
Sbjct: 1055 TKFISKITGRRIIARDTNRFHHFEN 1079



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 166/314 (52%), Gaps = 16/314 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+ GV P+ FT+   L+ C  +   + GK VH  ++   F  D  V N L+ MY  C+ 
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDD 326

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E   KVFDEM ER+ V+W+++I   A+ G   DA+ LF +MQ SG   +   + ++L 
Sbjct: 327 E-ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILM 385

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   L  +  G+ +   + + ++N  + L +AL+DM++KCG V++A ++FRS+  R  VS
Sbjct: 386 ASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS 445

Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           + +++AG    G+  EA+ L+ +M  E G+ PD   F  LL+ C++    ++GR+    +
Sbjct: 446 YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 505

Query: 240 ------KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
                 KN   II + E    +V M    GR+  A E   +M  E N   W ++I     
Sbjct: 506 IRANITKN---IIVETE----LVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQ 557

Query: 294 RGELKLAESITKRL 307
            GE + A  + K++
Sbjct: 558 NGETQEALRLFKQM 571



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 169/331 (51%), Gaps = 18/331 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G   N+F    +L A AG+ D+  G+ +HG +++     DI + + LV MY  C G
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKC-G 426

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVL 119
            +E   +VF  + ER+ VS++A++ GY + G + +A++L+  MQ   G+ PD+ T  T+L
Sbjct: 427 MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           + C +      G+ + + + +  + +++ +   L+ M+++CG ++ A ++F  M  R   
Sbjct: 487 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 546

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I G   +G   EA+ LF++M   G+ PD  +   +LS+C       KGRE     
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL---- 602

Query: 240 KNDFGIIPKIEHYG----CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            ++F +   +E  G     +VDM  + G +  A + +    I+ + I+   ++SA    G
Sbjct: 603 -HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSAFVNSG 660

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
               A+++       + M + N  L + I A
Sbjct: 661 RANDAKNLF------DQMEQRNTALWNSILA 685



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 150/323 (46%), Gaps = 16/323 (4%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG--SCEGGIELGR 66
           N   Y  +++ C        GKS+H  ++   +  D ++   ++ +Y    C   +   R
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           K+F+EM ER+  +W+ MI  YAR+    + + L+ +M+ SG   D+ T  +V+ AC  + 
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAME 189

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            +   + ++S + K  +N ++ +  AL+D +A+ G +D A+     + G ++V+W +VIA
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-----KN 241
           G        EA  +F+ ML+ GV PD+  F   L  C      D G++    +     K 
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           D  +         ++DM  +    +   +   +M  E N + W ++ISA    G    A 
Sbjct: 310 DTFV------GNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISAEAQFGHFNDAL 362

Query: 302 SITKRLIGNEPMHESNYVLLSHI 324
            +  R+   E  ++SN   L  I
Sbjct: 363 VLFLRM--QESGYKSNRFNLGSI 383


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/430 (42%), Positives = 281/430 (65%), Gaps = 2/430 (0%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           V N ++  +G   G ++  R+VF  M ERD+ +WSAMI  Y R G   +A+ LFR+MQ  
Sbjct: 274 VCNEMIMGFG-LNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE 332

Query: 107 GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
           G+  +  ++++VLS C  L +L+ GK V + + +   ++ + + + LI M+ KCG++ +A
Sbjct: 333 GLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRA 392

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
            ++F     + +V W S+I G + HG G EA+ +F +M  +GVPPDDV F+G+LSACS+ 
Sbjct: 393 KQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYS 452

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           G V +G E F++MK  + + P IEHY C+VD+L R+ +V EA + ++KMP+E + I+W  
Sbjct: 453 GKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGA 512

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
           L+ AC    +L LAE   ++L   EP +   YVLLS++YA   RW     +RE +  R +
Sbjct: 513 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSV 572

Query: 347 KKIPGSTLIELDNEIYEFVCGD-KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405
            K+PG + IE++ +++ F  GD K H +   I +ML+++G  +++AGY P  S VL D++
Sbjct: 573 TKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVD 632

Query: 406 EEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465
           EE+K  +L  HSEKLA+A+ LLK P G PIR++KNLRVC DCHSA K I+K+  REI++R
Sbjct: 633 EEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILR 692

Query: 466 DRHRFHHFKD 475
           D +RFHHFKD
Sbjct: 693 DANRFHHFKD 702



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G++ N  +   VL  C  +  L+ GK VH  +++ +F  D++V + L+ MY  C G
Sbjct: 329 MQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKC-G 387

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   ++VF+    +D V W++MI GY++ GL  +A+++F  M  SGV PD++T + VLS
Sbjct: 388 NLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLS 447

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G ++ G +  E+   K  V   +     L+D+  +   V++A+KL   M      
Sbjct: 448 ACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDA 507

Query: 179 VSWTSVIAGLAMH 191
           + W +++     H
Sbjct: 508 IVWGALLGACRTH 520



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 13/242 (5%)

Query: 56  GSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G CE G ++  R +FDEM +R+ V+W+AM+ GYAR G    A  LF  M       +E++
Sbjct: 188 GYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVS 243

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
              +L   T  G +       S +   M  + V +CN +I  F   G+VDKA ++F+ M 
Sbjct: 244 WTAMLLGYTHSGRMREA----SSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMK 299

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R   +W+++I      G  LEA+ LF  M   G+  +  + + +LS C     +D G++
Sbjct: 300 ERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQ 359

Query: 235 YFDSM-KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               + +++F     +     ++ M  + G +  A +   + P++ + ++W ++I+    
Sbjct: 360 VHAQLVRSEFD--QDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQ 416

Query: 294 RG 295
            G
Sbjct: 417 HG 418



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 20/246 (8%)

Query: 60  GGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           G ++  RKVFDE  +  R   SW+AM+  Y       +A+ LF +M       + ++   
Sbjct: 36  GQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR----NTVSWNG 91

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           ++S     G L   + V       M +R+V    +++  + + GDV +A +LF  M  + 
Sbjct: 92  LISGHIKNGMLSEARRVFD----TMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKN 147

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +VSWT ++ GL   GR  +A  LF+ M E     D VA   ++      G +D+ R  FD
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            M         +  +  MV    R+G+V  A +  + MP E N + W  ++      G +
Sbjct: 204 EMPKR-----NVVTWTAMVSGYARNGKVDVARKLFEVMP-ERNEVSWTAMLLGYTHSGRM 257

Query: 298 KLAESI 303
           + A S+
Sbjct: 258 REASSL 263



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 127/297 (42%), Gaps = 44/297 (14%)

Query: 48  QNTLVHMYGSCEGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
           Q   V   G   G I+ G     R+VFD M +R+ VSW++M+ GY R G   +A  LF  
Sbjct: 83  QRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWH 142

Query: 103 MQISGVCPDEITMVTVLS--------------------ACTDL--GALEVGKWVES-FIE 139
           M    V    + +  +L                     A T++  G  E G+  E+  + 
Sbjct: 143 MPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
            +M  R+V    A++  +A+ G VD A KLF  M  R  VSWT+++ G    GR  EA +
Sbjct: 203 DEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASS 262

Query: 200 LFEEMLEAGVPPDDVAFVG-LLSACSHCGLVDKGREYFDSMK-NDFGIIPKIEHYGCMVD 257
           LF+ M     P   V     ++      G VDK R  F  MK  D G       +  M+ 
Sbjct: 263 LFDAM-----PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGT------WSAMIK 311

Query: 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLI---SACCARGELKLAESITKRLIGNE 311
           +  R G   EA    ++M  E   + + +LI   S C +   L   + +  +L+ +E
Sbjct: 312 VYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSE 368



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 42/230 (18%)

Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
           F E  + +R+V   NA++  + +     +AL LF  M  R  VSW  +I+G   +G   E
Sbjct: 45  FDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSE 104

Query: 197 AVALFEEMLEAGV--------------------------PPDD-VAFVGLLSACSHCGLV 229
           A  +F+ M +  V                          P  + V++  +L      G V
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRV 164

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           D  R+ FD M         +     M+   C  GR+ EA     +MP + N + W  ++S
Sbjct: 165 DDARKLFDMMPEK-----DVVAVTNMIGGYCEEGRLDEARALFDEMP-KRNVVTWTAMVS 218

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339
                G++ +A  +       E M E N V  +   A LL +    ++RE
Sbjct: 219 GYARNGKVDVARKLF------EVMPERNEVSWT---AMLLGYTHSGRMRE 259


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/473 (41%), Positives = 284/473 (60%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+PNK T    L ACA +GDL  G  +H  V        + V   LV++YG C G IE 
Sbjct: 172 GVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKC-GRIEA 230

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F ++ E++ V+WSA+   YAR   + DAI +  +M + G+ P+  T V+VL AC  
Sbjct: 231 AAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAA 290

Query: 125 LGALEVGKWVESFIE--KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           + AL+ G+ +   I      +   V +  AL++M++KCG++  A  +F  +    +V W 
Sbjct: 291 IAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWN 350

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+IA  A HG+  +A+ LFE M   G+ P  + F  +L ACSH G++D+GR++F S   D
Sbjct: 351 SLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGD 410

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            GI P+ EH+GCMVD+L R+G + ++ + +  MP E +P+ W   + AC     +  A  
Sbjct: 411 HGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIW 470

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             + L   +P   + YVLLS++YAK  RW    ++R+ M      K  G + IE+ + ++
Sbjct: 471 AAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 530

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
           EF+ GD  H +  EI+  L  + + MK AGYVP T  VL D+ +E KE  +  HSEKLA+
Sbjct: 531 EFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAM 590

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AFALL TP G+PIR+VKNLRVCNDCH+A+KFISK+ NREIVVRD +RFH F++
Sbjct: 591 AFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQN 643



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 158/308 (51%), Gaps = 3/308 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G++P +      L AC    ++ +G+S+  A+L     ++  VQ  LV +YG   G
Sbjct: 67  MLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL-G 125

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                  VF  MS RD V+WSAM+  YAR G   +A+ LFRQM + GV P+++T+V+ L 
Sbjct: 126 HCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 185

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG L  G  +   +E Q +   V +  AL++++ KCG ++ A + F  +  + +V+
Sbjct: 186 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVA 245

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++ A  A + R  +A+ +   M   G+ P+   FV +L AC+    + +GR   + + 
Sbjct: 246 WSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIH 305

Query: 241 N-DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     +V+M  + G +  A     K+    + ++W +LI+     G+ + 
Sbjct: 306 VLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEK 364

Query: 300 AESITKRL 307
           A  + +R+
Sbjct: 365 ALELFERM 372



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N L+ +Y  C+   +    VF  +  ++  SW+ M+  +A           FR M + G+
Sbjct: 14  NLLIDLYTKCDR-FDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGI 72

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            P E+ +   LSACTD   + +G+ ++  I    +     +  AL+ ++ K G    A  
Sbjct: 73  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAAS 132

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F  M+ R +V+W++++A  A +G   EA+ LF +M   GV P+ V  V  L AC+  G 
Sbjct: 133 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 192

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +  G      ++   GI   +     +V++  + GR++ A E   ++ +E N + W + I
Sbjct: 193 LRSGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAW-SAI 249

Query: 289 SACCARGE 296
           SA  AR +
Sbjct: 250 SAAYARND 257



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 33/196 (16%)

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
           R+  LCN LID++ KC   D AL +F  +  + + SWT ++A  A +         F  M
Sbjct: 8   RNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGM 67

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREY------------------FDSMKNDFG-- 244
           L  G+ P +V     LSAC+    +  GR                      S+    G  
Sbjct: 68  LLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHC 127

Query: 245 -----IIPKIEH-----YGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISAC 291
                +  ++ H     +  MV    R+G  +EA    ++M ++    N +   + + AC
Sbjct: 128 TDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDAC 187

Query: 292 CARGELKLAESITKRL 307
            + G+L+    + +R+
Sbjct: 188 ASLGDLRSGALMHQRV 203


>gi|302818616|ref|XP_002990981.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
 gi|300141312|gb|EFJ08025.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
          Length = 578

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/471 (39%), Positives = 287/471 (60%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+P+K T    L AC    D + G  +H    +     D  VQ  LV++  +  G +E 
Sbjct: 98  GVTPSKGTCVAALNACCHSRDFSEGLRIHAFARELGGDADTVVQTALVNIMYARLGSLED 157

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R++FD M+ R+ +SW+AM+G +++LGL+ +A+ +FR + + GV P+++T   VL+A  +
Sbjct: 158 AREIFDAMTTRNVISWTAMVGVHSQLGLNREALRIFRSILLEGVTPNDVTFTAVLNASGN 217

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L ++   K V++ + +     +V + N L+    KCG +++  K FR M  +  VSW S 
Sbjct: 218 LASIRAAKLVQACLSETGFLGNVEVANGLLCALGKCGSLEEVAKFFRVMPVQNQVSWNSA 277

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           IA  A HG G+  V LF+ M   G+    V  +G+LS+CSH GLV +G  YF +M  D+G
Sbjct: 278 IAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMHVDYG 337

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISACCARGELKLAESI 303
           +  + EHY C++D+L R+G ++ A EF++++P     +  W TL+  C   G+L+     
Sbjct: 338 LPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDESVFPWITLLCGCKLHGDLERGGRA 397

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
           T+R++G  P     Y+++ ++YA   +W +   +R+ M   G KK PG + IE+   I+E
Sbjct: 398 TQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVDLGPKKEPGLSWIEVKGRIHE 457

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD SH +S EI+  L+ +  KMK+AG+V  T  V+ D+  ++KE  L +HSEKLAIA
Sbjct: 458 FRVGDTSHPRSSEIHRELERLNDKMKRAGFVCDTKAVVYDLQAKEKESLLCQHSEKLAIA 517

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           F L+ T  G P+RI+KNLRVC+DCHSATKFIS +  REIVVRD +RFHHF+
Sbjct: 518 FGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFR 568



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  TY  +L AC    +++  ++   A    +   D+ V   +++ YG C G ++  R 
Sbjct: 2   PNDVTYVAILGACGHPWEVDTIRARVEACGSLEL--DVIVATAVMNAYGKC-GDLDSARG 58

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FD +  RD+  W+AMI          +A++L RQM++ GV P + T V  L+AC     
Sbjct: 59  LFDRILVRDAAVWNAMISLLVVHEQGDEALELCRQMRLDGVTPSKGTCVAALNACCHSRD 118

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALID-MFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
              G  + +F  +   +    +  AL++ M+A+ G ++ A ++F +M  R ++SWT+++ 
Sbjct: 119 FSEGLRIHAFARELGGDADTVVQTALVNIMYARLGSLEDAREIFDAMTTRNVISWTAMVG 178

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246
             +  G   EA+ +F  +L  GV P+DV F  +L+A  +   + +  +   +  ++ G +
Sbjct: 179 VHSQLGLNREALRIFRSILLEGVTPNDVTFTAVLNASGNLASI-RAAKLVQACLSETGFL 237

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             +E    ++  L + G ++E  +F + MP++ N + W + I+A    G
Sbjct: 238 GNVEVANGLLCALGKCGSLEEVAKFFRVMPVQ-NQVSWNSAIAANAQHG 285


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/460 (40%), Positives = 290/460 (63%), Gaps = 1/460 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            L+ CA + DL++G  +H  + K     D+   N+L+ MY    G I      FDE++ +
Sbjct: 313 ALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA-GLINEATMFFDEIAVK 371

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D++S+ A++ G  + G + +A  +F++MQ   + PD  TMV+++ AC+ L AL+ GK   
Sbjct: 372 DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH 431

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             +  + +     +CN+LIDM+AKCG +D + ++F  M  R +VSW ++IAG  +HG G 
Sbjct: 432 GSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA  LF  M   G  PDDV F+ L++ACSH GLV +G+ +FD+M + +GI+P++EHY CM
Sbjct: 492 EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R G + EA++FIQ MP++A+  +W  L+ AC     + L + +++ +    P   
Sbjct: 552 VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT 611

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
            N+VLLS+I++   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH  S+
Sbjct: 612 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSR 671

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           +IY  LD +   +KK GY   TS VL D+ EE+KE AL  HSEKLAIAF +L       I
Sbjct: 672 DIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTI 731

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + KNLRVC DCH+A K+++ + NR I+VRD +RFHHFK+
Sbjct: 732 FVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKN 771



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 158/312 (50%), Gaps = 8/312 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PNK+T+PFVLKAC+ + DL  G+++H          D+ V   L+ +Y  C  
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC-A 149

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVL 119
                R VF +M  RD V+W+AM+ GYA  G+   AI     MQ   G+ P+  T+V++L
Sbjct: 150 RFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
                 GAL  G  + ++  +  + ++   V +  AL+DM+AKC  +  A ++F  M  R
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR 269

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREY 235
             V+W+++I G  +  R  EA  LF++ML  G+      +    L  C+    +  G + 
Sbjct: 270 NDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ- 328

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++    GI   +     ++ M  ++G + EA  F  ++ ++ + I +  L+S C   G
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNG 387

Query: 296 ELKLAESITKRL 307
           + + A  + K++
Sbjct: 388 KAEEAFLVFKKM 399



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 7/303 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF---QFGDDIHVQNTLVHMYGSCEGG 61
           G+ PN  T   +L   A  G L  G S+H   L+    Q  + + +   L+ MY  C+  
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV-TVLS 120
           +   R VF  M  R+ V+WSA+IGG+      T+A +LF+ M + G+C    T V + L 
Sbjct: 257 VYACR-VFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L  L +G  + + I K  ++  +   N+L+ M+AK G +++A   F  +  +  +S
Sbjct: 316 VCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++++G   +G+  EA  +F++M    + PD    V L+ ACSH   +  G+    S+ 
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G+  +      ++DM  + G++  + +   KMP   + + W T+I+     G  K A
Sbjct: 436 IR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHGLGKEA 493

Query: 301 ESI 303
            ++
Sbjct: 494 TTL 496



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G + L R+VFD +   D+ +++A+I  Y+ LG    AIDL+R M    V P++ T   V
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFV 106

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L AC+ L  L  G+ + +      ++  + +  ALID++ +C     A  +F  M  R +
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           V+W +++AG A HG    A+A   +M +  G+ P+    V LL   +  G + +G     
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 238 SM------KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                   +N+  ++        ++DM  +  ++  A      MP+  N + W  LI
Sbjct: 227 YCLRACLEQNEEQVLIGT----ALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALI 278


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/478 (42%), Positives = 289/478 (60%), Gaps = 5/478 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G   ++ T+  +L A + +    +   +H  VLK+   DD  + N L+  YG C G
Sbjct: 429 MMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC-G 487

Query: 61  GIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +    K+F  MSE RD VSW++MI GY    L   A+DL   M   G   D  T  T+L
Sbjct: 488 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATIL 547

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SAC  +  LE G  V +   +  +   V + +AL+DM++KCG +D A + F  M  R + 
Sbjct: 548 SACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVY 607

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG G +A+ LF  M+  G PPD V FVG+LSACSH G V++G E+F SM
Sbjct: 608 SWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSM 667

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC-ARG-EL 297
              + + P++EH+ CMVD+L R+G++ E  +FI  MP++ N +IWRT++ ACC A G   
Sbjct: 668 SEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNT 727

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +L     + L+  EP +  NYVLL+++YA   +WE   K R  M +  +KK  G + + +
Sbjct: 728 ELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTM 787

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
            + ++ FV GDK H +   IY+ L E+ RKM+ AGY+P T   L D+  E+KE+ L+ HS
Sbjct: 788 KDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHS 847

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EK+A+AF L +     PIRI+KNLRVC DCHSA  +ISKI  R+IV+RD +RFHHF+D
Sbjct: 848 EKIAVAFVLTRQ-SALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFED 904



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 26/343 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M+  G  PN + +   L+AC  +G     LG  +HG + K ++G D+ V N L+ MYGSC
Sbjct: 191 MVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC 250

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC----PDEIT 114
                  R VFD +  R+S+SW+++I  Y+R G +  A DLF  MQ  G+     P++  
Sbjct: 251 LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND-- 308

Query: 115 MVTVLSACTDLGALEVGKW----VESFIEKQMVN-RSVGLCNALIDMFAKCGDVDKALKL 169
                 A ++   LE G+     V + + +  +N   V + N L++M+AK G +  A  +
Sbjct: 309 ------AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSV 362

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-GL 228
           F  M  +  VSW S+I+GL  +    +A  +F  M E     D V++  ++ A S     
Sbjct: 363 FELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEY----DQVSWNSVIGALSDSEAS 418

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCM--VDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           V +  +YF  M      + ++     +  V  L       + H  + K  +  +  I   
Sbjct: 419 VSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNA 478

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           L+S     GE+   E I  R+         N ++  +I+ +LL
Sbjct: 479 LLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELL 521



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 126/270 (46%), Gaps = 15/270 (5%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
            + +H   +K+ F  ++ + NTL+++Y    G +   +K+FDEMS R+ V+W+ +I GY 
Sbjct: 118 ARELHLQSIKYGFVGNLFLSNTLINIYVRI-GDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG--ALEVGKWVESFIEKQMVNRS 146
           + G   +A   FR M  +G  P+     + L AC + G    ++G  +   I K      
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 147 VGLCNALIDMFAKCGD-VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           V +CN LI M+  C D  + A  +F  +  R  +SW S+I+  +  G  + A  LF  M 
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 206 EAGV-----PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
           + G+     P D  +   +L          KGRE    +        K+     +V+M  
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLEEGRR-----KGREVHAHVIRTGLNDNKVAIGNGLVNMYA 351

Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +SG + +A    + M +E + + W +LIS 
Sbjct: 352 KSGAIADACSVFELM-VEKDSVSWNSLISG 380



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 23/160 (14%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N LI+++ + GD+  A KLF  M+ R +V+W  +I+G   +G+  EA A F +M+ AG
Sbjct: 136 LSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAG 195

Query: 209 VPPDDVAFVGLLSAC-----SHC-------GLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
             P+  AF   L AC     S C       GL+ K R   D +  +      I  YG  +
Sbjct: 196 FIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNV----LISMYGSCL 251

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D         +A      + I  N I W ++IS    RG+
Sbjct: 252 D------SANDARSVFDGIGIR-NSISWNSIISVYSRRGD 284


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/514 (36%), Positives = 298/514 (57%), Gaps = 40/514 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIH----VQNTLV 52
           M   G+  +++TY  ++ AC      +G  N G+ VHG +L+       H    V N L+
Sbjct: 274 MHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALI 333

Query: 53  HMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY------------------------- 87
             Y   +  IE  R+VFD+M  RD +SW+A++ GY                         
Sbjct: 334 TFYTKYDRMIE-ARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWT 392

Query: 88  ------ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
                 A+ G   + + LF QM+  G+ P +      ++AC+ LG+L+ G+ + S + + 
Sbjct: 393 VMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRL 452

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
             +  +   NALI M+++CG V+ A  +F +M     VSW ++IA LA HG G++A+ LF
Sbjct: 453 GHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELF 512

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
           E+M++  + PD + F+ +L+AC+H GL+ +GR YFD+M   +GI P  +HY  ++D+LCR
Sbjct: 513 EQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCR 572

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
           +G   +A   I+ MP EA   IW  L++ C   G ++L      RL+   P  +  Y++L
Sbjct: 573 AGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIIL 632

Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
           S++YA L +W++  ++R +M +RG+KK PG + +E++N ++ F+  D  H + + +Y  L
Sbjct: 633 SNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYL 692

Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
            ++  +MKK GYVP T  VL D+  E KE +L+ HSEKLA+ + ++K P G  IR+ KNL
Sbjct: 693 QQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNL 752

Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           R+C DCH+A K+ISK+  REIVVRDR RFHHFK+
Sbjct: 753 RICGDCHNAFKYISKVVEREIVVRDRKRFHHFKN 786



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 150/376 (39%), Gaps = 83/376 (22%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG-KSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M  YG  P+ FT+  VL A + I D     + +H  V+K        V N L+  Y  C 
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCA 189

Query: 60  GG--------IELGRKVFDEMSERD---------------------------------SV 78
                     +   RKVFDE  +                                    V
Sbjct: 190 SSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDV 249

Query: 79  SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWV 134
           +W+AMI GY R GL  +A D FR+M   G+  DE T  +++SAC      +G    G+ V
Sbjct: 250 AWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQV 309

Query: 135 ESFIEKQMVNRS----VGLCNALIDMFAK------------------------------- 159
             +I + +V  S    + + NALI  + K                               
Sbjct: 310 HGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVN 369

Query: 160 CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
              +++A  +F  M  R +++WT +I+GLA +G G E + LF +M   G+ P D AF G 
Sbjct: 370 AQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGA 429

Query: 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           ++ACS  G +D G++   S     G    +     ++ M  R G V+ A      MP   
Sbjct: 430 ITACSVLGSLDNGQQ-IHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-V 487

Query: 280 NPIIWRTLISACCARG 295
           + + W  +I+A    G
Sbjct: 488 DSVSWNAMIAALAQHG 503



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 142/357 (39%), Gaps = 62/357 (17%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L  G  PN F    ++       ++   + +   + K     DI  + TL+  Y S  G
Sbjct: 31  ILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPK----PDIVARTTLLSAYSS-SG 85

Query: 61  GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            ++L +++F+   ++ RD+VS++AMI  Y+       A++LF QM+  G  PD  T  +V
Sbjct: 86  NVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSV 145

Query: 119 LSACT-----------------DLGALEVGKWVESFI-------EKQMVNRSVGLCNA-- 152
           LSA +                  LG L +     + +          +V  S  + +A  
Sbjct: 146 LSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARK 205

Query: 153 -----------------LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
                            +I  + +  D+  A +L   +     V+W ++I+G    G   
Sbjct: 206 VFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYE 265

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMKNDFGIIPKIEH 251
           EA   F  M   G+  D+  +  L+SAC  C    G+ + GR+    +     ++    H
Sbjct: 266 EAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRT--VVEPSHH 323

Query: 252 Y-----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           +       ++    +  R+ EA     KMP+  + I W  ++S       ++ A SI
Sbjct: 324 FVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSGYVNAQRIEEANSI 379


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/435 (43%), Positives = 280/435 (64%), Gaps = 3/435 (0%)

Query: 43  DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
           +D+   N L+  Y    G  +L R  F  M  RDSVSW+ ++      G   +AI +FR+
Sbjct: 140 NDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFRE 199

Query: 103 MQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
           M  S  C PD +T+V+V+SA   LGAL  G W  +++ ++ +     L +ALI+M++KCG
Sbjct: 200 MLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCG 259

Query: 162 DVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
            ++ A+ +F ++ G R++ +W +++AG   +G    A+ LF  M    + P+ + F  +L
Sbjct: 260 FIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVL 319

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           +ACSH GLV++G +YF  M   +GI P I HYGCMVD+ CR+G  ++A E IQ MP+E +
Sbjct: 320 NACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPD 379

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
             + + L+ AC     L+L + +  RLI       + YVLLS+IYA    W    K+R++
Sbjct: 380 ASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSNIYALDGNWGGVHKVRKL 439

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M  RG+ K PGS+ +EL+  I+EF+ GDKSH + ++IY+ML E+ +++K +GY P TS+V
Sbjct: 440 MLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLGEICQQLKSSGYTPDTSQV 499

Query: 401 LLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYN 459
           LLDI++ED KE +L  HSEKLAIAF L+ T PGTPIR+V NLR+C DCH+A K ISKIY 
Sbjct: 500 LLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCHNAIKLISKIYG 559

Query: 460 REIVVRDRHRFHHFK 474
           R I+VRD +RFHHF+
Sbjct: 560 RCIIVRDANRFHHFR 574


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/465 (40%), Positives = 290/465 (62%), Gaps = 6/465 (1%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +FTY  +L A   I        VH  V+K  +     V   L+  Y    G +E   KVF
Sbjct: 1   EFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL-GKVEEAAKVF 55

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA-L 128
             + ++D V+WSAM+ GYA+ G +  AI +F ++   G+ P+E T  ++L+ C    A +
Sbjct: 56  SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 115

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
             GK    F  K  ++ S+ + +AL+ M+AK G+++ A ++F+    + +VSW S+I+G 
Sbjct: 116 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 175

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A HG+ ++A+ +F+EM +  V  D V F+G+ +AC+H GLV++G +YFD M  D  I P 
Sbjct: 176 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 235

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EH  CMVD+  R+G++++A + I+ MP  A   IWRT+++AC    + +L     +++I
Sbjct: 236 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 295

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             +P   + YVLLS++YA+   W+++ K+R++M++R +KK PG + IE+ N+ Y F+ GD
Sbjct: 296 AMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGD 355

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           +SH    +IY  L+++  ++K  GY P TS VL DI++E KE  L +HSE+LAIAF L+ 
Sbjct: 356 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA 415

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           TP G+P+ I+KNLRVC DCH   K I+KI  REIVVRD +RFHHF
Sbjct: 416 TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHF 460



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 5   GVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           G+ PN+FT+  +L  CA     +  GK  HG  +K +    + V + L+ MY   +G IE
Sbjct: 93  GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK-KGNIE 151

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              +VF    E+D VSW++MI GYA+ G +  A+D+F++M+   V  D +T + V +ACT
Sbjct: 152 SAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACT 211

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM---NGRTIV 179
             G +E G K+ +  +    +  +    + ++D++++ G ++KA+K+  +M    G TI 
Sbjct: 212 HAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI- 270

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
            W +++A   +H +  E   L  E + A  P D  A+V L +  +  G
Sbjct: 271 -WRTILAACRVH-KKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 316


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/460 (40%), Positives = 290/460 (63%), Gaps = 1/460 (0%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
            L+ CA + DL++G  +H  + K     D+   N+L+ MY    G I      FDE++ +
Sbjct: 313 ALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA-GLINEATMFFDEIAVK 371

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           D++S+ A++ G  + G + +A  +F++MQ   + PD  TMV+++ AC+ L AL+ GK   
Sbjct: 372 DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH 431

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             +  + +     +CN+LIDM+AKCG +D + ++F  M  R +VSW ++IAG  +HG G 
Sbjct: 432 GSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA  LF  M   G  PDDV F+ L++ACSH GLV +G+ +FD+M + +GI+P++EHY CM
Sbjct: 492 EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315
           VD+L R G + EA++FIQ MP++A+  +W  L+ AC     + L + +++ +    P   
Sbjct: 552 VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT 611

Query: 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSK 375
            N+VLLS+I++   R+++  ++R +   +G KK PG + IE++  ++ FV GD+SH  S+
Sbjct: 612 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSR 671

Query: 376 EIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPI 435
           +IY  LD +   +KK GY   TS VL D+ EE+KE AL  HSEKLAIAF +L       I
Sbjct: 672 DIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTI 731

Query: 436 RIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + KNLRVC DCH+A K+++ + NR I+VRD +RFHHFK+
Sbjct: 732 FVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKN 771



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 158/312 (50%), Gaps = 8/312 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML + V+PNK+T+PFVLKAC+ + DL  G+++H          D+ V   L+ +Y  C  
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC-A 149

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVL 119
                R VF +M  RD V+W+AM+ GYA  G+   AI     MQ   G+ P+  T+V++L
Sbjct: 150 RFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
                 GAL  G  + ++  +  + ++   V +  AL+DM+AKC  +  A ++F  M  R
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR 269

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREY 235
             V+W+++I G  +  R  EA  LF++ML  G+      +    L  C+    +  G + 
Sbjct: 270 NDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ- 328

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             ++    GI   +     ++ M  ++G + EA  F  ++ ++ + I +  L+S C   G
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNG 387

Query: 296 ELKLAESITKRL 307
           + + A  + K++
Sbjct: 388 KAEEAFLVFKKM 399



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 7/303 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF---QFGDDIHVQNTLVHMYGSCEGG 61
           G+ PN  T   +L   A  G L  G S+H   L+    Q  + + +   L+ MY  C+  
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV-TVLS 120
           +   R VF  M  R+ V+WSA+IGG+      T+A +LF+ M + G+C    T V + L 
Sbjct: 257 VYACR-VFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            C  L  L +G  + + I K  ++  +   N+L+ M+AK G +++A   F  +  +  +S
Sbjct: 316 VCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + ++++G   +G+  EA  +F++M    + PD    V L+ ACSH   +  G+    S+ 
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G+  +      ++DM  + G++  + +   KMP   + + W T+I+     G  K A
Sbjct: 436 IR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHGLGKEA 493

Query: 301 ESI 303
            ++
Sbjct: 494 TTL 496



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 12/236 (5%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L R+VFD +   D+ +++A+I  Y+ LG    AIDL+R M    V P++ T   VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ L  L  G+ + +      ++  + +  ALID++ +C     A  +F  M  R +V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           +W +++AG A HG    A+A   +M +  G+ P+    V LL   +  G + +G      
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 239 M------KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                  +N+  ++        ++DM  +  ++  A      MP+  N + W  LI
Sbjct: 228 CLRACLEQNEEQVLIGT----ALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALI 278


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 294/506 (58%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  T   +L AC+ + DL  G+++HG  ++    +++ V + LV +Y  C   ++ 
Sbjct: 228 GVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLS-VKQ 286

Query: 65  GRKVFDEMSERDSVSWS-----------------------------------AMIGGYAR 89
            R VFD M  RD VSW+                                   A+IGG   
Sbjct: 287 ARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCME 346

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G +  A+++ R+MQ  G  P++IT+ + L AC+ L +L +GK V  ++ +  +   +  
Sbjct: 347 NGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTT 406

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+ M+AKCGD++ +  +F  +  + +V+W ++I   AMHG G E + LFE ML++G+
Sbjct: 407 MTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGI 466

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F G+LS CSH  LV++G + F+SM  D  + P   HY CMVD+  R+GR+ EA+
Sbjct: 467 KPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAY 526

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           EFIQ+MP+E     W  L+ AC     ++LA+    +L   EP +  NYV L +I     
Sbjct: 527 EFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAK 586

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W + ++ R +M +RG+ K PG + +++ + ++ FV GDK++ +S +IY  LDE+G KMK
Sbjct: 587 LWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMK 646

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AGY P T  VL DI++E+K ++L  HSEKLA+AF +L     + IR+ KNLR+C DCH+
Sbjct: 647 SAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHN 706

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K++SK+    I+VRD  RFHHF++
Sbjct: 707 AIKYVSKVVGVTIIVRDSLRFHHFRN 732



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 9/304 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+   +  V KAC   GD +  K VH   ++     D  + N L+H YG C+  +E 
Sbjct: 127 GIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKC-VEG 185

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD++  +D VSW++M   Y   GL    + +F +M  +GV P+ +T+ ++L AC++
Sbjct: 186 ARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSE 245

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L+ G+ +  F  +  +  +V +C+AL+ ++A+C  V +A  +F  M  R +VSW  V
Sbjct: 246 LKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGV 305

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           +     +    + +ALF +M   GV  D+  +  ++  C   G  +K  E    M+N  G
Sbjct: 306 LTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN-LG 364

Query: 245 IIPK---IEHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             P    I  +   C +    R G  KE H ++ +  +  +      L+      G+L L
Sbjct: 365 FKPNQITISSFLPACSILESLRMG--KEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNL 422

Query: 300 AESI 303
           + ++
Sbjct: 423 SRNV 426



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN+ T    L AC+ +  L +GK VH  V +     D+     LV+MY  C G
Sbjct: 360 MQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKC-G 418

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L R VFD +  +D V+W+ MI   A  G   + + LF  M  SG+ P+ +T   VLS
Sbjct: 419 DLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLS 478

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
            C+    +E G  +  S     +V         ++D+F++ G + +A +  + M    T 
Sbjct: 479 GCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTA 538

Query: 179 VSWTSVIAGLAMHGR----GLEAVALFEEMLEAGVPPDDVAFVGLL 220
            +W +++    ++       + A  LFE  +E   P + V+   +L
Sbjct: 539 SAWGALLGACRVYKNVELAKISANKLFE--IEPNNPGNYVSLFNIL 582


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/444 (44%), Positives = 279/444 (62%), Gaps = 17/444 (3%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI- 105
           V N+LVH Y SC G       VF  + +R  VSW+  +   A  G    A+DLFR+MQ  
Sbjct: 101 VANSLVHFYASC-GRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 106 -SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM--------VNRSVGLCNALIDM 156
              + PD  T+ +VL AC   GAL +G +  + + +++        V+R V + N+L+D+
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDL 219

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVA 215
           + KCG V+ A ++F  M+ R + SW +++  LA HGR  +++ LF+ M    G+ P+ + 
Sbjct: 220 YGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAIT 279

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FV +LSAC+H GLVD+GR YF +M +D GI P+IEHYGCMVD+L R+G ++EA + +  M
Sbjct: 280 FVAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGM 339

Query: 276 PIEANPIIWRTLISACCARGE-LKLAESITKRLIGNEPMHESN-YVLLSHIYAKLLRWEK 333
               + IIWR+L+ ACC R   L+L+E++ K  +       S  YVLLS +YA   RW  
Sbjct: 340 NCRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWND 399

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
              IR++M + G KK PG + IE+D  +++FV GD SH QS+EIY  LDE+ +++  AGY
Sbjct: 400 VGMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGY 459

Query: 394 VPTTSE--VLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
            P  SE  ++ DI+   K   L  HSE+LAI+F LL   PG PIRI+KNLRVC DCH+ +
Sbjct: 460 KPDLSEAPMVADIDRT-KGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTIS 518

Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
           K ISK+YN EI+VRDR RFHHFKD
Sbjct: 519 KLISKLYNVEIIVRDRIRFHHFKD 542



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 28/258 (10%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG--------DDIHVQNTLVHMYGS 57
           ++P+ +T   VL ACA  G L+LG   H  +L+   G         D+ + N+LV +YG 
Sbjct: 163 LAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLYGK 222

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMV 116
           C G +EL R+VFD MSERD  SW+AM+   A  G   D++DLF +M ++ G+ P+ IT V
Sbjct: 223 C-GAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFV 281

Query: 117 TVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
            VLSAC   G ++ G ++  + +    +   +     ++D+ A+ G +++AL +   MN 
Sbjct: 282 AVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNC 341

Query: 176 RT-IVSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           R   + W S++        GLE   L E M  L   VP D V+ V +L +          
Sbjct: 342 RPDSIIWRSLLDACCKRNAGLE---LSEAMAKLALDVPDDAVSGVYVLLS---------- 388

Query: 233 REYFDSMK-NDFGIIPKI 249
           R Y  + + ND G+I ++
Sbjct: 389 RVYASAQRWNDVGMIRQL 406


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/442 (44%), Positives = 274/442 (61%), Gaps = 15/442 (3%)

Query: 49  NTLVHMYGSCE---GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
           N L++M   C          R +F ++ + +   W+ MI G        DAI+ +  M+ 
Sbjct: 46  NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105

Query: 106 SGVCPDEITMVTVLSACTDLGALEVG---------KWVESFIEKQMVNRSVGLCNALIDM 156
            G  P+  T   VL AC  L  L++G         +W+   I +  + R+V +  +L+DM
Sbjct: 106 EGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDM 165

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML---EAGVPPDD 213
           +AKCG+++KA  +F  M  + IVSW ++I G A++G   EA+ LF +M    + G+ PD 
Sbjct: 166 YAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDG 225

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
             F+GLL  C+H GLVD+GR YF+SM   F + P IEHYGCMVD+L R+G + EAH+ I+
Sbjct: 226 NTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIR 285

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP+EAN I+W  L+ AC    + +LAE   K+LI  EP +  NYVLLS+IY+  L+W++
Sbjct: 286 NMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDE 345

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             K+R  M+++ ++K PG + IE+D  ++EF+ GDK H  S++IY  LDE+ +KMK AGY
Sbjct: 346 AAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGY 405

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VPTT  VL DI EE+KE  L  HSEKLAIAF L+   P   IR+VKNLRVC DCH A K 
Sbjct: 406 VPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKL 465

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           IS I  REI VRD +RFH F++
Sbjct: 466 ISSITGREITVRDNNRFHCFRE 487



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 15/205 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK-------FQFG--DDIHVQNTL 51
           M   G  PN FT+PFVLKACA + DL LG  +H  V+K        + G   ++ V  +L
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSL 162

Query: 52  VHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GV 108
           V MY  C G +E  R VFD M E+D VSW AMI GYA  GL  +AIDLF QMQ     G+
Sbjct: 163 VDMYAKC-GNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGI 221

Query: 109 CPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
            PD  T + +L  CT  G ++ G ++  S      +  S+     ++D+  + G +D+A 
Sbjct: 222 KPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAH 281

Query: 168 KLFRSMNGR-TIVSWTSVIAGLAMH 191
           +L R+M      + W +++    +H
Sbjct: 282 QLIRNMPMEANAIVWGALLGACRIH 306


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 279/441 (63%), Gaps = 14/441 (3%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           V N+LVH Y SC G       VF  + +R  VSW+  +   A  G    A+DLFR+MQ  
Sbjct: 101 VANSLVHFYASC-GRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 107 --GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAK 159
              + PD  T+ +VL AC   GAL +G +  + + +++     V+R V + N+L+D++ K
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGK 219

Query: 160 CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVG 218
           CG V+ A ++F  M+ R + SW +++  LA HGR  +++ LF+ M    G+ P+ + FV 
Sbjct: 220 CGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVA 279

Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
           +LSAC+H GLVD+GR YF +M ++ GI P+IEHYGCMVD+L R+G ++EA + +  M   
Sbjct: 280 VLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCR 339

Query: 279 ANPIIWRTLISACCARGE-LKLAESITKRLIGNEPMHESN-YVLLSHIYAKLLRWEKKTK 336
            + IIWR+L+ ACC R   L+L+E++ K  +       S  YVLLS +YA   RW     
Sbjct: 340 PDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGM 399

Query: 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396
           IR++M + G KK PG + IE+D  +++FV GD SH QS+EIY  LDE+ +++  AGY P 
Sbjct: 400 IRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPD 459

Query: 397 TSE--VLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
            SE  ++ DI+   K   L  HSE+LAI+F LL   PG PIRI+KNLRVC DCH+ +K I
Sbjct: 460 LSEAPMVADIDRT-KGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLI 518

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           SK+YN EI+VRDR RFHHFKD
Sbjct: 519 SKLYNVEIIVRDRIRFHHFKD 539



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 25/255 (9%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-----DDIHVQNTLVHMYGSCEG 60
           ++P+ +T   VL ACA  G L+LG   H  +L+   G      D+ + N+LV +YG C G
Sbjct: 163 LAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKC-G 221

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            +EL R+VFD MSERD  SW+AM+   A  G   D++DLF +M ++ G+ P+ IT V VL
Sbjct: 222 AVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVL 281

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           SAC   G ++ G ++  + + +  +   +     ++D+ A+ G +++AL +   MN R  
Sbjct: 282 SACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPD 341

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
            + W S++        GLE   L E M  L   VP D V+ V +L +          R Y
Sbjct: 342 SIIWRSLLDACCKRNAGLE---LSEAMAKLALDVPDDAVSGVYVLLS----------RVY 388

Query: 236 FDSMK-NDFGIIPKI 249
             + + ND G+I ++
Sbjct: 389 ASAQRWNDVGMIRQL 403


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 283/471 (60%), Gaps = 2/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           GVS N  T   VL AC   GDL   GK +H  ++   F  D HV+N+L+ MY  C G + 
Sbjct: 441 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKC-GDLS 499

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             + +F+ +  R+ ++W+AM+   A  G   + + L  +M+  GV  D+ +    LSA  
Sbjct: 500 SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 559

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  LE G+ +     K        + NA  DM++KCG++ + +K+      R++ SW  
Sbjct: 560 KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 619

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+ L  HG   E  A F EMLE G+ P  V FV LL+ACSH GLVDKG  Y+D +  DF
Sbjct: 620 LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 679

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+ P IEH  C++D+L RSGR+ EA  FI KMP++ N ++WR+L+++C   G L      
Sbjct: 680 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 739

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            + L   EP  +S YVL S+++A   RWE    +R+ M  + +KK    + ++L +++  
Sbjct: 740 AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSS 799

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD++H Q+ EIY  L+++ + +K++GYV  TS+ L D +EE KE  L  HSE+LA+A
Sbjct: 800 FGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALA 859

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +AL+ TP G+ +RI KNLR+C+DCHS  KF+S++  R IV+RD++RFHHF+
Sbjct: 860 YALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFE 910



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G S N  T+   L AC        G+ +HG V+      +  + N LV MYG   G
Sbjct: 336 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI-G 394

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+V  +M  RD V+W+A+IGGYA       A+  F+ M++ GV  + IT+V+VLS
Sbjct: 395 EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLS 454

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G  LE GK + ++I          + N+LI M+AKCGD+  +  LF  ++ R I+
Sbjct: 455 ACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNII 514

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W +++A  A HG G E + L  +M   GV  D  +F   LSA +   ++++G++     
Sbjct: 515 TWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL---- 570

Query: 240 KNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPII--WRTLISACCA 293
            +   +    EH    +    DM  + G + E    ++ +P   N  +  W  LISA   
Sbjct: 571 -HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV---VKMLPPSVNRSLPSWNILISALGR 626

Query: 294 RG 295
            G
Sbjct: 627 HG 628



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 9/287 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+ +   V+ +C  + D +LG+ + G V+K      + V+N+L+ M GS  G ++ 
Sbjct: 138 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSM-GNVDY 196

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +FD+MSERD++SW+++   YA+ G   ++  +F  M+      DE+   TV +  + 
Sbjct: 197 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSV 253

Query: 125 LGALEVGKW---VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           LG ++  KW   +   + K   +  V +CN L+ M+A  G   +A  +F+ M  + ++SW
Sbjct: 254 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 313

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S++A     GR L+A+ L   M+ +G   + V F   L+AC      +KGR     +  
Sbjct: 314 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVV 372

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             G+         +V M  + G + E+   + +MP   + + W  LI
Sbjct: 373 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALI 418



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + G+ P+ F    ++ AC   G +   G  VHG V K     D++V   ++H+YG   
Sbjct: 32  MCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYG-VY 90

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RKVF+EM +R+ VSW++++ GY+  G   + ID+++ M+  GV  +E +M  V+
Sbjct: 91  GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVI 150

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S+C  L    +G+ +   + K  +   + + N+LI M    G+VD A  +F  M+ R  +
Sbjct: 151 SSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 210

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+ A  A +G   E+  +F  M       +      LLS   H      GR      
Sbjct: 211 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGR------ 264

Query: 240 KNDFGIIPKI--EHYGCMVDMLCR----SGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               G++ K+  +   C+ + L R    +GR  EA+   ++MP + + I W +L+++   
Sbjct: 265 -GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVN 322

Query: 294 RG 295
            G
Sbjct: 323 DG 324



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 3/228 (1%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL-EV 130
           M  R+ VSW+ M+ G  R+GL  + ++ FR+M   G+ P    + ++++AC   G++   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           G  V  F+ K  +   V +  A++ ++   G V  + K+F  M  R +VSWTS++ G + 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
            G   E + +++ M   GV  ++ +   ++S+C        GR+    +    G+  K+ 
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS-GLESKLA 179

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
               ++ ML   G V  A+    +M  E + I W ++ +A    G ++
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIE 226


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/476 (40%), Positives = 286/476 (60%), Gaps = 2/476 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCE 59
           M   G   + F    +++AC  +     GK+ HG  +K  F D +  +Q +LV MY  C 
Sbjct: 205 MRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKC- 263

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++   K+F+E+S RD V WSA+I G+AR G + ++I +FRQM    V P+ +T  +++
Sbjct: 264 GFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV 323

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC+ LG+L+ G+ V  ++ +  V   V    + IDM+AKCG +  A ++F  +  + + 
Sbjct: 324 LACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVF 383

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW+++I G  MHG   EA+ LF EM      P+ V FV +LSACSH G +++G  +F SM
Sbjct: 384 SWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+GI P  EHY CMVD+L R+G++ EA  FI  MP E     W  L+ AC      +L
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAEL 503

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE + K+L+  E      YV+LS+IYA +  WE   K R  M ++G+ KI G T IE++ 
Sbjct: 504 AEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEE 563

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           ++Y F   D+  +++ +I  + + +  +M++ GYVP    VL D+++E K++ L  HSEK
Sbjct: 564 KLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEK 623

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAI F LL +  G PIRI KN+RVC DCH+A+KFIS I  R+I++RD  RFHH +D
Sbjct: 624 LAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQD 679



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 119/308 (38%), Gaps = 45/308 (14%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + +  K F+ ++  +  SW+ ++  +++     D + LF++M   G   D   +V  +
Sbjct: 61  GSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAV 120

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L   +  K   S   K  +     +  AL++++ + G +++A K+F  +  +  V
Sbjct: 121 KACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSV 180

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-------------- 225
            W  +I G            LF  M  +G   D     GL+ AC +              
Sbjct: 181 IWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLC 240

Query: 226 ----------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
                                 CG +D   + F+ +     ++     +  ++    R+G
Sbjct: 241 IKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVV-----WSAIIAGFARNG 295

Query: 264 RVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHESNYV 319
           R  E+    ++M    +  N + + +++ AC + G LK   S+   +I N   +   NY 
Sbjct: 296 RALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYT 355

Query: 320 LLSHIYAK 327
               +YAK
Sbjct: 356 SFIDMYAK 363



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           ++RS+     +   + + G +  A K F  +    + SW +++A  + +    + + LF+
Sbjct: 43  LHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFK 102

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
            ML+ G   D    V  + AC    L  +G + F S+     +         ++++    
Sbjct: 103 RMLKEGKLVDSFNLVFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVAPALMNVYTEL 161

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           G ++EAH+  +++P++ N +IW  +I     +G L  +E
Sbjct: 162 GSLEEAHKVFEEVPLK-NSVIWGVMI-----KGHLNFSE 194


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/502 (39%), Positives = 297/502 (59%), Gaps = 33/502 (6%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-- 59
           L + + P+      VL+ C    DL      H  V+   F     +  +L+  Y  C   
Sbjct: 62  LTFVLLPDPTVLHRVLERCRVSTDLKTATKTHARVVVLGFATYPSLVASLISTYAQCHRP 121

Query: 60  --------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS 93
                                     G  ++ +KVF +MS RD V+W++MIGGY R    
Sbjct: 122 HIALHVFSRILDLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRF 181

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            DA+ +FR+M  + V PD  T  +V++AC  LGAL   KWV   + ++ V  +  L  AL
Sbjct: 182 FDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAAL 241

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM+AKCG +D + ++F  +    +  W ++I+GLA+HG  ++A  +F  M    V PD 
Sbjct: 242 IDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDS 301

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           + F+G+L+ACSHCGLV++GR+YF  M+N F I P++EHYG MVD+L R+G ++EA+  I+
Sbjct: 302 ITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIK 361

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHIYAKLLRWE 332
           +M +E + +IWR L+SAC    + +L E      I N    ES ++VLLS++Y  L  W+
Sbjct: 362 EMRMEPDIVIWRALLSACRIHRKKELGEVA----IANISRLESGDFVLLSNMYCSLNNWD 417

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              ++R +M  RG++K  G + +EL + I++F    +SH + K IY +L+ + ++ K  G
Sbjct: 418 GAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEG 477

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           + P T  VL+D++EE+KE+ L  HSEKLA+A+A+LKT PGT IRI KNLR+C DCH+  K
Sbjct: 478 FTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIK 537

Query: 453 FISKIYNREIVVRDRHRFHHFK 474
            +SKI NR+I+VRDR RFH F+
Sbjct: 538 IVSKILNRKIIVRDRIRFHQFE 559



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 109/194 (56%), Gaps = 5/194 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P+ FT+  V+ ACA +G L   K VHG +++ +   +  +   L+ MY  C G
Sbjct: 191 MLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKC-G 249

Query: 61  GIELGRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            I++ R+VF+E++ RD VS W+AMI G A  GL+ DA  +F +M++  V PD IT + +L
Sbjct: 250 RIDVSRQVFEEVA-RDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGIL 308

Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           +AC+  G +E G K+      + M+   +     ++D+  + G +++A  + + M     
Sbjct: 309 TACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRMEPD 368

Query: 178 IVSWTSVIAGLAMH 191
           IV W ++++   +H
Sbjct: 369 IVIWRALLSACRIH 382


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/467 (40%), Positives = 277/467 (59%), Gaps = 1/467 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+ T   VLK+ A    +   + VH    K     D HV N L+  Y  C G ++   KV
Sbjct: 408 NRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKC-GQLDYAIKV 466

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F E    D +S + M+   ++     DAI LF QM   G+ PD   + ++L+ACT L A 
Sbjct: 467 FKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E GK V + + K+     V   NAL+  +AKCG ++ A   F  +  R IVSW+++I GL
Sbjct: 527 EQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGL 586

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
           A HG G  A+ LF  ML+ GV P+ +    +LSAC+H GLVD  ++YF+SMK  FGI   
Sbjct: 587 AQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRT 646

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
            EHY CM+D+L R+G++++A E +  MP +AN  +W  L+ A     + +L     ++L 
Sbjct: 647 EEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLF 706

Query: 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
             EP     +VLL++ YA    W++  K+R++M    +KK P  + +E+ ++++ F+ GD
Sbjct: 707 TLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGD 766

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           KSH  +++IY  L E+G  M KAGYVP     L D++  +KE  L+ HSE+LA+AFAL+ 
Sbjct: 767 KSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALIS 826

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           TP G PIR+ KNLR+C DCH A K+ISKI +REI++RD +RFHHF +
Sbjct: 827 TPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTN 873



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 10/307 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+F  P VLK CA   D+  G  VH   +  +   D+ V N LV +YG   G ++ 
Sbjct: 98  GVPCNEFALPVVLK-CAP--DVRFGAQVHALAVATRLVHDVFVANALVAVYGGF-GMVDE 153

Query: 65  GRKVFDEM----SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            R++FDE      ER++VSW+ MI  Y +   S DAI +FR+M  SG  P+E     V++
Sbjct: 154 ARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVN 213

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT    LE G+ V   + +    + V   NAL+DM++K GD++ A  +F  M    +VS
Sbjct: 214 ACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVS 273

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W + I+G   HG    A+ L  +M  +G+ P+      +L AC+  G  + GR+    M 
Sbjct: 274 WNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV 333

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                  +    G +VDM  + G + +A +    MP   + I+W  LIS C   G     
Sbjct: 334 KAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGCSHDGRHGEV 391

Query: 301 ESITKRL 307
            S+  R+
Sbjct: 392 LSLFHRM 398



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 1/212 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G  PN+F +  V+ AC G  DL  G+ VHGAV++  +  D+   N LV MY    G
Sbjct: 196 MVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL-G 254

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE+   VF++M   D VSW+A I G    G    A++L  QM+ SG+ P+  T+ +VL 
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA  +G+ +  F+ K + +    +   L+DM+AK G +D A K+F  M  R ++ 
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           W ++I+G +  GR  E ++LF  M + G+  D
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ F    +L AC  +     GK VH  ++K QF  D+   N LV+ Y  C G
Sbjct: 501 MLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKC-G 559

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  + ER  VSWSAMIGG A+ G    A+DLF +M   GV P+ IT+ +VLS
Sbjct: 560 SIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLS 619

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G + +  K+ ES  E   ++R+      +ID+  + G ++ A++L  +M  +   
Sbjct: 620 ACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANA 679

Query: 180 S-WTSVIAGLAMH 191
           + W +++    +H
Sbjct: 680 AVWGALLGASRVH 692



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG 107
            N L+ +Y  C       R VFDE+ +   VSWS+++  Y+  G+  DA+  FR M+  G
Sbjct: 40  SNHLLTLYSRCRLP-SAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRG 98

Query: 108 VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167
           V  +E  +  VL    D   +  G  V +      +   V + NAL+ ++   G VD+A 
Sbjct: 99  VPCNEFALPVVLKCAPD---VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEAR 155

Query: 168 KLFRSMNG----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           ++F    G    R  VSW ++I+    + +  +A+ +F EM+ +G  P++  F  +++AC
Sbjct: 156 RMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNAC 215

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           +    ++ GR+   ++    G    +     +VDM  + G ++ A    +KMP  A+ + 
Sbjct: 216 TGSRDLEAGRQVHGAVVRT-GYEKDVFTANALVDMYSKLGDIEMAATVFEKMP-AADVVS 273

Query: 284 WRTLISACCARG 295
           W   IS C   G
Sbjct: 274 WNAFISGCVTHG 285


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 292/470 (62%), Gaps = 2/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G SP+++T   V    AG+  +++G+ +HG  +K+    D+ V ++L HMY    G ++ 
Sbjct: 86  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMR-NGKLQD 144

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G  V   M  R+ V+W+ +I G A+ G     + L++ M+ISG  P++IT VTVLS+C+D
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ + +   K   +  V + ++LI M++KCG +  A K F        V W+S+
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 185 IAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I+    HG+G EA+ LF  M E   +  ++VAF+ LL ACSH GL DKG E FD M   +
Sbjct: 265 ISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G  P ++HY C+VD+L R+G + +A   I+ MPI+ +P+IW+TL+SAC      ++A+ +
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKV 384

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            K ++  +P   + YVLL++++A   RW   +++R+ M  + +KK  G +  E   E+++
Sbjct: 385 FKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD+S  +SKEIY  L E+  +MK  GY P T+ VL D++EE+KE  L +HSEKLA+A
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           FAL+  P G PIRI+KNLRVC+DCH A K+IS I NREI +RD  RFHHF
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHF 554



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 149/305 (48%), Gaps = 9/305 (2%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +GDL    +++  + K  F       N L++ Y    G +   RKVFDEM +R   +W+A
Sbjct: 7   LGDLPSAVALYERMRKKNFMS----SNILINGYVRA-GDLVSARKVFDEMPDRKLTTWNA 61

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI G  +   + + + LFR+M   G  PDE T+ +V S    L ++ +G+ +  +  K  
Sbjct: 62  MIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYG 121

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +   + + ++L  M+ + G +     + RSM  R +V+W ++I G A +G     + L++
Sbjct: 122 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK 181

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            M  +G  P+ + FV +LS+CS   +  +G++ + +++K   G    +     ++ M  +
Sbjct: 182 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK--IGASSVVAVVSSLISMYSK 239

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
            G + +A +   +   E + ++W ++ISA    G+   A  +   +     M  +    L
Sbjct: 240 CGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFL 298

Query: 322 SHIYA 326
           + +YA
Sbjct: 299 NLLYA 303


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 283/471 (60%), Gaps = 2/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
           GVS N  T   VL AC   GDL   GK +H  ++   F  D HV+N+L+ MY  C G + 
Sbjct: 458 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKC-GDLS 516

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             + +F+ +  R+ ++W+AM+   A  G   + + L  +M+  GV  D+ +    LSA  
Sbjct: 517 SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 576

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  LE G+ +     K        + NA  DM++KCG++ + +K+      R++ SW  
Sbjct: 577 KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 636

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+ L  HG   E  A F EMLE G+ P  V FV LL+ACSH GLVDKG  Y+D +  DF
Sbjct: 637 LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 696

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G+ P IEH  C++D+L RSGR+ EA  FI KMP++ N ++WR+L+++C   G L      
Sbjct: 697 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 756

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            + L   EP  +S YVL S+++A   RWE    +R+ M  + +KK    + ++L +++  
Sbjct: 757 AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSS 816

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD++H Q+ EIY  L+++ + +K++GYV  TS+ L D +EE KE  L  HSE+LA+A
Sbjct: 817 FGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALA 876

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +AL+ TP G+ +RI KNLR+C+DCHS  KF+S++  R IV+RD++RFHHF+
Sbjct: 877 YALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFE 927



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G S N  T+   L AC        G+ +HG V+      +  + N LV MYG   G
Sbjct: 353 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI-G 411

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+V  +M  RD V+W+A+IGGYA       A+  F+ M++ GV  + IT+V+VLS
Sbjct: 412 EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLS 471

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G  LE GK + ++I          + N+LI M+AKCGD+  +  LF  ++ R I+
Sbjct: 472 ACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNII 531

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W +++A  A HG G E + L  +M   GV  D  +F   LSA +   ++++G++     
Sbjct: 532 TWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL---- 587

Query: 240 KNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPII--WRTLISACCA 293
            +   +    EH    +    DM  + G + E    ++ +P   N  +  W  LISA   
Sbjct: 588 -HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV---VKMLPPSVNRSLPSWNILISALGR 643

Query: 294 RG 295
            G
Sbjct: 644 HG 645



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 9/287 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  N+ +   V+ +C  + D +LG+ + G V+K      + V+N+L+ M GS  G ++ 
Sbjct: 155 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSM-GNVDY 213

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +FD+MSERD++SW+++   YA+ G   ++  +F  M+      DE+   TV +  + 
Sbjct: 214 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSV 270

Query: 125 LGALEVGKW---VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
           LG ++  KW   +   + K   +  V +CN L+ M+A  G   +A  +F+ M  + ++SW
Sbjct: 271 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 330

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            S++A     GR L+A+ L   M+ +G   + V F   L+AC      +KGR     +  
Sbjct: 331 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVV 389

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             G+         +V M  + G + E+   + +MP   + + W  LI
Sbjct: 390 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALI 435



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M + G+ P+ F    ++ AC   G +   G  VHG V K     D++V   ++H+YG   
Sbjct: 49  MCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYG-VY 107

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RKVF+EM +R+ VSW++++ GY+  G   + ID+++ M+  GV  +E +M  V+
Sbjct: 108 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVI 167

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S+C  L    +G+ +   + K  +   + + N+LI M    G+VD A  +F  M+ R  +
Sbjct: 168 SSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 227

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+ A  A +G   E+  +F  M       +      LLS   H      GR      
Sbjct: 228 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGR------ 281

Query: 240 KNDFGIIPKI--EHYGCMVDMLCR----SGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
               G++ K+  +   C+ + L R    +GR  EA+   ++MP + + I W +L+++   
Sbjct: 282 -GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVN 339

Query: 294 RG 295
            G
Sbjct: 340 DG 341



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 3/240 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++  R +FD M  R+ VSW+ M+ G  R+GL  + ++ FR+M   G+ P    + +++
Sbjct: 6   GRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLV 65

Query: 120 SACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +AC   G++   G  V  F+ K  +   V +  A++ ++   G V  + K+F  M  R +
Sbjct: 66  TACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNV 125

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWTS++ G +  G   E + +++ M   GV  ++ +   ++S+C        GR+    
Sbjct: 126 VSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQ 185

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +    G+  K+     ++ ML   G V  A+    +M  E + I W ++ +A    G ++
Sbjct: 186 VVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIE 243


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/476 (40%), Positives = 286/476 (60%), Gaps = 9/476 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV+PNK T    L ACA +GDL  G  +H  V        + V   LV++YG C G IE 
Sbjct: 157 GVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKC-GRIEA 215

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + F ++ E++ V+WSA+   YAR   + DAI +  +M + G+ P+  T V+VL AC  
Sbjct: 216 AVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAA 275

Query: 125 LGALEVGKWVESFIEKQMV-----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           + AL+ G+ +    E+  V        V +  AL++M++KCG++  A  +F  +    +V
Sbjct: 276 IAALKQGRRIH---ERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLV 332

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            W S+IA  A HG+  +A+ LFE M   G+ P  + F  +L ACSH G++D+GR++F S 
Sbjct: 333 LWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSF 392

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D GI P+ EH+GCMVD+L R+G + ++ + +  MP E +P+ W   + AC     +  
Sbjct: 393 IGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDR 452

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A    + L   +P   + YVLLS++YAK  RW    ++R+ M      K  G + IE+ +
Sbjct: 453 AIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKD 512

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EF+ GD  H +  EI+  L  + + MK+AGYVP T  VL D+ +E KE  +  HSEK
Sbjct: 513 RVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEK 572

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AFALL TP G+PIR+VKNLRVCNDCH+A+KFISK+ NREIVVRD +RFH F++
Sbjct: 573 LAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQN 628



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 160/308 (51%), Gaps = 3/308 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G++P +      L AC    ++ +G+S+  A+L     ++  VQ  LV MYG   G
Sbjct: 52  MLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKL-G 110

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                  VF  MS RD V+WSAM+  YAR G   +A+ LFRQM + GV P+++T+V+ L 
Sbjct: 111 HCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 170

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  LG L  G  +   +E Q +   V +  AL++++ KCG ++ A++ F  +  + +V+
Sbjct: 171 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVA 230

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++ A  A + R  +A+ +   M   G+ P+   FV +L AC+    + +GR   +  +
Sbjct: 231 WSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQ 290

Query: 241 N-DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G+   +     +V+M  + G +  A +   K+    + ++W +LI+     G+ + 
Sbjct: 291 VLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEK 349

Query: 300 AESITKRL 307
           A  + +R+
Sbjct: 350 ALELFERM 357



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 3/237 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G I   RK FDEM   D VSW+A+I  Y            FR M + G+ P E+ +   L
Sbjct: 9   GNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFL 68

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SACTD   + +G+ ++  I    +     +  AL+ M+ K G    A  +F  M+ R +V
Sbjct: 69  SACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVV 128

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W++++A  A +G   EA+ LF +M   GV P+ V  V  L AC+  G +  G      +
Sbjct: 129 AWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRV 188

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +   GI   +     +V++  + GR++ A E   ++ +E N + W + ISA  AR +
Sbjct: 189 EAQ-GIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAW-SAISAAYARND 242



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 33/188 (17%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           ++  +++ G++    K F  M    IVSW ++IA    +         F  ML  G+ P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 213 DVAFVGLLSACSHCGLVDKGREY------------------FDSMKNDFG-------IIP 247
           +V     LSAC+    +  GR                      SM    G       +  
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 248 KIEH-----YGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCARGELKL 299
           ++ H     +  MV    R+G  +EA    ++M ++    N +   + + AC + G+L+ 
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 300 AESITKRL 307
              + +R+
Sbjct: 181 GALMHQRV 188


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/476 (39%), Positives = 293/476 (61%), Gaps = 14/476 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  +  F LKA A   D +    +H  VL+     D+ +  TL+  Y  C G +   RK
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKC-GDLASARK 167

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ------ISGVCPDEITMVTVLSA 121
           VFDEM+ RD  +W++++ G A+      A+ LF ++        S   P+E+T+V  LSA
Sbjct: 168 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSA 227

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV 179
           C  +G L+ G +V  F ++  ++R+V +CN+LIDM++KCG + +AL +F S+    +T+V
Sbjct: 228 CAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLV 287

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I   +MHG G +A+ LF+EM    + PD V ++ +L  C+H GLVD G   F+SM
Sbjct: 288 SYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM 346

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ +  MP  A+ ++W+TL+ A    G ++L
Sbjct: 347 R----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVEL 402

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+D 
Sbjct: 403 AELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDG 462

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  L+++  ++ + GY P TS VL DI EE+K+ AL  HSEK
Sbjct: 463 VMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEK 522

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  +R++KNLR+C DCH   K ISK Y R IV+RDR RFH F+D
Sbjct: 523 LAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFED 578


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 293/491 (59%), Gaps = 35/491 (7%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---------------- 59
           +L+AC    D       H  ++KF +G    +  +LV  Y  C+                
Sbjct: 26  ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWG 85

Query: 60  ----------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
                           G  +  ++VF +M  RD V+W++MIGG  R     +A+  FR+M
Sbjct: 86  FDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREM 145

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
             S V PD  T  +V++ C  LG+    + V   + ++ +  +  L +ALID+++KCG +
Sbjct: 146 LNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 205

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A K+F S+    +  W S+I GLA+HG  L+A+ +F +M    V PD + F+G+L+AC
Sbjct: 206 NTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTAC 265

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SHCGLV++GR YFD M+  + I P++EHYG MVD+L R+G V+EA+  I+ MP+E + +I
Sbjct: 266 SHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVI 325

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           WR L+SAC      +L E    ++     ++  +Y+LLS++Y  L +W+   ++RE+M +
Sbjct: 326 WRALLSACRNFKNPELGEVAIAKI---SHLNSGDYILLSNMYCSLEKWDSAERVREMMKR 382

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G++K  G + +EL   I++F  GD+SH ++  IY++L+ + R+ K  G++P T  VL+D
Sbjct: 383 DGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMD 442

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           +++E++E+ LN HSEKLA+A+ +LKT PGT IR+ KNLR C+DCH   K +S++ +R I+
Sbjct: 443 VSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVII 502

Query: 464 VRDRHRFHHFK 474
           VRDR RFH F+
Sbjct: 503 VRDRIRFHQFE 513



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P+ FT+  V+  CA +G  +  + VHG +++ +   +  + + L+ +Y  C G
Sbjct: 145 MLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKC-G 203

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   +KVF+ +   D   W++MI G A  GL+ DAI +F QM++  V PD IT + +L+
Sbjct: 204 RINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILT 263

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G +E G+     + +   +   +    A++D+  + G V++A  + ++M     I
Sbjct: 264 ACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDI 323

Query: 179 VSWTSVIAG 187
           V W ++++ 
Sbjct: 324 VIWRALLSA 332


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 283/471 (60%), Gaps = 2/471 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDL-NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
            GVS N  T   VL AC   GDL   GK +H  ++   F  D HV+N+L+ MY  C G + 
Sbjct: 548  GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKC-GDLS 606

Query: 64   LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              + +F+ +  R+ ++W+AM+   A  G   + + L  +M+  GV  D+ +    LSA  
Sbjct: 607  SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 666

Query: 124  DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
             L  LE G+ +     K        + NA  DM++KCG++ + +K+      R++ SW  
Sbjct: 667  KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 726

Query: 184  VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
            +I+ L  HG   E  A F EMLE G+ P  V FV LL+ACSH GLVDKG  Y+D +  DF
Sbjct: 727  LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 786

Query: 244  GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            G+ P IEH  C++D+L RSGR+ EA  FI KMP++ N ++WR+L+++C   G L      
Sbjct: 787  GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 846

Query: 304  TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             + L   EP  +S YVL S+++A   RWE    +R+ M  + +KK    + ++L +++  
Sbjct: 847  AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSS 906

Query: 364  FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
            F  GD++H Q+ EIY  L+++ + +K++GYV  TS+ L D +EE KE  L  HSE+LA+A
Sbjct: 907  FGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALA 966

Query: 424  FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            +AL+ TP G+ +RI KNLR+C+DCHS  KF+S++  R IV+RD++RFHHF+
Sbjct: 967  YALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFE 1017



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G S N  T+   L AC        G+ +HG V+      +  + N LV MYG   G
Sbjct: 443 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI-G 501

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R+V  +M  RD V+W+A+IGGYA       A+  F+ M++ GV  + IT+V+VLS
Sbjct: 502 EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLS 561

Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G  LE GK + ++I          + N+LI M+AKCGD+  +  LF  ++ R I+
Sbjct: 562 ACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNII 621

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W +++A  A HG G E + L  +M   GV  D  +F   LSA +   ++++G++     
Sbjct: 622 TWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQL---- 677

Query: 240 KNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPII--WRTLISACCA 293
            +   +    EH    +    DM  + G + E    ++ +P   N  +  W  LISA   
Sbjct: 678 -HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV---VKMLPPSVNRSLPSWNILISALGR 733

Query: 294 RG 295
            G
Sbjct: 734 HG 735



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 25  DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
           D +LG+ + G V+K      + V+N+L+ M GS  G ++    +FD+MSERD++SW+++ 
Sbjct: 265 DESLGRQIIGQVVKSGLESKLAVENSLISMLGSM-GNVDYANYIFDQMSERDTISWNSIA 323

Query: 85  GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW---VESFIEKQ 141
             YA+ G   ++  +F  M+      DE+   TV +  + LG ++  KW   +   + K 
Sbjct: 324 AAYAQNGHIEESFRIFSLMR---RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM 380

Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
             +  V +CN L+ M+A  G   +A  +F+ M  + ++SW S++A     GR L+A+ L 
Sbjct: 381 GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 440

Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
             M+ +G   + V F   L+AC      +KGR     +    G+         +V M  +
Sbjct: 441 CSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSMYGK 499

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLI 288
            G + E+   + +MP   + + W  LI
Sbjct: 500 IGEMSESRRVLLQMP-RRDVVAWNALI 525



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 30/301 (9%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N  T   +L     +     G+ +HG V+K  F   + V NTL+ MY      +E    V
Sbjct: 350 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-ANLV 408

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F +M  +D +SW++++  +   G S DA+ L   M  SG   + +T  + L+AC      
Sbjct: 409 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 468

Query: 129 EVGKWVESF--IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           E G+ +     +     N+ +G  NAL+ M+ K G++ ++ ++   M  R +V+W ++I 
Sbjct: 469 EKGRILHGLVVVSGLFYNQIIG--NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 526

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC------------SHCGLVDKGRE 234
           G A      +A+A F+ M   GV  + +  V +LSAC             H  +V  G E
Sbjct: 527 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 586

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
             + +KN             ++ M  + G +  + +    +    N I W  +++A    
Sbjct: 587 SDEHVKNS------------LITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 633

Query: 295 G 295
           G
Sbjct: 634 G 634



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 20/275 (7%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G++VH   +K      +   NTL++MY    G ++  R +FD M  R+ VSW+ M+ G  
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKF-GRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL-EVGKWVESFIEKQMVNRSV 147
           R+GL  + ++ FR+M   G+ P    + ++++AC   G++   G  V  F+ K  +   V
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE----- 202
            +  A++ ++   G V  + K+F  M  R +VSWTS++ G +  G   E + +++     
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLG 269

Query: 203 -----EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257
                +++++G+         L+S     G VD     FD M     I      +  +  
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI-----SWNSIAA 324

Query: 258 MLCRSGRVKEA---HEFIQKMPIEANPIIWRTLIS 289
              ++G ++E+      +++   E N     TL+S
Sbjct: 325 AYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 359


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 293/491 (59%), Gaps = 35/491 (7%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---------------- 59
           +L+AC    D       H  ++KF +G    +  +LV  Y  C+                
Sbjct: 65  ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWG 124

Query: 60  ----------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
                           G  +  ++VF +M  RD V+W++MIGG  R     +A+  FR+M
Sbjct: 125 FDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREM 184

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
             S V PD  T  +V++ C  LG+    + V   + ++ +  +  L +ALID+++KCG +
Sbjct: 185 LNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 244

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A K+F S+    +  W S+I GLA+HG  L+A+ +F +M    V PD + F+G+L+AC
Sbjct: 245 NTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTAC 304

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           SHCGLV++GR YFD M+  + I P++EHYG MVD+L R+G V+EA+  I+ MP+E + +I
Sbjct: 305 SHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVI 364

Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
           WR L+SAC      +L E    ++     ++  +Y+LLS++Y  L +W+   ++RE+M +
Sbjct: 365 WRALLSACRNFKNPELGEVAIAKI---SHLNSGDYILLSNMYCSLEKWDSAERVREMMKR 421

Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
            G++K  G + +EL   I++F  GD+SH ++  IY++L+ + R+ K  G++P T  VL+D
Sbjct: 422 DGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMD 481

Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
           +++E++E+ LN HSEKLA+A+ +LKT PGT IR+ KNLR C+DCH   K +S++ +R I+
Sbjct: 482 VSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVII 541

Query: 464 VRDRHRFHHFK 474
           VRDR RFH F+
Sbjct: 542 VRDRIRFHQFE 552



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P+ FT+  V+  CA +G  +  + VHG +++ +   +  + + L+ +Y  C G
Sbjct: 184 MLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKC-G 242

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I   +KVF+ +   D   W++MI G A  GL+ DAI +F QM++  V PD IT + +L+
Sbjct: 243 RINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILT 302

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G +E G+     + +   +   +    A++D+  + G V++A  + ++M     I
Sbjct: 303 ACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDI 362

Query: 179 VSWTSVIAG 187
           V W ++++ 
Sbjct: 363 VIWRALLSA 371


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/471 (40%), Positives = 281/471 (59%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+ T   VLK+ A +   +  + VH   +K  F  D HV N L+  Y  C   +  
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC-LSD 457

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+E S  D ++ ++MI   ++      AI LF +M   G+ PD   + ++L+AC  
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A E GK V + + K+         NAL+  +AKCG ++ A   F S+  R +VSW+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA HG G  A+ LF  M++ G+ P+ +    +L AC+H GLVD+ + YF+SMK  FG
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I    EHY CM+D+L R+G++ +A E +  MP +AN  IW  L+ A     + +L +   
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAA 697

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           ++L   EP     +VLL++ YA    W +  K+R++M    +KK P  + IE+ ++++ F
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTF 757

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH  +KEIY  L E+G  M KAG+VP     L D++  +KE  L+ HSE+LA+AF
Sbjct: 758 IVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAF 817

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ALL TPPG PIR+ KNLR+C DCH A KFISKI +REI++RD +RFHHF+D
Sbjct: 818 ALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRD 868



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 7/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+F  P VLK    + D  LG  VH   +   FG D+ V N LV MYG   G
Sbjct: 94  MRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGF-G 149

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R+VF+E  SER++VSW+ ++  Y +     DAI +F +M  SG+ P E     V+
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    +E G+ V + + +   ++ V   NAL+DM+ K G VD A  +F  M    +V
Sbjct: 210 NACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVV 269

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G  ++G    A+ L  +M  +G+ P+      +L ACS  G  D GR+    M
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                        G +VDM  ++  + +A +    M    + I+   LIS C   G    
Sbjct: 330 IKANADSDDYIGVG-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDE 387

Query: 300 AESITKRL 307
           A S+   L
Sbjct: 388 ALSLFYEL 395



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 203/465 (43%), Gaps = 52/465 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P +F +  V+ AC G  ++  G+ VH  V++  +  D+   N LV MY    G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F++M + D VSW+A+I G    G    AI+L  QM+ SG+ P+  T+ ++L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  GA ++G+ +  F+ K   +    +   L+DM+AK   +D A K+F  M  R ++ 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----- 235
             ++I+G +  GR  EA++LF E+ + G+  +      +L + +        R+      
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 236 -----FDSMKNDFGIIPKIEHYGCMVD-------------MLCRS------------GRV 265
                FD+   + G+I       C+ D             + C S            G +
Sbjct: 432 KIGFIFDAHVVN-GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHI 324
           K   E ++K  +E +P +  +L++AC +    +  + +   LI  + M ++     L + 
Sbjct: 491 KLFMEMLRK-GLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT 549

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEM 384
           YAK    E        + +RG+  +  S +I           G   H   K   E+   M
Sbjct: 550 YAKCGSIEDAELAFSSLPERGV--VSWSAMIG----------GLAQHGHGKRALELFGRM 597

Query: 385 GRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKT 429
             +     ++  TS VL   N     D   ++   +   F + +T
Sbjct: 598 VDEGINPNHITMTS-VLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ F    +L ACA +     GK VH  ++K QF  D    N LV+ Y  C G
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-G 554

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  + ER  VSWSAMIGG A+ G    A++LF +M   G+ P+ ITM +VL 
Sbjct: 555 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G + E  ++  S  E   ++R+    + +ID+  + G +D A++L  SM  +   
Sbjct: 615 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 674

Query: 180 S-WTSVIAGLAMH 191
           S W +++    +H
Sbjct: 675 SIWGALLGASRVH 687



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 9/268 (3%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G  +H ++LK   G     +N L+  Y  C       R+VFDE+ +   VSWS+++  Y+
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPC-CARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             GL   AI  F  M+  GVC +E  +  VL    D     +G  V +          V 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGFGSDVF 136

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           + NAL+ M+   G +D A ++F   +  R  VSW  +++    + +  +A+ +F EM+ +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P +  F  +++AC+    ++ GR+   +M    G    +     +VDM  + GRV  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A    +KMP +++ + W  LIS C   G
Sbjct: 256 ASVIFEKMP-DSDVVSWNALISGCVLNG 282


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/502 (38%), Positives = 293/502 (58%), Gaps = 33/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+ F    +  A A +  L LGK +HG  +   +  D  V+++L+ MY  C G  + 
Sbjct: 100 ALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKC-GVPDD 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVC----- 109
            RKVFD +  ++SV W+A+I GY   G S +A++LFR M           ISG       
Sbjct: 159 ARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGES 218

Query: 110 -----------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D   + + +    DL A  +G+ + S   +   + S+ + NA
Sbjct: 219 VSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNA 278

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           ++DM++KC D+  A ++F  + GR I+SWT+++ G A HGR  EA +L++ M+ AGV P+
Sbjct: 279 VVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPN 338

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGL+ ACSH GLV KGR+ FDSMK ++GI P+++HY C +D+L RSG + EA E I
Sbjct: 339 EVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELI 398

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP   +   W +L+SAC      +++  +   L+   P + S YVLLS++YA   +W+
Sbjct: 399 TTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWD 458

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
               +R++M    ++K PG + IE+  E   F  G+      +EI   L+E+  +M++ G
Sbjct: 459 SVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSEMRQRG 518

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS V+ D+ E +KE  L  HSE+LA+AF +L++P G+ IR+VKNLRVCNDCH+  K
Sbjct: 519 YVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCNDCHTVMK 578

Query: 453 FISKIYNREIVVRDRHRFHHFK 474
           FIS+I+ R+I+VRD  RFHHF+
Sbjct: 579 FISEIFQRKIIVRDASRFHHFE 600



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 130/301 (43%), Gaps = 50/301 (16%)

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTD 124
           R +FDE   RD   +S+++   +        + L R+M     + PD   + ++ SA   
Sbjct: 58  RLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATAR 117

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC------------------------ 160
           L +L +GK +         +    + ++LIDM+ KC                        
Sbjct: 118 LRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTAL 177

Query: 161 -------GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
                  G  D+AL+LFRSM GRT+ +WT++I+G    G  + AV LF +M   GV  DD
Sbjct: 178 ISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDD 237

Query: 214 VAFVGLLSACSHCGLVD-----KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            AFV L SA    G  D      GR+   S+    G    +     +VDM  +   +  A
Sbjct: 238 -AFV-LSSAIG--GAADLAAHVLGRQ-LHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSA 292

Query: 269 HEFIQKMPIEANPII-WRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIY 325
            E  ++  I    II W T++      G  + A S+  R++  G +P +E  +V L  IY
Sbjct: 293 REVFEE--ITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKP-NEVTFVGL--IY 347

Query: 326 A 326
           A
Sbjct: 348 A 348


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 296/491 (60%), Gaps = 17/491 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+ +G   +  T+   L   + +  + +G+ +HG VL F    D +++++LV MYG C G
Sbjct: 257 MVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKC-G 315

Query: 61  GIELGRKVFDEMS----------------ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104
            ++    +  ++                 +   VSWS+M+ GY   G   D +  FR M 
Sbjct: 316 RMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMV 375

Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
              +  D  T+ T++SAC + G LE GK + ++I+K  +     + ++LIDM++K G +D
Sbjct: 376 CELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLD 435

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
            AL +F  +    +V WTS+I+G A+HG+G EA++LFE ML  G+ P++V FVG+L+ACS
Sbjct: 436 DALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACS 495

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
           H GL+++G  YF  MK+ + I P++EHY  MV++  R+G + EA  FI +  I     +W
Sbjct: 496 HVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVW 555

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           R+ +S+C       + +S+++ L+ + P     Y+LLS++ +   +W++   +R +M +R
Sbjct: 556 RSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQR 615

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+KK PG + ++L ++I+ F  GD+SH Q KEIY  LD +  ++K+ GY      V+ D+
Sbjct: 616 GVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDV 675

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
            EE  E  ++ HSEKLA+ F+++ T P TPIRI+KNLR+CNDCH+  K+ S++  REI+V
Sbjct: 676 EEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIV 735

Query: 465 RDRHRFHHFKD 475
           RD HRFHHFK 
Sbjct: 736 RDTHRFHHFKQ 746



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 165/353 (46%), Gaps = 54/353 (15%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN++T   VLK C+   ++  GK +H  +L+   G D+ ++N+++ +Y  C+   E 
Sbjct: 129 GACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKE-FEY 187

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ---------------------- 102
               F+ M E+D VSW+ MIG Y R G    ++++FR                       
Sbjct: 188 AESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYE 247

Query: 103 ---------MQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
                    M   G     +T    L   + L  +EVG+ +   +    +N    + ++L
Sbjct: 248 RLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSL 307

Query: 154 IDMFAKCGDVDKA--------LKLFRSMN-GRT-------IVSWTSVIAGLAMHGRGLEA 197
           ++M+ KCG +DKA        L   R  N G T       +VSW+S+++G   +G+  + 
Sbjct: 308 VEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDG 367

Query: 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY--GCM 255
           +  F  M+   +  D      ++SAC++ G+++ G++    ++    I  +I+ Y    +
Sbjct: 368 MKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQK---IGLRIDAYVGSSL 424

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
           +DM  +SG + +A    +++  E N ++W ++IS C   G+ K A S+ + ++
Sbjct: 425 IDMYSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQGKEAISLFEGML 476



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 34/293 (11%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD 76
           L +   IG     +++HG   K      ++  N L+ +Y      ++   K+FDE++ ++
Sbjct: 39  LHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVK-SSNLDHAHKLFDEITHKN 97

Query: 77  SVSWSAMIGGYARLGLSTDAI-DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + +W+ +I G+AR   S++ +  LFR+MQ  G CP++ T+ +VL  C+    ++ GK + 
Sbjct: 98  TQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIH 157

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKC-------------------------------GDVD 164
           ++I +  V   V L N+++D++ KC                               GDV+
Sbjct: 158 AWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVE 217

Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224
           K+L++FR+   + +VSW ++I GL   G    A+     M+  G     V F   L   S
Sbjct: 218 KSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVS 277

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
              LV+ GR+    +   FG+         +V+M  + GR+ +A   ++ +P+
Sbjct: 278 SLSLVEVGRQLHGRVLT-FGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL 329



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV-ALFEEMLEAGV 209
           N L+ ++ K  ++D A KLF  +  +   +WT +I+G A      E V +LF EM   G 
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGA 130

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
            P+      +L  CS    +  G+  +   ++N  G    +E+   ++D+  +    + A
Sbjct: 131 CPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLEN--SILDLYLKCKEFEYA 188

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELK 298
             F + M IE + + W  +I A    G+++
Sbjct: 189 ESFFELM-IEKDVVSWNIMIGAYLREGDVE 217


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 285/476 (59%), Gaps = 16/476 (3%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  +  F LKA A   D      +H  + +     D+ +  TL+  Y  C G +   RKV
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKC-GDVASARKV 177

Query: 69  FDEMSERDSVSWSAMIGGYAR-------LGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           FDEM  RD  +W+A++ G A+       L L       FR++      P+ +T+V  LSA
Sbjct: 178 FDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPREE-PNAVTVVAALSA 236

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRTIV 179
           C  LG L+ G  V  F        +V + NALIDM++KCG + +AL++F S  +  RT+V
Sbjct: 237 CAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLV 296

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I  L++HG G +A+ LF+EM  A + PD++ ++ ++  C+H GLVD GR  FDSM
Sbjct: 297 SYNATIQALSIHGHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSM 355

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ I  MP  A+ ++W+TL+ A    G + L
Sbjct: 356 R----VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDL 411

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    +KK+PG +  E+D 
Sbjct: 412 AELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDG 471

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  LDE+G ++   GY P TS VL DI EE+K+ AL+ HSEK
Sbjct: 472 VMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEK 531

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  IR++KNLR C DCH   K ISK YNR I++RDR RFH F+D
Sbjct: 532 LAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFED 587



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T    L ACA +G L  G +VH         D++ V N L+ MY  C G +    +
Sbjct: 225 PNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKC-GSLSRALE 283

Query: 68  VFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF   ++ +R  VS++A I   +  G   DA+ LF +M  + + PDEIT + V+  C   
Sbjct: 284 VFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-ARIEPDEITYLAVMGGCNHA 342

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           G ++ G+ V    +   V  ++     ++D+  + G + +A  +  SM     IV W ++
Sbjct: 343 GLVDDGRRV---FDSMRVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTL 399

Query: 185 IAGLAMHG 192
           +    MHG
Sbjct: 400 LGAAKMHG 407


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/471 (40%), Positives = 281/471 (59%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+ T   VLK+ A +   +  + VH   +K  F  D HV N L+  Y  C   +  
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC-LSD 457

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+E S  D ++ ++MI   ++      AI LF +M   G+ PD   + ++L+AC  
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A E GK V + + K+         NAL+  +AKCG ++ A   F S+  R +VSW+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA HG G  A+ LF  M++ G+ P+ +    +L AC+H GLVD+ + YF+SMK  FG
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I    EHY CM+D+L R+G++ +A E +  MP +AN  IW  L+ A     + +L +   
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAA 697

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           ++L   EP     +VLL++ YA    W +  K+R++M    +KK P  + IE+ ++++ F
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTF 757

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH  +KEIY  L E+G  M KAG+VP     L D++  +KE  L+ HSE+LA+AF
Sbjct: 758 IVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAF 817

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ALL TPPG PIR+ KNLR+C DCH A KFISKI +REI++RD +RFHHF+D
Sbjct: 818 ALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRD 868



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 7/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+F  P VLK    + D  LG  VH   +   FG D+ V N LV MYG   G
Sbjct: 94  MRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGF-G 149

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R+VF+E  SER++VSW+ ++  Y +     DAI +F +M  SG+ P E     V+
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    +E G+ V + + +   ++ V   NAL+DM+ K G VD A  +F  M    +V
Sbjct: 210 NACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVV 269

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G  ++G    A+ L  +M  +G+ P+      +L ACS  G  D GR+    M
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                        G +VDM  ++  + +A +    M    + I+   LIS C   G    
Sbjct: 330 IKANADSDDYIGVG-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDE 387

Query: 300 AESITKRL 307
           A S+   L
Sbjct: 388 ALSLFYEL 395



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 203/465 (43%), Gaps = 52/465 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P +F +  V+ AC G  ++  G+ VH  V++  +  D+   N LV MY    G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F++M + D VSW+A+I G    G    AI+L  QM+ SG+ P+  T+ ++L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+  GA ++G+ +  F+ K   +    +   L+DM+AK   +D A K+F  M  R ++ 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----- 235
             ++I+G +  GR  EA++LF E+ + G+  +      +L + +        R+      
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 236 -----FDSMKNDFGIIPKIEHYGCMVD-------------MLCRS------------GRV 265
                FD+   + G+I       C+ D             + C S            G +
Sbjct: 432 KIGFIFDAHVVN-GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHI 324
           K   E ++K  +E +P +  +L++AC +    +  + +   LI  + M ++     L + 
Sbjct: 491 KLFMEMLRK-GLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT 549

Query: 325 YAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEM 384
           YAK    E        + +RG+  +  S +I           G   H   K   E+   M
Sbjct: 550 YAKCGSIEDAELAFSSLPERGV--VSWSAMIG----------GLAQHGHGKRALELFGRM 597

Query: 385 GRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKT 429
             +     ++  TS VL   N     D   ++   +   F + +T
Sbjct: 598 VDEGINPNHITMTS-VLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ F    +L ACA +     GK VH  ++K QF  D    N LV+ Y  C G
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-G 554

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  + ER  VSWSAMIGG A+ G    A++LF +M   G+ P+ ITM +VL 
Sbjct: 555 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G + E  ++  S  E   ++R+    + +ID+  + G +D A++L  SM  +   
Sbjct: 615 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 674

Query: 180 S-WTSVIAGLAMH 191
           S W +++    +H
Sbjct: 675 SIWGALLGASRVH 687



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 9/268 (3%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G  +H ++LK   G     +N L+  Y  C       R+ FDE+ +   VSWS+++  Y+
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPC-CARRFFDEIPDPCHVSWSSLVTAYS 79

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             GL   AI  F  M+  GVC +E  +  VL    D     +G  V +          V 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---ARLGAQVHAMAMATGFGSDVF 136

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           + NAL+ M+   G +D A ++F   +  R  VSW  +++    + +  +A+ +F EM+ +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P +  F  +++AC+    ++ GR+   +M    G    +     +VDM  + GRV  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A    +KMP +++ + W  LIS C   G
Sbjct: 256 ASVIFEKMP-DSDVVSWNALISGCVLNG 282


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/428 (43%), Positives = 274/428 (64%), Gaps = 2/428 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N ++  +G   G +   R+VFD++ E+D  +WSAMI  Y R G   +A++LF  MQ  GV
Sbjct: 268 NAMILGFGQ-NGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGV 326

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +  ++++VLS C  L +L+ G+ V + + K   +  V + + LI M+ KCGD+ KA +
Sbjct: 327 QSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQ 386

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F   + + IV W S+I G A HG   EA+ +F EM  +G+  D V FVG+LSACS+ G 
Sbjct: 387 IFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGK 446

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V +G E F+SMK+ + + PK EHY CMVD+L R+G V +A + IQKMP+EA+ IIW  L+
Sbjct: 447 VKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            AC     + LAE   K+L+  EP +   Y+LLS+IYA   RW    ++R  M  + + K
Sbjct: 507 GACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSK 566

Query: 349 IPGSTLIELDNEIYEFVCGDKSHH-QSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE 407
            PG + IE++  ++ F  G  + H +   I +ML+++   +++AGY P +S VL D++EE
Sbjct: 567 SPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEE 626

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           +K  +L  HSE+LA+AF LLK P G PIR++KNLRVC DCHSA K I+KI  REI++RD 
Sbjct: 627 EKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDA 686

Query: 468 HRFHHFKD 475
           +RFHHFKD
Sbjct: 687 NRFHHFKD 694



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N  +   VL  CA +  L+ G+ VH  ++K QF  D+ V + L+ MY  C G
Sbjct: 321 MQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKC-G 379

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R++FD  S +D V W+++I GYA+ GL  +A+ +F +M  SG+  D +T V VLS
Sbjct: 380 DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLS 439

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC+  G ++ G +  ES   K +V         ++D+  + G V+ A+ L + M
Sbjct: 440 ACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKM 493



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 49/244 (20%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G IE  R+VFDEM ++  VSW++M+ GY +     +A  LF +M      P+  T+    
Sbjct: 30  GQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PERNTV---- 79

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
                        W                 N LI  + K   V +A K F +M  R +V
Sbjct: 80  ------------SW-----------------NGLISGYVKNRMVSEARKAFDTMPERNVV 110

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT+++ G    G   EA  LF +M E  V    V++  +L        +D+ R  FD M
Sbjct: 111 SWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARGLFDIM 166

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                 +  +     M+   C+ GR+ EA E   +MP   N I W T+IS     G++ +
Sbjct: 167 P-----VKDVVARTNMISGYCQEGRLAEARELFDEMP-RRNVISWTTMISGYVQNGQVDV 220

Query: 300 AESI 303
           A  +
Sbjct: 221 ARKL 224



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)

Query: 56  GSC-EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C EG +   R++FDEM  R+ +SW+ MI GY + G    A  LF  M       +E++
Sbjct: 180 GYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVS 235

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
              +L   T  G +E      S +   M  ++V  CNA+I  F + G+V KA ++F  + 
Sbjct: 236 WTAMLMGYTQGGRIEEA----SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIR 291

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            +   +W+++I      G  +EA+ LF  M   GV  +  + + +LS C+    +D GR+
Sbjct: 292 EKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQ 351

Query: 235 -YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
            + + +K+ F     +     ++ M  + G + +A +   +   + + ++W ++I+    
Sbjct: 352 VHAELVKSQFD--SDVFVASVLITMYVKCGDLVKARQIFDRFSPK-DIVMWNSIITGYAQ 408

Query: 294 RG 295
            G
Sbjct: 409 HG 410



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 137/312 (43%), Gaps = 39/312 (12%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-------------- 110
            RK FD M ER+ VSW+AM+ GY + GL ++A  LF QM    V                
Sbjct: 97  ARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRI 156

Query: 111 DE------ITMVTVLSACTDL--GALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCG 161
           DE      I  V  + A T++  G  + G+  E+  +  +M  R+V     +I  + + G
Sbjct: 157 DEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNG 216

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            VD A KLF  M  +  VSWT+++ G    GR  EA  LF+ M    V    VA   ++ 
Sbjct: 217 QVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV----VACNAMIL 272

Query: 222 ACSHCGLVDKGREYFDSMK-NDFGIIPKIEHYGCMVDMLCRSGRVKEA---HEFIQKMPI 277
                G V K R+ FD ++  D G       +  M+ +  R G   EA      +Q+  +
Sbjct: 273 GFGQNGEVAKARQVFDQIREKDDGT------WSAMIKVYERKGFEVEALNLFALMQREGV 326

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI 337
           ++N     +++S C +   L     +   L+ ++   +S+  + S +    ++     K 
Sbjct: 327 QSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ--FDSDVFVASVLITMYVKCGDLVKA 384

Query: 338 REVMDKRGMKKI 349
           R++ D+   K I
Sbjct: 385 RQIFDRFSPKDI 396


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 284/440 (64%), Gaps = 3/440 (0%)

Query: 37  LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96
           +K  F   + +    V MY    G ++   KVF+ +  +D +SW+ +I GYA+ GL+++A
Sbjct: 212 IKMNFVTVVSILPVFVDMYAKL-GLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 97  IDLFRQMQ-ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           I++++ M+    + P++ T V++L A   +GAL+ G  +   + K  ++  V +   LID
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
           ++ KCG +  A+ LF  +   + V+W ++I+   +HG   + + LF EML+ GV PD V 
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
           FV LLSACSH G V++G+  F  M+ ++GI P ++HYGCMVD+L R+G ++ A++FI+ M
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 449

Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
           P++ +  IW  L+ AC   G ++L +  + RL   +  +   YVLLS+IYA + +WE   
Sbjct: 450 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 509

Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
           K+R +  +RG+KK PG + IE++ ++  F  G++SH + KEIYE L  +  KMK  GY+P
Sbjct: 510 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 569

Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
             S VL D+ E++KE  L  HSE+LAIAF ++ TPP +PIRI KNLRVC DCH+ATKFIS
Sbjct: 570 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 629

Query: 456 KIYNREIVVRDRHRFHHFKD 475
           +I  REIVVRD +RFHHFKD
Sbjct: 630 RITQREIVVRDSNRFHHFKD 649



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 156/325 (48%), Gaps = 50/325 (15%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+ +T+P VLKAC  + D   G+ +H    K  F  ++ V  +L+HMY S  G   + 
Sbjct: 114 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMY-SRFGFTGIA 169

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FD+M  RD  SW+AMI G  + G +  A+D+  +M++ G+  + +T+V++L      
Sbjct: 170 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP----- 224

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
                                       +DM+AK G +D A K+F  +  + ++SW ++I
Sbjct: 225 --------------------------VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI 258

Query: 186 AGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            G A +G   EA+ +++ M E   + P+   +V +L A +H G + +G      MK    
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG------MKIHGR 312

Query: 245 IIPKIEHY-----GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +I    H       C++D+  + GR+ +A     ++P E++ + W  +IS     G  + 
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGHAEK 371

Query: 300 AESITKRLI--GNEPMHESNYVLLS 322
              +   ++  G +P H +   LLS
Sbjct: 372 TLKLFGEMLDEGVKPDHVTFVSLLS 396



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 24/276 (8%)

Query: 45  IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ-M 103
           I +   LV++Y +  G + L R  FD++ ++D  +W++MI  Y   G   +AI  F Q +
Sbjct: 51  IFISTRLVNLYANL-GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 109

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
            +S + PD  T   VL AC   G L  G+ +  +  K     +V +  +LI M+++ G  
Sbjct: 110 LVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 166

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A  LF  M  R + SW ++I+GL  +G   +A+ + +EM   G+  + V  V +L   
Sbjct: 167 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVF 226

Query: 224 ----SHCGLVDKGREYFDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
               +  GL+D   + F+       IIP   +  +  ++    ++G   EA E + KM  
Sbjct: 227 VDMYAKLGLLDSAHKVFE-------IIPVKDVISWNTLITGYAQNGLASEAIE-VYKMME 278

Query: 278 EANPII-----WRTLISACCARGELKLAESITKRLI 308
           E   II     W +++ A    G L+    I  R+I
Sbjct: 279 ECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 314


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/427 (44%), Positives = 266/427 (62%), Gaps = 1/427 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ FT   VL ACA + DL  G+ V  A  K     ++ V    V +Y  C G ++ 
Sbjct: 172 GVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKC-GEMDK 230

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD+M  +D V+W AM+GGYA  G   +A++LF  MQ+ G+ PD  T+   LSACT 
Sbjct: 231 ARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTR 290

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           LGAL++G+ V   ++   V  +  L  ALIDM+AKCG   +A  +F+ M  R I+ W ++
Sbjct: 291 LGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAM 350

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GL M G    A AL  +M ++G+  +D  F+GLL +C+H GLV  GR YF +M   + 
Sbjct: 351 ILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYH 410

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+IEHYG MVD+L R+G ++EAH+ IQ MP+EAN ++W  L+  C       LAE + 
Sbjct: 411 IRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVL 470

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           K+LI  EP +  NYV+LS+IY+   RWE   K+R  M  +G++K+P S+ +ELD +++EF
Sbjct: 471 KQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKVHEF 530

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
             GDKSH  S +IY  LDE+G +MK  GY P+T  V+ DI  E+KE  L  HSEK+AIAF
Sbjct: 531 HVGDKSHPLSDQIYAKLDELGMEMKAMGYKPSTEVVMFDIENEEKEHTLVHHSEKIAIAF 590

Query: 425 ALLKTPP 431
           +LL T P
Sbjct: 591 SLLTTEP 597



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 5/303 (1%)

Query: 7   SPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +P+  T+PF +K+ + + D L  G  +H   LK     + HV  +L+++Y  C G +   
Sbjct: 71  NPSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARC-GRLHDA 129

Query: 66  RKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           +K FDEM +  S VSW+A+I  Y   G   +AI + R    SGV PD  T V VL+AC  
Sbjct: 130 QKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACAR 189

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  L  G+ V +  EK+ +  +V +  A +D++ KCG++DKA  +F  M  + +V+W ++
Sbjct: 190 VADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAM 249

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           + G A +G   EA+ LF  M   G+ PD     G LSAC+  G +D GR     ++ D  
Sbjct: 250 VGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWD-E 308

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           ++        ++DM  + G   EA    QKM    + I+W  +I      G  K+A ++ 
Sbjct: 309 VLGNPVLGTALIDMYAKCGSTGEAWMVFQKMR-NRDIIVWNAMILGLGMTGHEKIAFALV 367

Query: 305 KRL 307
            ++
Sbjct: 368 GQM 370


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 300/479 (62%), Gaps = 6/479 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+  G++PNK T+  +L A + +  L LGK VH  VLK    +D  V N L+  Y    G
Sbjct: 569  MMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAK-SG 627

Query: 61   GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             ++   ++F  MS  RD+VSW++MI GY   G   + +D    M  S    D  T   VL
Sbjct: 628  DMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVL 687

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            +AC  + ALE G  + +F  +  +   V + +AL+DM++KCG +D A K+F SM+ +   
Sbjct: 688  NACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEF 747

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
            SW S+I+G A HG G +A+ +FEEM   G  PD V FV +LSACSH GLVD+G +YF+ M
Sbjct: 748  SWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMM 807

Query: 240  KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE--- 296
            + D GI+P IEHY C++D+L R+G++ +  E+I +MP++ N +IWRT++ AC    +   
Sbjct: 808  E-DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDR 866

Query: 297  LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
            + L +  ++ L+  EP +  NYVL S+ YA   RWE   K R  M    MKK  G + + 
Sbjct: 867  IDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVT 926

Query: 357  LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
            L + ++ F+ GD+SH  +KEIYE L+ + +K+K AGYVP T   L D+ EE+KE+ L+ H
Sbjct: 927  LGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYH 986

Query: 417  SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            SEKLA+AF L ++    PIRI+KNLRVC DCH+A ++IS+I  R+I++RD  RFHHF+D
Sbjct: 987  SEKLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFED 1045



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +SP+ F     L +CA +  L  G+ VH   +K+    D  V N LV MYG C G     
Sbjct: 472 ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDC-GARSES 530

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLST-DAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            ++F+ M+E D VSW++++G        T +++++F  M  SG+ P+++T V +LSA + 
Sbjct: 531 WEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSP 590

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTS 183
           L  LE+GK V + + K        + NAL+  +AK GD+D   +LF SM+GR   VSW S
Sbjct: 591 LSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNS 650

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+G   +G   E +     M+ +    D   F  +L+AC+    +++G E      + F
Sbjct: 651 MISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEM-----HAF 705

Query: 244 GIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           GI  ++E        ++DM  + GR+  A +    M  + N   W ++IS     G
Sbjct: 706 GIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS-QKNEFSWNSMISGYARHG 760



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 9   NKFTYPFVLKACAGIG----DLNLGKSVHGAVLKFQFGD-DIHVQNTLVHMYGSCEGGIE 63
           N  T+  +L A A        L  G+ VHG +L+    D  I + N LV+MY  C G I+
Sbjct: 369 NTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKC-GAID 427

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
              +VF  +  RD VSW+ +I    + G    A+  +  M+   + P     ++ LS+C 
Sbjct: 428 KASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCA 487

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  L  G+ V     K  ++    + NAL+ M+  CG   ++ ++F SM    IVSW S
Sbjct: 488 SLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNS 547

Query: 184 VIAGL-AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++  + + H    E+V +F  M+ +G+ P+ V FV LLSA S   +++ G++   ++   
Sbjct: 548 IMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQ-VHAVVLK 606

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
            G I        ++    +SG +    +    M    + + W ++IS     G L+
Sbjct: 607 HGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 16/295 (5%)

Query: 8   PNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL- 64
           P  FT+  VL+AC  AG   L     VHG V K  +  +  V N L+ MYG+C  G+ L 
Sbjct: 158 PTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQ 217

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM----QISGVCPDEITMVTVLS 120
            ++VFD    RD ++W+A++  YA+ G       LF  M        + P+E T  ++++
Sbjct: 218 AQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLIT 277

Query: 121 ACTDLGALEVGKWVESF--IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           A T L +   G   + F  + K   +  + + +AL+  FA+ G +D+A  +F ++  R  
Sbjct: 278 A-TSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNA 336

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD----KGRE 234
           V+   +I GL       EAV +F    ++ V   D  FV LLSA +   + +    +GRE
Sbjct: 337 VTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDT-FVVLLSAVAEFSIPEDGLMRGRE 395

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
               +     I  KI     +V+M  + G + +A   + ++    + + W T+IS
Sbjct: 396 VHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASR-VFRLLCARDRVSWNTIIS 449



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  ++K     D+ + N LV++Y      +   R+VFD M ER++VSW+ ++ GY   G
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAK-GSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 92  LSTDAIDLFRQMQISG---VCPDEITMVTVLSACTDLGA--LEVGKWVESFIEKQMVNRS 146
           ++ +A  +F+ M   G     P   T  +VL AC D G   L     V   + K +   +
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASN 196

Query: 147 VGLCNALIDMFAKC--GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
             +CNALI M+  C  G   +A ++F +   R +++W ++++  A  G  +    LF  M
Sbjct: 197 TTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAM 256

Query: 205 LEAG----VPPDDVAFVGLLSACS 224
           L       + P++  F  L++A S
Sbjct: 257 LHDDSAIELRPNEHTFGSLITATS 280


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 294/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML+    PN FT+  +LKA     D  +G+ +H   +K  + +D++V + L+ MY  C G
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARC-G 201

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   VFD++  ++ VSW+A+I G+AR G    A+  F +M  +G      T  +V S
Sbjct: 202 MMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFS 261

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +   LGALE GKWV + + K     +    N L+DM+AK G +  A K+F  ++ + +V+
Sbjct: 262 SIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVT 321

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++   A +G G EAV+ FEEM ++G+  + V F+ +L+ACSH GLV +G+ YF+ MK
Sbjct: 322 WNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            ++ + P+I+H+  +V +L R+G +  A  FI KMPIE    +W  L++AC      K+ 
Sbjct: 382 -EYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVG 440

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +     +   +P      VLL +IYA   +W+   ++R +M   G+KK P  + +E++N 
Sbjct: 441 QFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENS 500

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D +H +++EIY+M  ++ +K++K GYVP    VLL ++++++E  L  HSEKL
Sbjct: 501 VHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKL 560

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL++ P G  IRI+KN+R+C DCHSA K+ISK++ REIVVRD +RFHHF +
Sbjct: 561 ALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSN 615



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 3/297 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           ++P    Y   + ACA   +L   + VH  +   +F  D  + N+L+H+Y  C G +   
Sbjct: 47  LAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKC-GSVLEA 105

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RKVFDEM  +D VSW+++I GYA+  +  +AI L   M      P+  T  ++L A    
Sbjct: 106 RKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAH 165

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
               +G+ + +   K   +  V + +AL+DM+A+CG +D A  +F  ++ +  VSW ++I
Sbjct: 166 ADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALI 225

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
           +G A  G G  A+  F EML  G       +  + S+ +  G +++G+     M      
Sbjct: 226 SGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQK 285

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +        ++DM  +SG + +A +   ++  + + + W T+++A    G  K A S
Sbjct: 286 MTAFAG-NTLLDMYAKSGSMIDARKVFDRVD-DKDLVTWNTMLTAFAQYGLGKEAVS 340


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 285/476 (59%), Gaps = 16/476 (3%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  +  F LKA A   D      +H  + +     D+ +  TL+  Y  C G +   RKV
Sbjct: 153 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKC-GDVASARKV 211

Query: 69  FDEMSERDSVSWSAMIGGYAR-------LGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           FDEM  RD  +W+A++ G A+       L L       FR++      P+ +T+V  LSA
Sbjct: 212 FDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPREE-PNAVTVVAALSA 270

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--MNGRTIV 179
           C  LG L+ G  V  F        +V + NALIDM++KCG + +AL++F S  +  RT+V
Sbjct: 271 CAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLV 330

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           S+ + I  L++HG G +A+ LF+EM  A + PD++ ++ ++  C+H GLVD GR  FDSM
Sbjct: 331 SYNATIQALSIHGHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSM 389

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           +    + P ++HYG +VD+L R+GR+ EA++ I  MP  A+ ++W+TL+ A    G + L
Sbjct: 390 R----VPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDL 445

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE    +L       + +YVLLS++YA   RW    ++R+ M    +KK+PG +  E+D 
Sbjct: 446 AELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDG 505

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            +++F+ GDK H + +EIY  LDE+G ++   GY P TS VL DI EE+K+ AL+ HSEK
Sbjct: 506 VMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEK 565

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+ TPPG  IR++KNLR C DCH   K ISK YNR I++RDR RFH F+D
Sbjct: 566 LAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFED 621



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T    L ACA +G L  G +VH         D++ V N L+ MY  C G +    +
Sbjct: 259 PNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKC-GSLSRALE 317

Query: 68  VFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF   ++ +R  VS++A I   +  G   DA+ LF +M  + + PDEIT + V+  C   
Sbjct: 318 VFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-ARIEPDEITYLAVMGGCNHA 376

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           G ++ G+ V    +   V  ++     ++D+  + G + +A  +  SM     IV W ++
Sbjct: 377 GLVDDGRRV---FDSMRVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTL 433

Query: 185 IAGLAMHG 192
           +    MHG
Sbjct: 434 LGAAKMHG 441


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 274/436 (62%), Gaps = 6/436 (1%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D+   NT+V  YG C G +E  R+VF  M ER  VSWSAMI    R G  ++A+ +F QM
Sbjct: 148 DVVSWNTMVSGYGKC-GDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM 206

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG---LCNALIDMFAKC 160
             +G  PD + +V+VL  C  LGALE G+WV  F++ + +    G   L  AL+DM+ KC
Sbjct: 207 TGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKC 266

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           G +++A  +F  +    +V W ++I GLAM+G G  A+ LF  ML+ G  P++  FV  L
Sbjct: 267 GCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVAL 326

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            AC H G VD+G + F SM+ D GI P+ EHYGC+ D+L R+G ++EA   +  MP+E +
Sbjct: 327 CACIHTGRVDEGEDVFRSMR-DHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPH 385

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
              W  L+S+C     + + E + K+LI  EP     YV L ++YA    WE    +R++
Sbjct: 386 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKM 445

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M++RG KK  G + IE +  ++EF  GD  H Q++ IY +L++M ++++  GYV  TS+V
Sbjct: 446 MEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQV 505

Query: 401 LLDI-NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYN 459
           LLD+ NEEDK + L+ HSE+LA+AF +L  P   PIRIVKNLRVC DCH   K +SK+Y 
Sbjct: 506 LLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQ 565

Query: 460 REIVVRDRHRFHHFKD 475
           REI+VRDRHRFH F+D
Sbjct: 566 REIIVRDRHRFHLFRD 581



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG---DDIHVQNTLVHMYGS 57
           M   G  P+      VLK CA +G L  G+ VH  +   + G    ++ ++  LV MY  
Sbjct: 206 MTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCK 265

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           C G +     VFD +   D V W+AMIGG A  G    A++LFR+M   G  P+E T V 
Sbjct: 266 C-GCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVV 324

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            L AC   G ++ G+ V   +    +         L D+  + G +++A  +   M    
Sbjct: 325 ALCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEP 384

Query: 178 IVS-WTSVIAGLAMH 191
             S W ++++   MH
Sbjct: 385 HASQWGALMSSCLMH 399


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/474 (41%), Positives = 289/474 (60%), Gaps = 6/474 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+ N +T+  VL AC   G L    ++H  ++K     D+ V+++L+  Y    G
Sbjct: 165 MRRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKL-G 220

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++ GR VFDEM   D V W+++I G+A+ G    A++LF +M+ SG   ++ T+ +VL 
Sbjct: 221 DLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLR 280

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           ACT +  LEVG+ V + + K   +R + L NAL+DM+ KCG +  A  LF  M+ R ++S
Sbjct: 281 ACTGMVMLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVIS 338

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I+GLA +GR +EA+ +F+ M   G  P+++  VG+L ACSH GLV+ G  YF SM 
Sbjct: 339 WSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMD 398

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI P+ EH  CMVD+L R+G++ EA +FI +M  E + +IWRTL+ AC       LA
Sbjct: 399 KLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLA 458

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
                 ++  EP  +   +LLS+IYA L +W    K  + M  +G+KK PG + IEL   
Sbjct: 459 SYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKL 518

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ G+ SH  S  I + L+ + R+ K  GYVP T  VL D+  E KED L  HSEKL
Sbjct: 519 VHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKL 578

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AIAF  + +  G P+RI+KNLR+C DCH+  K +SK   + I++RD  RFHHF+
Sbjct: 579 AIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQ 632



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 83  MIGGYARLGLS---TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
           ++  ++RL L    T A+ L   +  +GV  D +++  ++  C   G +  G+ +   + 
Sbjct: 34  LVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVS 93

Query: 140 ------KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA-MHG 192
                     + S+ + N+L+ M+AK G +D AL+LF  M  R +VSWT+V+A LA   G
Sbjct: 94  LCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPG 153

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
           R  EA+    EM   GV  +   F  +L AC   G++     + D +K   G+   +   
Sbjct: 154 RKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVL--AAMHADIIK--VGLDSDVFVR 209

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             ++D   + G +        +M +  + ++W ++I+     G+
Sbjct: 210 SSLIDAYMKLGDLDSGRGVFDEM-VTCDLVVWNSIIAGFAQSGD 252


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 288/471 (61%), Gaps = 2/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  P+ F     L A AG   L  GKSVHG  ++      + V N L+ MY  C G +E 
Sbjct: 393 GTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKC-GNMEE 451

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD +  +D +SW+ +IGGY+R  L+ +A  LF +M +  + P+ +TM  +L A   
Sbjct: 452 AKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAAS 510

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +LE G+ + ++  ++       + NALIDM+ KCG +  A +LF  ++ + ++SWT +
Sbjct: 511 LSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIM 570

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           +AG  MHGRG +A+ALFE+M  +G+ PD  +F  +L ACSH GL D+G  +FD+M+ +  
Sbjct: 571 VAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHK 630

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I P+++HY CMVD+L  +G +KEA+EFI  MPIE +  IW +L+  C     +KLAE + 
Sbjct: 631 IEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVA 690

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           +R+   EP +   YVLL++IYA+  RWE   K++  +  RG+++  G + IE   +++ F
Sbjct: 691 ERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVF 750

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           +  +++H Q   I E L+E+ ++M++ G+ P     L+  +     +AL  HS KLA+AF
Sbjct: 751 IADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAF 810

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            +L    G  IR+ KN RVC+ CH A KFISK+ +REI++RD +RFHHF+ 
Sbjct: 811 GVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQ 861



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 5/285 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV P+ +T   VLK  AG+G +  G+ VHG + K  FG    V N L+  Y       + 
Sbjct: 191 GVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD- 249

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              VFD M  RD +SW++MI G    GL   AI+LF +M + G   D  T+++VL AC +
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAE 309

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  L +G+ V  +  K        L N L+DM++ C D     K+FR+M  + +VSWT++
Sbjct: 310 LHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAM 369

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDF 243
           I      G   +   LF+EM   G  PD  A    L A +   L+  G+     +++N  
Sbjct: 370 ITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN-- 427

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           G+   +     +++M  + G ++EA + I    +  + I W TLI
Sbjct: 428 GMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLI 471



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 4/275 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL ACA +  L LG+ VHG  +K  F     + N L+ MY +C        K+F  M ++
Sbjct: 303 VLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTN-KIFRNMVQK 361

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW+AMI  Y R GL      LF++M + G  PD   + + L A      L+ GK V 
Sbjct: 362 NVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVH 421

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            +  +  + + + + NAL++M+ KCG++++A  +F  +  + ++SW ++I G + +    
Sbjct: 422 GYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLAN 481

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           EA +LF EML   + P+ V    +L A +    +++GRE   +     G +        +
Sbjct: 482 EAFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGRE-MHAYALRRGYLEDDFVANAL 539

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
           +DM  + G +  A     ++    N I W  +++ 
Sbjct: 540 IDMYVKCGALLLARRLFDRLS-NKNLISWTIMVAG 573



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH---VQNTLVHMYGSCEGGIELGRKV 68
           +Y  VL+ C+ +  L  GK  H  V     G D     +   LV MY  C G +E  R+V
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKC-GDLENARRV 151

Query: 69  FDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           FDEM +   V  W+A++ GYA+ G   + + LFR+M   GV PD  T+  VL     LG+
Sbjct: 152 FDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGS 211

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           +E G+ V   +EK        + NAL+  +AK      A+ +F  M  R ++SW S+I+G
Sbjct: 212 IEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISG 271

Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGII 246
              +G   +A+ LF  M   G   D    + +L AC+   L+  GR     S+K   G I
Sbjct: 272 CTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKT--GFI 329

Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
            +      ++DM       +  ++  + M ++ N + W  +I++
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAMITS 372


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 293/475 (61%), Gaps = 14/475 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  +  F LKA A   D      +H  +L+     D+ +  TLV  Y  C G +   RKV
Sbjct: 117 DALSLSFALKASARCSDGTATLQLHALLLRLGCTPDVRLITTLVDSYAKC-GDLASARKV 175

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------GVCPDEITMVTVLSAC 122
           FDEM  RD  SW+A++ G A+    T A+ LF ++  S         P+E+T+V  LSAC
Sbjct: 176 FDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLVGSFRELPPREEPNEVTIVAALSAC 235

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVS 180
             +G+L+ G +V  F  K  VN +V +CNALIDM++KCG +D AL++F S+    RT+VS
Sbjct: 236 AQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMYSKCGSLDLALEVFHSIKREDRTLVS 295

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + + I  ++MHG G +A+ LF+EM    + PD+V ++ +L  C+H GLVD G   F SM+
Sbjct: 296 YNTAIQAVSMHGHGGDALRLFDEM-PTFIEPDEVTYIAVLCGCNHAGLVDDGLRVFHSMR 354

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               ++P ++HYG +VD+L R+GR+ EA++ I  MP  A+ ++W+TL+ A    G+++LA
Sbjct: 355 ----VLPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPADIVLWQTLLGAAKTHGDVELA 410

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+   
Sbjct: 411 ELAATKLDELGSNVDGDYVLLSNVYASKARWADVRRVRDTMRSNDVRKVPGFSYTEISGV 470

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F+ GDK H + +EIY  L+E+  ++ + GY P TS VL DI EE+K+ AL+ HSEKL
Sbjct: 471 MHKFINGDKEHPRWQEIYRALEEIVSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKL 530

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TPPG  +R++KNLR C DCH   K ISK Y R I++RDR RFH F+D
Sbjct: 531 AIAFGLIATPPGETLRVIKNLRTCGDCHVVAKLISKAYGRVIIIRDRARFHQFED 585



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 8/188 (4%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN+ T    L ACA IG L  G  VH    K     ++ V N L+ MY  C G ++L  +
Sbjct: 223 PNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMYSKC-GSLDLALE 281

Query: 68  VFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VF  +   D   VS++  I   +  G   DA+ LF +M  + + PDE+T + VL  C   
Sbjct: 282 VFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMP-TFIEPDEVTYIAVLCGCNHA 340

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSV 184
           G ++ G  V        V  +V    A++D+  + G + +A     SM     IV W ++
Sbjct: 341 GLVDDGLRV---FHSMRVLPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPADIVLWQTL 397

Query: 185 IAGLAMHG 192
           +     HG
Sbjct: 398 LGAAKTHG 405


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/503 (39%), Positives = 298/503 (59%), Gaps = 40/503 (7%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTL---------------- 51
           P+ FT+P +L +      L+L   +H  +LK  F    H Q+                  
Sbjct: 99  PDHFTFPQILPSAQ---PLHLVAQLHALLLKLGF--HAHTQSLNALLAAYLANARPDLAS 153

Query: 52  -----------VHMYGSCEGGI-ELG-----RKVFDEMSERDSVSWSAMIGGYARLGLST 94
                      V  + +  GG+ +LG     R +FD M ER+ VSW+AM+ GY +     
Sbjct: 154 RVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL 213

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           DA+++F +M+  GV  +     T + ACT  GAL  G+ V  ++E+  +     L  A++
Sbjct: 214 DALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVV 273

Query: 155 DMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           DM+ KCG V++A ++F ++    + + +W  +I G A+HGRG +A+ LF  M   GV PD
Sbjct: 274 DMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPD 333

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           DV  V +L+AC+H G++ +GR YF+ +   +GI PK+EHYGCMVD+  R+GR++EA + I
Sbjct: 334 DVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVI 393

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
           Q MP+E +  +   L  A    G++ L E+I  R+I  +P +   YVLL+++ A   RWE
Sbjct: 394 QDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWE 453

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              ++R +MD+R + K  G ++IE+  E+ EF CG   H +++E+Y M  +M R+++  G
Sbjct: 454 DVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEG 513

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP T +VL  I EE+KE  L  HSEKLAIAF LL T PG  +RI KNLRVC DCH ATK
Sbjct: 514 YVPDTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATK 573

Query: 453 FISKIYNREIVVRDRHRFHHFKD 475
           F+S+++ R+IVVRDR+RFHHFKD
Sbjct: 574 FVSRVFERQIVVRDRNRFHHFKD 596



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N F     + AC G G L  G+ VH  V +     D  +   +V MY  C G
Sbjct: 222 MRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKC-G 280

Query: 61  GIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            +E   +VF+   ++ +   +W+ MIGG+A  G   DA+ LF +M+  GV PD++T+V V
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNV 340

Query: 119 LSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           L+AC   G L  G+   +++ ++  +   +     ++D++ + G +++A K+ + M
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 286/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+   V PN+F+   VL+ACA I  L LG+ +H   +K  +  ++ V N L+ MY  C  
Sbjct: 341 MMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRN 400

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   ++F  + + + VSW+ +I GY + G + DA+ +F +M+ + +   ++T  +VL 
Sbjct: 401 -MENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLR 459

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC +  +++    + S IEK   N    +CN+LID +AKCG +  ALK+F S+    +VS
Sbjct: 460 ACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVS 519

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W S+I+  A+HGR   A+ LF+ M ++ +  +DV FV LLS C   GLV++G   F+SM 
Sbjct: 520 WNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMM 579

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P +EHY C+V +L R+GR+ +A +FI  +P   +P++WR L+S+C     + L 
Sbjct: 580 MDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALG 639

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               ++++  EP  E+ YVLLS++YA     ++    R+ M   G+KK  G + +E+  E
Sbjct: 640 RYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGE 699

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F  G   H   + I  ML+ +  K  + GYVP  + VL D++EE+K   L  HSE+L
Sbjct: 700 VHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERL 759

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L  TPPG PIRI+KNLR C DCH+  K ISKI  REI+VRD +RFHHF++
Sbjct: 760 ALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEE 814



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 151/307 (49%), Gaps = 11/307 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN F     LKA   +    LGK +HG  +K  +  + HV   L+ MY  C G IE 
Sbjct: 244 GFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKC-GDIED 302

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F+ +   D + WS +I  YA+   +  A ++F +M  S V P+E ++  VL AC +
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  LE+G+ + +   K      + + NAL+DM+AKC +++ +L++F S+     VSW ++
Sbjct: 363 IAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD----SMK 240
           I G    G   +A+++F EM  A +    V F  +L AC++   +    +       S  
Sbjct: 423 IVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTF 482

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N+  I+        ++D   + G +++A +  + + +E + + W ++ISA    G    A
Sbjct: 483 NNDTIVCN-----SLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHGRATNA 536

Query: 301 ESITKRL 307
             +  R+
Sbjct: 537 LELFDRM 543



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 141/299 (47%), Gaps = 3/299 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G   N F    +LK    +    L   +H    K     +  V   L+  Y  C G +  
Sbjct: 143 GHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLC-GAVCH 201

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R VFD +  +D+V+W+AM+  Y+   +   A++ F +M+++G  P+   + + L A   
Sbjct: 202 ARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVC 261

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +  +GK +     K + +    +  AL+DM+AKCGD++ A  +F  +    ++ W+ +
Sbjct: 262 LSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFL 321

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  A   +  +A  +F  M+ + V P++ +  G+L AC++   ++ G E   ++    G
Sbjct: 322 ISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELG-EQIHNLAIKLG 380

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
              ++     ++DM  +   ++ + E    +  +AN + W T+I   C  G  + A S+
Sbjct: 381 YESELFVGNALMDMYAKCRNMENSLEIFSSLQ-DANEVSWNTIIVGYCQSGFAEDALSV 438



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 13/279 (4%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGD----DIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
           L+ C   GD   G++VH  V+  Q G     D    N L++ Y    G +   R++FD M
Sbjct: 52  LQRCIARGDARAGRAVHARVV--QRGGVAQLDTFCANVLLNFYAKL-GPLATARRLFDGM 108

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            ER+ VS+  ++ GYA  G   +A++LFR++Q  G   +   + T+L     + A  +  
Sbjct: 109 PERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLAC 168

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            + +   K   +R+  +  ALID ++ CG V  A  +F  + G+  V+WT++++  + + 
Sbjct: 169 GIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEND 228

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSA--CSHCGLVDKGREYFDSMKNDFGIIPKIE 250
               A+  F +M   G  P+       L A  C    L+ KG  +  S+K  +   P + 
Sbjct: 229 IPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI-HGCSVKTLYDTEPHVG 287

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             G ++DM  + G +++AH   + +P + + I+W  LIS
Sbjct: 288 --GALLDMYAKCGDIEDAHAIFEMIPHD-DVILWSFLIS 323


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/458 (40%), Positives = 277/458 (60%), Gaps = 2/458 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ PN FT   +LKA      L+ G  +H   LK+ +   ++V + LV MY  C G
Sbjct: 180 MLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARC-G 238

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +  FD M  +  VSW+A+I G+AR G    A+ L  +MQ     P   T  +V S
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFS 298

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +GALE GKWV + + K  +     + N L+DM+AK G +D A ++F  +    +VS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +++ G A HG G E +  FE+ML  G+ P++++F+ +L+ACSH GL+D+G  YF+ MK
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             + + P + HY   VD+L R G +  A  FI++MPIE    +W  L+ AC     ++L 
Sbjct: 419 K-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELG 477

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               +R    +P      +LLS+IYA   RW    K+R++M + G+KK P  + +E++N 
Sbjct: 478 VYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENA 537

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV  D++H Q KEI    +E+  K+K+ GYVP TS VLL ++++++E+ L  HSEKL
Sbjct: 538 VHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKL 597

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIY 458
           A+AFALL TP G+PIRI KN+RVC DCH+A KF+SKIY
Sbjct: 598 ALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIY 635



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 156/290 (53%), Gaps = 6/290 (2%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGR 66
           P+   Y  +LK C  +G +  G+ VH  ++   F D+ + +QN +V+MY  C G ++  R
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC-GCLDDAR 143

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FDEM  +D V+W+A+I G+++     DA+ LF QM   G+ P+  T+ ++L A     
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEH 203

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L+ G  + +F  K     SV + +AL+DM+A+CG +D A   F  M  ++ VSW ++I+
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
           G A  G G  A+ L  +M      P    +  + SAC+  G +++G+     M K+   +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           I  I +   ++DM  ++G + +A     ++ ++ + + W T+++ C   G
Sbjct: 324 IAFIGN--TLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHG 370



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 91  GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES-FIEKQMVNRSVGL 149
           G    A+DL   +Q   + PD      +L  CT LG +E G+ V +  ++   ++  + L
Sbjct: 69  GTGLYALDL---IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVL 125

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            N +++M+AKCG +D A ++F  M  + +V+WT++IAG + + R  +A+ LF +ML  G+
Sbjct: 126 QNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL 185

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+      LL A      +D G +   +    +G    +     +VDM  R G +  A 
Sbjct: 186 QPNHFTLSSLLKASGSEHGLDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EPMHESNYVLLSHIYAK 327
                MP ++  + W  LIS    +GE + A  +  ++     +P H +   + S   A 
Sbjct: 245 LAFDGMPTKSE-VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSAC-AS 302

Query: 328 LLRWEKKTKIREVMDKRGMKKIP--GSTLIEL 357
           +   E+   +   M K G+K I   G+TL+++
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/475 (38%), Positives = 293/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G   ++FT   VL ACA    L+  + +H   +K     ++ V   L+ +Y  C G
Sbjct: 156 MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKC-G 214

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    VF+ M +R  V+WS+M  GY +  +   A+ LFR+   +G+  D+  M +V+ 
Sbjct: 215 LMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVIC 274

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L A+  GK V + + K     ++ + ++LIDM+AKCG ++++ K+FR +  R +V 
Sbjct: 275 ACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVL 334

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+GL+ H R LE + LFE+M + G+ P+DV FV +LSAC H GLV KG++YFD M 
Sbjct: 335 WNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMT 394

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  + P + HY CMVD L R+G++ EA++ I K+P  A+  +W +L+++C   G L+LA
Sbjct: 395 KEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELA 454

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L   EP +  NY+LLS++YA   +W++  K+R+++ +  +KK  G + IE+ ++
Sbjct: 455 EVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDK 514

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ G+++H +  EIY  L+E+  +++K GY   T   L  + E  K++ L  HSEKL
Sbjct: 515 VHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKL 574

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A    LL  PP  PIRI+KNLR+C DCHS  K  SK + R+++VRD +RFHHFK+
Sbjct: 575 AFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKN 629



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 148/274 (54%), Gaps = 3/274 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK CA    L  GK+ H  +L      D+   N L++MY  C G ++  R+VFDEM  R
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC-GSVDFARQVFDEMPSR 128

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
             VSW+ MIG   + G   +A+DL  QMQ  G    E T+ +VL AC    AL   + + 
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           +F  K  ++ +V +  AL+D++AKCG +  A+ +F SM  R++V+W+S+ AG   +    
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +A+ALF +  E G+  D      ++ AC+    + +G++  +++ +  G    I     +
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-VNALLSKSGFCSNIFVASSL 307

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +DM  + G ++E+++  + +  + N ++W  +IS
Sbjct: 308 IDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMIS 340


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 290/475 (61%), Gaps = 7/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PN +TY  VL+AC G+  LNL + +HG++LK     D+ V++ L+  Y    G
Sbjct: 108 MLREGVRPNMYTYSSVLRACDGL--LNL-RQLHGSILKVGLESDVFVRSALIDTYSKL-G 163

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
                  VF+EM   D V W+++IGG+A+     + + L+++M+ +    D+ T+ +VL 
Sbjct: 164 EQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLR 223

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTIV 179
           ACT L  LE+G+ V   + K   ++ + L NAL+DM+ KCG ++ A  LF R M  + ++
Sbjct: 224 ACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVI 281

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW+++IAGLA +G   +A+ LFE M   G  P+ +  +G+L ACSH GLV+ G  YF SM
Sbjct: 282 SWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSM 341

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K  FGI P  EHYGC++D+L R+G++ EA + I +M  E + + WR L+ AC     + L
Sbjct: 342 KEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDL 401

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           A    K ++  +P     Y+LLS+IYA   +WE   ++R  M  RG+KK PG + IE+  
Sbjct: 402 AIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSK 461

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ F+ GD SH + +EI   L ++ +++ + GYVP T+ VL D+  E  ED+L  HSEK
Sbjct: 462 QVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEK 521

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAI F L+  P    I I KNLR+C DCH   K +S++ NR IV+RD  R+HHF+
Sbjct: 522 LAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFR 576



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 156/321 (48%), Gaps = 19/321 (5%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           +S +  TY  ++K C   G +   + VH  V    +     + NTL++MY    G ++  
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKF-GLLDEA 70

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R +FDEM +R+ VSW+ MI  Y+   L+  A+D    M   GV P+  T  +VL AC  L
Sbjct: 71  RNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGL 130

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L   + +   I K  +   V + +ALID ++K G+   AL +F  M    +V W S+I
Sbjct: 131 LNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSII 187

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
            G A +  G E + L++ M  A    D      +L AC+   L++ GR+ +   +K D  
Sbjct: 188 GGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQD 247

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----ELKLA 300
           +I        ++DM C+ G +++A+    +M  E + I W T+I+     G     LKL 
Sbjct: 248 LILN----NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLF 303

Query: 301 ESITKRLIGNEPMHESNYVLL 321
           E++  +  G +P    NY+ +
Sbjct: 304 EAMKSK--GPKP----NYITI 318


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/448 (40%), Positives = 283/448 (63%), Gaps = 2/448 (0%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
             S+H  + K    +   + N L+ MY  C G +   RKVFD    +    W+++IGGY 
Sbjct: 3   ASSLHSLIFKCGCENKDPLDNLLLGMYAKC-GDLISARKVFDMALVKTVFLWTSIIGGYT 61

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
            +G   +A+ LF+++  + + P+  T+ T+LSAC DLG+L++GK +E +I          
Sbjct: 62  HMGYPAEALLLFKKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQ 121

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           +  +LI MF+KCG + KA+ +F  ++ + + +W+S+I G A+HG   EA+ LF +MLE  
Sbjct: 122 VQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIK 181

Query: 209 -VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
            + PD V F  +L ACSH GLV+ G ++F SM+ DFGI+P +EHY C+VD+L R+G+ + 
Sbjct: 182 EIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFEL 241

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A + I+ MP++    +W   +SAC     L+L E   ++L+   P   +NYVL++++Y  
Sbjct: 242 ALKTIRVMPVKLQAQVWAPFLSACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTS 301

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRK 387
           + +W++    R +M  RG+ K PG + +E++  ++ F+ GD+SH QS +IY+ L+E+  K
Sbjct: 302 MGKWKEAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLK 361

Query: 388 MKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDC 447
           + +AGYVP T  V+ D+  E+KE+AL  HSE+LAIAF L+ T  G+ +RI+KN R C DC
Sbjct: 362 LAEAGYVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDC 421

Query: 448 HSATKFISKIYNREIVVRDRHRFHHFKD 475
           HSA KFISKI  R ++VRD  RFHHF+ 
Sbjct: 422 HSALKFISKITGRHLIVRDGSRFHHFES 449



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + PN  T   +L ACA +G L++GK +   +L   F  D  VQ +L+HM+  C G I  
Sbjct: 80  AIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKC-GSIGK 138

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACT 123
              VF+ +S++D  +WS+MI GYA  G++ +A+ LF +M +I  + PD +   ++L AC+
Sbjct: 139 AISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACS 198

Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
            +G +E G K+ +S  +   +  SV     L+D+  + G  + ALK  R M
Sbjct: 199 HVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVM 249


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 280/471 (59%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+ T   VLK+ A +   +  + VH    K  F  D HV N L+  Y  C   +  
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC-LSD 457

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+E S  D ++ ++MI   ++      AI LF +M   G+ PD   + ++L+AC  
Sbjct: 458 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A E GK V + + K+         NAL+  +AKCG ++ A   F S+  R +VSW+++
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA HG G  A+ LF  M++ G+ P+ +    +L AC+H GLVD+ + YF+SMK  FG
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 637

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I    EHY CM+D+L R+G++ +A E +  MP +AN  +W  L+ A     + +L +   
Sbjct: 638 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAA 697

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           ++L   EP     +VLL++ YA    W +  K+R++M    +KK P  + +E+ ++++ F
Sbjct: 698 EKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTF 757

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH  +KEIY  LDE+G  M KAGY+P     L D++  +KE  L+ HSE+LA+AF
Sbjct: 758 IVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAF 817

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ALL TPPG PIR+ KNLR+C DCH A KFIS I +REI++RD +RFHHF+D
Sbjct: 818 ALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRD 868



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+F  P VLK    + D  LG  VH   +   FG D+ V N LV MYG   G
Sbjct: 94  MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGF-G 149

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R+VFDE  SER++VSW+ ++  Y +     DAI +F +M  SG+ P E     V+
Sbjct: 150 FMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    ++ G+ V + + +    + V   NAL+DM+ K G VD A  +F  M    +V
Sbjct: 210 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 269

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G  ++G    A+ L  +M  +G+ P+      +L AC+  G  D GR+    M
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 329

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                        G +VDM  ++  + +A +    M    + I+W  LIS C   G    
Sbjct: 330 IKANADSDDYIGVG-LVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGCSHGGRHDE 387

Query: 300 AESI 303
           A SI
Sbjct: 388 AFSI 391



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 200/464 (43%), Gaps = 50/464 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P +F +  V+ AC G  +++ G+ VH  V++  +  D+   N LV MY    G
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKM-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F++M + D VSW+A+I G    G    AI+L  QM+ SG+ P+   + ++L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA ++G+ +  F+ K   +    +   L+DM+AK   +D A+K+F  M+ R ++ 
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 371

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----- 235
           W ++I+G +  GR  EA ++F  + + G+  +      +L + +        R+      
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 431

Query: 236 -----FDSMKNDFGIIPKIEHYGCMVDML-----CRSGRVKEAHEFIQKMP--------- 276
                FD+   + G+I       C+ D +     C SG +      I  +          
Sbjct: 432 KIGFIFDAHVVN-GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 490

Query: 277 ----------IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHIY 325
                     +E +P +  +L++AC +    +  + +   LI  + M ++     L + Y
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 550

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           AK    E        + +RG+  +  S +I           G   H   K   E+   M 
Sbjct: 551 AKCGSIEDAELAFSSLPERGV--VSWSAMIG----------GLAQHGHGKRALELFGRMV 598

Query: 386 RKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKT 429
            +     ++  TS VL   N     D   ++   +   F + +T
Sbjct: 599 DEGINPNHITMTS-VLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ F    +L ACA +     GK VH  ++K QF  D    N LV+ Y  C G
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-G 554

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  + ER  VSWSAMIGG A+ G    A++LF +M   G+ P+ ITM +VL 
Sbjct: 555 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G + E  ++  S  E   ++R+    + +ID+  + G +D A++L  SM  +   
Sbjct: 615 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 674

Query: 180 S-WTSVIAGLAMH 191
           S W +++    +H
Sbjct: 675 SVWGALLGASRVH 687



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 9/268 (3%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
           G  +H  +LK  F   +  +N L+  Y  C       R+VFDE+ +   VSWS+++  Y+
Sbjct: 23  GAHLHANLLKSGFLASL--RNHLISFYSKCRRPC-CARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
             GL   AI  F  M+  GVC +E  +  VL    D    ++G  V +          V 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVF 136

Query: 149 LCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           + NAL+ M+   G +D A ++F  + + R  VSW  +++    + +  +A+ +F EM+ +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P +  F  +++AC+    +D GR+   +M    G    +     +VDM  + GRV  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 255

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
           A    +KMP +++ + W  LIS C   G
Sbjct: 256 ASVIFEKMP-DSDVVSWNALISGCVLNG 282


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/416 (42%), Positives = 265/416 (63%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +EL  ++F  M+ ++ V+W++MI GY     + D + +F+ M  S V P+ +++ +VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C++L AL +G+ +   + K  +++    C +LI M+ KCGD+D A KLF  M  + ++
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G A HG G +A+ LF++M    + PD + FV ++ AC+H G VD G +YF SM
Sbjct: 363 SWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K +FGI  K  HY C++D+L R+GR+ EA   I++MP + +  I+ TL+ AC     L L
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDL 482

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE   + L+  +P   + YV L++IYA   +W++  K+R++M +  + KIPG + IE+ +
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             +EF   D+ H +   I++ L+E+  KMK AGYVP     L D+ EE KE  L  HSEK
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEK 602

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+KT PGTPIR+ KNLRVC DCH A KFIS I  REI+VRD  RFHHF++
Sbjct: 603 LAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V PN  +   VL  C+ +  L LG+ +H  V K     D     +L+ MY  C G
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKC-G 344

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K+F EM  +D +SW+AMI GYA+ G    A+ LF +M+   + PD IT V V+ 
Sbjct: 345 DLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVIL 404

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC   G +++G ++ +S  ++  +         +ID+  + G +D+A+ L + M
Sbjct: 405 ACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 14/237 (5%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE--ITMVTV 118
           G+E     F++M  +D  SW+ +I G+A+ G    A DLF       V P++  ++   +
Sbjct: 151 GVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF------SVMPEKNGVSWSAM 204

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +S   + G LE  +     + K +  +SV +  A++  + K G V+ A ++F+ M  + +
Sbjct: 205 ISGYVEHGDLEAAE----ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W S+IAG   + R  + + +F+ M+E+ V P+ ++   +L  CS+   +  GR+    
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQ 319

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + +   +         ++ M C+ G +  A +   +MP   + I W  +IS     G
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMISGYAQHG 375



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 123/284 (43%), Gaps = 56/284 (19%)

Query: 42  GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLF 100
            D + +  T+     +C+  +E  R VF++MS R +V+W+ M+ GY ++ G   +A +LF
Sbjct: 71  SDVVSLNKTIASFVRACD--LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            ++      PD ++                                    N ++  + + 
Sbjct: 129 DKIPE----PDSVSY-----------------------------------NIMLVCYLRS 149

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
             V+ AL  F  M  + I SW ++I+G A +G+  +A  LF  M E     + V++  ++
Sbjct: 150 YGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMI 205

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           S     G ++   E + ++     ++      G M     + G+V+ A    Q+M ++ N
Sbjct: 206 SGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM-----KFGKVELAERIFQRMAVK-N 259

Query: 281 PIIWRTLISA----CCARGELKLAESITKRLIGNEPMHESNYVL 320
            + W ++I+     C A   LK+ +++ +  +   P+  S+ +L
Sbjct: 260 LVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 292/471 (61%), Gaps = 8/471 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P +FT+  VL+AC   G L  GK +HG V+K+ F +D  + + L+ +Y +  G +E 
Sbjct: 314 GMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN-SGCMED 372

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G + F    + D V+W+AM+ G  +  L   A+ LF +   +G+ PD  T+ +V++AC  
Sbjct: 373 GFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACAS 432

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ ++ F  K   +R   + N+ + M+A+ GDVD A + F+ M    +VSW++V
Sbjct: 433 LAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAV 492

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  A HG   +A+  F+EM++A V P+++ F+G+L+ACSH GLVD+G  Y+++M  D+G
Sbjct: 493 ISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYG 552

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P I+H  C+VD+L R+GR+ +A  FI      A+P+IWR+L+++C    +L+  + + 
Sbjct: 553 LSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVA 612

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            R++  EP   ++YV+L ++Y         +K R++M +RG+KK PG + IEL   ++ F
Sbjct: 613 NRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSF 672

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GDKSH +S  IY  L+EM  +++K     T +E+      + +++ +N HSEKLA+A 
Sbjct: 673 VAGDKSHPESSAIYTKLEEMLSRIEK--LATTDTEI-----SKREQNLMNCHSEKLAVAL 725

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            ++  P   PIR++KNLRVC DCHS  K ISK  NREI++RD  RFHHF+D
Sbjct: 726 GMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRD 776



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 29/304 (9%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  ++F+Y   L AC+  G L  G++VH   +       + V N+LV MY  C G +  
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKC-GEMGE 162

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD   ERD VSW++++ GY R G   + + +F  M+  G+  +   + +V+  C+ 
Sbjct: 163 ARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSG 222

Query: 125 L--GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
              G +++ + V   + K  ++  V L +A+IDM+AK G + +A  LFRS+    +V + 
Sbjct: 223 RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFN 282

Query: 183 SVIAGL----AMHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY- 235
           ++IAG      + G+ +  EA+ L+ E+   G+ P +  F  +L AC+  G ++ G++  
Sbjct: 283 TMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIH 342

Query: 236 -----FDSMKNDF---GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
                +   ++DF    +I    + GCM D   R  R    H+ +           W  +
Sbjct: 343 GQVIKYTFQEDDFIGSALIDLYFNSGCMEDGF-RCFRSSPKHDIVT----------WTAM 391

Query: 288 ISAC 291
           +S C
Sbjct: 392 VSGC 395



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 160/325 (49%), Gaps = 26/325 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           G+  N F    V+K C+G GD  +++ ++VHG V+K     D+ + + ++ MY   +G +
Sbjct: 205 GMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAK-KGAL 263

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYAR----LG--LSTDAIDLFRQMQISGVCPDEITMV 116
                +F  + E + V ++ MI G+ R    +G  ++++A+ L+ ++Q  G+ P E T  
Sbjct: 264 VEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFS 323

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +VL AC   G LE GK +   + K        + +ALID++   G ++   + FRS    
Sbjct: 324 SVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            IV+WT++++G   +    +A++LF E L AG+ PD      +++AC+   +   G +  
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQI- 442

Query: 237 DSMKNDFGIIPKIEHYGCM----VDMLCRSGRVKEAHEFIQKMPIEANPII-WRTLISA- 290
                 F      + +  M    V M  RSG V  A    Q+M  E++ ++ W  +IS  
Sbjct: 443 ----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM--ESHDVVSWSAVISCH 496

Query: 291 ---CCARGELK-LAESITKRLIGNE 311
               CAR  L    E +  +++ NE
Sbjct: 497 AQHGCARDALHFFDEMVDAKVVPNE 521



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 45  IHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           + ++NTL+  Y  C  GG    R++ DEM  R++VS++ +I  Y+R GL+  +++   + 
Sbjct: 43  LFLRNTLLAAY--CRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           + +GV  D  +    L+AC+  G L  G+ V +      ++  V + N+L+ M++KCG++
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            +A ++F     R  VSW S+++G    G   E V +F  M   G+  +  A   ++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 224 SHCGLVDKGREYFDSMKN---DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           S  G  D   +  +++       G+   +     M+DM  + G + EA    + +  E N
Sbjct: 221 S--GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-EPN 277

Query: 281 PIIWRTLISACC 292
            +++ T+I+  C
Sbjct: 278 VVMFNTMIAGFC 289


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/467 (38%), Positives = 286/467 (61%), Gaps = 2/467 (0%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +F +  +L   +   D  +G+ +H   +      +I V N+LV MY  C G  E    +F
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC-GKFEEAEMIF 409

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
             ++ R +V W+AMI  Y + G   + + LF +M+ + V  D+ T  ++L A   + +L 
Sbjct: 410 TNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLS 469

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           +GK + SFI K     +V   +AL+D++AKCG +  A++ F+ M  R IVSW ++I+  A
Sbjct: 470 LGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 529

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
            +G     +  F+EM+ +G+ PD V+F+G+LSACSH GLV++G  +F+SM   + + P+ 
Sbjct: 530 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 589

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EHY  +VDMLCRSGR  EA + + +MPI+ + I+W ++++AC      +LA     +L  
Sbjct: 590 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 649

Query: 310 NEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
            E + ++  YV +S+IYA   +WE  +K+ + M  RG+KK+P  + +E+ +E + F   D
Sbjct: 650 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSAND 709

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           + H Q +EI + +D + + M++ GY P TS  L + +E+ K ++L  HSE+LAIAFAL+ 
Sbjct: 710 RCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALIS 769

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           TP G+PI ++KNLR C DCH+A K ISKI  REI VRD  RFHHF+D
Sbjct: 770 TPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRD 816



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 3/296 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P +FT+  VL A  G+ D+ LG+ +H  V+K  F  ++ V N L+  Y   + 
Sbjct: 241 MQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDS 300

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  RK+FDEM E+D VS++ +I GYA  G    A DLFR++Q +     +    T+LS
Sbjct: 301 VID-ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS 359

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             ++    E+G+ + +       +  + + N+L+DM+AKCG  ++A  +F ++  R+ V 
Sbjct: 360 IASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP 419

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           WT++I+     G   E + LF +M +A V  D   F  LL A +    +  G++   S  
Sbjct: 420 WTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFI 478

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
              G +  +     ++D+  + G +K+A +  Q+MP + N + W  +ISA    GE
Sbjct: 479 IKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGE 533



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-IE 63
           G  P+  T+  +L  C G    N    V   ++K  +   + V NTLV  Y  C+   ++
Sbjct: 144 GTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSY--CKSNRLD 201

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           L  ++F EM E DSVS++AMI GY++ GL   A++LF +MQ SG+ P E T   VL A  
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  + +G+ + SF+ K     +V + NAL+D ++K   V  A KLF  M  +  VS+  
Sbjct: 262 GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNV 321

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS---MK 240
           +I+G A  G+   A  LF E+           F  +LS  S+    + GR+         
Sbjct: 322 IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT 381

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            D  I+        +VDM  + G+ +EA E I       + + W  +ISA   +G
Sbjct: 382 ADSEILVG----NSLVDMYAKCGKFEEA-EMIFTNLTHRSAVPWTAMISAYVQKG 431



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 150/304 (49%), Gaps = 11/304 (3%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RK+FD M ER +V+W+ +IGGY++L    +A +LF QMQ  G  PD +T VT+L
Sbjct: 97  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL 156

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S C           V++ I K   +  + + N L+D + K   +D A +LF+ M     V
Sbjct: 157 SGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSV 216

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--KGREYFD 237
           S+ ++I G +  G   +AV LF EM  +G+ P +  F  +L  C++ GL D   G++   
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHS 274

Query: 238 -SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
             +K +F  +  +     ++D   +   V +A +   +MP E + + +  +IS     G+
Sbjct: 275 FVIKTNF--VWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAWDGK 331

Query: 297 LKLAESITKRL-IGNEPMHESNYVLLSHIYAKLLRWEKKTKI--REVMDKRGMKKIPGST 353
            K A  + + L        +  +  +  I +  L WE   +I  + ++     + + G++
Sbjct: 332 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 391

Query: 354 LIEL 357
           L+++
Sbjct: 392 LVDM 395



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           ++M +++    N +I  + K G++ +A KLF  M  RT V+WT +I G +   +  EA  
Sbjct: 76  EKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFE 135

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF +M   G  PD V FV LLS C+   + ++  +   +     G   ++     +VD  
Sbjct: 136 LFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQ-VQTQIIKLGYDSRLIVGNTLVDSY 194

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           C+S R+  A +  ++MP E + + +  +I+     G
Sbjct: 195 CKSNRLDLACQLFKEMP-EIDSVSYNAMITGYSKDG 229


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 191/424 (45%), Positives = 275/424 (64%), Gaps = 7/424 (1%)

Query: 56  GSCEGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C  G +   R++F+EM  RD VSW+AM+ G A      +A+ LFR+M   G  P+  T
Sbjct: 115 GLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGT 174

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCGDVDKALKLFRS 172
           +++ L+AC   GALE GKW+ +F+E++ + R     L  AL+DM+AKCG V+ AL +F  
Sbjct: 175 VLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTK 234

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-LEAGVPPDDVAFVGLLSACSHCGLVDK 231
           +  R   +W ++I GLAM+G   +A+ +F +M L+  V PD+V FVG+L ACSH G VD 
Sbjct: 235 LRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDV 294

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           GRE+F  ++  +GI   +EHY CMVD+L RSG ++EAH+ I  MP++ + ++WR L+  C
Sbjct: 295 GREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGC 354

Query: 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
               ++K+AE+    +   E     ++VLLS++YA + RW     +R  M  +G++KIPG
Sbjct: 355 RLHKDVKMAETAISEM---EATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPG 411

Query: 352 STLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKED 411
            + IE+++ I+EFV GDKSH    +I+  L E+  +M++ GYV  T+EV  D+ EE+KE 
Sbjct: 412 CSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYDVEEEEKEQ 471

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
           AL  HSEKLAIAF L+  PP   IRIVKNLR C DCH   K +S+IY+ EIVVRDR RFH
Sbjct: 472 ALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIVVRDRARFH 531

Query: 472 HFKD 475
           HF +
Sbjct: 532 HFTE 535



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---FQFGDDIHVQNTLVHMYGS 57
           M+  G +PN+ T    L ACAG G L  GK +H  V +   F++ D+  +   L+ MY  
Sbjct: 163 MMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEF-LGTALLDMYAK 221

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMV 116
           C G +EL   VF ++  R++ +W+AMI G A  G S  A+D+FR+M++   V PDE+T V
Sbjct: 222 C-GAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFV 280

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA-LIDMFAKCGDVDKALKLFRSMNG 175
            VL AC+  G ++VG+     IEK+   R +    A ++D+ A+ G + +A K+   M  
Sbjct: 281 GVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPM 340

Query: 176 RT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           +   V W +++ G  +H     A     EM EA    D V    L +A      V+  R 
Sbjct: 341 KPDAVVWRALLGGCRLHKDVKMAETAISEM-EATCSGDHVLLSNLYAAVGRWSGVEDVRR 399

Query: 235 YFDS 238
              S
Sbjct: 400 TMRS 403



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 40/181 (22%)

Query: 32  VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91
           +H  ++K        V N L+  Y +  G ++  R+VFD MS RD+VS+++MI  +A  G
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAA-SGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSG 89

Query: 92  LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN 151
               A  LF ++      P  +T  ++++                           GLC 
Sbjct: 90  DVVSARRLFERVP----SPTPVTWTSMVA---------------------------GLCR 118

Query: 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
           A        GDV  A +LF  M  R +VSW ++++GLA + R +EA+ LF  M+  G  P
Sbjct: 119 A--------GDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAP 170

Query: 212 D 212
           +
Sbjct: 171 N 171


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/471 (39%), Positives = 280/471 (59%), Gaps = 1/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N+ T   VLK+ A +   +  + VH    K  F  D HV N L+  Y  C   +  
Sbjct: 306 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC-LSD 364

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VF+E S  D ++ ++MI   ++      AI LF +M   G+ PD   + ++L+AC  
Sbjct: 365 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 424

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L A E GK V + + K+         NAL+  +AKCG ++ A   F S+  R +VSW+++
Sbjct: 425 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 484

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I GLA HG G  A+ LF  M++ G+ P+ +    +L AC+H GLVD+ + YF+SMK  FG
Sbjct: 485 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFG 544

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           I    EHY CM+D+L R+G++ +A E +  MP +AN  +W  L+ A     + +L +   
Sbjct: 545 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAA 604

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
           ++L   EP     +VLL++ YA    W +  K+R++M    +KK P  + +E+ ++++ F
Sbjct: 605 EKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTF 664

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           + GDKSH  +KEIY  LDE+G  M KAGY+P     L D++  +KE  L+ HSE+LA+AF
Sbjct: 665 IVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAF 724

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           ALL TPPG PIR+ KNLR+C DCH A KFIS I +REI++RD +RFHHF+D
Sbjct: 725 ALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRD 775



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+F  P VLK    + D  LG  VH   +   FG D+ V N LV MYG   G
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGF-G 56

Query: 61  GIELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R+VFDE  SER++VSW+ ++  Y +     DAI +F +M  SG+ P E     V+
Sbjct: 57  FMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 116

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    ++ G+ V + + +    + V   NAL+DM+ K G VD A  +F  M    +V
Sbjct: 117 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 176

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I+G  ++G    A+ L  +M  +G+ P+      +L AC+  G  D GR+    M
Sbjct: 177 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 236

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                        G +VDM  ++  + +A +    M    + I+W  LIS C   G    
Sbjct: 237 IKANADSDDYIGVG-LVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGCSHGGRHDE 294

Query: 300 AESI 303
           A SI
Sbjct: 295 AFSI 298



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 36/350 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  G+ P +F +  V+ AC G  +++ G+ VH  V++  +  D+   N LV MY    G
Sbjct: 100 MVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKM-G 158

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +++   +F++M + D VSW+A+I G    G    AI+L  QM+ SG+ P+   + ++L 
Sbjct: 159 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 218

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA ++G+ +  F+ K   +    +   L+DM+AK   +D A+K+F  M+ R ++ 
Sbjct: 219 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 278

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY----- 235
           W ++I+G +  GR  EA ++F  + + G+  +      +L + +        R+      
Sbjct: 279 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 338

Query: 236 -----FDSMKNDFGIIPKIEHYGCMVDML-----CRSGRVKEAHEFIQKMP--------- 276
                FD+   + G+I       C+ D +     C SG +      I  +          
Sbjct: 339 KIGFIFDAHVVN-GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 397

Query: 277 ----------IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316
                     +E +P +  +L++AC +    +  + +   LI  + M ++
Sbjct: 398 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDA 447



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G+ P+ F    +L ACA +     GK VH  ++K QF  D    N LV+ Y  C G
Sbjct: 403 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-G 461

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE     F  + ER  VSWSAMIGG A+ G    A++LF +M   G+ P+ ITM +VL 
Sbjct: 462 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 521

Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC   G + E  ++  S  E   ++R+    + +ID+  + G +D A++L  SM  +   
Sbjct: 522 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 581

Query: 180 S-WTSVIAGLAMH 191
           S W +++    +H
Sbjct: 582 SVWGALLGASRVH 594


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 295/506 (58%), Gaps = 38/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  N  T   +L ACA    + LG+ VHG +L+ +   +++V + LV+MY S   G++ 
Sbjct: 173 GIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYAS-SLGLKQ 229

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--------------------- 103
            R VFD M  RD VSW+ M+  Y         + LF QM                     
Sbjct: 230 ARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQ 289

Query: 104 --------------QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                         Q SG+ P+ IT+V+ L  CT+L +L  GK +  ++ +      V +
Sbjct: 290 NGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTI 349

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+ ++AKCGD++ +  +F +M  + +V+W ++I   +MHG+G E++ LF +ML++GV
Sbjct: 350 TTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGV 409

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F+G+LS CSH  L D+G   F+SM ++  I P  +HY CMVD+L R+GR++EA+
Sbjct: 410 EPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAY 469

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           +FI+KMPIE     W  L+ AC     ++L      +L   EP +  NYVLLS+I     
Sbjct: 470 DFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAK 529

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
           +W + ++IR++M  +G+ K PG + +++ N++Y FV GDKS+ Q   IY  LDE+  KM+
Sbjct: 530 KWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMR 589

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
             GY P T  VL ++++E +E+ L  HSE+LA+AF +L +   T +R+ KNLR+C DCH+
Sbjct: 590 LDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHN 649

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K I+KI   +I+VRD  RFHHF+D
Sbjct: 650 AIKLIAKIVGMQIIVRDSLRFHHFRD 675



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   V P+KF    V KACA  GDL + K +H   ++F F  D+ + N L+ M+G C+ 
Sbjct: 68  LLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCK- 126

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFD+M  +D VSW++M   Y   G+    I LFR+M ++G+  + +T+ ++L 
Sbjct: 127 FVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILP 186

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC D   +++G+ V  FI +  +  +V + +AL++M+A    + +A  +F SM  R IVS
Sbjct: 187 ACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVS 244

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227
           W  ++    ++      + LF +M + G+  +  ++   +S C   G
Sbjct: 245 WNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNG 291



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 16/238 (6%)

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G ++    +FD++ E D  +W+ +I G+ + G    AID++  +    V PD+  +++V
Sbjct: 24  SGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSV 83

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
             AC   G L V K +     +   N+ + L NALIDMF KC  V+ A  +F  M  + +
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDV 143

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWTS+       G   + + LF EM   G+  + +    +L AC+    +  GRE    
Sbjct: 144 VSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKLGREV--- 198

Query: 239 MKNDFGIIPKIEHYG------CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                G I + E  G       +V+M   S  +K+A      M    + + W  +++A
Sbjct: 199 ----HGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTA 251



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI      GD+ +AL LF  +    + +WT +I+G   HG   +A+ ++  +L   V PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 213 DVAFVGLLSACSHCG-LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
               + +  AC+  G LV   + + D+++  FG    +     ++DM  +   V  A   
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQ--FGFNKDLVLGNALIDMFGKCKFVNGARCV 134

Query: 272 IQKMPIEANPIIWRTL 287
              M ++ + + W ++
Sbjct: 135 FDDMVVK-DVVSWTSM 149


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/416 (43%), Positives = 269/416 (64%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G IEL  K F+EM  ++ V+W+AMI GY     + + + LF++M  SG  P+  ++ +VL
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C++L AL++GK V   I K  V+ ++    +L+ M+ KCGD++ A KLF  M  + +V
Sbjct: 235 LGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVV 294

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W ++I+G A HG G +A+ LF++M + G+ PD + FV +LSAC+H G VD G EYF+SM
Sbjct: 295 TWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSM 354

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+G+  K +HY C+VD+L R G++ EA + I+KMP + +  I+ TL+ AC     L+L
Sbjct: 355 VRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLEL 414

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE   K L+  +P   + YV L+++YA + RW+    +R  M    + K PG + IE+ +
Sbjct: 415 AEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKS 474

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EF  GD+ H +   I+E L+E+ RKM+ AGYVP     L D+ EE K+  L +HSEK
Sbjct: 475 VVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEK 534

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIA+ L++ P GTPIR+ KNLRVC DCHSATK+IS I  R I+VRD  RFHHF+ 
Sbjct: 535 LAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQ 590



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E G  PN  +   VL  C+ +  L LGK VH  + K     +I    +L+ MY  C G
Sbjct: 218 MVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKC-G 276

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E   K+F  M ++D V+W+AMI GYA+ G    A+ LF +M+  G+ PD IT V VLS
Sbjct: 277 DLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC   G +++G ++  S +    V         ++D+  + G + +A+ L + M
Sbjct: 337 ACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKM 390



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           DI   N ++  Y      +E  R  FD+M  +D+ SW+ MI G+++ G+   A +LF  M
Sbjct: 67  DIFSYNIMLACYLH-NADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
            +     + ++   ++S   + G L++ K      E   V RSV    A+I  F K G +
Sbjct: 126 PVR----NSVSWNAMISGYVESGDLDLAK---QLFEVAPV-RSVVAWTAMITGFMKFGKI 177

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           + A K F  M  + +V+W ++IAG   + +    + LF+ M+E+G  P+  +   +L  C
Sbjct: 178 ELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGC 237

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           S+   +  G++    +     +   I     ++ M C+ G +++A +    MP + + + 
Sbjct: 238 SNLSALKLGKQVHQLICKS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVT 295

Query: 284 WRTLISACCARG 295
           W  +IS     G
Sbjct: 296 WNAMISGYAQHG 307



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 13/155 (8%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA--LFEEMLEAG 208
           N +I    + GD++ AL++F SM  +T V+W S++AG + + RG   VA  LF+ + E  
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYS-NRRGKIKVARQLFDRIPE-- 65

Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
             PD  ++  +L+   H   V+  R +FD M      +     +  M+    ++G + +A
Sbjct: 66  --PDIFSYNIMLACYLHNADVESARLFFDQMP-----VKDTASWNTMISGFSQNGMMDQA 118

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
            E    MP+  N + W  +IS     G+L LA+ +
Sbjct: 119 RELFLVMPVR-NSVSWNAMISGYVESGDLDLAKQL 152


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/477 (39%), Positives = 289/477 (60%), Gaps = 6/477 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  + FT   VL A   + DL  G   H  ++K  +  + HV + L+ +Y  C G +  
Sbjct: 235 GLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLD 294

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            RKVFDE+S  D V W+ MI GY+    LS +A++ FRQ+Q+ G  PD+ ++V V+SAC+
Sbjct: 295 CRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACS 354

Query: 124 DLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           ++ +   G+ V     K  + +  + + NALI M++KCG++  A  LF +M     VS+ 
Sbjct: 355 NMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYN 414

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           S+IAG A HG G +++ LF+ MLE G  P ++ F+ +L+AC+H G V+ G+ YF+ MK  
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           FGI P+  H+ CM+D+L R+G++ EA   I+ +P +     W  L+ AC   G ++LA  
Sbjct: 475 FGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIK 534

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
              RL+  +P++ + YV+L++IY+   R +    +R++M  RG+KK PG + IE++  I+
Sbjct: 535 AANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIH 594

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD----INEEDKEDALNKHSE 418
            FV  D  H   K+I E L+EM RK+KK GY P     L+     + + ++E  L  HSE
Sbjct: 595 IFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSE 654

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA++F L+ T  G PI + KNLR+C DCH+A K+IS++  REI VRD HRFH FKD
Sbjct: 655 KLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKD 711



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 156/301 (51%), Gaps = 13/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  +  + FT   ++ AC GI ++ L + +H   +       + V N L+  Y S  G
Sbjct: 131 MREAFLDMDGFTLSGIITAC-GI-NVGLIRQLHALSVVTGLDSYVSVGNALITSY-SKNG 187

Query: 61  GIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R++F  +SE RD VSW++M+  Y +    + A++L+ +M + G+  D  T+ +VL
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-VDKALKLFRSMNGRTI 178
           +A T++  L  G    + + K   +++  + + LID+++KCG  +    K+F  ++   +
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 179 VSWTSVIAGLAMH-GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           V W ++I+G +++     EA+  F ++   G  PDD + V ++SACS+     +GR+   
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 238 -SMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            ++K D   IP  +I     ++ M  + G +++A      MP E N + + ++I+     
Sbjct: 368 LALKLD---IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQH 423

Query: 295 G 295
           G
Sbjct: 424 G 424



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 139/326 (42%), Gaps = 76/326 (23%)

Query: 17  LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------------------ 58
           LK C    DL  GKS+H   +K       ++ N  + +Y  C                  
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 59  ------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
                       E  +E+  ++FDEM + DSVS++ +I  YAR G +  A  LF +M+ +
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 107 GVCPDEITMVTVLSAC-------TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159
            +  D  T+  +++AC         L AL V   ++S++       SVG  NALI  ++K
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYV-------SVG--NALITSYSK 185

Query: 160 CGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
            G + +A ++F  ++  R  VSW S++     H  G +A+ L+ EM   G+  D      
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLAS 245

Query: 219 LLSACS-----------HCGLVDKGREYFDSMKNDFGIIPKIEHY-GCMVDMLCRSGRVK 266
           +L+A +           H  L+  G  Y  +     G+I       GCM+D  CR    K
Sbjct: 246 VLTAFTNVQDLLGGLQFHAKLIKSG--YHQNSHVGSGLIDLYSKCGGCMLD--CR----K 297

Query: 267 EAHEFIQKMPIEANP--IIWRTLISA 290
              E        +NP  ++W T+IS 
Sbjct: 298 VFDEI-------SNPDLVLWNTMISG 316



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 4/185 (2%)

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L  C     L  GK + +   K  V  S  L N  + +++KC  +  A ++F   +   +
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            S+ ++I+  A       A  LF+EM +    PD V++  L++A +  G      + F  
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M+  F  +      G +       G +++ H       +++   +   LI++    G LK
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 299 LAESI 303
            A  I
Sbjct: 191 EARRI 195


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 292/471 (61%), Gaps = 8/471 (1%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P +FT+  VL+AC   G L  GK +HG V+K+ F +D  + + L+ +Y +  G +E 
Sbjct: 314 GMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN-SGCMED 372

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G + F    + D V+W+AM+ G  +  L   A+ LF +   +G+ PD  T+ +V++AC  
Sbjct: 373 GFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACAS 432

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ ++ F  K   +R   + N+ + M+A+ GDVD A + F+ M    +VSW++V
Sbjct: 433 LAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAV 492

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I+  A HG   +A+  F+EM++A V P+++ F+G+L+ACSH GLVD+G  Y+++M  D+G
Sbjct: 493 ISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYG 552

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
           + P I+H  C+VD+L R+GR+ +A  FI      A+P+IWR+L+++C    +L+  + + 
Sbjct: 553 LSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVA 612

Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
            R++  EP   ++YV+L ++Y         +K R++M +RG+KK PG + IEL   ++ F
Sbjct: 613 NRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSF 672

Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
           V GDKSH +S  IY  L+EM  +++K     T +E+      + +++ +N HSEKLA+A 
Sbjct: 673 VAGDKSHPESSAIYTKLEEMLSRIEK--LATTDTEI-----SKREQNLMNCHSEKLAVAL 725

Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            ++  P   PIR++KNLRVC DCHS  K ISK  NREI++RD  RFHHF+D
Sbjct: 726 GMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRD 776



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 29/304 (9%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  ++F+Y   L AC+  G L  G++VH   +       + V N+LV MY  C G +  
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKC-GEMGE 162

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R+VFD   ERD VSW++++ GY R G   + + +F  M+  G+  +   + +V+  C+ 
Sbjct: 163 ARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSG 222

Query: 125 L--GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
              G +++ + V   + K  ++  V L +A+IDM+AK G + +A  LFRS+    +V + 
Sbjct: 223 RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFN 282

Query: 183 SVIAGL----AMHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY- 235
           ++IAG      + G+ +  EA+ L+ E+   G+ P +  F  +L AC+  G ++ G++  
Sbjct: 283 TMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIH 342

Query: 236 -----FDSMKNDF---GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
                +   ++DF    +I    + GCM D   R  R    H+ +           W  +
Sbjct: 343 GQVIKYTFQEDDFIGSALIDLYFNSGCMEDGF-RCFRSSPKHDIVT----------WTAM 391

Query: 288 ISAC 291
           +S C
Sbjct: 392 VSGC 395



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 26/329 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGD--LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M   G+  N F    V+K C+G GD  +++ ++VHG V+K     D+ + + ++ MY   
Sbjct: 201 MRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAK- 259

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYAR----LG--LSTDAIDLFRQMQISGVCPDE 112
           +G +     +F  + E + V ++ MI G+ R    +G  ++++A+ L+ ++Q  G+ P E
Sbjct: 260 KGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTE 319

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            T  +VL AC   G LE GK +   + K        + +ALID++   G ++   + FRS
Sbjct: 320 FTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRS 379

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
                IV+WT++++G   +    +A++LF E L AG+ PD      +++AC+   +   G
Sbjct: 380 SPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAG 439

Query: 233 REYFDSMKNDFGIIPKIEHYGCM----VDMLCRSGRVKEAHEFIQKMPIEANPII-WRTL 287
            +        F      + +  M    V M  RSG V  A    Q+M  E++ ++ W  +
Sbjct: 440 EQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM--ESHDVVSWSAV 492

Query: 288 ISA----CCARGELK-LAESITKRLIGNE 311
           IS      CAR  L    E +  +++ NE
Sbjct: 493 ISCHAQHGCARDALHFFDEMVDAKVVPNE 521



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 45  IHVQNTLVHMYGSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           + ++NTL+  Y  C  GG    R++ DEM  R++VS++ +I  Y+R GL+  +++   + 
Sbjct: 43  LFLRNTLLAAY--CRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           + +GV  D  +    L+AC+  G L  G+ V +      ++  V + N+L+ M++KCG++
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            +A ++F     R  VSW S+++G    G   E V +F  M   G+  +  A   ++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPK------IEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           S      +G    D  +   G + K      +     M+DM  + G + EA    + +  
Sbjct: 221 S-----GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ- 274

Query: 278 EANPIIWRTLISACC 292
           E N +++ T+I+  C
Sbjct: 275 EPNVVMFNTMIAGFC 289


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/467 (38%), Positives = 286/467 (61%), Gaps = 2/467 (0%)

Query: 10  KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF 69
           +F +  +L   +   D  +G+ +H   +      +I V N+LV MY  C G  E    +F
Sbjct: 311 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC-GKFEEAEMIF 369

Query: 70  DEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129
             ++ R +V W+AMI  Y + G   + + LF +M+ + V  D+ T  ++L A   + +L 
Sbjct: 370 TNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLS 429

Query: 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           +GK + SFI K     +V   +AL+D++AKCG +  A++ F+ M  R IVSW ++I+  A
Sbjct: 430 LGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 489

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
            +G     +  F+EM+ +G+ PD V+F+G+LSACSH GLV++G  +F+SM   + + P+ 
Sbjct: 490 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 549

Query: 250 EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
           EHY  +VDMLCRSGR  EA + + +MPI+ + I+W ++++AC      +LA     +L  
Sbjct: 550 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 609

Query: 310 NEPMHESN-YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGD 368
            E + ++  YV +S+IYA   +WE  +K+ + M  RG+KK+P  + +E+ +E + F   D
Sbjct: 610 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSAND 669

Query: 369 KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLK 428
           + H Q +EI + +D + + M++ GY P TS  L + +E+ K ++L  HSE+LAIAFAL+ 
Sbjct: 670 RCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALIS 729

Query: 429 TPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           TP G+PI ++KNLR C DCH+A K ISKI  REI VRD  RFHHF+D
Sbjct: 730 TPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRD 776



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 151/288 (52%), Gaps = 3/288 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           + FT+  VL A  G+ D+ LG+ +H  V+K  F  ++ V N L+  Y   +  I+  RK+
Sbjct: 209 DSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID-ARKL 267

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           FDEM E+D VS++ +I GYA  G    A DLFR++Q +     +    T+LS  ++    
Sbjct: 268 FDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW 327

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
           E+G+ + +       +  + + N+L+DM+AKCG  ++A  +F ++  R+ V WT++I+  
Sbjct: 328 EMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 387

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248
              G   E + LF +M +A V  D   F  LL A +    +  G++   S     G +  
Sbjct: 388 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSN 446

Query: 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +     ++D+  + G +K+A +  Q+MP + N + W  +ISA    GE
Sbjct: 447 VFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGE 493



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 13/224 (5%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   RK+FD M ER +V+W+ +IGGY++L    +A +LF QMQ  G  PD +T VT+L
Sbjct: 92  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL 151

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S C           V++ I K   +  + + N L+D + K   +D A +LF+ M      
Sbjct: 152 SGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSF 211

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV--AFV--GLLSACSHCGLVDKGREY 235
           ++ +V+        GL+ + L +++    +  + V   FV   LL   S    V   R+ 
Sbjct: 212 TFAAVLCA----NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKL 267

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279
           FD M    G+      Y  ++      G+ K A +  +++   A
Sbjct: 268 FDEMPEQDGV-----SYNVIISGYAWDGKHKYAFDLFRELQFTA 306



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 10/207 (4%)

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
           ++M +++    N +I  + K G++ +A KLF  M  RT V+WT +I G +   +  EA  
Sbjct: 71  EKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFE 130

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
           LF +M   G  PD V FV LLS C+   + ++  +   +     G   ++     +VD  
Sbjct: 131 LFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQ-VQTQIIKLGYDSRLIVGNTLVDSY 189

Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
           C+S R+  A +  ++MP E +   +  ++ A     ++ L + I   +I      ++N+V
Sbjct: 190 CKSNRLDLACQLFKEMP-EIDSFTFAAVLCANIGLDDIVLGQQIHSFVI------KTNFV 242

Query: 320 LLSHIYAKLLRWEKKTKIREVMDKRGM 346
               +   LL +  K     V+D R +
Sbjct: 243 WNVFVSNALLDFYSKHD--SVIDARKL 267


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/474 (38%), Positives = 287/474 (60%), Gaps = 2/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+  G+ P+ F    VL   AG   L  GKSVHG  ++      + V N L+ MY +C  
Sbjct: 603  MVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRN 662

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R VFD ++ +D +SW+ +IGGY+R   + ++  LF  M +    P+ +TM  +L 
Sbjct: 663  -MEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILP 720

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A   + +LE G+ + ++  ++         NAL+DM+ KCG +  A  LF  +  + ++S
Sbjct: 721  AVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLIS 780

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WT +IAG  MHG G +AVALFE+M  +GV PD  +F  +L AC H GL  +G ++F++M+
Sbjct: 781  WTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMR 840

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             ++ I PK++HY C+VD+L  +G +KEA EFI+ MPIE +  IW +L+  C    ++KLA
Sbjct: 841  KEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLA 900

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E +  R+   EP +   YVLL++IYA+  RWE   K++  +  RG+++  G + IE+  +
Sbjct: 901  EKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGK 960

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ F+  +++H +   I E LD + R+M++ G+ P     L+  N+   ++AL  HS KL
Sbjct: 961  VHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKL 1020

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            A+ F +L  P G PIR+ KN +VC+ CH A KFISK+ NREI++RD  RFHHF+
Sbjct: 1021 AVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFE 1074



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 149/306 (48%), Gaps = 23/306 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GVSP+      VLK  A +G +  G+ +HG + K   G+   V N L+ +Y  C G +E 
Sbjct: 193 GVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRC-GCMED 251

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VFD M  RD++SW++ I GY   G    A+DLF +M   G     +T+++VL AC +
Sbjct: 252 AMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAE 311

Query: 125 LGALEVGKWVESF---------IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           LG   VGK V  +         +E         L + L+ M+ KCGD+  A ++F +M  
Sbjct: 312 LGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPS 371

Query: 176 RTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS-----ACSHCGLV 229
           +  V  W  ++ G A      E++ LFE+M E G+ PD+ A   LL      +C+  GLV
Sbjct: 372 KGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLV 431

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
             G  Y   +K  FG    +     ++    +S  +  A     +MP + + I W ++IS
Sbjct: 432 AHG--YL--VKLGFGTQCAV--CNALISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVIS 484

Query: 290 ACCARG 295
            C + G
Sbjct: 485 GCTSNG 490



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 138/292 (47%), Gaps = 21/292 (7%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSER--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           LV  Y  C G +   R VFDEM  R  D   W++++  YA+ G   + + LFRQMQ  GV
Sbjct: 136 LVLAYLKC-GDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGV 194

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
            PD   +  VL     LG++  G+ +   +EK  +  +  + NALI ++++CG ++ A++
Sbjct: 195 SPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQ 254

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F SM+ R  +SW S I+G   +G    AV LF +M   G     V  + +L AC+  G 
Sbjct: 255 VFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGF 314

Query: 229 VDKGREYFD-SMKNDFGIIPKIEHYGCMVD---------MLCRSGRVKEAHEFIQKMPIE 278
              G+     SMK+  G++  +E     +D         M  + G +  A      MP +
Sbjct: 315 ELVGKVVHGYSMKS--GLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSK 372

Query: 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
            N  +W  ++      G  K AE   + L+  E MHE       H  + LL+
Sbjct: 373 GNVHVWNLIMG-----GYAKAAE-FEESLLLFEQMHELGITPDEHALSCLLK 418



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 1/220 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G++P++     +LK    +     G   HG ++K  FG    V N L+  Y     
Sbjct: 401 MHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAK-SN 459

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+    VFD M  +D++SW+++I G    GL+++AI+LF +M + G   D  T+++VL 
Sbjct: 460 MIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLP 519

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC       VG+ V  +  K  +     L NAL+DM++ C D     ++FR+M  + +VS
Sbjct: 520 ACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVS 579

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
           WT++I      G   +   L +EM+  G+ PD  A   +L
Sbjct: 580 WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 136/301 (45%), Gaps = 15/301 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---------FQFGDDIHVQNTL 51
           M   G   +  T   VL ACA +G   +GK VHG  +K          Q G D  + + L
Sbjct: 290 MWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKL 349

Query: 52  VHMYGSCEGGIELGRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110
           V MY  C G +   R+VFD M  + +V  W+ ++GGYA+     +++ LF QM   G+ P
Sbjct: 350 VFMYVKC-GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITP 408

Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
           DE  +  +L   T L     G     ++ K        +CNALI  +AK   +D A+ +F
Sbjct: 409 DEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVF 468

Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
             M  +  +SW SVI+G   +G   EA+ LF  M   G   D    + +L AC+      
Sbjct: 469 DRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWF 528

Query: 231 KGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            GR     S+K   G+I +      ++DM          ++  + M  + N + W  +I+
Sbjct: 529 VGRVVHGYSVKT--GLIGETSLANALLDMYSNCSDWHSTNQIFRNMA-QKNVVSWTAMIT 585

Query: 290 A 290
           +
Sbjct: 586 S 586



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 146/299 (48%), Gaps = 6/299 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           VL ACA      +G+ VHG  +K     +  + N L+ MY +C        ++F  M+++
Sbjct: 517 VLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSD-WHSTNQIFRNMAQK 575

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           + VSW+AMI  Y R GL      L ++M + G+ PD   + +VL       +L+ GK V 
Sbjct: 576 NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVH 635

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
            +  +  + + + + NAL++M+  C ++++A  +F  +  + I+SW ++I G + +    
Sbjct: 636 GYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFAN 695

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           E+ +LF +ML     P+ V    +L A +    +++GRE   +     G +        +
Sbjct: 696 ESFSLFSDML-LQFKPNTVTMTCILPAVASISSLERGRE-IHAYALRRGFLEDSYTSNAL 753

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN--EP 312
           VDM  + G +  A     ++  + N I W  +I+     G  K A ++ +++ G+  EP
Sbjct: 754 VDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEP 811


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/475 (38%), Positives = 290/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+      VL A   + DL  G+S+H +V+K     +  +  +L  MY  C G
Sbjct: 213 MRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKC-G 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +FD+M   + + W+AMI GYA+ G + DAIDLF +M    V PD I++ + +S
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS 331

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G+LE  +W++ ++ +      V + +ALIDMFAKCG V+ A  +F     R +V 
Sbjct: 332 ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVV 391

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G  +HG+  EA++L+  M   GV P+DV F+GLL AC+H G+V +G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA 451

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P+ +HY C++D+L R+G + +A+E I+ MP++    +W  L+SAC     ++L 
Sbjct: 452 -DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   ++L   +P +  +YV LS++YA    W++  ++R  M ++G+ K  G + +E+   
Sbjct: 511 KYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +  F  GDKSH + +EI   ++ +  ++K+ G+V      L D+N+E+ E+ L  HSE++
Sbjct: 571 LEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            IA+ L+ TP GT +RI KNLR C +CH+ATK ISK+  REIVVRD +RFHHFKD
Sbjct: 631 TIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKD 685



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 170/323 (52%), Gaps = 6/323 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           VSP+ FT+P +LKAC G+  L +G+ VH  V +  F  D+ VQN L+ +Y  C   +   
Sbjct: 115 VSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRR-LGCA 173

Query: 66  RKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           R VF+   + ER  VSW+A++  YA+ G   +A+++F QM+   V PD + +V+VL+A T
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFT 233

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  LE G+ + + + K  +     L  +L  M+AKCG V  A  LF  M    ++ W +
Sbjct: 234 CLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+G A +G   +A+ LF EM+   V PD ++    +SAC+  G +++ R + D   +  
Sbjct: 294 MISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQAR-WMDEYVSRS 352

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                +     ++DM  + G V+ A     +  ++ + ++W  +I      G+ + A S+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRT-LDRDVVVWSAMIVGYGLHGQAREAISL 411

Query: 304 TKRLIGNEPMHESNYVLLSHIYA 326
             R +  + +H ++   L  + A
Sbjct: 412 Y-RAMERDGVHPNDVTFLGLLIA 433



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 7/278 (2%)

Query: 36  VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
           VL  QF     +   L+H   S  G I   R+VFD++       W+A+I GY+R     D
Sbjct: 46  VLGLQFSG--FLITKLIHA-SSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQD 102

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           A+ ++ +MQ++ V PD  T   +L AC  L  L++G++V + + +      V + N LI 
Sbjct: 103 ALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIA 162

Query: 156 MFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           ++AKC  +  A  +F    +  RTIVSWT++++  A +G  +EA+ +F +M +  V PD 
Sbjct: 163 LYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDC 222

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           VA V +L+A +    +++GR    S+    G+  + +    +  M  + G+V  A     
Sbjct: 223 VALVSVLNAFTCLQDLEQGRSIHASVMK-MGLETEPDLLISLNTMYAKCGQVATAKILFD 281

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           KM    N I+W  +IS     G  K A  +   +I  +
Sbjct: 282 KMK-SPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/506 (38%), Positives = 293/506 (57%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  T   +L ACA + DL  GK +HG  ++     ++ V + LV +Y  C   +  
Sbjct: 260 GVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLS-VRE 318

Query: 65  GRKVFDEMSERDSVSWS-----------------------------------AMIGGYAR 89
            R VFD M  RD VSW+                                   A+IGG   
Sbjct: 319 ARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCME 378

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G S +A+++FR+MQ  G  P+EIT+ ++L AC+    L +GK +  ++ +      +  
Sbjct: 379 NGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTS 438

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+ M+AKCGD++ +  +F  M  + +V+W ++I   AMHG G EA+ LF++ML + V
Sbjct: 439 TTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRV 498

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F G+LS CSH  LV++G + F+SM  D  + P   HY C+VD+  R+GR+ EA+
Sbjct: 499 QPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAY 558

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           +FIQ MP+E     W  L++AC     ++LA+   K+L   EP +  NYV L +I     
Sbjct: 559 KFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAK 618

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W + +++R +M +RG+ K PG + +++ N+++ FV GDKS+ +S +IY  LDE+  KMK
Sbjct: 619 MWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 678

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AGY P T  VL DI++E+K ++L  HSEKLA+AF +L     + IR+ KNLR+C DCH+
Sbjct: 679 MAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHN 738

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K++SK+    IVVRD  RFHHFK+
Sbjct: 739 AIKYMSKVVGVIIVVRDSLRFHHFKN 764



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 1/238 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+   +    KACA  GD    K VH    +     D+ V N L+H YG C+  +
Sbjct: 157 ERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC-V 215

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E  R+VFD++  RD VSW+++   Y + G     +D+FR+M  SGV P+ +T+ ++L AC
Sbjct: 216 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 275

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +L  L+ GK +  F  +  +  ++ +C+AL+ ++AKC  V +A  +F  M  R +VSW 
Sbjct: 276 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 335

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            V+     +    +  +LF +M   GV  D+  +  ++  C   G  ++  E F  M+
Sbjct: 336 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ 393



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  PN+ T   +L AC+   +L +GK +H  V +     D+     L++MY  C G
Sbjct: 392 MQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC-G 450

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L R VFD M  +D V+W+ MI   A  G   +A+ LF +M +S V P+ +T   VLS
Sbjct: 451 DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 510

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
            C+    +E G  +  S     +V       + ++D++++ G +++A K  + M    T 
Sbjct: 511 GCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTA 570

Query: 179 VSWTSVIAGLAMHGR----GLEAVALFEEMLEAGVPPDDVAFVGLL 220
            +W +++A   ++       + A  LFE  +E   P + V+   +L
Sbjct: 571 SAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVSLFNIL 614



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 4/232 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G     R++FD + + D  + S +I      GLS +AI ++  +Q  G+ PD    +   
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 120 SACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            AC   G AL V K V     +  V   V + NALI  + KC  V+ A ++F  +  R +
Sbjct: 172 KACAVSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 230

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWTS+ +     G   + + +F EM  +GV P+ +    +L AC+    +  G+E    
Sbjct: 231 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-IHG 289

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                G++  +     +V +  +   V+EA      MP   + + W  +++A
Sbjct: 290 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTA 340



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 117/315 (37%), Gaps = 76/315 (24%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI +    GD ++A +LF ++      + +++I+ L  HG   EA+ ++  + E G+ PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 213 DVAFVGLLSACS-----------------------------------HCGLVDKGREYFD 237
              F+    AC+                                    C  V+  R  FD
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCAR 294
            +     ++  +  +  +     + G  ++  +  ++M    ++ NP+   +++ AC   
Sbjct: 224 DL-----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 278

Query: 295 GELKLAESITKRLIGNEPMHESNYV--LLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
            +LK  + I    +    M  + +V   L  +YAK L   +   + ++M  R +    G 
Sbjct: 279 KDLKSGKEIHGFAV-RHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 337

Query: 353 TLIELDNEIYE-----------------------FVCGDKSHHQSKEIYEMLDEMGRKMK 389
                 N+ YE                        + G   + +S+E  EM     RKM+
Sbjct: 338 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF----RKMQ 393

Query: 390 KAGYVP---TTSEVL 401
           K G+ P   T S +L
Sbjct: 394 KMGFKPNEITISSIL 408


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/495 (39%), Positives = 284/495 (57%), Gaps = 23/495 (4%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G +P++ T   VL ACA        ++VHG V+K     +  VQN L+ MY    G +
Sbjct: 359 EAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARL-GRM 417

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC------------- 109
           +    +F  +  RD VSW+ +I G    GL ++A  L R+MQ+                 
Sbjct: 418 DEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTS 477

Query: 110 -------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162
                  P+ IT++T+L  C  L A   GK +  +  +  +   + + +AL+DM+AKCG 
Sbjct: 478 VDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGC 537

Query: 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLS 221
           +  A  +F  +  R +++W  +I    MHG G EA+ALF+ M+  G   P++V F+  L+
Sbjct: 538 LALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALA 597

Query: 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN 280
           ACSH GLVD+G E F  MK D+G  P    + C+VD+L R+GR+ EA+  I  M P E  
Sbjct: 598 ACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQ 657

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340
              W T++ AC     +KL     +RL   EP   S+YVLL +IY+    WE  T++R +
Sbjct: 658 VSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGM 717

Query: 341 MDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400
           M +RG+ K PG + IELD  I+ F+ G+ +H +S +++  +D +  +M++ GYVP TS V
Sbjct: 718 MRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCV 777

Query: 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNR 460
           L D++E +K   L  HSEKLAIAF LL+ PPG  IR+ KNLRVCNDCH A KFIS++  R
Sbjct: 778 LHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGR 837

Query: 461 EIVVRDRHRFHHFKD 475
           EIV+RD  RFHHF+D
Sbjct: 838 EIVLRDVRRFHHFRD 852



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 161/343 (46%), Gaps = 44/343 (12%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI----HVQNTLVHMYG 56
           M+  GV P+  T+   L AC+ +  L +G+ VH  VLK    DD+     V + LV MY 
Sbjct: 251 MVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK---DDDLAANSFVASALVDMYA 307

Query: 57  SCEGGIELGRKVFDEMSE--RDSVSWSAMIGGYARL-GLSTDAIDLFRQMQI-SGVCPDE 112
           S E  +   R+VFD + E  R    W+AMI GYA+  G+  +AI+LF +M+  +G  P E
Sbjct: 308 SNE-QVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSE 366

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            TM  VL AC         + V  ++ K+ +  +  + NAL+DM+A+ G +D+A  +F  
Sbjct: 367 TTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAM 426

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEE------------MLEAG--------VPPD 212
           ++ R IVSW ++I G  + G   EA  L  E            MLE            P+
Sbjct: 427 IDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPN 486

Query: 213 DVAFVGLLSACSHCGLVDKGREYF-----DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           ++  + LL  C+      +G+E        ++++D  +         +VDM  + G +  
Sbjct: 487 NITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAV------GSALVDMYAKCGCLAL 540

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
           A     ++P   N I W  LI A    G    A ++  R++ N
Sbjct: 541 ARAVFDRLP-RRNVITWNVLIMAYGMHGLGDEALALFDRMVAN 582



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 172/417 (41%), Gaps = 68/417 (16%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH-----VQNTLVHMYGSCEGGIE 63
           + F  P  +K+ A + D    +++HGA L+      +H     V N L+  Y  C     
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRAL---LHRPTPAVSNALLTAYARCGDLDA 103

Query: 64  LGRKVFDEMSE-RDSVSWSAMIGG---YARLGLSTDAI-DLFRQMQISGVCPDEITMVTV 118
                     + RD+VS++++I     + R G + DA+ D+    ++S       T+V+V
Sbjct: 104 ALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVS-----SFTLVSV 158

Query: 119 LSACTDLG--ALEVGKWVESFIEKQMV---NRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           L AC+ L      +G+   +F  K       R     NAL+ M+A+ G VD A +LF S 
Sbjct: 159 LLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSS 218

Query: 174 NGRT--IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231
                 +V+W ++I+ L   GR  EAV +  +M+  GV PD V F   L ACS   L+  
Sbjct: 219 GAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGV 278

Query: 232 GREYF-------DSMKNDFGIIPKIEHYGC---------MVDMLCRSGRV---------- 265
           GRE         D   N F     ++ Y           + DM+   GR           
Sbjct: 279 GREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICG 338

Query: 266 --------KEAHEFIQKMPIEANPIIWRTLISA---CCARGELKLAESITKRLIGNEPMH 314
                   +EA E   +M  EA      T ++     CAR E+   +      +    M 
Sbjct: 339 YAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMA 398

Query: 315 ESNYV--LLSHIYAKLLRWEKKTKIREVMDKRGMKK----IPGSTLIELDNEIYEFV 365
            + +V   L  +YA+L R ++   I  ++D R +      I G  +  L +E ++ V
Sbjct: 399 SNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLV 455


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 293/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G   ++FT   VL ACA    L+  + +H   +K     ++ V   L+ +Y  C G
Sbjct: 156 MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKC-G 214

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++    VF+ M +R  V+WS+M  GY +  +   A+ LFR+   +G+  D+  M +V+ 
Sbjct: 215 LMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVIC 274

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L A+  GK + + + K     ++ + ++LIDM+AKCG ++++ K+FR +  R +V 
Sbjct: 275 ACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVL 334

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+GL+ H R LE + LFE+M + G+ P+DV FV +LSAC H GLV KG++YFD M 
Sbjct: 335 WNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMT 394

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +  + P + HY CMVD L R+G++ EA++ I K+P  A+  +W +L+++C   G L+LA
Sbjct: 395 KEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELA 454

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   K+L   EP +  NY+LLS++YA   +W++  K+R+++ +  +KK  G + IE+ ++
Sbjct: 455 EVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDK 514

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ G+++H +  EIY  L+E+  +++K GY   T   L  + E  K++ L  HSEKL
Sbjct: 515 VHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKL 574

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A    LL  PP  PIRI+KNLR+C DCHS  K  SK + R+++VRD +RFHHFK+
Sbjct: 575 AFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKN 629



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 148/274 (54%), Gaps = 3/274 (1%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK CA    L  GK+ H  +L      D+   N L++MY  C G ++  R+VFDEM  R
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKC-GSVDFARQVFDEMPSR 128

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
             VSW+ MIG   + G   +A+DL  QMQ  G    E T+ +VL AC    AL   + + 
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
           +F  K  ++ +V +  AL+D++AKCG +  A+ +F SM  R++V+W+S+ AG   +    
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCM 255
           +A+ALF +  E G+  D      ++ AC+    + +G++  +++ +  G    I     +
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ-MNALLSKSGFCSNIFVASSL 307

Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +DM  + G ++E+++  + +  + N ++W  +IS
Sbjct: 308 IDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMIS 340


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 182/417 (43%), Positives = 285/417 (68%), Gaps = 6/417 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTV 118
           G ++  RK+F+ M  R+ V+W++MI GYA+ G S  AI+LF++M  +  + PDE+TMV+V
Sbjct: 183 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 242

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +SAC  LGALE+G WV  F+ +  +  S+   NA+I M+++CG ++ A ++F+ M  R +
Sbjct: 243 ISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDV 302

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS+ ++I+G A HG G+EA+ L   M E G+ PD V F+G+L+ACSH GL+++GR+ F+S
Sbjct: 303 VSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES 362

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           +K+     P I+HY CMVD+L R G +++A   +++MP+E +  ++ +L++A     +++
Sbjct: 363 IKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVE 417

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E    +L   EP +  N++LLS+IYA   RW+   +IRE M K G+KK  G + +E  
Sbjct: 418 LGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYG 477

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            ++++F+  D+SH +S +IY++L E+ +KM++AGY+   S VL D+ EE+KE+ +  HSE
Sbjct: 478 GKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSE 537

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLAI +ALL +  G  IR+VKNLRVC DCH+A K ISK+  R I+VRD +RFH F D
Sbjct: 538 KLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFND 594



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 148/308 (48%), Gaps = 33/308 (10%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-------- 56
           GV P+ F YP ++K+ AG G    G   H  VLK   G D  V+N ++ MY         
Sbjct: 25  GVRPDAFVYPILIKS-AGTG----GIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNA 79

Query: 57  --------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
                     EG  +    +FD M ER+ ++W+AM+ GYA++     A   F  M    V
Sbjct: 80  MVSGYWKWESEGQAQW---LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV 136

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
               ++   +LS     G  E    +  F E     R+    NA+I  + + GD+D A K
Sbjct: 137 ----VSWNAMLSGYAQNGLAEEA--LRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARK 190

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCG 227
           LF +M GR +V+W S+IAG A +G+   A+ LF+EM+ A  + PD+V  V ++SAC H G
Sbjct: 191 LFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG 250

Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
            ++ G  +      +  I   I  +  M+ M  R G +++A    Q+M    + + + TL
Sbjct: 251 ALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTL 308

Query: 288 ISACCARG 295
           IS   A G
Sbjct: 309 ISGFAAHG 316



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 50/237 (21%)

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG------ALEVGKWVES 136
           M+  Y+ L      + ++ QMQ  GV PD      ++ +    G       L++G   ++
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSDA 60

Query: 137 FIEKQMVN---RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           F+   +++   R V   NA++  + K     +A  LF  M  R +++WT+++ G A   +
Sbjct: 61  FVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYA-KVK 119

Query: 194 GLEAVA-LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
            LEA    F+ M E  V    V++  +LS  +  GL ++    FD M   +         
Sbjct: 120 DLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEMLGAY--------- 166

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309
                                      N + W  +ISA    G+L  A  +   + G
Sbjct: 167 --------------------------RNSVTWNAMISAYMRVGDLDSARKLFNTMPG 197


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 287/481 (59%), Gaps = 28/481 (5%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVHMYGSCEG 60
           PN  T   +L ACA +G L  GK  H   +KF          DD+ V N L+ MY  C+ 
Sbjct: 173 PNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKS 232

Query: 61  GIELGRKVFDEM--SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMV 116
            +E+ R +FDE+   +RD V+W+ MIGGYA+ G +  A+ LF +M     C  P++ T+ 
Sbjct: 233 -LEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 291

Query: 117 TVLSACTDLGALEVGKWVESFI--EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
            VL AC  L AL+ GK + +++    ++ +  + + N LIDM++K GDVD A  +F SM+
Sbjct: 292 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 351

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            R  VSWTS++ G  MHG              A +  D + F+ +L ACSH G+VD+G +
Sbjct: 352 KRNAVSWTSLLTGYGMHG--------------AALVLDGITFLVVLYACSHSGMVDRGID 397

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
            F  M  DF + P +EHY CM D+  R+GR+ EA   I  M +E  P++W  L+SAC   
Sbjct: 398 LFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTH 457

Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
              +LAE   K+L+  +  ++  Y LLS+IYA   RW+   +IR +M + G+KK PG + 
Sbjct: 458 SNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSW 517

Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
           ++    +  F  GD++H QS++IYE L ++ +++K  GYVP T+  L D+++E+K D L 
Sbjct: 518 VKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLL 577

Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           +HSEKLA+A+A+L  PPG PIRI KNLR+C D HSA  +IS I   EI++RD  RFH FK
Sbjct: 578 EHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFK 637

Query: 475 D 475
           +
Sbjct: 638 N 638



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 16/276 (5%)

Query: 44  DIHVQNTLVHMY---GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
           D+   N +V  Y   G  E  + L  K+ +E  E D V+WS++I GYA+ G   +A+D+F
Sbjct: 104 DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVF 163

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV-------NRSVGLCNAL 153
           RQM      P+ +T++++LSAC  +GAL  GK    +  K ++          + + NAL
Sbjct: 164 RQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINAL 223

Query: 154 IDMFAKCGDVDKALKLFRSM--NGRTIVSWTSVIAGLAMHGRGLEAVALFEEM--LEAGV 209
           IDM+AKC  ++ A  +F  +    R +V+WT +I G A HG    A+ LF EM  ++  +
Sbjct: 224 IDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCI 283

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEA 268
            P+D     +L AC+    +  G++    +     I   +     C++DM  +SG V  A
Sbjct: 284 VPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA 343

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
                 M  + N + W +L++     G   + + IT
Sbjct: 344 QVVFDSMS-KRNAVSWTSLLTGYGMHGAALVLDGIT 378



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 73/268 (27%)

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVE 135
           SVSW++++  Y+   +  DA+ LFR+M +  G+ PD + +V +L     LG         
Sbjct: 23  SVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFF------- 75

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-----------------NGR-- 176
                      VG  NAL+DM+AKCG ++ A K+F  M                 NGR  
Sbjct: 76  -----------VG--NALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122

Query: 177 ----------------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
                            +V+W+SVI+G A  G G EA+ +F +M      P+ V  + LL
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLL 182

Query: 221 SACSHCGLVDKGRE-YFDSMKNDFGIIPKIEH---------YGCMVDML--CRSGRVKEA 268
           SAC+  G +  G+E +  S+K     I K EH            ++DM   C+S  V  A
Sbjct: 183 SACASVGALLHGKETHCYSVK----FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARA 238

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGE 296
             F +  P + + + W  +I      G+
Sbjct: 239 M-FDEICPKDRDVVTWTVMIGGYAQHGD 265



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 19/190 (10%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF--GDDIHVQNTLVHMYGSCEGGIE 63
           + PN FT   VL ACA +  L  GK +H  VL+      D + V N L+ MY S  G ++
Sbjct: 283 IVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMY-SKSGDVD 341

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
             + VFD MS+R++VSW++++ GY               M  + +  D IT + VL AC+
Sbjct: 342 TAQVVFDSMSKRNAVSWTSLLTGYG--------------MHGAALVLDGITFLVVLYACS 387

Query: 124 DLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSW 181
             G ++ G  +   + K  +V+  V     + D+F + G + +A +L   M+   T V W
Sbjct: 388 HSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVW 447

Query: 182 TSVIAGLAMH 191
            ++++    H
Sbjct: 448 IALLSACRTH 457


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/473 (40%), Positives = 297/473 (62%), Gaps = 4/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIE 63
           G+ P+  T   +    A   D    +SVHG +++  +  + + + N ++ MY    G I+
Sbjct: 369 GLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKL-GVID 427

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSAC 122
              KVF+ +  +D VSW+ +I GY + GL+++AI+++R M+    +  ++ T V++L+A 
Sbjct: 428 SAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAY 487

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             +GAL+ G  +   + K  ++  V +   LID++ KCG +  A+ LF  +   + V W 
Sbjct: 488 AHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWN 547

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+   +HG G +A+ LF EM + GV PD V F+ LLSACSH GLVD+G+ +F  M+ +
Sbjct: 548 AIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-E 606

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P ++HYGCMVD+L R+G ++ A++FI+ MP+  +  IW  L+ AC   G ++L + 
Sbjct: 607 YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKF 666

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
            + RL   +  +   YVLLS+IYA + +WE   K+R +  +RG+KK PG + IE++  + 
Sbjct: 667 ASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVD 726

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  G++SH + KEIY  L  +  KMK  GY+P  S VL D+ E++KE  L  HSE+LAI
Sbjct: 727 IFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 786

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF ++ TPP + IRI KNLRVC DCH+ATKFIS+I  REIVVRD  RFHHFK+
Sbjct: 787 AFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKN 839



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 5/285 (1%)

Query: 11  FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
           +T+P VLKAC  + D   G+ +H  V K  F  D+ V  +L+HMY S  G + + R +FD
Sbjct: 176 YTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMY-SRFGFVGIARSLFD 231

Query: 71  EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           +M  RD  SW+AMI G  + G +  A+D+  +M++ G+  D +T+ ++L  C  LG +  
Sbjct: 232 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIST 291

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
              +  ++ K  +   + + NALI+M+AK G++  A K+F+ M  R +VSW S+IA    
Sbjct: 292 ATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQ 351

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
           +   + A   F +M   G+ PD +  V L S  +        R     +     ++  + 
Sbjct: 352 NDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVV 411

Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
               ++DM  + G +  AH+    +P++ + + W TLIS     G
Sbjct: 412 IGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISGYTQNG 455



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 169/323 (52%), Gaps = 9/323 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G++ +  T   +L  CA +GD++    +H  V+K     ++ V N L++MY    G +  
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKF-GNLGD 326

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            +KVF +M  RD VSW+++I  Y +      A   F +MQ++G+ PD +T+V++ S    
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 125 LGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
               +  + V  FI ++  +  +V + NA++DM+AK G +D A K+F  +  + +VSW +
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNT 446

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKN 241
           +I+G   +G   EA+ ++  M E   +  +   +V +L+A +H G + +G R +   +K 
Sbjct: 447 LISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT 506

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
           +  +   +    C++D+  + GR+ +A     ++P E++ + W  +IS     G  + A 
Sbjct: 507 NLHLDVFVG--TCLIDLYGKCGRLVDAMCLFYQVPRESS-VPWNAIISCHGIHGHGEKAL 563

Query: 302 SITKRLI--GNEPMHESNYVLLS 322
            + + +   G +P H +   LLS
Sbjct: 564 KLFREMQDEGVKPDHVTFISLLS 586



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ-MQISGVC 109
           LV++Y S  G + L R  FD++  +D  +W++MI  Y R G   +AID F Q + ++   
Sbjct: 114 LVNLYASL-GDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQ 172

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
            D  T   VL AC     L  G+ +  ++ K      V +  +LI M+++ G V  A  L
Sbjct: 173 ADFYTFPPVLKACQ---TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSL 229

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  R + SW ++I+GL  +G   +A+ + +EM   G+  D V    +L  C+  G +
Sbjct: 230 FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDI 289

Query: 230 DKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
                 +   +K+  G+  ++     +++M  + G + +A +  Q+M +  + + W ++I
Sbjct: 290 STATLIHLYVIKH--GLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSII 346

Query: 289 SA 290
           +A
Sbjct: 347 AA 348


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 291/475 (61%), Gaps = 14/475 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           +  +  F LKA A   D      +H  VL+     D+ +  TL+  Y  C+  +   RKV
Sbjct: 103 DALSLSFALKASARCSDGPATLQLHALVLRLGCTADVRLITTLLDSYAKCDE-LASARKV 161

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------GVCPDEITMVTVLSAC 122
           FDEM+ RD  SW+A++ G A+    + A+ LF ++  S         P+ +T++  LSAC
Sbjct: 162 FDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSAC 221

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVS 180
             +G+L+ G  V  F  K  V  +V +CNALIDM++KCG + +AL++F S+    RT+VS
Sbjct: 222 AQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVS 281

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           + + I  ++MHG G +A+ LF+EM    + PD+V ++ +L  C+H GLVD+G   F  M+
Sbjct: 282 YNTAIQAISMHGHGGDALKLFDEM-PTCIEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR 340

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
               + P ++HYG +VD+L R+GR+ EA++ I+ MP  A+ ++W+TL+ A    G+++LA
Sbjct: 341 ----VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELA 396

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E    +L       + +YVLLS++YA   RW    ++R+ M    ++K+PG +  E+   
Sbjct: 397 EVAATKLTELGSNVDGDYVLLSNVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGV 456

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +++F+ GDK H + +EIY  L E+  ++ + GY P TS VL DI EE+K+ AL+ HSEKL
Sbjct: 457 MHKFINGDKEHPRLQEIYRALGEIMSRIGELGYEPETSNVLHDIGEEEKQYALSYHSEKL 516

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAF L+ TPPG  +R++KN+R+C DCH   K ISK Y R I++RDR RFH F+D
Sbjct: 517 AIAFGLIATPPGETLRVIKNIRICGDCHVVAKLISKAYGRAIIIRDRARFHRFED 571



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 7   SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
           +PN  T    L ACA IG L  G  VH    K   G ++ V N L+ MY  C G +    
Sbjct: 208 APNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKC-GSLARAL 266

Query: 67  KVFDEMSERDS--VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           +VF  +   D   VS++  I   +  G   DA+ LF +M  + + PDE+T + VL  C  
Sbjct: 267 EVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMP-TCIEPDEVTYIAVLCGCNH 325

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTS 183
            G ++ G  V        V  +V     ++D+  + G + +A    +SM     IV W +
Sbjct: 326 AGLVDEGLRV---FHGMRVPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADIVLWQT 382

Query: 184 VIAGLAMHG 192
           ++     HG
Sbjct: 383 LLGASKTHG 391


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/475 (37%), Positives = 287/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++   V PN+++   VL+AC  +  L+ GK +H   +K     D+ V N L+  Y  C  
Sbjct: 355 LMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCND 414

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K+F  + + + VSW+ ++ G+++ GL  +A+ +F +MQ + +   ++T  +VL 
Sbjct: 415 -MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    ++     +   IEK   N    + N+LID +AKCG +  ALK+F+ +  R I+S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G A+HG+  +A+ LF+ M ++ V  +D+ FV LLS CS  GLV+ G   FDSM+
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI P +EHY C+V +L R+GR+ +A +FI  +P   + ++WR L+S+C     + L 
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 653

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               ++++  EP  E+ YVLLS++YA     ++   +R+ M   G++K+PG + +E+  E
Sbjct: 654 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGE 713

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G   H   + I  ML+ +  K  + GY+P  + VL D+++E K   L  HSE+L
Sbjct: 714 IHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERL 773

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L+ TPPG PIRI+KNLR C DCH+A   ISKI  REI+VRD +RFHHF+D
Sbjct: 774 ALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFED 828



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN F    VLKA   +  + LGK +HG  +K     + HV   L+ MY  C G I+ 
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKC-GDIKD 316

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            R  F+ +   D +  S MI  YA+   +  A +LF ++  S V P+E ++ +VL ACT+
Sbjct: 317 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 376

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           +  L+ GK + +   K      + + NAL+D +AKC D+D +LK+F S+     VSW ++
Sbjct: 377 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 436

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDKGREYFDSMKNDF 243
           + G +  G G EA+++F EM  A +P   V +  +L AC S   +   G+ +    K+ F
Sbjct: 437 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 496

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
                I +   ++D   + G +++A +  Q + +E + I W  +IS     G+   A  +
Sbjct: 497 NNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALEL 553

Query: 304 TKRLIGNEPMHESN 317
             R+  N+   ESN
Sbjct: 554 FDRM--NKSNVESN 565



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 1/226 (0%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+F    +LK    +    L   VH    K     +  V + L+  Y  C   +     V
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSL-VSDAEHV 219

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+ +  +D+V W+AM+  Y+      +A  +F +M++SG  P+   + +VL A   L ++
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSV 279

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
            +GK +     K + +    +  AL+DM+AKCGD+  A   F  +    ++  + +I+  
Sbjct: 280 VLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRY 339

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           A   +  +A  LF  ++ + V P++ +   +L AC++   +D G++
Sbjct: 340 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ 385



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGD-DIHVQNTLVHMYGSCEGGIELGR 66
           + F     L+ C   GD   G++VHG V++    G  D+   N L++MYG   G +   R
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKL-GPLASAR 116

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FD M ER+ VS+  ++  +A+ G    A  LFR+++  G   ++  + T+L     + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           A  +   V S   K   + +  + + LID ++ C  V  A  +F  +  +  V WT++++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA--CSHCGLVDKGREYFDSMKNDFG 244
             + +     A  +F +M  +G  P+  A   +L A  C    ++ KG  +  ++K    
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKG-IHGCAIKTLND 295

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
             P +   G ++DM  + G +K+A    + +P +
Sbjct: 296 TEPHVG--GALLDMYAKCGDIKDARLAFEMIPYD 327


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/502 (39%), Positives = 290/502 (57%), Gaps = 33/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+ F    V    A +    LG+ +H   +   +  D  V+++LV MY  C G  + 
Sbjct: 100 ALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC-GSPDD 158

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVC----- 109
           GRKVFD MS ++SV W+A++ GYA  G S +A+ LFR M           ISG+      
Sbjct: 159 GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGES 218

Query: 110 -----------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D   +  V+    DL A  +G+ +     +     ++ + NA
Sbjct: 219 VGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNA 278

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LIDM++KC D+  A ++F  +  R ++SWT+++ G A HGR  EA+AL++ M+ AG  P+
Sbjct: 279 LIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPN 338

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGL+ ACSH GLV KGR+ F+SMKN++GI P+++HY C +D+L RSG + EA E +
Sbjct: 339 EVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELM 398

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP E +   W  L+SAC    + ++   I+ +L+   P   S Y+LLS++YA   +W+
Sbjct: 399 TTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWD 458

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              K+R+ M    ++K PG + IE   E   F  G+      +EI   L+EM  +M+K G
Sbjct: 459 SVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRG 518

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS V+ D+ E +KE  L  HSE+LA+AF L+K+PPG+ IR+VKNLRVC DCH+  K
Sbjct: 519 YVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMK 578

Query: 453 FISKIYNREIVVRDRHRFHHFK 474
            IS+I +R+IVVRD  RFHHF+
Sbjct: 579 LISEITHRKIVVRDSSRFHHFE 600



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 40/294 (13%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLG 126
           +FDE   RD   +S+++   +       A+ + R M     + PD   + +V S    L 
Sbjct: 60  LFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLR 119

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD---------------------- 164
           +  +G+ + +       N    + ++L+DM+ KCG  D                      
Sbjct: 120 SRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVS 179

Query: 165 ---------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                    +AL+LFRSM GR + +WT++I+GL   G  + AV LF EM   GV  DD  
Sbjct: 180 GYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAF 239

Query: 216 FVGL-LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            + + +   +       GR+   S     G +  +     ++DM  +   +  A E  + 
Sbjct: 240 VLSIVIGGSADLAAFVLGRQLHGSTMR-LGFLSNMIVGNALIDMYSKCSDILSAREVFEG 298

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
           +    + I W T++      G  + A ++  R++  G +P +E  +V L  IYA
Sbjct: 299 ITFR-DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKP-NEVTFVGL--IYA 348


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 191/502 (38%), Positives = 284/502 (56%), Gaps = 36/502 (7%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+       L A   +G +++G+ +HG  +K     D  V   L+ MYG C    E+ R 
Sbjct: 155 PDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVR- 213

Query: 68  VFDEMSERDSVSWSAMIGGYARL-----------------------------------GL 92
           VFDE S  D  S +A+I G +R                                    G 
Sbjct: 214 VFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGK 273

Query: 93  STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
             +A++ FR+MQ  G  P+ +T+  VL A  ++ AL  G+    F  ++     V + +A
Sbjct: 274 DLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSA 333

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           L+DM+AKCG V  A  +F +M  R +VSW ++I G AM+G  + AV +F  ML+    PD
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V F  LL+AC+  GL ++GR YF  M N++G+ P++EHY CMV +L R+G++ EA++ I
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI 453

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP E +  IW +L+ +C   G + LAE   ++L   EP +  NYVLLS+IYA    W+
Sbjct: 454 SDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWD 513

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
           +  ++RE+M   G+KK  G + IE+ N+++  + GD SH     I E ++++  +M+K G
Sbjct: 514 RVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLG 573

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           +VP+T  VL D+ E++K+D L  HSEKLA+A  L+ T PGT +R++KNLR+C DCH A K
Sbjct: 574 FVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMK 633

Query: 453 FISKIYNREIVVRDRHRFHHFK 474
           FIS    REI VRD +RFHHF 
Sbjct: 634 FISSFEGREISVRDTNRFHHFS 655



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G  PN  T P VL A A +  L  G+S H   L+  F  D++V + LV MY  C G
Sbjct: 284 MQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKC-G 342

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  R +FD M  R+ VSW+AMIGGYA  G + +A+ +F  M      PD +T   +L+
Sbjct: 343 RVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLA 402

Query: 121 ACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           ACT  G  E G+ + +    +  V+  +     ++ +  + G +D+A  L   M      
Sbjct: 403 ACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDA 462

Query: 179 VSWTSVIAGLAMHG 192
             W S++    +HG
Sbjct: 463 YIWGSLLGSCRVHG 476



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 137/364 (37%), Gaps = 82/364 (22%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY------------ 55
           P+    P   K+C     L L +++H          D  V ++L+H Y            
Sbjct: 18  PDPHLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 56  --------------------GSCEGGIELGRKVFDEMS-----ERDSVSWSAMIGGYARL 90
                                +  G  E   ++ +EM      E + ++W+ ++ G  R 
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 91  GLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
           G + DA+     M   G+  PD   +   LSA  D+G + VG+ +  +  K        +
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 150 CNALIDMFAKCG-------------------------------DVDKALKLFRSMNGR-- 176
             ALIDM+ KCG                                V +AL+LF+    R  
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGV 254

Query: 177 --TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
              +VSWTS++A    +G+ LEAV  F EM   G  P+ V    +L A ++   +  GR 
Sbjct: 255 ELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRS 314

Query: 235 Y--FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
              F   K   G +  +     +VDM  + GRVK+A      M +  N + W  +I    
Sbjct: 315 AHCFALRK---GFLHDVYVSSALVDMYAKCGRVKDARIIFDTM-VSRNVVSWNAMIGGYA 370

Query: 293 ARGE 296
             GE
Sbjct: 371 MYGE 374


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 176/416 (42%), Positives = 264/416 (63%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +EL  ++F  M+ ++ V+W++MI GY     + D + +F+ M  S V P+ +++ +VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
             C++L AL +G+ +   + K  +++    C +LI M+ KCGD+D A KLF  M  + ++
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           +W ++I+G A HG G +A+ LF++M    + PD + FV ++ AC+H G VD G +YF SM
Sbjct: 363 TWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K +FGI  K  HY C++D+L R+GR+ EA   I++MP   +  I+ TL+ AC     L L
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDL 482

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
           AE   + L+  +P   + YV L++IYA   +W++  K+R++M +  + KIPG + IE+ +
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
             +EF   D+ H +   I++ L+E+  KMK AGYVP     L D+ EE KE  L  HSEK
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEK 602

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LAIAF L+KT PGTPIR+ KNLRVC DCH A KFIS I  REI+VRD  RFHHF++
Sbjct: 603 LAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+E  V PN  +   VL  C+ +  L LG+ +H  V K     D     +L+ MY  C G
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKC-G 344

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K+F EM  +D ++W+AMI GYA+ G    A+ LF +M+   + PD IT V V+ 
Sbjct: 345 DLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVIL 404

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC   G +++G ++ +S  ++  +         +ID+  + G +D+A+ L + M
Sbjct: 405 ACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 115/237 (48%), Gaps = 14/237 (5%)

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE--ITMVTV 118
           G++     F++M  +D  SW+ +I G+A+ G    A DLF       V P++  ++   +
Sbjct: 151 GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF------SVMPEKNGVSWSAM 204

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +S   + G LE  +     + K +  +SV +  A++  + K G V+ A ++F+ M  + +
Sbjct: 205 ISGYVEHGDLEAAE----ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           V+W S+IAG   + R  + + +F+ M+E+ V P+ ++   +L  CS+   +  GR+    
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQ 319

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           + +   +         ++ M C+ G +  A +   +MP   + I W  +IS     G
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQHG 375



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 122/284 (42%), Gaps = 56/284 (19%)

Query: 42  GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL-GLSTDAIDLF 100
            D + +  T+     +C+  +E  R VF++MS R +V+W+ M+ GY ++ G   +A +LF
Sbjct: 71  SDVVSLNKTIASFVRACD--LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160
            ++      PD ++                                    N ++  + + 
Sbjct: 129 DKIPE----PDSVSY-----------------------------------NIMLVCYLRS 149

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
             V  AL  F  M  + I SW ++I+G A +G+  +A  LF  M E     + V++  ++
Sbjct: 150 YGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMI 205

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
           S     G ++   E + ++     ++      G M     + G+V+ A    Q+M ++ N
Sbjct: 206 SGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM-----KFGKVELAERIFQRMAVK-N 259

Query: 281 PIIWRTLISA----CCARGELKLAESITKRLIGNEPMHESNYVL 320
            + W ++I+     C A   LK+ +++ +  +   P+  S+ +L
Sbjct: 260 LVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 289/474 (60%), Gaps = 1/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P+ FT   +L AC+ +  L LGK VHG +++     D+ V  +++ +Y  C G
Sbjct: 471 MKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC-G 529

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +FD M +   VSW+ +I G+ + G    A+ LFRQM + G+ P  I+M+TV  
Sbjct: 530 ELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+ L +L +G+   ++  K ++  +  +  ++IDM+AK G + ++ K+F  +  ++  S
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G  MHGR  EA+ LFEEM   G  PDD+ F+G+L+AC+H GL+ +G  Y D MK
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK 709

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + FG+ P ++HY C++DML R+G++  A     +M  E +  IW +L+S C     L++ 
Sbjct: 710 SSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMG 769

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E +  +L   EP    NYVLLS++YA L +W+   ++R+ M +  ++K  G + IEL+ +
Sbjct: 770 EKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGK 829

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV G++     +EI  +   +  K+ K GY P TS V  D++EE+K + L  HSEKL
Sbjct: 830 VFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKL 889

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           AI + L+KT  GT +R+ KNLR+C DCH+A K ISK+  REIVVRD  RFHHF 
Sbjct: 890 AITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFN 943



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 15/218 (6%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+P V+KACAGI D+ +G +VHG V+K    +D+ V N LV  YG+  G +    K
Sbjct: 185 PDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGT-HGFVSDALK 243

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +FD M ER+ VSW++MI  ++  G                  PD  T+VTVL  C     
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVCARERE 291

Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
           + VGK V  +  K  +++ + + NAL+DM++K G +  +  +F+  N + +VSW +++ G
Sbjct: 292 IGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGG 351

Query: 188 LAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSAC 223
            +  G       L  +ML     V  D+V  +  +  C
Sbjct: 352 FSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 139/273 (50%), Gaps = 7/273 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H   LK +F  D  + N  V  Y  C G +   ++VF  +  +   SW+A+IGGYA+
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKC-GSLSYAQRVFHGIRSKTLNSWNALIGGYAQ 457

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                 ++D   QM+ SG+ PD  T+ ++LSAC+ L +L +GK V  FI +  + R + +
Sbjct: 458 SSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 517

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             +++ ++  CG++     LF +M   ++VSW +VI G   +G    A+ LF +M+  G+
Sbjct: 518 YLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGI 577

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKE 267
            P  ++ + +  ACS    +  GRE +  ++K+   ++       C ++DM  ++G + +
Sbjct: 578 QPCGISMMTVFGACSLLPSLRLGREAHAYALKH---LLEDNAFIACSIIDMYAKNGAITQ 634

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + +    +  E +   W  +I      G  K A
Sbjct: 635 SSKVFNGLK-EKSAASWNAMIMGYGMHGRAKEA 666



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 3/229 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   VL  CA   ++ +GK VHG  +K     ++ V N L+ MY S  G I   + 
Sbjct: 274 PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMY-SKWGCIIDSQM 332

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDL 125
           +F   + ++ VSW+ M+GG++  G      DL RQM      V  DE+T++  +  C D 
Sbjct: 333 IFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDE 392

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L   K +  +  KQ       L NA +  +AKCG +  A ++F  +  +T+ SW ++I
Sbjct: 393 SVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALI 452

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            G A       ++    +M  +G+ PD+     LLSACS    +  G+E
Sbjct: 453 GGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKE 501



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 18/313 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
            +L+A     D+ +G+ +H  V    +   D  +   ++ MY  C G  +  R  FD + 
Sbjct: 89  LLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMC-GSPDDSRSAFDALR 147

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
            ++   W+A+I  Y+R  L  + +++F +M   + + PD  T   V+ AC  +  + +G 
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V   + K  +   + + NAL+  +   G V  ALKLF  M  R +VSW S+I   + +G
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
                        +    PD    V +L  C+    +  G+           +  ++   
Sbjct: 268 D------------DGAFMPDVATVVTVLPVCAREREIGVGKG-VHGWAVKLSLDKELVVN 314

Query: 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-GNE 311
             ++DM  + G + ++ + I K+    N + W T++    A G++     + ++++ G+E
Sbjct: 315 NALMDMYSKWGCIIDS-QMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSE 373

Query: 312 PMHESNYVLLSHI 324
            +      +L+ +
Sbjct: 374 DVKADEVTILNAV 386


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 192/491 (39%), Positives = 284/491 (57%), Gaps = 19/491 (3%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G +P++ T   VL ACA        +++HG V+K     +  VQN L+ MY    G +
Sbjct: 380 EAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARL-GEM 438

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC------------- 109
           ++ R++F  +  RD VSW+ +I G    G + +A  L  +MQ+                 
Sbjct: 439 DVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAH 498

Query: 110 ---PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKA 166
              P+ IT++T+L  C  L A   GK +  +  +  +   + + +AL+DM+AKCG +  +
Sbjct: 499 RCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAAS 558

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH 225
             +F  +  R +++W  +I    MHG G EAVALF+EM   G   P++V F+  L+ACSH
Sbjct: 559 RAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSH 618

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIW 284
            GLVD+G E F  M+ D G+ P  + + C+VD+L R+GR+ EA+  I  M P E     W
Sbjct: 619 SGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAW 678

Query: 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
            +L+ AC     ++L E   +RL   EP   S+YVLL +IY+    W+K   +R  M ++
Sbjct: 679 SSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQ 738

Query: 345 GMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI 404
           G+ K PG + IELD  I+ F+ G+ SH  S E++  +D +  +M++ GY P TS VL D+
Sbjct: 739 GVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDV 798

Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
           +E++K   L  HSEKLAIAF LL+ PPG  IR+ KNLRVCNDCH A KF+SK+  R+IV+
Sbjct: 799 DEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVL 858

Query: 465 RDRHRFHHFKD 475
           RD  RFHHF+D
Sbjct: 859 RDVRRFHHFRD 869



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 33/315 (10%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCE 59
           M+  GV P+  T+   L AC+ +  L LG+ +H  VLK      +  V + LV MY   E
Sbjct: 273 MVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNE 332

Query: 60  GGIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-SGVCPDEITMV 116
             +   R+VFD + E  R    W+AMI GYA+ G+  +A++LF +M+  +G  P E TM 
Sbjct: 333 K-VASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMS 391

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            VL AC         + +  ++ K+ +  +  + NAL+DM+A+ G++D A ++F  ++ R
Sbjct: 392 GVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPR 451

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEM------------LEAGVP----PDDVAFVGLL 220
            +VSW ++I G  + G   EA  L  EM             E G      P+++  + LL
Sbjct: 452 DVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLL 511

Query: 221 SACSHCGLVDKGREYFD-----SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
             C+      +G+E        ++++D  +         +VDM  + G +  +     ++
Sbjct: 512 PGCAALAAPARGKEIHGYAVRHALESDIAV------GSALVDMYAKCGCLAASRAVFDRL 565

Query: 276 PIEANPIIWRTLISA 290
           P   N I W  LI A
Sbjct: 566 P-RRNVITWNVLIMA 579



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 23/300 (7%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIH-----VQNTLVHMYGSCEGGIE 63
           + F  P  +K+ A + D    +S+H A L+      +H     V N L+  Y  C     
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRAL---LHRPSPAVGNALLTAYARCGDLDA 118

Query: 64  LGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSA 121
                    +E RD+VS++++I           A+D  R M   G       T+V+VL A
Sbjct: 119 ALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLA 178

Query: 122 CTDL---GALEVGKWVESFIEKQMV---NRSVGLCNALIDMFAKCGDVDKALKLFR---- 171
           C+ L       +G+   +F  K+      R     NAL+ M+A+ G VD A  LFR    
Sbjct: 179 CSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAA 238

Query: 172 --SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
             S  G  +V+W ++I+ L   GR  EAV +  +M+  GV PD V F   L ACS   ++
Sbjct: 239 AFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEML 298

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLI 288
             GRE    +  D  +         +VDM   + +V  A      +P  +  + +W  +I
Sbjct: 299 ALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMI 358


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 259/415 (62%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G +   R +FD M +RDS+SWSAMI GY++ G S +A+  F +MQ      +  +    L
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           S C+++ ALE+G+ +   + K        + NAL+ M+ KCG +D+A   F+ +  + +V
Sbjct: 188 STCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVV 247

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW ++I G A HG G EA+ +FE M   G+ PDD   V +L+ACSH GLVD+G EYF SM
Sbjct: 248 SWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSM 307

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+GI  K+ HY CMVD+L R+G+++EA   ++ MP E +   W  L+ A    G  +L
Sbjct: 308 NRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 367

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E   + +   EP +   Y+LLS +YA   RW    K+R  M  +G+KK+PG + +E+ N
Sbjct: 368 GEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQN 427

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +I+ F  GD SH  + +IY  L+EM  K+K+ GY+ +T+ V  D+ EE+K   L  HSEK
Sbjct: 428 KIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEK 487

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+A+ +L  P G PIR++KNLRVC DCH+A K+ISKI  R I++RD HRFH+F+
Sbjct: 488 LAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFE 542



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 15/234 (6%)

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           ++  R +F+ M ERD VSW+AM+ GYA+ G   +A ++F +M +     + I+   +L+A
Sbjct: 42  LKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLK----NGISWNGLLAA 97

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
               G +E  K      E +M + ++   N L+  F     V K   LF +M  R  +SW
Sbjct: 98  YVQNGRIEDAK---RLFESKM-DWTLVSWNCLMGGF-----VRKRRNLFDNMPQRDSISW 148

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
           +++IAG + +G   EA+  F EM       +  +F   LS CS+   ++ GR+    +  
Sbjct: 149 SAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVK 208

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
             G          ++ M C+ G + EA +  Q++ +E + + W T+I      G
Sbjct: 209 A-GYQTGWYVGNALLAMYCKCGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHG 260


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 196/483 (40%), Positives = 289/483 (59%), Gaps = 10/483 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKS-----VHGAVLKFQFGDDIHVQNTLVHMY 55
           M   GV  + ++Y   LKAC  +   +   S     VH   ++  +    HV  TL+  Y
Sbjct: 165 MGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCY 224

Query: 56  GSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEI 113
               G +     VF  M ER+ VSWSAMIG YA+     DAI+LF+ M  S   + P+ I
Sbjct: 225 AKL-GIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSI 283

Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           T+V+VL+AC  + AL  GK + ++I ++  +  V + NAL+ M+ +CG ++    +F+ +
Sbjct: 284 TIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWI 343

Query: 174 -NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            + R +VSW S+I+G  MHG G EAV +FEEM+  G  P  + F+ +L ACSH GLV++G
Sbjct: 344 GHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEG 403

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
           +  F+SM  ++G+ P+ EHY CMVD+L R+G++ EA E I+ M IE +P +W  L+ AC 
Sbjct: 404 KMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACR 462

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
             G ++ AE     L   EP +  NYVLL+ IYA+     +   ++E++++  ++K+ G 
Sbjct: 463 IHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGC 522

Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
           + IE+  +++ F   D  +   +++  ++ E   +MK  GYVP T  VL DI  E+KE  
Sbjct: 523 SWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERI 582

Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
           L  HSEKLA+AF L+ T  G  IRI KNLR+C DCHS TKFISK   REIVVRD +RFHH
Sbjct: 583 LIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHH 642

Query: 473 FKD 475
           F+D
Sbjct: 643 FRD 645



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 25/264 (9%)

Query: 41  FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF 100
           F  D  +   L+  Y +  G +   R+VFDE   ++   W+A++   A      +A+   
Sbjct: 104 FRSDPFLSTRLIEAYAAL-GALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARL 162

Query: 101 RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE-SFIEKQMVNRSVGL----CNALID 155
             M   GV  D  +    L AC  + A           +    + R   L       LID
Sbjct: 163 ADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLID 222

Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML--EAGVPPDD 213
            +AK G V  A  +F +M  R +VSW+++I   A + R  +A+ LF++M+  +A + P+ 
Sbjct: 223 CYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNS 282

Query: 214 VAFVGLLSACSHCGLVDKG--------REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
           +  V +L+AC+    +  G        R  FDS+         +     ++ M  R G +
Sbjct: 283 ITIVSVLNACAGVNALSHGKLLHAYILRRGFDSL---------VSVLNALMAMYMRCGCL 333

Query: 266 KEAHEFIQKMPIEANPIIWRTLIS 289
           +      + +    + + W +LIS
Sbjct: 334 EVGRHIFKWIGHRRDVVSWNSLIS 357



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L   LI+ +A  G +  A ++F     + I  W +++  LA+   G EA+A   +M   G
Sbjct: 110 LSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLG 169

Query: 209 VPPDDVAFVGLLSAC-----SHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRS 262
           VP D  ++   L AC     SH     + RE +  +++  + +   +     ++D   + 
Sbjct: 170 VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVA--TTLIDCYAKL 227

Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           G V+ A      MP E N + W  +I  C A+ E
Sbjct: 228 GIVRYAESVFAAMP-ERNVVSWSAMI-GCYAKNE 259


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/506 (38%), Positives = 293/506 (57%), Gaps = 36/506 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV PN  T   +L ACA + DL  GK +HG  ++     ++ V + LV +Y  C   +  
Sbjct: 174 GVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLS-VRE 232

Query: 65  GRKVFDEMSERDSVSWS-----------------------------------AMIGGYAR 89
            R VFD M  RD VSW+                                   A+IGG   
Sbjct: 233 ARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCME 292

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
            G S +A+++FR+MQ  G  P+EIT+ ++L AC+    L +GK +  ++ +      +  
Sbjct: 293 NGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTS 352

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             AL+ M+AKCGD++ +  +F  M  + +V+W ++I   AMHG G EA+ LF++ML + V
Sbjct: 353 TTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRV 412

Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
            P+ V F G+LS CSH  LV++G + F+SM  D  + P   HY C+VD+  R+GR+ EA+
Sbjct: 413 QPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAY 472

Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
           +FIQ MP+E     W  L++AC     ++LA+   K+L   EP +  NYV L +I     
Sbjct: 473 KFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAK 532

Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
            W + +++R +M +RG+ K PG + +++ N+++ FV GDKS+ +S +IY  LDE+  KMK
Sbjct: 533 MWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 592

Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
            AGY P T  VL DI++E+K ++L  HSEKLA+AF +L     + IR+ KNLR+C DCH+
Sbjct: 593 MAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHN 652

Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
           A K++SK+    IVVRD  RFHHFK+
Sbjct: 653 AIKYMSKVVGVIIVVRDSLRFHHFKN 678



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 1/238 (0%)

Query: 3   EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
           E G+ P+   +    KACA  GD    K VH    +     D+ V N L+H YG C+  +
Sbjct: 71  ERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC-V 129

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
           E  R+VFD++  RD VSW+++   Y + G     +D+FR+M  SGV P+ +T+ ++L AC
Sbjct: 130 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +L  L+ GK +  F  +  +  ++ +C+AL+ ++AKC  V +A  +F  M  R +VSW 
Sbjct: 190 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 249

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            V+     +    +  +LF +M   GV  D+  +  ++  C   G  ++  E F  M+
Sbjct: 250 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ 307



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G  PN+ T   +L AC+   +L +GK +H  V +     D+     L++MY  C G
Sbjct: 306 MQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC-G 364

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            + L R VFD M  +D V+W+ MI   A  G   +A+ LF +M +S V P+ +T   VLS
Sbjct: 365 DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 424

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TI 178
            C+    +E G  +  S     +V       + ++D++++ G +++A K  + M    T 
Sbjct: 425 GCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTA 484

Query: 179 VSWTSVIAGLAMHGR----GLEAVALFEEMLEAGVPPDDVAFVGLL 220
            +W +++A   ++       + A  LFE  +E   P + V+   +L
Sbjct: 485 SAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVSLFNIL 528



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 4/232 (1%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G     R++FD + + D  + S +I      GLS +AI ++  +Q  G+ PD    +   
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 120 SACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
            AC   G AL V K V     +  V   V + NALI  + KC  V+ A ++F  +  R +
Sbjct: 86  KACAVSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 144

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VSWTS+ +     G   + + +F EM  +GV P+ +    +L AC+    +  G+E    
Sbjct: 145 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-IHG 203

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                G++  +     +V +  +   V+EA      MP   + + W  +++A
Sbjct: 204 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTA 254



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 117/315 (37%), Gaps = 76/315 (24%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LI +    GD ++A +LF ++      + +++I+ L  HG   EA+ ++  + E G+ PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 213 DVAFVGLLSACS-----------------------------------HCGLVDKGREYFD 237
              F+    AC+                                    C  V+  R  FD
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCAR 294
            +     ++  +  +  +     + G  ++  +  ++M    ++ NP+   +++ AC   
Sbjct: 138 DL-----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 192

Query: 295 GELKLAESITKRLIGNEPMHESNYVL--LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
            +LK  + I    +    M  + +V   L  +YAK L   +   + ++M  R +    G 
Sbjct: 193 KDLKSGKEIHGFAV-RHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 251

Query: 353 TLIELDNEIYE-----------------------FVCGDKSHHQSKEIYEMLDEMGRKMK 389
                 N+ YE                        + G   + +S+E  EM     RKM+
Sbjct: 252 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF----RKMQ 307

Query: 390 KAGYVP---TTSEVL 401
           K G+ P   T S +L
Sbjct: 308 KMGFKPNEITISSIL 322


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 293/472 (62%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L AC+ +  L LGK VHG +++     D+ V  +++ +Y  C G +  
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC-GELCT 299

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD M ++  VSW+ +I GY + G    A+ +FRQM + G+    I+M+ V  AC+ 
Sbjct: 300 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 359

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L +G+   ++  K ++     +  +LIDM+AK G + ++ K+F  +  ++  SW ++
Sbjct: 360 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 419

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G  +HG   EA+ LFEEM   G  PDD+ F+G+L+AC+H GL+ +G  Y D MK+ FG
Sbjct: 420 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFG 479

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESI 303
           + P ++HY C++DML R+G++ +A   + ++M  EA+  IW++L+S+C     L++ E +
Sbjct: 480 LKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 539

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             +L   EP    NYVLLS++YA L +WE   K+R+ M++  ++K  G + IEL+ +++ 
Sbjct: 540 AAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFS 599

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV G++     +EI  +   +  K+ K GY P T  V  D++EE+K + L  HSEKLA+ 
Sbjct: 600 FVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALT 659

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + L+KT  GT IR+ KNLR+C DCH+A K ISK+  REIVVRD  RFHHFK+
Sbjct: 660 YGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 711



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 137/261 (52%), Gaps = 7/261 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H   LK +F  +  V N  V  Y  C G +   ++VF  +  +   SW+A+IGG+A+
Sbjct: 165 KELHCYSLKQEFVYNELVANAFVASYAKC-GSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 223

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                 ++D   QM+ISG+ PD  T+ ++LSAC+ L +L +GK V  FI +  + R + +
Sbjct: 224 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 283

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             +++ ++  CG++     LF +M  +++VSW +VI G   +G    A+ +F +M+  G+
Sbjct: 284 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 343

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKE 267
               ++ + +  ACS    +  GRE +  ++K+   ++       C ++DM  ++G + +
Sbjct: 344 QLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQ 400

Query: 268 AHEFIQKMPIEANPIIWRTLI 288
           + +    +  E +   W  +I
Sbjct: 401 SSKVFNGLK-EKSTASWNAMI 420



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   VL  CA   ++ LGK VHG  +K +   ++ + N L+ MY  C G I   + 
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC-GCITNAQM 98

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDL 125
           +F   + ++ VSW+ M+GG++  G +    D+ RQM   G  V  DE+T++  +  C   
Sbjct: 99  IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE 158

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L   K +  +  KQ    +  + NA +  +AKCG +  A ++F  +  +T+ SW ++I
Sbjct: 159 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 218

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            G A       ++    +M  +G+ PD      LLSACS    +  G+E
Sbjct: 219 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 267



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 12/247 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+ YG+     +   V  AC+ +  L LG+  H   LK    DD  +  +L+ MY    G
Sbjct: 338 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK-NG 396

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    KVF+ + E+ + SW+AMI GY   GL+ +AI LF +MQ +G  PD++T + VL+
Sbjct: 397 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 456

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTI 178
           AC   G +  G ++++       +  ++     +IDM  + G +DKAL++    M+    
Sbjct: 457 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 516

Query: 179 VS-WTSVIAGLAMHGRGLE-----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           V  W S+++   +H + LE     A  LFE  LE   P + V    L +       V K 
Sbjct: 517 VGIWKSLLSSCRIH-QNLEMGEKVAAKLFE--LEPEKPENYVLLSNLYAGLGKWEDVRKV 573

Query: 233 REYFDSM 239
           R+  + M
Sbjct: 574 RQRMNEM 580



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 75  RDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----ISGVCPDEITMVTVLSACTDLGALEV 130
           R+ VSW++MI  ++  G S ++  L  +M          PD  T+VTVL  C     + +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK V  +  K  +++ + L NAL+DM++KCG +  A  +F+  N + +VSW +++ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 191 HGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
            G       +  +ML  G  V  D+V  +  +  C H   +   +E +  S+K +F
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 176


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 293/472 (62%), Gaps = 2/472 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ P+ FT   +L AC+ +  L LGK VHG +++     D+ V  +++ +Y  C G +  
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC-GELCT 549

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            + +FD M ++  VSW+ +I GY + G    A+ +FRQM + G+    I+M+ V  AC+ 
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 609

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L +L +G+   ++  K ++     +  +LIDM+AK G + ++ K+F  +  ++  SW ++
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 669

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           I G  +HG   EA+ LFEEM   G  PDD+ F+G+L+AC+H GL+ +G  Y D MK+ FG
Sbjct: 670 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFG 729

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESI 303
           + P ++HY C++DML R+G++ +A   + ++M  EA+  IW++L+S+C     L++ E +
Sbjct: 730 LKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 789

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
             +L   EP    NYVLLS++YA L +WE   K+R+ M++  ++K  G + IEL+ +++ 
Sbjct: 790 AAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFS 849

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           FV G++     +EI  +   +  K+ K GY P T  V  D++EE+K + L  HSEKLA+ 
Sbjct: 850 FVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALT 909

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           + L+KT  GT IR+ KNLR+C DCH+A K ISK+  REIVVRD  RFHHFK+
Sbjct: 910 YGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 961



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 8/243 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTYP V+KACAG+ D+ +G +VHG V+K    +D+ V N LV  YG+  G +    +
Sbjct: 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGT-HGFVTDALQ 243

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----ISGVCPDEITMVTVLSACT 123
           +FD M ER+ VSW++MI  ++  G S ++  L  +M          PD  T+VTVL  C 
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
               + +GK V  +  K  +++ + L NAL+DM++KCG +  A  +F+  N + +VSW +
Sbjct: 304 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 363

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMK 240
           ++ G +  G       +  +ML  G  V  D+V  +  +  C H   +   +E +  S+K
Sbjct: 364 MVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLK 423

Query: 241 NDF 243
            +F
Sbjct: 424 QEF 426



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 137/261 (52%), Gaps = 7/261 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H   LK +F  +  V N  V  Y  C G +   ++VF  +  +   SW+A+IGG+A+
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKC-GSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                 ++D   QM+ISG+ PD  T+ ++LSAC+ L +L +GK V  FI +  + R + +
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 533

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
             +++ ++  CG++     LF +M  +++VSW +VI G   +G    A+ +F +M+  G+
Sbjct: 534 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593

Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKE 267
               ++ + +  ACS    +  GRE +  ++K+   ++       C ++DM  ++G + +
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQ 650

Query: 268 AHEFIQKMPIEANPIIWRTLI 288
           + +    +  E +   W  +I
Sbjct: 651 SSKVFNGLK-EKSTASWNAMI 670



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   VL  CA   ++ LGK VHG  +K +   ++ + N L+ MY  C G I   + 
Sbjct: 290 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC-GCITNAQM 348

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDL 125
           +F   + ++ VSW+ M+GG++  G +    D+ RQM   G  V  DE+T++  +  C   
Sbjct: 349 IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE 408

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L   K +  +  KQ    +  + NA +  +AKCG +  A ++F  +  +T+ SW ++I
Sbjct: 409 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            G A       ++    +M  +G+ PD      LLSACS    +  G+E
Sbjct: 469 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 12/247 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+ YG+     +   V  AC+ +  L LG+  H   LK    DD  +  +L+ MY    G
Sbjct: 588 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK-NG 646

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    KVF+ + E+ + SW+AMI GY   GL+ +AI LF +MQ +G  PD++T + VL+
Sbjct: 647 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 706

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTI 178
           AC   G +  G ++++       +  ++     +IDM  + G +DKAL++    M+    
Sbjct: 707 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 766

Query: 179 VS-WTSVIAGLAMHGRGLE-----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           V  W S+++   +H + LE     A  LFE  LE   P + V    L +       V K 
Sbjct: 767 VGIWKSLLSSCRIH-QNLEMGEKVAAKLFE--LEPEKPENYVLLSNLYAGLGKWEDVRKV 823

Query: 233 REYFDSM 239
           R+  + M
Sbjct: 824 RQRMNEM 830



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 16/320 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
            +L+A     D+ +G+ +H  V    +  +D  +   ++ MY  C G  +  R VFD + 
Sbjct: 89  LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMC-GSPDDSRFVFDALR 147

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
            ++   W+A+I  Y+R  L  + ++ F +M   + + PD  T   V+ AC  +  + +G 
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V   + K  +   V + NAL+  +   G V  AL+LF  M  R +VSW S+I   + +G
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 193 RGLEAVALFEEMLE----AGVPPDDVAFVGLLSACSH---CGLVDKGREYFDSMKNDFGI 245
              E+  L  EM+E        PD    V +L  C+     GL      +   ++ D  +
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 327

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +        ++DM  + G +  A + I KM    N + W T++    A G+      + +
Sbjct: 328 VLN----NALMDMYSKCGCITNA-QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLR 382

Query: 306 RLI-GNEPMHESNYVLLSHI 324
           +++ G E +      +L+ +
Sbjct: 383 QMLAGGEDVKADEVTILNAV 402


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 189/483 (39%), Positives = 297/483 (61%), Gaps = 13/483 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFG-DDIHVQNTLVHMYGS 57
           M E+GV P + T+  VL AC  +  L   + +H  +++   QF   D+ VQN L++MY  
Sbjct: 233 MAEHGVRPCRATFVGVLGACNDVTSL---EKIHARIVETGLQFDVRDVGVQNALLNMYAK 289

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           C G +E+ R +F +M  RD VS + MI  +A+ GL  ++I +FR+M + G+  D+ T  +
Sbjct: 290 C-GSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFAS 348

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN-----ALIDMFAKCGDVDKALKLFRS 172
           V++AC+  GALE GK +   + + ++ R   L N     AL+ M+ KCG +++A  +F++
Sbjct: 349 VITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKA 408

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
           M  +  VSW +++A  A  G+G EA A        GV  D  +F+ +L ACSH G+++  
Sbjct: 409 MTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVA 468

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
            ++F  M +DF ++P  E+Y CMVD+L RSGR+ +A E +  MP   + I WRTL+  C 
Sbjct: 469 YDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCR 528

Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK-IPG 351
            +G L+ A S  ++    EP + + Y LLS +Y+   + ++  ++R  M +RG++K +PG
Sbjct: 529 VQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPG 588

Query: 352 STLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKED 411
            ++IE+   ++EFV GD SH Q  +I   LD +  ++K+AG+VP+T  V+ D+  EDKE+
Sbjct: 589 RSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEE 648

Query: 412 ALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFH 471
            L  HSEKLA+AF L+ T  G P+ ++KNLRVC+DCH A K ISK+ +R I VRD +RFH
Sbjct: 649 ILALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFH 708

Query: 472 HFK 474
            F+
Sbjct: 709 RFQ 711



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 14/300 (4%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG--DDIHVQNTLVHMYGSCEGGIE 63
           V P   T+   L AC+ +GDL  G+ +H A +K   G    + +   +  MY  C G + 
Sbjct: 135 VPPTAMTFATALSACSSLGDLQRGREIH-ARIKASRGIRPSVILDTAIFSMYAKC-GDLS 192

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSAC 122
             + VFD +  ++ VSW+A+I  YA+ G S   A+DLF +M   GV P   T V VL AC
Sbjct: 193 TAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGAC 252

Query: 123 TDLGALEV--GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            D+ +LE    + VE+ +  Q   R VG+ NAL++M+AKCG ++ A  +FR M  R  VS
Sbjct: 253 NDVTSLEKIHARIVETGL--QFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVS 310

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG----REYF 236
              +IA  A  G G E++ +F EM   G+P DD  F  +++ACS CG ++ G    +   
Sbjct: 311 MNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVV 370

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           + +      +P +     +V M  + G +++A    + M  + N + W  +++AC  +G+
Sbjct: 371 EPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTK-NSVSWNAMLAACAHQGQ 429



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 157/342 (45%), Gaps = 54/342 (15%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           ++   +++C    D N    +H  + +   G   ++ N LV M     G +   R +FD 
Sbjct: 46  SFAAAIRSCK---DSNSVSIIHQKITRAGLGSSAYLNNLLVLMLAK-HGSLCEARSIFDA 101

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           +  ++  SW+ +I  YA  G  + A+ LF +M +    P  +T  T LSAC+ LG L+ G
Sbjct: 102 IQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVP---PTAMTFATALSACSSLGDLQRG 158

Query: 132 KWVESFIE-KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           + + + I+  + +  SV L  A+  M+AKCGD+  A  +F  +  + +VSW ++IA  A 
Sbjct: 159 REIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQ 218

Query: 191 HGRG-LEAVALFEEMLEAGVPPDDVAFVGLLSAC-------------------------- 223
            G    +A+ LFE+M E GV P    FVG+L AC                          
Sbjct: 219 SGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRDVG 278

Query: 224 ---------SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
                    + CG ++  R+ F  M+    +   +     M+    + G  KE+ +  ++
Sbjct: 279 VQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNV-----MIATFAQQGLGKESIQVFRE 333

Query: 275 MPIEANP---IIWRTLISACCARGELKLAESITKRLIGNEPM 313
           M +E  P     + ++I+AC   G L+  + I KR++  EP+
Sbjct: 334 MDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVV--EPV 373



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 73/168 (43%), Gaps = 11/168 (6%)

Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
           G + + R  FD++++       I  +  ++      G    A     KM +    + + T
Sbjct: 90  GSLCEARSIFDAIQHK-----NIFSWNIIISAYAHRGHPSTALHLFAKMDVPPTAMTFAT 144

Query: 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
            +SAC + G+L+    I  R+  +  +  S  +L + I++   +    +  + V D+   
Sbjct: 145 ALSACSSLGDLQRGREIHARIKASRGIRPS-VILDTAIFSMYAKCGDLSTAKSVFDR--- 200

Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
             IP   ++  +  I  +     SHHQ+ +++E + E G +  +A +V
Sbjct: 201 --IPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFV 246


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 291/470 (61%), Gaps = 2/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G SP+++T   V    AG+  +++G+ +HG  +K+    D+ V ++L HMY    G ++ 
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR-NGKLQD 229

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G  V   M  R+ V+W+ +I G A+ G     + L++ M+ISG  P++IT VTVLS+C+D
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ + +   K   +  V + ++LI M++KCG +  A K F        V W+S+
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 349

Query: 185 IAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I+    HG+G EA+ LF  M E   +  ++VAF+ LL ACSH GL DKG E FD M   +
Sbjct: 350 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 409

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G  P ++HY C+VD+L R+G + +A   I+ MPI+ + +IW+TL+SAC      ++A+ +
Sbjct: 410 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 469

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            K ++  +P   + YVLL++++A   RW   +++R+ M  + +KK  G +  E   E+++
Sbjct: 470 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 529

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD+S  +SKEIY  L E+  +MK  GY P T+ VL D++EE+KE  L +HSEKLA+A
Sbjct: 530 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 589

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           FAL+  P G PIRI+KNLRVC+DCH A K+IS I NREI +RD  RFHHF
Sbjct: 590 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHF 639



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 157/323 (48%), Gaps = 9/323 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G S +KF    ++   + +GD     +V+G + K  +       N L++ Y    G +  
Sbjct: 74  GFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSS----NILINGYVRA-GDLVN 128

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
            RKVFDEM +R   +W+AMI G  +   + + + LFR+M   G  PDE T+ +V S    
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 188

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L ++ +G+ +  +  K  +   + + ++L  M+ + G +     + RSM  R +V+W ++
Sbjct: 189 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 248

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
           I G A +G     + L++ M  +G  P+ + FV +LS+CS   +  +G++ + +++K   
Sbjct: 249 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK--I 306

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G    +     ++ M  + G + +A +   +   E + ++W ++ISA    G+   A  +
Sbjct: 307 GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIEL 365

Query: 304 TKRLIGNEPMHESNYVLLSHIYA 326
              +     M  +    L+ +YA
Sbjct: 366 FNTMAEQTNMEINEVAFLNLLYA 388



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 33/208 (15%)

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL----------- 167
           + +CT   +L  GK +   +     +    +CN L+ M++K GD   A+           
Sbjct: 51  IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110

Query: 168 --------------------KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                               K+F  M  R + +W ++IAGL       E ++LF EM   
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G  PD+     + S  +    V  G++        +G+   +     +  M  R+G++++
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
               I+ MP+  N + W TLI      G
Sbjct: 230 GEIVIRSMPVR-NLVAWNTLIMGNAQNG 256


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 291/470 (61%), Gaps = 2/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G SP+++T   V    AG+  +++G+ +HG  +K+    D+ V ++L HMY    G ++ 
Sbjct: 84  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR-NGKLQD 142

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G  V   M  R+ V+W+ +I G A+ G     + L++ M+ISG  P++IT VTVLS+C+D
Sbjct: 143 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 202

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ + +   K   +  V + ++LI M++KCG +  A K F        V W+S+
Sbjct: 203 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 262

Query: 185 IAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I+    HG+G EA+ LF  M E   +  ++VAF+ LL ACSH GL DKG E FD M   +
Sbjct: 263 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 322

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G  P ++HY C+VD+L R+G + +A   I+ MPI+ + +IW+TL+SAC      ++A+ +
Sbjct: 323 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 382

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            K ++  +P   + YVLL++++A   RW   +++R+ M  + +KK  G +  E   E+++
Sbjct: 383 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 442

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD+S  +SKEIY  L E+  +MK  GY P T+ VL D++EE+KE  L +HSEKLA+A
Sbjct: 443 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 502

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           FAL+  P G PIRI+KNLRVC+DCH A K+IS I NREI +RD  RFHHF
Sbjct: 503 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHF 552



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 149/305 (48%), Gaps = 9/305 (2%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +GD     +V+G + K  +       N L++ Y    G +   RKVFDEM +R   +W+A
Sbjct: 5   LGDFPSAVAVYGRMRKKNYMS----SNILINGYVRA-GDLVNARKVFDEMPDRKLTTWNA 59

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI G  +   + + + LFR+M   G  PDE T+ +V S    L ++ +G+ +  +  K  
Sbjct: 60  MIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYG 119

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +   + + ++L  M+ + G +     + RSM  R +V+W ++I G A +G     + L++
Sbjct: 120 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK 179

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            M  +G  P+ + FV +LS+CS   +  +G++ + +++K   G    +     ++ M  +
Sbjct: 180 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK--IGASSVVAVVSSLISMYSK 237

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
            G + +A +   +   E + ++W ++ISA    G+   A  +   +     M  +    L
Sbjct: 238 CGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFL 296

Query: 322 SHIYA 326
           + +YA
Sbjct: 297 NLLYA 301


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/502 (39%), Positives = 290/502 (57%), Gaps = 33/502 (6%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            + P+ F    V    A +    LG+ +H   +   +  D  V+++LV MY  C G  + 
Sbjct: 182 ALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC-GSPDD 240

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVC----- 109
           GRKVFD MS ++SV W+A++ GYA  G S +A+ LFR M           ISG+      
Sbjct: 241 GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGES 300

Query: 110 -----------------PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
                             D   +  V+    DL A  +G+ +     +     ++ + NA
Sbjct: 301 VGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNA 360

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           LIDM++KC D+  A ++F  +  R ++SWT+++ G A HGR  EA+AL++ M+ AG  P+
Sbjct: 361 LIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPN 420

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
           +V FVGL+ ACSH GLV KGR+ F+SMKN++GI P+++HY C +D+L RSG + EA E +
Sbjct: 421 EVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELM 480

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332
             MP E +   W  L+SAC    + ++   I+ +L+   P   S Y+LLS++YA   +W+
Sbjct: 481 TTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWD 540

Query: 333 KKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392
              K+R+ M    ++K PG + IE   E   F  G+      +EI   L+EM  +M+K G
Sbjct: 541 SVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRG 600

Query: 393 YVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATK 452
           YVP TS V+ D+ E +KE  L  HSE+LA+AF L+K+PPG+ IR+VKNLRVC DCH+  K
Sbjct: 601 YVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMK 660

Query: 453 FISKIYNREIVVRDRHRFHHFK 474
            IS+I +R+IVVRD  RFHHF+
Sbjct: 661 LISEITHRKIVVRDSSRFHHFE 682



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 40/294 (13%)

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLG 126
           +FDE   RD   +S+++   +       A+ + R M     + PD   + +V S    L 
Sbjct: 142 LFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLR 201

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD---------------------- 164
           +  +G+ + +       N    + ++L+DM+ KCG  D                      
Sbjct: 202 SRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVS 261

Query: 165 ---------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
                    +AL+LFRSM GR + +WT++I+GL   G  + AV LF EM   GV  DD  
Sbjct: 262 GYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAF 321

Query: 216 FVGL-LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            + + +   +       GR+   S     G +  +     ++DM  +   +  A E  + 
Sbjct: 322 VLSIVIGGSADLAAFVLGRQLHGSTMR-LGFLSNMIVGNALIDMYSKCSDILSAREVFEG 380

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
           +    + I W T++      G  + A ++  R++  G +P +E  +V L  IYA
Sbjct: 381 ITFR-DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKP-NEVTFVGL--IYA 430


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 290/475 (61%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M++  V+ +  TY  V+  CA I DL LG  VH  +L+     D  V + L+ MYG C G
Sbjct: 212 MVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKC-G 270

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   R VFD +  R+ V W+A++  Y + G   ++++LF  M   G  P+E T   +L+
Sbjct: 271 EVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLN 330

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  + AL  G  + + +EK      V + NALI+M++K G +D +  +F  M  R I++
Sbjct: 331 ACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIIT 390

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + HG G +A+ +F++M+ A   P+ V F+G+LSA SH GLV +G  Y + + 
Sbjct: 391 WNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLM 450

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            +F I P +EHY CMV +L R+G + EA  F++   ++ + + WRTL++AC       L 
Sbjct: 451 RNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLG 510

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
             I + ++  +P     Y LLS++YAK  RW+    IR++M +R +KK PG++ +++ N+
Sbjct: 511 RRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRND 570

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F+    +H +S +IY+ + ++   +K  GYVP  + VL D+ +E KE  L+ HSEKL
Sbjct: 571 IHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKL 630

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L+K P   PIRI+KNLR+C+DCH+A K ISK+ NR I+VRD +RFHHF+D
Sbjct: 631 ALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRD 685



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 12/317 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN++ +   L AC+  G +  G   HG + KF      +V++ LVHMY  C   +EL  +
Sbjct: 115 PNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCS-HVELALQ 173

Query: 68  VFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           V D +      D  S+++++      G   +A+++ R+M    V  D +T V V+  C  
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 125 LGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           +  L++G  V + + +   M +  VG  + LIDM+ KCG+V  A  +F  +  R +V WT
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEFVG--SMLIDMYGKCGEVLNARNVFDGLQNRNVVVWT 291

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           +++     +G   E++ LF  M   G  P++  F  LL+AC+    +  G +   +    
Sbjct: 292 ALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEK 350

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G    +     +++M  +SG +  ++     M I  + I W  +I      G  K A  
Sbjct: 351 LGFKNHVIVRNALINMYSKSGSIDSSYNVFTDM-IYRDIITWNAMICGYSHHGLGKQALQ 409

Query: 303 ITKRLIGNEPMHESNYV 319
           + + ++  E     NYV
Sbjct: 410 VFQDMVSAEEC--PNYV 424



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 12/284 (4%)

Query: 20  CAGIGDLNLGKSVHGAVL-KFQFGDDIHVQ--NTLVHMYGSCEGGIELGRKVFDEMSERD 76
           CA +  L  GK++H   L + Q  +  H+   N+LVH+Y  C G + L R +FD M  R+
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKC-GQLGLARNLFDAMPLRN 80

Query: 77  SVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
            VSW+ ++ GY   G   + + LF+ M  +   CP+E    T LSAC+  G ++ G    
Sbjct: 81  VVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCH 140

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHG 192
             + K  +     + +AL+ M+++C  V+ AL++  ++ G     I S+ SV+  L   G
Sbjct: 141 GLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESG 200

Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252
           RG EAV +   M++  V  D V +VG++  C+    +  G      +    G +   E  
Sbjct: 201 RGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLR--GGLMFDEFV 258

Query: 253 GCM-VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           G M +DM  + G V  A      +    N ++W  L++A    G
Sbjct: 259 GSMLIDMYGKCGEVLNARNVFDGLQ-NRNVVVWTALMTAYLQNG 301



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 110 PDEITMVTVLSACTDLGALEVGKWVES--FIEKQMVNRS-VGLCNALIDMFAKCGDVDKA 166
           P    +  +L  C D+  L  GK + +   I  Q  N S +   N+L+ ++ KCG +  A
Sbjct: 10  PSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLA 69

Query: 167 LKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSH 225
             LF +M  R +VSW  ++AG    G  LE + LF+ M+      P++  F   LSACSH
Sbjct: 70  RNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSH 129

Query: 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE-ANPII- 283
            G V +G +    +   FG++        +V M  R   V+ A + +  +P E  N I  
Sbjct: 130 GGRVKEGMQ-CHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFS 188

Query: 284 WRTLISACCARGELKLAESITKRLI 308
           + ++++A    G  + A  + +R++
Sbjct: 189 YNSVLNALVESGRGEEAVEVLRRMV 213


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 291/470 (61%), Gaps = 2/470 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G SP+++T   V    AG+  +++G+ +HG  +K+    D+ V ++L HMY    G ++ 
Sbjct: 86  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR-NGKLQD 144

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           G  V   M  R+ V+W+ +I G A+ G     + L++ M+ISG  P++IT VTVLS+C+D
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L     G+ + +   K   +  V + ++LI M++KCG +  A K F        V W+S+
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 185 IAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           I+    HG+G EA+ LF  M E   +  ++VAF+ LL ACSH GL DKG E FD M   +
Sbjct: 265 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           G  P ++HY C+VD+L R+G + +A   I+ MPI+ + +IW+TL+SAC      ++A+ +
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 384

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
            K ++  +P   + YVLL++++A   RW   +++R+ M  + +KK  G +  E   E+++
Sbjct: 385 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  GD+S  +SKEIY  L E+  +MK  GY P T+ VL D++EE+KE  L +HSEKLA+A
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           FAL+  P G PIRI+KNLRVC+DCH A K+IS I NREI +RD  RFHHF
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHF 554



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 149/305 (48%), Gaps = 9/305 (2%)

Query: 23  IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
           +GD     +V+G + K  +       N L++ Y    G +   RKVFDEM +R   +W+A
Sbjct: 7   LGDFPSAVAVYGRMRKKNYMS----SNILINGYVRA-GDLVNARKVFDEMPDRKLTTWNA 61

Query: 83  MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142
           MI G  +   + + + LFR+M   G  PDE T+ +V S    L ++ +G+ +  +  K  
Sbjct: 62  MIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYG 121

Query: 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202
           +   + + ++L  M+ + G +     + RSM  R +V+W ++I G A +G     + L++
Sbjct: 122 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK 181

Query: 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCR 261
            M  +G  P+ + FV +LS+CS   +  +G++ + +++K   G    +     ++ M  +
Sbjct: 182 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK--IGASSVVAVVSSLISMYSK 239

Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
            G + +A +   +   E + ++W ++ISA    G+   A  +   +     M  +    L
Sbjct: 240 CGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFL 298

Query: 322 SHIYA 326
           + +YA
Sbjct: 299 NLLYA 303


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 179/417 (42%), Positives = 266/417 (63%), Gaps = 4/417 (0%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTV 118
           G   L +KV    S+++ ++W+ MIGGY R     +A+   + M   S + P++ +  + 
Sbjct: 89  GESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFASS 148

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L+AC  LG L   KWV S +    +  +  L +AL+D++AKCGD++ + ++F S+    +
Sbjct: 149 LAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDV 208

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
             W ++I G A HG   EA+ +F EM    V PD + F+GLL+ACSHCGL+ KG+ YFD 
Sbjct: 209 SIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDI 268

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M   F I PK+EHYG MVD+L R+GRVKEA+E I+ MPIE + +IWR+L+S+       +
Sbjct: 269 MSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPE 328

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           L E   + L         +YVLLS+IY+   +WE   K+RE+M K G++K  G + +E  
Sbjct: 329 LGEIAIQNL---SKAKSGDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKAKGKSWVEYG 385

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
             I+ F  GD SH + K IY++L+ + +K K  G+V  T  VL+D++EE+KE+ LN HSE
Sbjct: 386 GVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENLNYHSE 445

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           KLA+A+ +LK+ PGT IRI KN+R+C+DCH+  K +SK+ NR I++RDR RFH F+D
Sbjct: 446 KLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFED 502



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 4/190 (2%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML +  + PNKF++   L ACA +GDL+  K VH  ++      +  + + LV +Y  C 
Sbjct: 132 MLSFSDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKC- 190

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G IE  R+VF  +   D   W+AMI G+A  GL+T+AI +F +M+   V PD IT + +L
Sbjct: 191 GDIETSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLL 250

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
           +AC+  G L  GK + +   ++  +   +    A++D+  + G V +A +L  SM     
Sbjct: 251 TACSHCGLLGKGKVYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPD 310

Query: 178 IVSWTSVIAG 187
           +V W S+++ 
Sbjct: 311 VVIWRSLLSS 320


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 193/471 (40%), Positives = 291/471 (61%), Gaps = 3/471 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GV  +  T   VL  CA +GD+  GK +H  V+K     ++ V N L++MY    G +  
Sbjct: 90  GVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKF-GSLGH 148

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-ISGVCPDEITMVTVLSACT 123
            +KVF  +  +D VSW+ +I GYA+ GL+++AI+++  M+    + P++ T V++L A +
Sbjct: 149 AQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            +GAL+ G  +   + K  +   V +   LIDM+ KCG +D A+ LF  +  +  V W +
Sbjct: 208 HVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNA 267

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
           +I+   +HG G +A+ LF EM    V PD + FV LLSACSH GLV   +  F+ M+ ++
Sbjct: 268 MISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEY 327

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
           GI P ++HYGCMVD+  R+G ++ A  FI+KMPI+ +   W  L++AC   G ++L +  
Sbjct: 328 GIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHA 387

Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
           ++RL   +  +   YVLLS+IYA + +WE    +R +   RG++K PG + I L+N++  
Sbjct: 388 SERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDV 447

Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
           F  G+++H + +EIY  L ++  K+K  GYVP    VL D+ E++KE  L  HSE+LAIA
Sbjct: 448 FYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIA 507

Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           + ++ T P TPIRI KNLRVC DCH+ TKFIS I  REI+VRD  RFHHFK
Sbjct: 508 YGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFK 558



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 14  PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
           P V+KAC   GDL  GK +H  VLK  F  D+ V  +LVHMY S  G +   RK+FD+M 
Sbjct: 1   PPVVKAC---GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMY-SRFGLVGDARKLFDDMP 56

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
            RD  SW+AMI GY + G + +A+D+  +M++ GV  D IT+ +VL  C  +G +  GK 
Sbjct: 57  ARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL 116

Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
           +  ++ K  +   + + NALI+M+AK G +  A K+F  +  + +VSW ++I G A +G 
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGL 175

Query: 194 GLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEH 251
             EA+ ++  M E   + P+   +V +L A SH G + +G R +   +KN   +   +  
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN--CLYSDVFV 233

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN- 310
             C++DM  + G++ +A     ++P   N + W  +IS     G+ + A  + + +    
Sbjct: 234 GTCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKALELFREMKAER 292

Query: 311 -EPMHESNYVLLS 322
            +P H +   LLS
Sbjct: 293 VKPDHITFVSLLS 305


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 291/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+      VL A   + DL  G+S+H +V+K     +  +  +L  MY  C G
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC-G 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +FD+M   + + W+AMI GYA+ G + +AID+F +M    V PD I++ + +S
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G+LE  + +  ++ +      V + +ALIDMFAKCG V+ A  +F     R +V 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G  +HGR  EA++L+  M   GV P+DV F+GLL AC+H G+V +G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P+ +HY C++D+L R+G + +A+E I+ MP++    +W  L+SAC     ++L 
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++L   +P +  +YV LS++YA    W++  ++R  M ++G+ K  G + +E+   
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +  F  GDKSH + +EI   ++ +  ++K+ G+V      L D+N+E+ E+ L  HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TP GTP+RI KNLR C +CH+ATK ISK+ +REIVVRD +RFHHFKD
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKD 685



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 165/305 (54%), Gaps = 7/305 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           VSP+ FT+P +LKAC+G+  L +G+ VH  V +  F  D+ VQN L+ +Y  C   +   
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR-LGSA 173

Query: 66  RKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           R VF+   + ER  VSW+A++  YA+ G   +A+++F QM+   V PD + +V+VL+A T
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT 233

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  L+ G+ + + + K  +     L  +L  M+AKCG V  A  LF  M    ++ W +
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KND 242
           +I+G A +G   EA+ +F EM+   V PD ++    +SAC+  G +++ R  ++ + ++D
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +     I     ++DM  + G V E    +    ++ + ++W  +I      G  + A S
Sbjct: 354 YRDDVFIS--SALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410

Query: 303 ITKRL 307
           + + +
Sbjct: 411 LYRAM 415



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 48/315 (15%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H  +L         +   L+H   S  G I   R+VFD++       W+A+I GY+R
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHA-SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                DA+ ++  MQ++ V PD  T   +L AC+ L  L++G++V + + +   +  V +
Sbjct: 97  NNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFV 156

Query: 150 CNALIDMFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            N LI ++AKC  +  A  +F    +  RTIVSWT++++  A +G  +EA+ +F +M + 
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216

Query: 208 GVPPDDVAFVGLLSACS-----------------------------------HCGLVDKG 232
            V PD VA V +L+A +                                    CG V   
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA----HEFIQKMPIEANPIIWRTLI 288
           +  FD MK+     P +  +  M+    ++G  +EA    HE I K  +  + I   + I
Sbjct: 277 KILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFHEMINK-DVRPDTISITSAI 330

Query: 289 SACCARGELKLAESI 303
           SAC   G L+ A S+
Sbjct: 331 SACAQVGSLEQARSM 345


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 288/475 (60%), Gaps = 3/475 (0%)

Query: 1   MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           ML  G + P+ FTYP VLKACA + DL  G+ VH  V++  +  D+ V   L+ MY  C 
Sbjct: 156 MLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKC- 214

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G ++    VFD  + RD+V W++MI    + G   +A+ L R M   G+ P  +T+V+ +
Sbjct: 215 GCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAI 274

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           SA  D GAL  G+ +  +  ++       L  +L+DM+AK G V  A  LF  +  R ++
Sbjct: 275 SAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELI 334

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           SW ++I G  MHG    A  LF  M  EA V PD + FVG+LSAC+H G+V + +E FD 
Sbjct: 335 SWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDL 394

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
           M   + I P ++HY C+VD+L  SGR KEA + I+ M ++ +  IW  L++ C     ++
Sbjct: 395 MVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVE 454

Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
           LAE    +LI  EP    NYVLLS+IYA+  +WE+  ++R++M  RG+KKI   + IEL 
Sbjct: 455 LAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELK 514

Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
            + + F+ GD SH +S EIYE L+ +   + + GYVP T+ V  ++ +++K + +  HSE
Sbjct: 515 GKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSE 574

Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
           +LAIAF L+ TPPGT + + KNLRVC DCH   K IS+I  REI++RD +R+HHF
Sbjct: 575 RLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHF 629



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 144/302 (47%), Gaps = 7/302 (2%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N   Y  +L++C     +  G+ +H  +L    G D  +   LV +Y SC G + + R++
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASC-GLVSVARRL 120

Query: 69  FDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLG 126
           FDEM  + +V  W+ +I  YAR G    AI+L+R+M   G   PD  T   VL AC  L 
Sbjct: 121 FDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALL 180

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
            L  G+ V   + +      V +C  LIDM+AKCG VD+A  +F S   R  V W S+IA
Sbjct: 181 DLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIA 240

Query: 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGI 245
               +GR  EA+AL   M   G+ P  V  V  +SA +  G + +GRE      +  FG 
Sbjct: 241 ACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGS 300

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
             K++    ++DM  +SG V  A     ++      I W  +I      G    A  + +
Sbjct: 301 QDKLK--TSLLDMYAKSGWVTVARVLFDQL-FHRELISWNAMICGFGMHGHADHACELFR 357

Query: 306 RL 307
           R+
Sbjct: 358 RM 359


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 286/475 (60%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  VL         +L   +H  ++K  +     V   L+  Y     
Sbjct: 399 MSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGN 454

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF  +  +D V+WSAM+ G A+   S  A+++F Q+   GV P+E T  +V++
Sbjct: 455 VVESAR-VFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+   A +E GK + +   K   + ++ + +AL+ M++K G+++ A K+F     R IV
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIV 573

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I G   HG   +A+ +F+ M   G+P DDV F+G+L+AC+H GLV++G +YF+ M
Sbjct: 574 SWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIM 633

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ I  KIEHY CMVD+  R+G   +A + I  MP  A+P IWRTL++AC     L+L
Sbjct: 634 IKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLEL 693

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   ++L+  +P     YVLLS+I+A    WE+K  +R++MD+R +KK  G + IE+ N
Sbjct: 694 GKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+ F+ GD SH  S  +Y  L+E+  K+K  GY P T+ V  D+ EE KE  L++HSE+
Sbjct: 754 RIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSER 813

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIA+ L+  PPG PI+I KNLR+C DCH+  + IS I  R ++VRD +RFHHFK
Sbjct: 814 LAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFK 868



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 134/295 (45%), Gaps = 24/295 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  +  T    LK C  + D  +G+ VH   LK  F +D+ V  +LV MY   E   E 
Sbjct: 99  GLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTED-FED 157

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR +FDEM  ++ VSW++++ GYAR GL+ + I L  QMQ+ GV P+  T  TVL A  D
Sbjct: 158 GRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALAD 217

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              +E G  V + I K     +  +CNALI M+ K   V  A  +F SM  R  V+W  +
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGR 233
           I G A  G  LE   +F  M  AGV      F   L  CS           HCG+V  G 
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           E+   ++              ++    +   V EA +         N + W  +I
Sbjct: 338 EFAQDIRT------------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 153/301 (50%), Gaps = 15/301 (4%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK--FQFGDDIHVQNTLVHMYGSCEGGI 62
           GV  ++  +   LK C+   +LN  K +H  V+K  ++F  DI  +  L+  Y  C   +
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDI--RTALMVTYSKCSS-V 357

Query: 63  ELGRKVFDEM-SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +   K+F    +  + V+W+AMIGG+ +   +  A+DLF QM   GV P+  T  TVL+ 
Sbjct: 358 DEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417

Query: 122 -CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
             + L +    + ++++ EK        +  AL+D + K G+V ++ ++F S+  + IV+
Sbjct: 418 KPSSLLSQLHAQIIKAYYEK-----VPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA 472

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDKGREYFDSM 239
           W++++ GLA      +A+ +F ++++ GV P++  F  +++AC S    V+ G++   + 
Sbjct: 473 WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATA 532

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
               G    +     ++ M  + G ++ A +   +   E + + W ++I+     G+ K 
Sbjct: 533 VKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHGDAKK 590

Query: 300 A 300
           A
Sbjct: 591 A 591



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 4/232 (1%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++FDE   +D   ++ ++  ++R     +A+ LF+ +  SG+  D +T+   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L    VG+ V     K      V +  +L+DM+ K  D +    +F  M  + +VSWTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           ++G A +G   E + L  +M   GV P+   F  +L A +   +++ G +    + KN F
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                +     ++ M  +S  V +A      M +  + + W  +I    A G
Sbjct: 237 EFTTFV--CNALICMYLKSEMVGDAEAVFDSMVVR-DSVTWNIMIGGYAAIG 285


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 179/475 (37%), Positives = 280/475 (58%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G       Y  +L     + D+++GK +H  ++      +  + N L+ MY  C G
Sbjct: 328 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC-G 386

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +  F   SE+ ++SW+A+I GY + G   +A+ LF  M+ +G+ PD  T  +++ 
Sbjct: 387 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 446

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L  + +G+ + S++ +     SV   + L+DM+AKCG +D+AL+ F  M  R  +S
Sbjct: 447 ASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS 506

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +VI+  A +G    A+ +FE ML  G  PD V F+ +L+ACSH GL D+  +YF  MK
Sbjct: 507 WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMK 566

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + + I P  EHY C++D L R G   +  + + +MP +A+PIIW +++ +C   G  +LA
Sbjct: 567 HQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 626

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
                +L G EP   + YV+LS+IYA+  +WE    ++++M  RG++K  G + +E+  +
Sbjct: 627 RVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 686

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IY F   D +     EI + LD + ++M K GY P  +  L  ++ E K ++L  HSE+L
Sbjct: 687 IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 746

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFAL+ TP GTPIRI+KNL  C DCH+  K ISKI NR+I+VRD  RFHHFKD
Sbjct: 747 AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKD 801



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 14/299 (4%)

Query: 1   MLEYGVSPNKFTYPFVLK--ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML  GV P++ T   VL    C          S+H   +KF     + V NTL+  Y  C
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAY--C 181

Query: 59  EGGI-ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           + G+    R+VF EM ++D+V+++AM+ G ++ GL T A+ LF  M+ +G+     T  +
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSS 241

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L+    +  L +G  V + + +     +V + N+L+D ++KC  +D   +LF  M  R 
Sbjct: 242 ILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 301

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            VS+  +IA  A +      + LF EM + G     + +  +LS       V  G++   
Sbjct: 302 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 361

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +    G+  +      ++DM  + G +  A         E + I W  LI+     G+
Sbjct: 362 QLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQ 418



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 10/183 (5%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   N ++  Y S  G +   + +F     R++ +W+ M+  +A  G ++DA+ LFR M
Sbjct: 73  NIFSLNLILSAYSS-SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 104 QISGVCPDEITMVTVLS--ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
              GV PD +T+ TVL+   CT          +  F  K  ++  V +CN L+D + K G
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHG 184

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
            +  A ++F  M+ +  V++ +++ G +  G   +A+ LF  M  AG+P     F  +L+
Sbjct: 185 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 222 ACS 224
             +
Sbjct: 245 VAA 247



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           QM ++++   N ++  ++  GD+  A  LF S   R   +WT ++   A  GR  +A++L
Sbjct: 68  QMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSL 127

Query: 201 FEEMLEAGVPPDDVAFVGLLS--ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
           F  ML  GV PD V    +L+   C+   L              FG+   +     ++D 
Sbjct: 128 FRAMLGEGVIPDRVTVTTVLNLPGCTVPSL--------HPFAIKFGLDTHVFVCNTLLDA 179

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            C+ G +  A     +M  + + + +  ++  C   G
Sbjct: 180 YCKHGLLAAARRVFLEMH-DKDAVTYNAMMMGCSKEG 215


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 271/415 (65%), Gaps = 34/415 (8%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FT+PFVLK    + D+  G+ +HG V+ F F   +HV   L+ MY SC GG+   RK
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSC-GGLGDARK 172

Query: 68  VFDEMSERD---------------------------------SVSWSAMIGGYARLGLST 94
           +FDEM  +D                                  VSW+ +I GYA+ G ++
Sbjct: 173 MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRAS 232

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           +AI++F++M +  V PDE+T++ VLSAC DLG+LE+G+ + S+++ + +NR+V L NA+I
Sbjct: 233 EAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVI 292

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+AK G++ KAL +F  +N R +V+WT++IAGLA HG G EA+A+F  M++AGV P+DV
Sbjct: 293 DMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDV 352

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F+ +LSACSH G VD G+  F+SM++ +GI P IEHYGCM+D+L R+G+++EA E I+ 
Sbjct: 353 TFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKS 412

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MP +AN  IW +L++A     +L+L E     LI  EP +  NY+LL+++Y+ L RW++ 
Sbjct: 413 MPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
             +R +M   G+KK+ G + IE++N +Y+F+ GD +H Q + I+E+L EM  +++
Sbjct: 473 RMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P++ T   VL ACA +G L LG+ +   V        + + N ++ MY    G
Sbjct: 241 MLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK-SG 299

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I     VF+ ++ER+ V+W+ +I G A  G   +A+ +F +M  +GV P+++T + +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359

Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+ +G +++GK +  S   K  ++ ++     +ID+  + G + +A ++ +SM  +   
Sbjct: 360 ACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANA 419

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGV---PPDDVAFVGLLSACSHCGLVDKGREY 235
           + W S++A   +H      + L E  L   +   P +   ++ L +  S+ G  D+ R  
Sbjct: 420 AIWGSLLAASNVH----HDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475

Query: 236 FDSMK 240
            + MK
Sbjct: 476 RNMMK 480



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 35/246 (14%)

Query: 96  AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
           AI ++R++      PD  T   VL     +  +  G+ +   +     + SV +   LI 
Sbjct: 100 AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQ 159

Query: 156 MFAKCGDVDKALKLFRSM--------NG-------------------------RTIVSWT 182
           M+  CG +  A K+F  M        N                          R  VSWT
Sbjct: 160 MYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWT 219

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
            VI+G A  GR  EA+ +F+ ML   V PD+V  + +LSAC+  G ++ G E   S  + 
Sbjct: 220 CVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG-ERICSYVDH 278

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
            G+   +     ++DM  +SG + +A +  + +  E N + W T+I+     G    A +
Sbjct: 279 RGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGHGAEALA 337

Query: 303 ITKRLI 308
           +  R++
Sbjct: 338 MFNRMV 343


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 289/479 (60%), Gaps = 6/479 (1%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+  G   ++ T+  +L A + +    +   +H  VLK+   DD  + N L+  YG C G
Sbjct: 1054 MMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC-G 1112

Query: 61   GIELGRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
             +    K+F  MSE RD VSW++MI GY    L   A+DL   M   G   D  T  TVL
Sbjct: 1113 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVL 1172

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            SAC  +  LE G  V +   +  +   V + +AL+DM++KCG +D A + F  M  R + 
Sbjct: 1173 SACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVY 1232

Query: 180  SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREYFDS 238
            SW S+I+G A HG G +A+ LF  M+  G PPD VA  +G+LSACSH G V++G E+F S
Sbjct: 1233 SWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKS 1292

Query: 239  MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC-ARG-E 296
            M   + + P++EH+ CMVD+L R+G++ E  +FI  MP++ N +IWRT++ ACC A G  
Sbjct: 1293 MSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRN 1352

Query: 297  LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
             +L     + L+  EP +  NYVLL+++YA   +WE   K R  M +  +KK  G + + 
Sbjct: 1353 TELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVT 1412

Query: 357  LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
            + + ++ FV GDK H +   IY+ L E+ RKM+ AGY+P T   L D+  E+KE+ L+ H
Sbjct: 1413 MKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYH 1472

Query: 417  SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            SEK+A+AF L +     PIRI+KNLRVC DCHSA  +ISKI  R+IV+RD +RFHHF+D
Sbjct: 1473 SEKIAVAFVLTRQ-SALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFED 1530



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 170/343 (49%), Gaps = 29/343 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M+  G  PN + +   L+AC  +G     LG  +HG + K ++G D+ V N L+ MYGSC
Sbjct: 636 MVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC 695

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC----PDEIT 114
                  R VFD +  R+S+SW+++I  Y+R G    A DLF  MQ  G+     P+E T
Sbjct: 696 LDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYT 755

Query: 115 ---MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFR 171
              ++T   +  D G L V + + + +EK    + + + +AL+  FA+ G  D A  +F 
Sbjct: 756 FGSLITAACSSVDFG-LCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFE 814

Query: 172 SMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVD 230
            M  R +VS   ++ GL    +G  A  +F EM +  G+  D  ++V LLSA S   +++
Sbjct: 815 QMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFSVLE 872

Query: 231 ----KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
               KGRE    +        K+     +V+M  +SG + +A    + M +E + + W +
Sbjct: 873 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKDSVSWNS 931

Query: 287 LISAC----CARGELKLAESITK-RLIGNEPMHESNYVLLSHI 324
           LIS      C+      AES  + R  G+ P   SN+ L+S +
Sbjct: 932 LISGLDQNECSEDA---AESFLRMRRTGSMP---SNFTLISTL 968



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 153/322 (47%), Gaps = 15/322 (4%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M   G  P+ FT    L +CA +G + LG+ +H   LK     D+ V N L+ +Y    G
Sbjct: 952  MRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAE-TG 1010

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVL 119
                  KVF  M E D VSW+++IG  +    S + A+  F +M   G     +T + +L
Sbjct: 1011 CFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINIL 1070

Query: 120  SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
            SA + L   EV   + + + K  ++    + NAL+  + KCG++++  K+F  M+  R  
Sbjct: 1071 SAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDE 1130

Query: 179  VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
            VSW S+I+G   +    +A+ L   M++ G   D   F  +LSAC+    +++G E    
Sbjct: 1131 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEV--- 1187

Query: 239  MKNDFGIIPKIEH----YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
              +  GI   +E        +VDM  + GR+  A  F + MP+  N   W ++IS     
Sbjct: 1188 --HACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARH 1244

Query: 295  GELKLAESITKRLI--GNEPMH 314
            G  + A  +  R++  G  P H
Sbjct: 1245 GHGEKALKLFTRMMLDGQPPDH 1266



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 29   GKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87
            G+ VH  V++    D+ + + N LV+MY    G I     VF+ M E+DSVSW+++I G 
Sbjct: 878  GREVHAHVIRTGLNDNKVAIGNGLVNMYAK-SGAIADACSVFELMVEKDSVSWNSLISGL 936

Query: 88   ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV 147
             +   S DA + F +M+ +G  P   T+++ LS+C  LG + +G+ +     K  ++  V
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 996

Query: 148  GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-EAVALFEEMLE 206
             + NAL+ ++A+ G   + LK+F  M     VSW SVI  L+     + +AV  F EM+ 
Sbjct: 997  SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMR 1056

Query: 207  AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
             G     V F+ +LSA S   L +   +   ++   + +         ++    + G + 
Sbjct: 1057 GGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNALLSCYGKCGEMN 1115

Query: 267  EAHEFIQKMPIEANPIIWRTLISA 290
            E  +   +M    + + W ++IS 
Sbjct: 1116 ECEKIFARMSETRDEVSWNSMISG 1139



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 29  GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
            + +H   +K+ F  ++ + NTL+++Y    G +   +K+FDEMS R+ V+W+ +I GY 
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRI-GDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG--ALEVGKWVESFIEKQMVNRS 146
           + G   +A   FR M  +G  P+     + L AC + G    ++G  +   I K      
Sbjct: 622 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 681

Query: 147 VGLCNALIDMFAKCGD-VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
           V +CN LI M+  C D  + A  +F  +  R  +SW S+I+  +  G  + A  LF  M 
Sbjct: 682 VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQ 741

Query: 206 EAGV----PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
           + G+     P++  F  L++A   C  VD G    + M      + ++E  G + D+   
Sbjct: 742 KEGLGFSFKPNEYTFGSLITAA--CSSVDFGLCVLEQM------LARVEKSGFLQDLYVG 793

Query: 262 SGRVKEAHEF 271
           S  V     F
Sbjct: 794 SALVSGFARF 803



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 23/160 (14%)

Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
           L N LI+++ + GD+  A KLF  M+ R +V+W  +I+G   +G+  EA A F +M+ AG
Sbjct: 581 LSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAG 640

Query: 209 VPPDDVAFVGLLSAC-----SHC-------GLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
             P+  AF   L AC     S C       GL+ K R   D +  +      I  YG  +
Sbjct: 641 FIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNV----LISMYGSCL 696

Query: 257 DMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           D         +A     ++ I  N I W ++IS    RG+
Sbjct: 697 D------SANDARSVFDRIGIR-NSISWNSIISVYSRRGD 729


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/464 (38%), Positives = 281/464 (60%), Gaps = 2/464 (0%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           T+  +++A AG+G + +G+ +H   LK   GDD  V   L+ MY  C G IE    VFD+
Sbjct: 220 TFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKC-GSIEDAHCVFDQ 278

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M E+ +V W+++I  YA  G S +A+  + +M+ SG   D  T+  V+  C  L +LE  
Sbjct: 279 MPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYA 338

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           K   + + ++  +  +    AL+D ++K G ++ A  +F  M  + ++SW ++IAG   H
Sbjct: 339 KQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNH 398

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G+G EAV +FE+ML  G+ P+ V F+ +LSACS+ GL ++G E F SM  D  + P+  H
Sbjct: 399 GQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMH 458

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311
           Y CMV++L R G + EA+E I+  P +    +W TL++AC     L+L +   + L G E
Sbjct: 459 YACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGME 518

Query: 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSH 371
           P    NY++L ++Y    + ++   + + + ++G++ +P  T IE+  + Y F+CGDKSH
Sbjct: 519 PEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSH 578

Query: 372 HQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPP 431
            Q+KEIYE ++ M  ++ + GYV     +L D++EE++   L  HSEKLAIAF L+ TP 
Sbjct: 579 SQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQR-ILKYHSEKLAIAFGLINTPH 637

Query: 432 GTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            TP++I +  RVC DCHSA KFI+ +  REIVVRD  RFHHF+D
Sbjct: 638 WTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRD 681



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 153/313 (48%), Gaps = 5/313 (1%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           TY  ++ AC G+  +   K V   ++   F  D++V N ++ ++  C G +   RK+FDE
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKC-GLMLDARKLFDE 177

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
           M E+D  SW  MIGG+   G  ++A  LF  M          T  T++ A   LG ++VG
Sbjct: 178 MPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVG 237

Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
           + + S   K+ V     +  ALIDM++KCG ++ A  +F  M  +T V W S+IA  A+H
Sbjct: 238 RQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 297

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
           G   EA++ + EM ++G   D      ++  C+    ++  ++   ++    G    I  
Sbjct: 298 GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRR-GYDTDIVA 356

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI--G 309
              +VD   + GR+++A     +M    N I W  LI+     G+ + A  + ++++  G
Sbjct: 357 NTALVDFYSKWGRMEDAWHVFNRMR-RKNVISWNALIAGYGNHGQGEEAVEMFEQMLREG 415

Query: 310 NEPMHESNYVLLS 322
             P H +   +LS
Sbjct: 416 MIPNHVTFLAVLS 428



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 6/243 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G   + FT   V++ CA +  L   K  H A+++  +  DI     LV  Y S  G
Sbjct: 310 MRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFY-SKWG 368

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E    VF+ M  ++ +SW+A+I GY   G   +A+++F QM   G+ P+ +T + VLS
Sbjct: 369 RMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLS 428

Query: 121 ACTDLGALEVGKW--VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
           AC+  G  E G W    S      V         ++++  + G +D+A +L RS   + T
Sbjct: 429 ACSYSGLSERG-WEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPT 487

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
              W +++    MH   LE   L  E L    P     ++ LL+  +  G + +      
Sbjct: 488 TNMWATLLTACRMH-ENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQ 546

Query: 238 SMK 240
           ++K
Sbjct: 547 TLK 549



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 36/330 (10%)

Query: 95  DAIDLFRQMQIS--GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
           +A++LF  +++   G      T   ++SAC  L ++   K V +++        + + N 
Sbjct: 98  EAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNR 157

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           ++ +  KCG +  A KLF  M  + + SW ++I G    G   EA  LF  M E      
Sbjct: 158 VLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGR 217

Query: 213 DVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
              F  ++ A +  GLV  GR+    ++K   G    +     ++DM  + G +++AH  
Sbjct: 218 SRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVS--CALIDMYSKCGSIEDAHCV 275

Query: 272 IQKMPIEANPIIWRTLISACCARG--ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
             +MP E   + W ++I++    G  E  L+     R  G +  H +  +++  I A+L 
Sbjct: 276 FDQMP-EKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVI-RICARLA 333

Query: 330 RWEKKTKIREVMDKRGMKK--IPGSTLIE-------LDNEIYEF--------------VC 366
             E   +    + +RG     +  + L++       +++  + F              + 
Sbjct: 334 SLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIA 393

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396
           G  +H Q +E  EM ++M R+    G +P 
Sbjct: 394 GYGNHGQGEEAVEMFEQMLRE----GMIPN 419


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 288/488 (59%), Gaps = 14/488 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV PN+FT   V+  C    DLNLGK V     K     +I V+N+ +++Y   +G
Sbjct: 272 MLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLR-KG 330

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLST-----------DAIDLFRQMQISGVC 109
             +   + F+EM +   ++W+AMI GYA++  +             A+ +FR ++ S + 
Sbjct: 331 ETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMK 390

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           PD  T  ++LS C+ + ALE G+ + +   K      V + +AL++M+ KCG ++ A K 
Sbjct: 391 PDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKA 450

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M+ RT+V+WTS+I+G + HGR  EA+ LFE+M  AGV P+++ FV +LSACS+ GL 
Sbjct: 451 FVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLA 510

Query: 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
           +K   YFD MK ++ I P ++HYGCMVDM  R GR+ +A  FI++   E N  IW +L++
Sbjct: 511 EKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVA 570

Query: 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKI 349
            C + G ++LA     RLI   P     YVLL ++Y    RW    ++R++M + G+  +
Sbjct: 571 GCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVL 630

Query: 350 PGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDK 409
              + I + +++Y F   DK+H  S E+Y++L+ +  K K  GY P  S  L D  ++ K
Sbjct: 631 MDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEPYQSAELSDSEDDKK 690

Query: 410 EDA--LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
             A  +  HSE+LA+A  LL+TPPG  +R+ KN+ +C DCHS+ KF S + NREIVVRD 
Sbjct: 691 PPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVVRDS 750

Query: 468 HRFHHFKD 475
            R H FKD
Sbjct: 751 KRLHKFKD 758



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 153/312 (49%), Gaps = 25/312 (8%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           MLE G  P+ +T   +L AC+   + +LG  VHG  +K++      + N+L  MY    G
Sbjct: 170 MLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAK-SG 228

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGG------YARLGLSTDAIDLFRQMQISGVCPDEIT 114
            +E   + F  + +++ ++W+ MI        Y  LGL+     LF  M + GV P+E T
Sbjct: 229 SLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLT-----LFLDMLMDGVLPNEFT 283

Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           + +V+S C     L +GK V++F  K     ++ + N+ + ++ + G+ D+A++ F  M+
Sbjct: 284 LTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMD 343

Query: 175 GRTIVSWTSVIAGLAM-----------HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             +I++W ++I+G A              RG +A+ +F  +  + + PD   F  +LS C
Sbjct: 344 DVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVC 403

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           S    +++G E   +     G +  +     +V+M  + G +++A +   +M I    + 
Sbjct: 404 SSMMALEQG-EQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIR-TLVT 461

Query: 284 WRTLISACCARG 295
           W ++IS     G
Sbjct: 462 WTSMISGYSQHG 473



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 141/290 (48%), Gaps = 4/290 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  G +     Y  +L  C   G L   +++HG ++K     D+ V  +LV+ Y  C G
Sbjct: 69  MLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRC-G 127

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +  R +FD+M E++ V+W+A+I GY       +A+++F +M  +G  P   T+  +L+
Sbjct: 128 ASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLN 187

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC+     ++G  V  +  K        + N+L  M+AK G ++ A++ FR +  + +++
Sbjct: 188 ACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVIT 247

Query: 181 WTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           WT++I+  A      E  + LF +ML  GV P++     ++S C     ++ G++   + 
Sbjct: 248 WTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQ-VQAF 306

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
               G    I      + +  R G   EA  F ++M  + + I W  +IS
Sbjct: 307 CFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMD-DVSIITWNAMIS 355


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 291/475 (61%), Gaps = 2/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+      VL A   + DL  G+S+H +V+K     +  +  +L  MY  C G
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC-G 271

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +FD+M   + + W+AMI GYA+ G + +AID+F +M    V PD I++ + +S
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  +G+LE  + +  ++ +      V + +ALIDMFAKCG V+ A  +F     R +V 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I G  +HGR  EA++L+  M   GV P+DV F+GLL AC+H G+V +G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA 451

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D  I P+ +HY C++D+L R+G + +A+E I+ MP++    +W  L+SAC     ++L 
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           E   ++L   +P +  +YV LS++YA    W++  ++R  M ++G+ K  G + +E+   
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           +  F  GDKSH + +EI   ++ +  ++K+ G+V      L D+N+E+ E+ L  HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIA+ L+ TP GTP+RI KNLR C +CH+ATK ISK+ +REIVVRD +RFHHFKD
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKD 685



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 164/305 (53%), Gaps = 7/305 (2%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           VSP+ FT+P +LKAC+G+  L +G+ VH  V +  F  D+ VQN L+ +Y  C   +   
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR-LGSA 173

Query: 66  RKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
           R VF+   + ER  VSW+A++  YA+ G   +A+++F  M+   V PD + +V+VL+A T
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFT 233

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
            L  L+ G+ + + + K  +     L  +L  M+AKCG V  A  LF  M    ++ W +
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KND 242
           +I+G A +G   EA+ +F EM+   V PD ++    +SAC+  G +++ R  ++ + ++D
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +     I     ++DM  + G V E    +    ++ + ++W  +I      G  + A S
Sbjct: 354 YRDDVFIS--SALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410

Query: 303 ITKRL 307
           + + +
Sbjct: 411 LYRAM 415



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 48/315 (15%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           K +H  +L         +   L+H   S  G I   R+VFD++       W+A+I GY+R
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHA-SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                DA+ ++  MQ++ V PD  T   +L AC+ L  L++G++V + + +   +  V +
Sbjct: 97  NNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFV 156

Query: 150 CNALIDMFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            N LI ++AKC  +  A  +F    +  RTIVSWT++++  A +G  +EA+ +F  M + 
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM 216

Query: 208 GVPPDDVAFVGLLSACS-----------------------------------HCGLVDKG 232
            V PD VA V +L+A +                                    CG V   
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA----HEFIQKMPIEANPIIWRTLI 288
           +  FD MK+     P +  +  M+    ++G  +EA    HE I K  +  + I   + I
Sbjct: 277 KILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFHEMINK-DVRPDTISITSAI 330

Query: 289 SACCARGELKLAESI 303
           SAC   G L+ A S+
Sbjct: 331 SACAQVGSLEQARSM 345


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/475 (37%), Positives = 280/475 (58%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G       Y  +L     + D+++GK +H  ++      +  + N L+ MY  C G
Sbjct: 328 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC-G 386

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +  F   SE+ ++SW+A+I GY + G   +A+ LF  M+ +G+ PD  T  +++ 
Sbjct: 387 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 446

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L  + +G+ + S++ +     SV   + L+DM+AKCG +D+AL+ F  M  R  +S
Sbjct: 447 ASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS 506

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +VI+  A +G    A+ +FE ML  G  PD V F+ +L+ACSH GL D+  +YF  MK
Sbjct: 507 WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMK 566

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + + I P  EHY C++D L R G   +  + + +MP +A+PIIW +++ +C   G  +LA
Sbjct: 567 HQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 626

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
                +L G EP   + YV+LS+IYA+  +WE    ++++M  RG++K  G + +E+  +
Sbjct: 627 RVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 686

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IY F   D +     EI + LD + ++M K GY P  +  L  ++ E K ++L  HSE+L
Sbjct: 687 IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 746

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFAL+ TP GTPIRI+KNL  C DCH+  K ISKI NR+I+VRD  RFHHFKD
Sbjct: 747 AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKD 801



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 14/299 (4%)

Query: 1   MLEYGVSPNKFTYPFVLK--ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML  GV P++ T   VL    C          S+H   +KF     + V NTL+  Y  C
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAY--C 181

Query: 59  EGGI-ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           + G+    R+VF EM ++D+V+++AM+ G ++ GL T A+ LF  M+ +G+     T  +
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSS 241

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           +L+    +  L +G  V + + +     +V + N+L+D ++KC  +D   +LF  M  R 
Sbjct: 242 ILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 301

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            VS+  +IA  A +      + LF EM + G     + +  +LS       V  G++   
Sbjct: 302 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 361

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +    G+  +      ++DM  + G +  A         E + I W  LI+     G+
Sbjct: 362 QLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQ 418



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 6/181 (3%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   N ++  Y S  G +   + +F     R++ +W+ M+  +A  G ++DA+ LFR M
Sbjct: 73  NIFSLNLILSAYSS-SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
              GV PD +T+ TVL    +L    V   +  F  K  ++  V +CN L+D + K G +
Sbjct: 132 LGEGVIPDRVTVTTVL----NLPGCTVPS-LHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
             A ++F  M+ +  V++ +++ G +  G   +A+ LF  M  AG+P     F  +L+  
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVA 246

Query: 224 S 224
           +
Sbjct: 247 A 247



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           QM ++++   N ++  ++  GD+  A  LF S   R   +WT ++   A  GR  +A++L
Sbjct: 68  QMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSL 127

Query: 201 FEEMLEAGVPPDDVAFVGLLS--ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
           F  ML  GV PD V    +L+   C+   L              FG+   +     ++D 
Sbjct: 128 FRAMLGEGVIPDRVTVTTVLNLPGCTVPSL--------HPFAIKFGLDTHVFVCNTLLDA 179

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
            C+ G +  A     +M  + + + +  ++  C   G
Sbjct: 180 YCKHGLLAAARRVFLEMH-DKDAVTYNAMMMGCSKEG 215


>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
 gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
          Length = 631

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/479 (40%), Positives = 285/479 (59%), Gaps = 6/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCE 59
           M+  GV PN+ T+  +L ACA   D+  G ++H  V   +FG   + V   L+ MYG C 
Sbjct: 146 MVAEGVRPNEVTFVSILGACAAARDVKHGTAIHELVESSEFGRSYLSVGTALIDMYGKC- 204

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G  EL  +VF++M  RD V W+AMI   ++ GL   A+ LFR M + G  PDE+T+V  L
Sbjct: 205 GRPELASRVFEKMERRDLVVWNAMITVCSQQGLDEQALRLFRVMDLEGHTPDEVTLVAAL 264

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC++L +L  GK +   I    ++ S+   L  AL++M+ + G ++ AL++F  MN   
Sbjct: 265 EACSNLNSLAAGKKLHELILDAGLDSSIKMVLATALVNMYGRYGQLEDALRVFEKMNHWN 324

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
           +V+WT++IA  A HG  + A+ L   M   GV  DD+ F+ +L ACSH G+++ G   F 
Sbjct: 325 LVAWTALIAAFAQHG-DVHAIDLSWRMHLEGVQADDIVFLSVLHACSHAGVLEAGLSCFQ 383

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            M  DFG+     HY CMVD+L R GRV EA E +  MP E   +  +TL++AC   G+ 
Sbjct: 384 GMVADFGVRGGAAHYSCMVDLLARCGRVAEAEELLHSMPFEPAHMEMKTLLAACRVSGDT 443

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
                + +   G  P+  + YVL+SH YA   +W++  ++RE M K G+KK  G + +E+
Sbjct: 444 PRGARVARLASGLIPLDAAPYVLMSHAYAAAEKWDEVAEVRERMAKLGVKKPRGWSCVEV 503

Query: 358 DNEIYEFVCGDKS-HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
            N +++F  G+ S H ++ EI   L  +   +K+AGYVP T ++   + E+DKED L  H
Sbjct: 504 KNRVHQFFAGNFSWHSEAAEIEVELRRLQAVVKEAGYVPDTGQIGHCVQEDDKEDLLALH 563

Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           SE++AIAF LL+ P G PI +VKNLRVC+DCH+  K IS+   R IVVRD +RFH F++
Sbjct: 564 SERVAIAFGLLRVPAGLPIHVVKNLRVCSDCHAVAKIISRSVGRRIVVRDAYRFHRFEN 622



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 7/290 (2%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
            +  +L+ C     L  G+ +H  ++    G D+ + N L+ MYG C G +E  R VF++
Sbjct: 55  AFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKC-GAMEDARAVFEK 113

Query: 72  MSERDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
           +   +SV SW+AMI G+A  G    A+D FR+M   GV P+E+T V++L AC     ++ 
Sbjct: 114 IESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDVKH 173

Query: 131 GKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA 189
           G  +   +E     RS + +  ALIDM+ KCG  + A ++F  M  R +V W ++I   +
Sbjct: 174 GTAIHELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDLVVWNAMITVCS 233

Query: 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249
             G   +A+ LF  M   G  PD+V  V  L ACS+   +  G++  + +  D G+   I
Sbjct: 234 QQGLDEQALRLFRVMDLEGHTPDEVTLVAALEACSNLNSLAAGKKLHE-LILDAGLDSSI 292

Query: 250 EHY--GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +      +V+M  R G++++A    +KM    N + W  LI+A    G++
Sbjct: 293 KMVLATALVNMYGRYGQLEDALRVFEKMN-HWNLVAWTALIAAFAQHGDV 341


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/496 (38%), Positives = 299/496 (60%), Gaps = 39/496 (7%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F +  ++KACA +G ++ G+ VH   +  ++ +D  V+++LV MY  C G +   + 
Sbjct: 171 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKC-GLLNSAKA 229

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD +  ++++SW+AM+ GYA+ G   +A++LFR + +  +     +   ++S     G 
Sbjct: 230 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNL----YSWTALIS-----GF 280

Query: 128 LEVGKWVESF-------------IEKQMVNRSVGLC--------------NALIDMFAKC 160
           ++ GK +E+F             ++  +++  VG C              NALIDM+AKC
Sbjct: 281 VQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKC 340

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
            DV  A  +F  M  R +VSWTS+I G+A HG+  +A+AL+++M+  GV P++V FVGL+
Sbjct: 341 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 400

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            ACSH G V+KGRE F SM  D+GI P ++HY C++D+L RSG + EA   I  MP   +
Sbjct: 401 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 460

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIRE 339
              W  L+SAC  +G  ++   I   L+ +  + + S Y+LLS+IYA    W K ++ R 
Sbjct: 461 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARR 520

Query: 340 VMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTS 398
            + +  ++K PG + +E+  E   F  G+ SH   ++I+ +L ++  +M+ + GYVP TS
Sbjct: 521 KLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTS 580

Query: 399 EVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIY 458
            +L D++E++KE  L  HSE+ A+A+ LLK  PGTPIRIVKNLRVC DCH   K IS+I 
Sbjct: 581 WILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT 640

Query: 459 NREIVVRDRHRFHHFK 474
            REI+VRD  R+HHFK
Sbjct: 641 EREIIVRDATRYHHFK 656



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 57/337 (16%)

Query: 26  LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIG 85
           L   K++H  ++K        + NTLV++YG C G      +VFDEM  RD ++W++++ 
Sbjct: 87  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC-GAASHALQVFDEMPHRDHIAWASVLT 145

Query: 86  GYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVE-SFIEKQMV 143
              +  LS   + +F  +  S    PD+     ++ AC +LG+++ G+ V   FI  +  
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 205

Query: 144 NRSVGLCNALIDMFAKCGDVD-------------------------------KALKLFRS 172
           N  V + ++L+DM+AKCG ++                               +AL+LFR 
Sbjct: 206 NDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 264

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDK 231
           +  + + SWT++I+G    G+GLEA ++F EM    V   D +    ++ AC++      
Sbjct: 265 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 324

Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           GR+                H   ++DM  +   V  A +   +M    + + W +LI   
Sbjct: 325 GRQV---------------HGNALIDMYAKCSDVIAAKDIFSRMR-HRDVVSWTSLIVGM 368

Query: 292 CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
              G+ + A ++   ++  G +P +E  +V L  IYA
Sbjct: 369 AQHGQAEKALALYDDMVSHGVKP-NEVTFVGL--IYA 402


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/428 (44%), Positives = 261/428 (60%), Gaps = 39/428 (9%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N+++  +  C G +E    +F EM  RD VSW++M+  YA+ G   +A+ LF QMQ  GV
Sbjct: 10  NSMLSGFVKC-GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQAVGV 68

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
                                              N  VG   AL+DM+AKCG +  A +
Sbjct: 69  -----------------------------------NSIVG--TALVDMYAKCGKISLATQ 91

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F +M  + +++W ++IAG+A+ G   EA  LF+EM EAGV P+D+ FV +LSACSH G+
Sbjct: 92  VFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGM 151

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           VD+G++  D M + +GI PK+EHYGC++D+L R+G ++EA E I  MP+E NP     L+
Sbjct: 152 VDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALL 211

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
             C   G  +L E + KRLI  +P H   Y+LLS+IYA   +W+   K+R +M   G+ K
Sbjct: 212 EGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 271

Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA-GYVPTTSEVLLDINEE 407
           +PG ++IEL   ++ FV GD SH +S +IYE L+E+  ++K A GY   T   LLD+ EE
Sbjct: 272 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNGLLDMEEE 331

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           DKE AL  HSEKLAIA+ LL       IRIVKNLRVC DCH  TK ISK+Y  EI+VRDR
Sbjct: 332 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDR 391

Query: 468 HRFHHFKD 475
           +RFHHF+D
Sbjct: 392 NRFHHFED 399



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 47  VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS 106
           V   LV MY  C G I L  +VF+ M  +D ++W+ +I G A LG   +A  LF++M+ +
Sbjct: 72  VGTALVDMYAKC-GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEA 130

Query: 107 GVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
           GV P++IT V +LSAC+  G ++ G K ++       +   V     +ID+ A+ G +++
Sbjct: 131 GVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEE 190

Query: 166 ALKLFRSM 173
           A++L  +M
Sbjct: 191 AMELIGTM 198


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/475 (37%), Positives = 286/475 (60%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ++   V PN+++   VL+AC  +  L+ GK +H   +K     D+ V N L+  Y  C  
Sbjct: 336 LMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCND 395

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   K+F  + + + VSW+ ++ G+++ GL  +A+ +F +MQ + +   ++T  +VL 
Sbjct: 396 -MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 454

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC    ++     +   IEK   N    + N+LID +AKCG +  ALK+F+ +  R I+S
Sbjct: 455 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 514

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G A+HG+  +A+ LF+ M ++ V  +D+ FV LLS C   GLV+ G   FDSM+
Sbjct: 515 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMR 574

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
            D GI P +EHY C+V +L R+GR+ +A +FI  +P   + ++WR L+S+C     + L 
Sbjct: 575 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 634

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               ++++  EP  E+ YVLLS++YA     ++   +R+ M   G++K+PG + +E+  E
Sbjct: 635 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGE 694

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           I+ F  G   H   + I  ML+ +  K  + GY+P  + VL D+++E K   L  HSE+L
Sbjct: 695 IHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERL 754

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+A+ L+ TPPG PIRI+KNLR C DCH+A   ISKI  REI+VRD +RFHHF+D
Sbjct: 755 ALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFED 809



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 147/289 (50%), Gaps = 7/289 (2%)

Query: 30  KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
           + +HG  +K     + HV   L+ MY  C G I+  R  F+ +   D +  S MI  YA+
Sbjct: 264 QGIHGCAIKTLNDTEPHVGGALLDMYAKC-GDIKDARLAFEMIPYDDVILLSFMISRYAQ 322

Query: 90  LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
              +  A +LF ++  S V P+E ++ +VL ACT++  L+ GK + +   K      + +
Sbjct: 323 SNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFV 382

Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
            NAL+D +AKC D+D +LK+F S+     VSW +++ G +  G G EA+++F EM  A +
Sbjct: 383 GNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQM 442

Query: 210 PPDDVAFVGLLSAC-SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
           P   V +  +L AC S   +   G+ +    K+ F     I +   ++D   + G +++A
Sbjct: 443 PCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDA 500

Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317
            +  Q + +E + I W  +IS     G+   A  +  R+  N+   ESN
Sbjct: 501 LKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRM--NKSNVESN 546



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 3/180 (1%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQ-FGD-DIHVQNTLVHMYGSCEGGIELGR 66
           + F     L+ C   GD   G++VHG V++    G  D+   N L++MYG   G +   R
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKL-GPLASAR 116

Query: 67  KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
           ++FD M ER+ VS+  ++  +A+ G    A  LFR+++  G   ++  + T+L     + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIA 186
           A  +   V S   K   + +  + + LID ++ C  V  A  +F  +  +  V WT++++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 9   NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
           N+F    +LK    +    L   VH    K     +  V + L+  Y  C   +     V
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSL-VSDAEHV 219

Query: 69  FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
           F+ +  +D+V W+AM+  Y+      +A   FR       C    +++ +  +C   G  
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENA---FR-------CAQSCSLLAI--SCARQG-- 265

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
                +     K + +    +  AL+DM+AKCGD+  A   F  +    ++  + +I+  
Sbjct: 266 -----IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRY 320

Query: 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
           A   +  +A  LF  ++ + V P++ +   +L AC++   +D G++
Sbjct: 321 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ 366


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 293/472 (62%), Gaps = 2/472 (0%)

Query: 5    GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
            G+ P+ FT   +L AC+ +  L LGK VHG +++     D+ V  +++ +Y  C G +  
Sbjct: 846  GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC-GELCT 904

Query: 65   GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             + +FD M ++  VSW+ +I GY + G    A+ +FRQM + G+    I+M+ V  AC+ 
Sbjct: 905  VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 964

Query: 125  LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
            L +L +G+   ++  K ++     +  +LIDM+AK G + ++ K+F  +  ++  SW ++
Sbjct: 965  LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 1024

Query: 185  IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
            I G  +HG   EA+ LFEEM   G  PDD+ F+G+L+AC+H GL+ +G  Y D MK+ FG
Sbjct: 1025 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFG 1084

Query: 245  IIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESI 303
            + P ++HY C++DML R+G++ +A   + ++M  EA+  IW++L+S+C     L++ E +
Sbjct: 1085 LKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 1144

Query: 304  TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
              +L   EP    NYVLLS++YA L +WE   K+R+ M++  ++K  G + IEL+ +++ 
Sbjct: 1145 AAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFS 1204

Query: 364  FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
            FV G++     +EI  +   +  K+ K GY P T  V  D++EE+K + L  HSEKLA+ 
Sbjct: 1205 FVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALT 1264

Query: 424  FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
            + L+KT  GT IR+ KNLR+C DCH+A K ISK+  REIVVRD  RFHHFK+
Sbjct: 1265 YGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 1316



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 8/243 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ FTYP V+KACAG+ D+ +G +VHG V+K    +D+ V N LV  YG+  G +    +
Sbjct: 540 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGT-HGFVTDALQ 598

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----ISGVCPDEITMVTVLSACT 123
           +FD M ER+ VSW++MI  ++  G S ++  L  +M          PD  T+VTVL  C 
Sbjct: 599 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 658

Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
               + +GK V  +  K  +++ + L NAL+DM++KCG +  A  +F+  N + +VSW +
Sbjct: 659 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 718

Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMK 240
           ++ G +  G       +  +ML  G  V  D+V  +  +  C H   +   +E +  S+K
Sbjct: 719 MVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLK 778

Query: 241 NDF 243
            +F
Sbjct: 779 QEF 781



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 137/261 (52%), Gaps = 7/261 (2%)

Query: 30   KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
            K +H   LK +F  +  V N  V  Y  C G +   ++VF  +  +   SW+A+IGG+A+
Sbjct: 770  KELHCYSLKQEFVYNELVANAFVASYAKC-GSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 828

Query: 90   LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
                  ++D   QM+ISG+ PD  T+ ++LSAC+ L +L +GK V  FI +  + R + +
Sbjct: 829  SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 888

Query: 150  CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
              +++ ++  CG++     LF +M  +++VSW +VI G   +G    A+ +F +M+  G+
Sbjct: 889  YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 948

Query: 210  PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKE 267
                ++ + +  ACS    +  GRE +  ++K+   ++       C ++DM  ++G + +
Sbjct: 949  QLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQ 1005

Query: 268  AHEFIQKMPIEANPIIWRTLI 288
            + +    +  E +   W  +I
Sbjct: 1006 SSKVFNGLK-EKSTASWNAMI 1025



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+  T   VL  CA   ++ LGK VHG  +K +   ++ + N L+ MY  C G I   + 
Sbjct: 645 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC-GCITNAQM 703

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDL 125
           +F   + ++ VSW+ M+GG++  G +    D+ RQM   G  V  DE+T++  +  C   
Sbjct: 704 IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE 763

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L   K +  +  KQ    +  + NA +  +AKCG +  A ++F  +  +T+ SW ++I
Sbjct: 764 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 823

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
            G A       ++    +M  +G+ PD      LLSACS    +  G+E
Sbjct: 824 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 872



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 12/247 (4%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+ YG+     +   V  AC+ +  L LG+  H   LK    DD  +  +L+ MY    G
Sbjct: 943  MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK-NG 1001

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             I    KVF+ + E+ + SW+AMI GY   GL+ +AI LF +MQ +G  PD++T + VL+
Sbjct: 1002 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 1061

Query: 121  ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTI 178
            AC   G +  G ++++       +  ++     +IDM  + G +DKAL++    M+    
Sbjct: 1062 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 1121

Query: 179  VS-WTSVIAGLAMHGRGLE-----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
            V  W S+++   +H + LE     A  LFE  LE   P + V    L +       V K 
Sbjct: 1122 VGIWKSLLSSCRIH-QNLEMGEKVAAKLFE--LEPEKPENYVLLSNLYAGLGKWEDVRKV 1178

Query: 233  REYFDSM 239
            R+  + M
Sbjct: 1179 RQRMNEM 1185



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 16/320 (5%)

Query: 15  FVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
            +L+A     D+ +G+ +H  V    +  +D  +   ++ MY  C G  +  R VFD + 
Sbjct: 444 LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMC-GSPDDSRFVFDALR 502

Query: 74  ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
            ++   W+A+I  Y+R  L  + ++ F +M   + + PD  T   V+ AC  +  + +G 
Sbjct: 503 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 562

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
            V   + K  +   V + NAL+  +   G V  AL+LF  M  R +VSW S+I   + +G
Sbjct: 563 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 622

Query: 193 RGLEAVALFEEMLE----AGVPPDDVAFVGLLSACSH---CGLVDKGREYFDSMKNDFGI 245
              E+  L  EM+E        PD    V +L  C+     GL      +   ++ D  +
Sbjct: 623 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 682

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +        ++DM  + G +  A + I KM    N + W T++    A G+      + +
Sbjct: 683 VLN----NALMDMYSKCGCITNA-QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLR 737

Query: 306 RLI-GNEPMHESNYVLLSHI 324
           +++ G E +      +L+ +
Sbjct: 738 QMLAGGEDVKADEVTILNAV 757


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 289/474 (60%), Gaps = 2/474 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ P++FT+  +L+AC   G+   GK +HG VLK  F DD ++ + L+ +Y S  G
Sbjct: 304 MQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLY-SDSG 362

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E G + F  + ++D V+W++MI G  +  L   A+ LF++    G+ PD  TM +V++
Sbjct: 363 CMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMN 422

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L     G+ ++    K   NR   + N+ I M A+ GDVD   + F+ M  R +VS
Sbjct: 423 ACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVS 482

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W++VI+  A HG   +A+ +F EM+ A V P++V F+ +L+ACSH GLVD G  Y++ MK
Sbjct: 483 WSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMK 542

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           N++G+ P I+H  C+VD+L R+GR+ +A  FI+      + ++WR+L+++C   G+++  
Sbjct: 543 NEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERG 602

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           + +  +++  EP   ++YV+L ++Y         +K R++M +RG+KK PG + IEL + 
Sbjct: 603 QLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSG 662

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ FV GDKSH +S  IY+ L EM  K++K       S     I+  + ++ +  HSEK+
Sbjct: 663 VHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNASTGSDGISSSE-QNLVGCHSEKI 721

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           A+AF ++  P   PIR++KNLRVC DCHS  K IS   NREI++RD  RFHHF+
Sbjct: 722 AVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHFR 775



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 156/297 (52%), Gaps = 15/297 (5%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  ++FTY   L AC+   DL  GK+VH   +    G+ + + N+L  MY SC G +  
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASC-GEMGE 156

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC-- 122
            R+VFD   E D VSW++++ GY R G   + + +F  M   G+  +   + +++  C  
Sbjct: 157 ARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCAS 216

Query: 123 -TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
            +D+G   + + V   + K  ++  + L +A+IDM+AK G +  A+ LF+S+    ++ +
Sbjct: 217 GSDVGR-HIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVF 275

Query: 182 TSVIAGL----AMHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
            ++IAG     A  G+ +  EA++L+ EM   G+ P +  F  +L AC+  G    G++ 
Sbjct: 276 NAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQI 335

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
           +   +K+ F     I     ++D+   SG +++ +   + +P + + + W ++IS C
Sbjct: 336 HGQVLKHSFHDDDYIG--SALIDLYSDSGCMEDGYRCFRSLP-KQDIVTWTSMISGC 389



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 159/335 (47%), Gaps = 38/335 (11%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDL--NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M  +G+  N F    ++K CA   D+  ++ ++VHG V+K     D+ + + ++ MY   
Sbjct: 195 MCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAK- 253

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYAR----LG--LSTDAIDLFRQMQISGVCPDE 112
            G +     +F  + + + + ++AMI G+ R    +G  +S +A+ L+ +MQ  G+ P E
Sbjct: 254 RGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSE 313

Query: 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172
            T  ++L AC   G    GK +   + K   +    + +ALID+++  G ++   + FRS
Sbjct: 314 FTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRS 373

Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-------- 224
           +  + IV+WTS+I+G   +    +A+ LF+E +  G+ PD      +++AC+        
Sbjct: 374 LPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTG 433

Query: 225 ---HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281
               C  +  G   F +M N F            + M  RSG V       Q+M    + 
Sbjct: 434 EQIQCLAIKYGFNRFTAMGNSF------------IHMCARSGDVDAVTRRFQEME-SRDV 480

Query: 282 IIWRTLISA----CCARGELKL-AESITKRLIGNE 311
           + W  +IS+     CAR  L++  E +  ++  NE
Sbjct: 481 VSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNE 515



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 141/301 (46%), Gaps = 12/301 (3%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL-GRKVFDE 71
           Y  +L++C  +  +    +VH  + +      + ++N+L+  Y     G  L   ++ DE
Sbjct: 5   YLDLLRSCTALPHV---AAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDE 61

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEV 130
           M  R++VS++ +I  Y+R GL   A++ F + + + G+  D  T    L+AC+    L  
Sbjct: 62  MPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRT 121

Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
           GK V +      +   V L N+L  M+A CG++ +A ++F +      VSW S+++G   
Sbjct: 122 GKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVR 181

Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN---DFGIIP 247
            G   E + +F  M   G+  +  A   ++  C+     D GR   +++       G+  
Sbjct: 182 AGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGS--DVGRHIAEAVHGCVVKAGLDA 239

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
            +     M+DM  + G +  A    + +P + N I++  +I+  C R E  + + +++  
Sbjct: 240 DLFLASAMIDMYAKRGALTNAVALFKSVP-DPNVIVFNAMIAGFC-RDEAAVGKEVSREA 297

Query: 308 I 308
           +
Sbjct: 298 L 298


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/473 (41%), Positives = 279/473 (58%), Gaps = 3/473 (0%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G  PN  T+   L ACAG   L LG+ +HG VL+  F  D+ V N L+  YG C   +  
Sbjct: 204 GWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQ-VGC 262

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
              +F  +S+ + VSW +MI  Y +      A  +F + +  G+ P +  + +VLSAC  
Sbjct: 263 SEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAG 322

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L  LEVGK V +   K  V  ++ + +AL+DM+ KCG ++ A + F  M  R +V+W ++
Sbjct: 323 LSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAM 382

Query: 185 IAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           I G A  G+   AV LF+EM      V P+ V FV +LSACS  G V+ G E F+SM+  
Sbjct: 383 IGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGR 442

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           +GI P  EHY C+VD+L R+G V++A++FI+KMPI     +W  L+ A    G+ +L + 
Sbjct: 443 YGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKV 502

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
               L   +P+   N+VLLS+++A   RWE+ T +R+ M   G+KK  G + I   N ++
Sbjct: 503 AADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVH 562

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F   D SH ++ EI  ML ++  +M+ AGY+P TS  L D+ EE+K   +  HSEK+A+
Sbjct: 563 VFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIAL 622

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AF L+  P G PIRI KNLR+C DCHSA KFIS I  REI+VRD + FH F+D
Sbjct: 623 AFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRD 675



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 3/314 (0%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PN FT+P   KA   +    +GK VH   +K     D+ V  +   MY S  G  E  
Sbjct: 104 IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMY-SKAGLTEEA 162

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           RK+FDEM ER+  +W+A +      G   DA+  F + +  G  P+ IT    L+AC   
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGA 222

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
             L +G+ +  F+ +      V + N LID + KC  V  +  +F  ++    VSW S+I
Sbjct: 223 SYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMI 282

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
                +    +A  +F    + G+ P D     +LSAC+   +++ G+    ++     +
Sbjct: 283 VSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKS-VHTLAVKACV 341

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
           +  I     +VDM  + G +++A     +MP E N + W  +I     +G+  +A ++  
Sbjct: 342 VGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFD 400

Query: 306 RLIGNEPMHESNYV 319
            +         NYV
Sbjct: 401 EMTCGSHRVAPNYV 414



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 28  LGKSVHGAVLK-FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGG 86
           LG++ H  ++K         + N LV+MY   +      + +      R  V+W+A+I G
Sbjct: 24  LGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRP-NSAQLLLSLTPNRSVVTWTALIAG 82

Query: 87  YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVN 144
             + G  T A+  F  M+   + P++ T      A   L +  VGK V +   K  Q+ +
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
             VG C+A  DM++K G  ++A K+F  M  R I +W + ++   + GR  +A+  F E 
Sbjct: 143 VFVG-CSAF-DMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEF 200

Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
              G  P+ + F   L+AC+    +  GR+
Sbjct: 201 RHEGWEPNLITFCAFLNACAGASYLRLGRQ 230


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/507 (37%), Positives = 292/507 (57%), Gaps = 38/507 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   VSP  FT+  +      + + +LG  +H     F F +D++V NT++HMY    G
Sbjct: 103 MLNNNVSPVSFTFSALFSL---LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKF-G 158

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLG----------------------------- 91
            ++  RKVFDEM  RD V+W+ +I  YAR G                             
Sbjct: 159 VLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQ 218

Query: 92  --LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR--SV 147
             +   A+  FR+M+ +GV  DEIT+V  +SAC  LG      W+    E        +V
Sbjct: 219 NAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNV 278

Query: 148 GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
            + +ALIDM++KCG+V++A  +F+ M    + S++S+I G A+HGR   A+ LF EMLE 
Sbjct: 279 FVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLEN 338

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
           G+ P+ V FVGL +ACSH G+V++G++ F +MK  +G+ P  +HY CM D+L R+G +++
Sbjct: 339 GIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEK 398

Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327
           A + +Q MP+E N  +W  L+ A    G   +AE  ++ L   EP +  NY+LLS  YA 
Sbjct: 399 ALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYAL 458

Query: 328 LLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE-IYEFVCGDKSHHQSKEIYEMLDEMGR 386
             +W+  +++R++M ++ ++K PG + +E  N  I+EF  GD  H +  EI + LD++ +
Sbjct: 459 AAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQ 518

Query: 387 KMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCND 446
           ++K  GY P  + V  DI++E K   L  HSEKLA+A+ LL T  G+ I+I+KNLR+C D
Sbjct: 519 RLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICED 578

Query: 447 CHSATKFISKIYNREIVVRDRHRFHHF 473
           CH      SK+  R+I+VRD  RFHHF
Sbjct: 579 CHIVMCGASKLTGRKIIVRDNMRFHHF 605


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/416 (43%), Positives = 257/416 (61%)

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
           G + L  ++F          W+AMI  Y + G S  AI LF ++    + P+ +T++ VL
Sbjct: 14  GNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVL 73

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
            AC  L AL  GK V +      V+  V +  A++DM++KCG +D+A++ F  +     V
Sbjct: 74  DACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTV 133

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SWT+++A  A HG    A+A F+ M E G  P+ V FV LLSACSH GLV++GR+YFD M
Sbjct: 134 SWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLM 193

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
              +GI P  +HY CMVD+L R+G + EA +F+ +MP   +  + ++L+SAC +  ++  
Sbjct: 194 TARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDR 253

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            E I KR++ +       YV+L+ IY    +WE+  +IR +M +RG++K PG + IE++ 
Sbjct: 254 GERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIEVEG 313

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            ++EFV GD SH Q   I   L E+   MK+AGYVP TS VL D+ EE+KE  L  HSEK
Sbjct: 314 RVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKEQVLLWHSEK 373

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           LA+AF LL TP G+PIR++KNLRVC DCH A K IS I  R IV RD  RFHHF++
Sbjct: 374 LAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFEN 429



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 2/176 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L   + PN  T   VL ACA +  L  GK VH          ++ V   +V MY  C G
Sbjct: 57  LLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKC-G 115

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   + F  +   D+VSW+AM+  +A+ G    A+  F++MQ  G  P+ +T V +LS
Sbjct: 116 CLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLS 175

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           AC+  G +E G K+ +    +  +         ++D+  + G +D+A      M G
Sbjct: 176 ACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPG 231



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 4/172 (2%)

Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
           ++  FAK G++  A ++F   +   I  W ++IA    HG   +A+ LF+E+L   + P+
Sbjct: 6   VLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPN 65

Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
            V  + +L AC+    +  G+    ++  D G+  ++     +VDM  + G + EA E  
Sbjct: 66  SVTLMEVLDACASLAALRDGKR-VHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAF 124

Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324
            ++    + + W  +++A    G +  A +  +R+   E  H+ NYV   H+
Sbjct: 125 ARIE-RHDTVSWTAMLAAFAQHGHIDRALATFQRM--QEQGHKPNYVTFVHL 173


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 268/413 (64%), Gaps = 3/413 (0%)

Query: 63  ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
            + + VF++M  RD V+W+ MIGGY R     +A+ LFR M  S V PD+ T  +V++ C
Sbjct: 93  RVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGC 152

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             LGAL+  +WV   + ++ +  +  L +ALIDM++KCG +  A ++F  +    +  W 
Sbjct: 153 AKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWN 212

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I+GLA+HG  L+A+ +F +M    V PD + F+G+L+ACSHCGLV +GR+YFD M++ 
Sbjct: 213 AMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSR 272

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           + + P IEHYG MVD+L R+G ++EA   I+ MP+E + +IWR L+ AC    + +L E+
Sbjct: 273 YSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEA 332

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
               +     +   +YVLLS+IY    RW+    + E+M K+G+ K+ G +  E    ++
Sbjct: 333 AMANI---SRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLH 389

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  GD+SH +++ IY+ML+ + ++ K AGYVPTT  V +D++EE+KE  L  HSEKLA+
Sbjct: 390 PFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLAL 449

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ +LKT  G  +RI KNLR+C DCHS  K +S++ +R I+VRDR RFH F++
Sbjct: 450 AYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFEN 502



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M +  V P+K+T+  V+  CA +G L   + VH  +++ +   +  + + L+ MY  C G
Sbjct: 133 MNKSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKC-G 191

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I+  +++FD +   +   W+AMI G A  GL+ DAI +F +M++  V PD IT + +L+
Sbjct: 192 KIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILT 251

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G ++ G K+ +    +  V   +    A++D+  + G +++A  + +SM     +
Sbjct: 252 ACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDV 311

Query: 179 VSWTSVIAG 187
           V W +++  
Sbjct: 312 VIWRALLGA 320



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
           N +ID   +  +   A  +F  M  R +V+W ++I G     R  EA+ LF  M ++ V 
Sbjct: 80  NLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE 139

Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
           PD   F  +++ C+  G + K  ++   +  +  I         ++DM  + G+++ A E
Sbjct: 140 PDKYTFASVINGCAKLGAL-KHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKE 198

Query: 271 FIQKMPIEANPIIWRTLISACCARG 295
               +    N  IW  +IS     G
Sbjct: 199 IFDGVQ-RNNVCIWNAMISGLAVHG 222


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/475 (37%), Positives = 280/475 (58%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G       Y  +L     + D+++GK +H  ++      +  + N L+ MY  C G
Sbjct: 526 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC-G 584

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +  F   SE+ ++SW+A+I GY + G   +A+ LF  M+ +G+ PD  T  +++ 
Sbjct: 585 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 644

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A + L  + +G+ + S++ +     SV   + L+DM+AKCG +D+AL+ F  M  R  +S
Sbjct: 645 ASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS 704

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W +VI+  A +G    A+ +FE ML  G  PD V F+ +L+ACSH GL D+  +YF  MK
Sbjct: 705 WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMK 764

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + + I P  EHY C++D L R G   +  + + +MP +A+PIIW +++ +C   G  +LA
Sbjct: 765 HQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 824

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
                +L G EP   + YV+LS+IYA+  +WE    ++++M  RG++K  G + +E+  +
Sbjct: 825 RVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 884

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           IY F   D +     EI + LD + ++M K GY P  +  L  ++ E K ++L  HSE+L
Sbjct: 885 IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 944

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           AIAFAL+ TP GTPIRI+KNL  C DCH+  K ISKI NR+I+VRD  RFHHFKD
Sbjct: 945 AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKD 999



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 134/257 (52%), Gaps = 3/257 (1%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           ++ V N+L+  Y  C+   ++ R++FDEM ERD+VS++ +I  YA    +   + LFR+M
Sbjct: 468 NVFVNNSLLDFYSKCDCLDDM-RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM 526

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
           Q  G     +   T+LS    L  + +GK + + +    +     L NALIDM++KCG +
Sbjct: 527 QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML 586

Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
           D A   F + + ++ +SWT++I G   +G+  EA+ LF +M  AG+ PD   F  ++ A 
Sbjct: 587 DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 646

Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
           S   ++  GR+    +    G    +     +VDM  + G + EA     +MP E N I 
Sbjct: 647 SSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSIS 704

Query: 284 WRTLISACCARGELKLA 300
           W  +ISA    GE K A
Sbjct: 705 WNAVISAYAHYGEAKNA 721



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 30/299 (10%)

Query: 1   MLEYGVSPNKFTYPFVLK--ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML  GV P++ T   VL    C          S+H   +KF     + V NTL+  Y  C
Sbjct: 345 MLGEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAY--C 395

Query: 59  EGG-IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
           + G +   R+VF EM ++D+V+++AM+ G ++ GL T A+ LF  M+ +G     + ++ 
Sbjct: 396 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLL- 454

Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
                         ++  S      V  +V + N+L+D ++KC  +D   +LF  M  R 
Sbjct: 455 --------------QYSHSRSRSTSV-LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 499

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            VS+  +IA  A +      + LF EM + G     + +  +LS       V  G++   
Sbjct: 500 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 559

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
            +    G+  +      ++DM  + G +  A         E + I W  LI+     G+
Sbjct: 560 QLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQ 616



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 29/217 (13%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           +I   N ++  Y S  G +   + +F     R++ +W+ M+  +A  G ++DA+ LFR M
Sbjct: 287 NIFSLNLILSAYSS-SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 345

Query: 104 QISGVCPDEITMVTVLS--ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161
              GV PD +T+ TVL+   CT          +  F  K  ++  V +CN L+D + K G
Sbjct: 346 LGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKHG 398

Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV---- 217
            +  A ++F  M+ +  V++ +++ G +  G   +A+ LF  M  AG     +  +    
Sbjct: 399 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSH 458

Query: 218 ---------------GLLSACSHCGLVDKGREYFDSM 239
                           LL   S C  +D  R  FD M
Sbjct: 459 SRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 495



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
           QM ++++   N ++  ++  GD+  A  LF S   R   +WT ++   A  GR  +A++L
Sbjct: 282 QMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSL 341

Query: 201 FEEMLEAGVPPDDVAFVGLLS--ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
           F  ML  GV PD V    +L+   C+   L              FG+   +     ++D 
Sbjct: 342 FRAMLGEGVIPDRVTVTTVLNLPGCTVPSL--------HPFAIKFGLDTHVFVCNTLLDA 393

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG----ELKLAESITKRLIGNEPMH 314
            C+ G +  A     +M  + + + +  ++  C   G     L+L  ++ +      P+H
Sbjct: 394 YCKHGLLAAARRVFLEMH-DKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLH 452

Query: 315 ESNY 318
              Y
Sbjct: 453 LLQY 456


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/469 (40%), Positives = 287/469 (61%), Gaps = 36/469 (7%)

Query: 42  GDDIH--VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWS------------------ 81
           G D H  V+N+L+  Y +C G +   RKVFDEM E+D +SW+                  
Sbjct: 172 GFDRHRFVENSLIGAYVAC-GDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEV 230

Query: 82  -------------AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
                        AM+ GYA+  +   A+++F +M   G+  DE+++   +SAC  LGAL
Sbjct: 231 FGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGAL 290

Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
               WV+   E+     +V + + L+DM+AKCG +D+A K+F  M  + + +++S+IAGL
Sbjct: 291 RRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGL 350

Query: 189 AMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
           A HGR  EA+ALF+EM+  A V P+ V F+G+L+ACSH G+V +GR YF  MK+ +GI+P
Sbjct: 351 ASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMP 410

Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
             +HY CMVD+L R+G V EA + ++ M +  +  +W  L+ AC   G+ ++A+ + + L
Sbjct: 411 SADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHL 470

Query: 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE-LDNEIYEFVC 366
              EP    NYVLLS+I A   +WE+ +K+R +M K+ +KK P  +L E  D  +++F  
Sbjct: 471 FKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFA 530

Query: 367 GDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426
           GD +H ++ EI + L E+  K+K  GYVP  S ++ D+N+E+KE  L  HSEKLA++F L
Sbjct: 531 GDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGL 590

Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           L    G  IRI+KNLR+C+DCH   + +S++ + EI+VRD  RFHHFK+
Sbjct: 591 LTLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKN 639



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G+  ++ +    + ACA +G L     V     +  FG+++ V + LV MY  C G
Sbjct: 265 MAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKC-G 323

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
            I+   KVF  M E++  ++S+MI G A  G +++AI LF++M   + V P+ +T + VL
Sbjct: 324 LIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVL 383

Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           +AC+  G +  G+ +     +K  +  S      ++D+  + G VD+AL L RSM+    
Sbjct: 384 TACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPH 443

Query: 179 VS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
              W +++    +HG+   A  + E + +  + P+ +    LLS
Sbjct: 444 GGVWGALLGACRIHGKSEIAKVVAEHLFK--LEPESIGNYVLLS 485


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 284/475 (59%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G   N+ T   VLK+ A +  ++  + VH    K  F  D HV N L+  Y  C+ 
Sbjct: 395 MRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDC 454

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    +VF++    D +++++MI   ++     DAI LF +M   G+ PD   + ++L+
Sbjct: 455 -LNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLN 513

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L A E GK V + + K+     V   NAL+  +AKCG ++ A   F  +  + +VS
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVS 573

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G  A+ +F  M++  + P+ +    +L AC+H GLVD+ + YF+SMK
Sbjct: 574 WSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI    EHY CM+D+L R+G++ +A E +  MP + N  +W  L++A     + +L 
Sbjct: 634 EMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELG 693

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
               ++L   EP     +VLL++ YA    W+   K+R++M    +KK P  + +EL ++
Sbjct: 694 RLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDK 753

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GDKSH ++++IY  LDE+G  M KAGYVP     L D+++ +KE  L+ HSE+L
Sbjct: 754 VHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERL 813

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+ TP G PIR+ KNLR+C DCH+A KFIS I +REI++RD +RFHHF+D
Sbjct: 814 AVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRD 868



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 7/308 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V  N+F  P VLK CA   D   G  +H   +    G DI V N LV MYG   G
Sbjct: 94  MRSCSVRCNEFVLPVVLK-CAP--DAGFGTQLHALAMATGLGGDIFVANALVAMYGGF-G 149

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R VFDE   ER++VSW+ ++  Y +    + A+ +F +M   GV P+E     V+
Sbjct: 150 FVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVV 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    LE G+ V + + +   ++ V   NAL+DM++K GD+  A  +F  +    +V
Sbjct: 210 NACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVV 269

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW + I+G  +HG    A+ L  +M  +G+ P+      +L AC+  G  + GR+    M
Sbjct: 270 SWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFM 329

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
                       +G +VDM  + G + +A +    +P + + ++W  LIS C    +   
Sbjct: 330 VKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGCSHGAQHAE 387

Query: 300 AESITKRL 307
           A S+  R+
Sbjct: 388 ALSLFCRM 395



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 5/309 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN FT   +LKACAG G  NLG+ +HG ++K     D ++   LV MY    G
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAK-HG 352

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++  +KVFD + +RD V W+A+I G +      +A+ LF +M+  G   +  T+  VL 
Sbjct: 353 LLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLK 412

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           +   L A+   + V +  EK        + N LID + KC  ++ A ++F       I++
Sbjct: 413 STASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIA 472

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
           +TS+I  L+    G +A+ LF EML  G+ PD      LL+AC+     ++G++ +   +
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
           K  F  +  +     +V    + G +++A      +P E   + W  +I      G  K 
Sbjct: 533 KRQF--MSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKR 589

Query: 300 AESITKRLI 308
           A  +  R++
Sbjct: 590 ALDVFHRMV 598



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 10/348 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+F +  V+ AC G  DL  G+ VH  V++  +  D+   N LV MY    G
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKL-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I +   VF ++ E D VSW+A I G    G    A++L  QM+ SG+ P+  T+ ++L 
Sbjct: 252 DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC   GA  +G+ +  F+ K   +    +   L+DM+AK G +D A K+F  +  R +V 
Sbjct: 312 ACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I+G +   +  EA++LF  M + G   +      +L + +    +   R+   ++ 
Sbjct: 372 WNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQ-VHALA 430

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC--CARGE-- 296
              G +        ++D   +   +  A+   +K     + I + ++I+A   C  GE  
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG-SYDIIAFTSMITALSQCDHGEDA 489

Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
           +KL   + ++ +  +P   S+   L +  A L  +E+  ++   + KR
Sbjct: 490 IKLFMEMLRKGLDPDPFVLSS---LLNACASLSAYEQGKQVHAHLIKR 534



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 126/282 (44%), Gaps = 9/282 (3%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +L   A    L  G  +H  +LK   G     +N L+  Y  C       R+VFDE+ + 
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKS--GLFAVFRNHLLSFYSKCRLPGS-ARRVFDEIPDP 66

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
             VSWS+++  Y+   +  DA+  FR M+   V  +E  +  VL    D G    G  + 
Sbjct: 67  CHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLH 123

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRG 194
           +      +   + + NAL+ M+   G VD+A  +F      R  VSW  +++    + R 
Sbjct: 124 ALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRC 183

Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
             AV +F EM+  GV P++  F  +++AC+    ++ GR+   +M    G    +     
Sbjct: 184 SHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFTANA 242

Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
           +VDM  + G ++ A     K+P E + + W   IS C   G 
Sbjct: 243 LVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGH 283


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 283/475 (59%), Gaps = 1/475 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M + G   N+ T   VLK+ A +  ++    VH    K  F  D HV N L+  Y  C  
Sbjct: 397 MRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC 456

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +    KVF+E S  + +++++MI   ++     DAI LF +M   G+ PD   + ++L+
Sbjct: 457 -LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLN 515

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC  L A E GK V + + K+     V   NAL+  +AKCG ++ A   F  +  + +VS
Sbjct: 516 ACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVS 575

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W+++I GLA HG G  A+ +F  M++  + P+ +    +L AC+H GLVD+ + YF SMK
Sbjct: 576 WSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMK 635

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             FGI    EHY CM+D+L R+G++ +A E +  MP EAN  +W  L++A     + +L 
Sbjct: 636 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELG 695

Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
           +   ++L   EP     +VLL++ YA    W++  K+R++M    +KK P  + +EL + 
Sbjct: 696 KLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDR 755

Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
           ++ F+ GDKSH ++++IY  L+E+G  M KAGYVP     L D+++ +KE  L+ HSE+L
Sbjct: 756 VHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERL 815

Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+AFAL+ TP G PIR+ KNLR+C DCH A KFISKI +REI++RD +RFHHF D
Sbjct: 816 AVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSD 870



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 152/302 (50%), Gaps = 17/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N+F  P VLK CA   D  LG  VH   +      DI V N LV MYG   G
Sbjct: 94  MRARGVRCNEFALPIVLK-CAP--DAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGF-G 149

Query: 61  GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            ++  R+VFDE + +R++VSW+ M+  + +    +DA++LF +M  SGV P+E     V+
Sbjct: 150 FVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVV 209

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           +ACT    LE G+ V + + +   ++ V   NAL+DM++K GD+  A  +F  +    +V
Sbjct: 210 NACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVV 269

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW + I+G  +HG    A+ L  +M  +G+ P+      +L A         G   F   
Sbjct: 270 SWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA-----CAGAGAGAFALG 324

Query: 240 KNDFGIIPKI-----EHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           +   G + K      ++ G  +VDM  + G + +A +  + +P   + ++W  LIS C  
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGCSH 383

Query: 294 RG 295
            G
Sbjct: 384 GG 385



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 12/350 (3%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV PN+F +  V+ AC G  DL  G+ VH  V++  +  D+   N LV MY    G
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKL-G 251

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL- 119
            I +   VF ++ + D VSW+A I G    G    A++L  QM+ SG+ P+  T+ ++L 
Sbjct: 252 DIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 120 -SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
             A    GA  +G+ +  F+ K   +    +  AL+DM+AK G +D A K+F  +  + +
Sbjct: 312 ACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDL 371

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           + W ++I+G +  G   E+++LF  M + G   +      +L + +    +    +   +
Sbjct: 372 LLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQ-VHA 430

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC--CARGE 296
           +    G +        ++D   +   ++ A++  ++   + N I + ++I+A   C  GE
Sbjct: 431 LAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSD-NIIAFTSMITALSQCDHGE 489

Query: 297 --LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344
             +KL   + ++ +  +P   S+   L +  A L  +E+  ++   + KR
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSS---LLNACASLSAYEQGKQVHAHLIKR 536



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 148/311 (47%), Gaps = 7/311 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLG--KSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M   G+ PN FT   +LKACAG G       + +HG ++K     D ++   LV MY   
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK- 352

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G ++  RKVF+ +  +D + W+A+I G +  G   +++ LF +M+  G   +  T+  V
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           L +   L A+     V +  EK        + N LID + KC  +  A K+F   +   I
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNI 472

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFD 237
           +++TS+I  L+    G +A+ LF EML  G+ PD      LL+AC+     ++G++ +  
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
            +K  F  +  +     +V    + G +++A      +P +   + W  +I      G  
Sbjct: 533 LIKRKF--MTDVFAGNALVYTYAKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHG 589

Query: 298 KLAESITKRLI 308
           K A  + +R++
Sbjct: 590 KRALDVFRRMV 600



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHV-QNTLVHMYGSCE--GGIELGRKVFDEM 72
           +L   A    L LG  +H  +LK      +H  +N L+  Y  C   G     R+VFDE 
Sbjct: 10  LLTRYAATQSLFLGAHIHAHLLKSGL---LHAFRNHLLSFYSKCRLPGS---ARRVFDET 63

Query: 73  SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
            +   VSWS+++  Y+   L  +A+  FR M+  GV  +E  +  VL    D G   +G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGV 120

Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTIVSWTSVIAGLAMH 191
            V +      ++  + + NAL+ M+   G VD+A ++F  +   R  VSW  +++    +
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180

Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251
            R  +AV LF EM+ +GV P++  F  +++AC+    ++ GR+   +M    G    +  
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRK-VHAMVVRTGYDKDVFT 239

Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
              +VDM  + G +  A     K+P + + + W   IS C   G
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISGCVLHG 282


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/496 (38%), Positives = 299/496 (60%), Gaps = 39/496 (7%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           P+ F +  ++KACA +G ++ G+ VH   +  ++ +D  V+++LV MY  C G +   + 
Sbjct: 40  PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKC-GLLNSAKA 98

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           VFD +  ++++SW+AM+ GYA+ G   +A++LFR + +  +     +   ++S     G 
Sbjct: 99  VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNL----YSWTALIS-----GF 149

Query: 128 LEVGKWVESF-------------IEKQMVNRSVGLC--------------NALIDMFAKC 160
           ++ GK +E+F             ++  +++  VG C              NALIDM+AKC
Sbjct: 150 VQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKC 209

Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
            DV  A  +F  M  R +VSWTS+I G+A HG+  +A+AL+++M+  GV P++V FVGL+
Sbjct: 210 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 269

Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280
            ACSH G V+KGRE F SM  D+GI P ++HY C++D+L RSG + EA   I  MP   +
Sbjct: 270 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 329

Query: 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIRE 339
              W  L+SAC  +G  ++   I   L+ +  + + S Y+LLS+IYA    W K ++ R 
Sbjct: 330 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARR 389

Query: 340 VMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTS 398
            + +  ++K PG + +E+  E   F  G+ SH   ++I+ +L ++  +M+ + GYVP TS
Sbjct: 390 KLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTS 449

Query: 399 EVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIY 458
            +L D++E++KE  L  HSE+ A+A+ LLK  PGTPIRIVKNLRVC DCH   K IS+I 
Sbjct: 450 WILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT 509

Query: 459 NREIVVRDRHRFHHFK 474
            REI+VRD  R+HHFK
Sbjct: 510 EREIIVRDATRYHHFK 525



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 56/291 (19%)

Query: 72  MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEV 130
           M  RD ++W++++    +  LS   + +F  +  S    PD+     ++ AC +LG+++ 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 131 GKWVE-SFIEKQMVNRSVGLCNALIDMFAKCGDVD------------------------- 164
           G+ V   FI  +  N  V + ++L+DM+AKCG ++                         
Sbjct: 61  GRQVHCHFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYA 119

Query: 165 ------KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFV 217
                 +AL+LFR +  + + SWT++I+G    G+GLEA ++F EM    V   D +   
Sbjct: 120 KSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLS 179

Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
            ++ AC++      GR+                H   ++DM  +   V  A +   +M  
Sbjct: 180 SIVGACANLAASIAGRQV---------------HGNALIDMYAKCSDVIAAKDIFSRMR- 223

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
             + + W +LI      G+ + A ++   ++  G +P +E  +V L  IYA
Sbjct: 224 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP-NEVTFVGL--IYA 271


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/501 (37%), Positives = 294/501 (58%), Gaps = 48/501 (9%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------ 58
            V P++     VL AC  + D +LG+SVH  ++ +    D  + N L+ +Y  C      
Sbjct: 363 NVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEA 422

Query: 59  ------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
                                    GG++  R  F+++ E+D VSW+ M+  Y +  L  
Sbjct: 423 LRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFN 482

Query: 95  DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
           ++ ++F +MQ S V PD+ T++++LS+C  +GAL  G WV  +IEK  +     L  ALI
Sbjct: 483 ESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALI 542

Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
           DM+ KCG V+ A ++F  +  + +  WT+++A  AM G+ LEA+ L+ EM E GV PD V
Sbjct: 543 DMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHV 602

Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
            F+ LL+ACSH GLVD+G +YF+ +++ + IIP I HYGCMVD+L R G ++E  +FI++
Sbjct: 603 TFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIER 662

Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
           MPIE +  IW +L+ AC +   ++LAE   K+LI  +P +   +VLLS+IYA   RW+  
Sbjct: 663 MPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDV 722

Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394
           +K+R  + + G+ K PG T+IE +  ++EFV    S+  S +I  ML ++ R++      
Sbjct: 723 SKVRTKLHETGVPKQPGFTMIEQNGVVHEFV---ASNLVSADILCMLQDIERRL------ 773

Query: 395 PTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFI 454
                    + +++  D  ++HSE+LA+AF L+     +PIR+V ++R+C DCHS  K I
Sbjct: 774 ---------LVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLI 824

Query: 455 SKIYNREIVVRDRHRFHHFKD 475
           S+ Y+REIV+RD +RFH F D
Sbjct: 825 SQAYDREIVIRDNYRFHRFTD 845



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 173/353 (49%), Gaps = 65/353 (18%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M+  GV  +  T+ F++ AC    D+ LG  VHG +LK  FG +  + N L+ +Y  C G
Sbjct: 124 MVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKC-G 182

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            ++   ++F++M+ RD +SW+ MI  Y   G+  +A+DLF +M +SGV PDEITMV+++S
Sbjct: 183 KLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVS 242

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG------------------- 161
            C  L  LE+GK +  +I    +     L N L+DM++KCG                   
Sbjct: 243 TCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDV 302

Query: 162 --------------DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
                          +DKA +LF  MN R++VSWT++++G    G   E++ LF++M   
Sbjct: 303 VLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFE 362

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREY----------------------------FDSM 239
            V PD+VA V +LSAC H    D GR                               D  
Sbjct: 363 NVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEA 422

Query: 240 KNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              F  +P      +  M+D  CRSG V +A +F  K+P E + + W T+++A
Sbjct: 423 LRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIP-EKDIVSWNTMVNA 474



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 165/362 (45%), Gaps = 71/362 (19%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           ML  GV P++ T   ++  CA + DL +GK +H  ++  +      + N LV MY  C  
Sbjct: 225 MLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGK 284

Query: 59  ------------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYA 88
                                            I+  R++FD+M+ER  VSW+ M+ GY 
Sbjct: 285 MDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYV 344

Query: 89  RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
           + G   ++++LF+QM+   V PDE+ +VTVLSAC  L   ++G+ V +FI    +     
Sbjct: 345 QGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGF 404

Query: 149 LCNALIDMFAKC-------------------------------GDVDKALKLFRSMNGRT 177
           L NAL+D++AKC                               G VDKA   F  +  + 
Sbjct: 405 LGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKD 464

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG---RE 234
           IVSW +++     H    E+  +F +M  + V PD    + LLS+C+  G ++ G     
Sbjct: 465 IVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNV 524

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
           Y +  KN+ GI   +     ++DM  + G V+ A+E   ++ IE N  +W  +++A    
Sbjct: 525 YIE--KNEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAME 579

Query: 295 GE 296
           G+
Sbjct: 580 GQ 581



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 142/294 (48%), Gaps = 8/294 (2%)

Query: 16  VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
           +LK+C+ I + +    +H  ++      D  + + ++    S    ++   ++     E 
Sbjct: 41  LLKSCSNIREFS---PIHAHLITANLIHDPEITSQVLAFLLSV-NNLDCAHQILSYSHEP 96

Query: 76  DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
           +S+ W+ ++    + G   + ++ +  M   GV  D  T   ++ AC     +++G  V 
Sbjct: 97  ESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVH 156

Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
             I K    R+  L N L+ +++KCG + +  +LF  M  R ++SW ++I+   + G   
Sbjct: 157 GRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYR 216

Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKNDFGIIPKIEHYGC 254
           EA+ LF+EML +GV PD++  V L+S C+    ++ G R +   + N   I   +    C
Sbjct: 217 EALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL--LNC 274

Query: 255 MVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRL 307
           +VDM  + G++ EAH  + +    E + ++W TL+S      ++  A  +  ++
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKM 328



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 119/232 (51%), Gaps = 4/232 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M    V P+K T   +L +CA +G LN G  V+  + K + G D  +   L+ MYG C G
Sbjct: 491 MQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKC-G 549

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E+  ++F ++ E++   W+AM+  YA  G + +AIDL+ +M+  GV PD +T + +L+
Sbjct: 550 CVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLA 609

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+  G ++ G K+         +  ++     ++D+  + G +++ +K    M     V
Sbjct: 610 ACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDV 669

Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
           S W+S++     H     A   F++++E   P ++ A V L +  +  G  D
Sbjct: 670 SIWSSLMRACRSHHNVELAEQAFKQLIEID-PTNNGAHVLLSNIYADAGRWD 720


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 180/474 (37%), Positives = 284/474 (59%), Gaps = 2/474 (0%)

Query: 1    MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            M+  G+ P+ F     L A AG   L  GKSVHG  ++      + V N L+ MY  C  
Sbjct: 610  MVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRN 669

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +E  R +FD ++ +D +SW+ +IGGY+R     ++  LF  M +    P+ +TM  +L 
Sbjct: 670  -VEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILP 727

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A   + +LE G+ + ++  ++         NAL+DM+ KCG +  A  LF  +  + ++S
Sbjct: 728  AAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLIS 787

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            WT +IAG  MHG G  A+ALFE+M  +G+ PD  +F  +L AC H GL  +GR +F +M+
Sbjct: 788  WTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQ 847

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
             ++ I PK++HY C+VD+L R+G +KEA EFI+ MPIE +  IW +L+  C     +KLA
Sbjct: 848  KEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLA 907

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E +  ++   EP +   YVLL++IYA+  RWE   K++  +  RG+++  G + IE+ ++
Sbjct: 908  EKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSK 967

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ F+  +++H     I E LD++ R+M++ G+ P     L+  ++   ++AL  HS KL
Sbjct: 968  VHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKL 1027

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
            A+AF +L  P G PIR+ KN +VC+ CH A KFISK+ NREI++RD  RFH F+
Sbjct: 1028 AVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFE 1081



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           GVSP+      VLK  + +G L  G+ +HG + K   G    V N L+ +Y  C G +E 
Sbjct: 199 GVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRC-GRMED 257

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             +VFD M  RD++SW++MIGG    G    A+DLF +M   G     +T+++VL AC  
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 125 LGALEVGKWVESFIEK----------QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
           LG   +GK V  +  K          Q       L + L+ M+ KCGD+  A ++F +M+
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377

Query: 175 GRTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS-----ACSHCGL 228
            +  V  W  ++ G A  G   E+++LF +M E G+ PD+ A   LL      +C+  GL
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGL 437

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V  G  Y   +K  FG    + +   ++    +S  + +A     +MP + + I W ++I
Sbjct: 438 VAHG--YI--VKLGFGAQCAVCN--ALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVI 490

Query: 289 SACCARG 295
           S C + G
Sbjct: 491 SGCSSNG 497



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 144/302 (47%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---------FQFG-DDIHVQNT 50
           M   G   +  T   VL ACAG+G   +GK+VHG  +K          Q G DD  + + 
Sbjct: 296 MWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 51  LVHMYGSCEGGIELGRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVC 109
           LV MY  C G +   R+VFD MS + +V  W+ ++GGYA++G   +++ LF QM   G+ 
Sbjct: 356 LVFMYVKC-GDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIA 414

Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169
           PDE  +  +L   T L     G     +I K        +CNALI  +AK   +  A+ +
Sbjct: 415 PDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLV 474

Query: 170 FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229
           F  M  +  +SW SVI+G + +G   EA+ LF  M   G   D V  + +L AC+     
Sbjct: 475 FNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYW 534

Query: 230 DKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
             GR     S+K   G+I +      ++DM       +  ++  + M  + N + W  +I
Sbjct: 535 FAGRVVHGYSVKT--GLIGETSLANALLDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMI 591

Query: 289 SA 290
           ++
Sbjct: 592 TS 593



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E G++P++     +LK    +     G   HG ++K  FG    V N L+  Y     
Sbjct: 408 MHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAK-SN 466

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I     VF+ M  +D++SW+++I G +  GL+++AI+LF +M   G   D +T+++VL 
Sbjct: 467 MIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLP 526

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           AC        G+ V  +  K  +     L NAL+DM++ C D     ++FRSM  + +VS
Sbjct: 527 ACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVS 586

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
           WT++I      G   +   L +EM+  G+ PD  A    L A +    + +G+     ++
Sbjct: 587 WTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTI 646

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           +N  G+   +     +++M  +   V+EA     ++    + I W TLI
Sbjct: 647 RN--GMEKLLPVANALMEMYVKCRNVEEARLIFDRV-TNKDVISWNTLI 692



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 6/314 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G   +  T   VL ACA       G+ VHG  +K     +  + N L+ MY +C  
Sbjct: 509 MWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSD 568

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             +   ++F  M +++ VSW+AMI  Y R GL      L ++M + G+ PD   + + L 
Sbjct: 569 -WQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALH 627

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A     +L+ GK V  +  +  + + + + NAL++M+ KC +V++A  +F  +  + ++S
Sbjct: 628 AFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVIS 687

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
           W ++I G + +    E+ +LF +ML     P+ V    +L A +    +++GRE   +  
Sbjct: 688 WNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGRE-IHAYA 745

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
              G +        +VDM  + G +  A     ++  + N I W  +I+     G  K A
Sbjct: 746 LRRGFLEDSYASNALVDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMHGFGKHA 804

Query: 301 ESITKRLIGN--EP 312
            ++ +++ G+  EP
Sbjct: 805 IALFEQMRGSGIEP 818



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 22/310 (7%)

Query: 12  TYPFVLKACAGIGDLNLGKSVHGAVLKFQF----GDDIHVQNTLVHMYGSCEGGIELGRK 67
           +Y  V++ C     L   K  H  +         G    +   LV  Y  C G +   R 
Sbjct: 99  SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKC-GDLGEART 157

Query: 68  VFDEMSER--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           VFD M  +  D   W++++  YA+ G   +A+ LFRQMQ  GV PD   +  VL   + L
Sbjct: 158 VFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSL 217

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G+L  G+ +   +EK  + ++  + NALI ++++CG ++ A ++F SM+ R  +SW S+I
Sbjct: 218 GSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMI 277

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC--GLVDKGREYFDSMKNDF 243
            G   +G    AV LF +M   G     V  + +L AC+    GL+ K    + S+K+  
Sbjct: 278 GGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY-SVKS-- 334

Query: 244 GIIPKIEHYGCMVD----------MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           G++  ++     +D          M  + G +  A      M  + N  +W  ++     
Sbjct: 335 GLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAK 394

Query: 294 RGELKLAESI 303
            GE + + S+
Sbjct: 395 VGEFEESLSL 404


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 287/475 (60%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V PN+FTY  +LKA   I    L   +H  V+K  +     V   L+  Y S  G
Sbjct: 395 MREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLASY-SKFG 449

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    +F  + ++D V+WSAM+  +A+ G    A  LF +M I G+ P+E T+ +V+ 
Sbjct: 450 STEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVID 509

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC    A ++ G+   +   K   + ++ + +AL+ M+++ G++D A  +F     R +V
Sbjct: 510 ACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLV 569

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG  ++A+  F +M  +G+  D V F+ ++  C+H GLV +G++YFDSM
Sbjct: 570 SWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSM 629

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D  I P +EHY CMVD+  R+G++ E    I+ MP  A  ++WRTL+ AC     ++L
Sbjct: 630 VRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVEL 689

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +    +L+  EP   S YVLLS+IYA   +W+++ ++R++MD R +KK  G + I++ N
Sbjct: 690 GKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKN 749

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ F+  DKSH  S +IY+ L  +  ++K+ GY P TS VL DI E+ KE  L  HSE+
Sbjct: 750 KVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSER 809

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AF L+ TPPGTP++IVKNLRVC DCH   K +S I +REI++RD  RFHHF 
Sbjct: 810 LALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFN 864



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 9/307 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD---IHVQNTLVHMYGSCEGG 61
           GV  +  T   VLKAC  + D  LG+ +H   L  + G D   +    +LV MY  C G 
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLH--CLCVKCGHDRGEVSAGTSLVDMYMKC-GS 150

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  G +VF+ M +++ V+W++++ G A   + ++ + LF +M+  G+ P+  T  +VLSA
Sbjct: 151 VCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSA 210

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
               GAL++G+ V +   K     SV +CN+L++M+AKCG V+ A  +F  M  R +VSW
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW 270

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MK 240
            +++AGL ++   LEA+ LF E            +  ++  C++   +   R+     +K
Sbjct: 271 NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + F +   +     + D   + G + +A           N + W  +IS C   G++ LA
Sbjct: 331 HGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 301 ESITKRL 307
             +  R+
Sbjct: 389 VVLFSRM 395



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN FT+  VL A A  G L+LG+ VH   +KF     + V N+L++MY  C G
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC-G 250

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  + VF+ M  RD VSW+ ++ G        +A+ LF + + +     + T  TV+ 
Sbjct: 251 LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIK 310

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
            C +L  L + + + S + K   + +  +  AL D ++KCG++  AL +F    G R +V
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVV 370

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           SWT++I+G   +G    AV LF  M E  V P++  +  +L A
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 65  GRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            R   DE+  RD+ V  + ++  YAR G+  + +D F   +  GV  D  T+  VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 124 DLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +    +G+ +     K   +R  V    +L+DM+ KCG V + +++F  M  + +V+WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKN 241
           S++ G A      E +ALF  M   G+ P+   F  +LSA +  G +D G R +  S+K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK- 229

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            FG    +     +++M  + G V++A      M    + + W TL++
Sbjct: 230 -FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVSWNTLMA 275


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/497 (40%), Positives = 290/497 (58%), Gaps = 37/497 (7%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCE 59
           +L  G  P+   Y   L +CA   D      +H    K  F      V+  LVH Y  C 
Sbjct: 69  LLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRLVHAYAVC- 127

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD------------------------ 95
           G +   R+VFD  ++ D V+W+ ++ GYA+ G   D                        
Sbjct: 128 GMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTVLSLC 187

Query: 96  --------AIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
                   AI +FR+M  S  C PD +T+V+V+SA   LGAL  G W  +++ ++ V   
Sbjct: 188 VVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEVE 247

Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
             L +ALI+M++KCG ++ A+ +F ++ G R++ +W +++AG   +G    A+ALF  M 
Sbjct: 248 EKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRALALFTRME 307

Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
             G+ P+ + F  +L+ACSH GLV++G   F  M   +GI P I HYGCMVD+ CR+G  
Sbjct: 308 TTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGMF 367

Query: 266 KEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325
           ++A E IQ MP+E +  + + L+ AC     L+L +    RLI   P   + YVLLS+IY
Sbjct: 368 EKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSNIY 427

Query: 326 AKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMG 385
           A    W +  K+R++M  RG+ K PGS+ +EL+  I+EF+ GDKSH + ++IY+MLDE+ 
Sbjct: 428 ALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLDEIC 487

Query: 386 RKMKKAGYVPTTSEVLLDINEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVC 444
           +++K AGY P TS+VLLDI++ED KE +L  HSEKLAIAF L+ T PGTPIR+V NLR+C
Sbjct: 488 QQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNNLRIC 547

Query: 445 NDCHSATKFISKIYNRE 461
            DCH+A K +SKIY R 
Sbjct: 548 GDCHNAIKLLSKIYGRN 564


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 285/475 (60%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV PN FTY  VL         +L   +H  ++K  +     V   L+  Y     
Sbjct: 399 MSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGN 454

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  R VF  +  +D V+WSAM+ G A+   S  A+++F Q+   GV P+E T  +V++
Sbjct: 455 VVESAR-VFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC+   A +E GK + +   K   + ++ + +AL+ M++K G+++ A K+F     R IV
Sbjct: 514 ACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIV 573

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I G   HG   +A+ +F+ M   G+P DDV F+G+L+AC+H GLV++G +YF+ M
Sbjct: 574 SWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIM 633

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D+ I  K EHY CMVD+  R+G   +A + I  MP  A+P IWRTL++AC     L+L
Sbjct: 634 IKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLEL 693

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +   ++L+  +P     YVLLS+I+A    WE+K  +R++MD+R +KK  G + IE+ N
Sbjct: 694 GKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
            I+ F+ GD SH  S  +Y  L+E+  K+K  GY P T+ V  D+ EE KE  L++HSE+
Sbjct: 754 RIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSER 813

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LAIA+ L+  PPG PI+I KNLR+C DCH+  + IS I  R ++VRD +RFHHFK
Sbjct: 814 LAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFK 868



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+  +  T    LK C  + D  +G+ VH   LK  F +D+ V  +LV MY   E   E 
Sbjct: 99  GLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTED-FED 157

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
           GR +FDEM  ++ VSW++++ GYAR GL+ + I L  QMQ+ GV P+  T  TVL A  D
Sbjct: 158 GRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALAD 217

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
              +E G  V + I K     +  +CNALI M+ K   V  A  +F SM  R  V+W  +
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKGR 233
           I G A  G  LE   +F  M  AGV      F   L  CS           HCG+V  G 
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337

Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
           E+   ++              ++    +   V EA +         N + W  +I     
Sbjct: 338 EFAQDIRT------------ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQ 385

Query: 294 RGELKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351
               K A  +  ++   G  P H +   +L+   + LL     +++   + K   +K+P 
Sbjct: 386 NNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL-----SQLHAQIIKAYYEKVPS 440

Query: 352 STLIELD 358
                LD
Sbjct: 441 VATALLD 447



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 4/232 (1%)

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++FDE   +D   ++ ++  ++R     +A+ LF+ +  SG+  D +T+   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           L    VG+ V     K      V +  +L+DM+ K  D +    +F  M  + +VSWTS+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDF 243
           ++G A +G   E + L  +M   GV P+   F  +L A +   +++ G +    + KN F
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
                +     ++ M  +S  V +A      M +  + + W  +I    A G
Sbjct: 237 EFTTFV--CNALICMYLKSEMVGDAEAVFDSMVVR-DSVTWNIMIGGYAAIG 285


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 287/475 (60%), Gaps = 6/475 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M E  V PN+FTY  +LKA   I    L   +H  V+K  +     V   L+  Y S  G
Sbjct: 395 MREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASY-SKFG 449

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             E    +F  + ++D V+WSAM+  +A+ G    A  LF +M I G+ P+E T+ +V+ 
Sbjct: 450 STEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVID 509

Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
           AC    A ++ G+   +   K   + ++ + +AL+ M+++ G++D A  +F     R +V
Sbjct: 510 ACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLV 569

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
           SW S+I+G A HG  ++A+  F +M  +G+  D V F+ ++  C+H GLV +G++YFDSM
Sbjct: 570 SWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSM 629

Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
             D  I P +EHY CMVD+  R+G++ E    I+ MP  A  ++WRTL+ AC     ++L
Sbjct: 630 VRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVEL 689

Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
            +    +L+  EP   S YVLLS+IYA   +W+++ ++R++MD R +KK  G + I++ N
Sbjct: 690 GKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKN 749

Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
           +++ F+  DKSH  S +IY+ L  +  ++K+ GY P TS VL DI E+ KE  L  HSE+
Sbjct: 750 KVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSER 809

Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           LA+AF L+ TPPGTP++IVKNLRVC DCH   K +S I +REI++RD  RFHHF 
Sbjct: 810 LALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFN 864



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 9/307 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD---IHVQNTLVHMYGSCEGG 61
           GV  +  T   VLKAC  + D  LG+ +H   L  + G D   +    +LV MY  C G 
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLH--CLCVKCGHDRGEVSAGTSLVDMYMKC-GS 150

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
           +  G +VF+ M +++ V+W++++ G A   + ++ + LF +M+  G+ P+  T  +VLSA
Sbjct: 151 VCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSA 210

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
               GAL++G+ V +   K     SV +CN+L++M+AKCG V+ A  +F  M  R +VSW
Sbjct: 211 VASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSW 270

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MK 240
            +++AGL ++   LEA+ LF E            +  ++  C++   +   R+     +K
Sbjct: 271 NTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
           + F +   +     + D   + G + +A           N + W  +IS C   G++ LA
Sbjct: 331 HGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 301 ESITKRL 307
             +  R+
Sbjct: 389 VVLFSRM 395



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   G+ PN FT+  VL A A  G L+LG+ VH   +KF     + V N+L++MY  C G
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC-G 250

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +E  + VF+ M  RD VSW+ ++ G        +A+ LF + + +     + T  TV+ 
Sbjct: 251 LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIK 310

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
            C +L  L + + + S + K   + +  +  AL D ++KCG++  AL +F    G R +V
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVV 370

Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222
           SWT++I+G   +G    AV LF  M E  V P++  +  +L A
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 65  GRKVFDEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
            R   DE+  RD+ V  + ++  YAR G+  + +D F   +  GV  D  T+  VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 124 DLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
            +    +G+ +     K   +R  V    +L+DM+ KCG V + +++F  M  + +V+WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG-REYFDSMKN 241
           S++ G A      E +ALF  M   G+ P+   F  +LSA +  G +D G R +  S+K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK- 229

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
            FG    +     +++M  + G V++A      M    + + W TL++
Sbjct: 230 -FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVSWNTLMA 275


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 265/413 (64%), Gaps = 4/413 (0%)

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSAC 122
           L +KV    S+++ ++W+ MIGGY R     +A+   + M   + + P++ +  + L+AC
Sbjct: 93  LAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAAC 152

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             LG L   KWV S +    +  +  L +AL+D++AKCGD+  + ++F S+    +  W 
Sbjct: 153 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 212

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A HG   EA+ +F EM    V PD + F+GLL+ CSHCGL+++G+EYF  M   
Sbjct: 213 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 272

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           F I PK+EHYG MVD+L R+GRVKEA+E I+ MPIE + +IWR+L+S+       +L E 
Sbjct: 273 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 332

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             + L         +YVLLS+IY+   +WE   K+RE+M K G++K  G + +E    I+
Sbjct: 333 AIQNL---SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 389

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  GD SH ++K IY++L+ + +K K  G+V  T  VL+D++EE+KE+ LN HSEKLA+
Sbjct: 390 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLAL 449

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ +LK+ PGT IRI KN+R+C+DCH+  K +SK+ NR I++RDR RFH F+D
Sbjct: 450 AYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFED 502



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PNKF++   L ACA +GDL+  K VH  ++      +  + + LV +Y  C G I   
Sbjct: 138 IKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKC-GDIGTS 196

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R+VF  +   D   W+AMI G+A  GL+T+AI +F +M+   V PD IT + +L+ C+  
Sbjct: 197 REVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHC 256

Query: 126 GALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTS 183
           G LE GK     + ++  +   +    A++D+  + G V +A +L  SM     +V W S
Sbjct: 257 GLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRS 316

Query: 184 VIAG 187
           +++ 
Sbjct: 317 LLSS 320


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 265/413 (64%), Gaps = 4/413 (0%)

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSAC 122
           L +KV    S+++ ++W+ MIGGY R     +A+   + M   + + P++ +  + L+AC
Sbjct: 116 LAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAAC 175

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
             LG L   KWV S +    +  +  L +AL+D++AKCGD+  + ++F S+    +  W 
Sbjct: 176 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
           ++I G A HG   EA+ +F EM    V PD + F+GLL+ CSHCGL+++G+EYF  M   
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 295

Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
           F I PK+EHYG MVD+L R+GRVKEA+E I+ MPIE + +IWR+L+S+       +L E 
Sbjct: 296 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 355

Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
             + L         +YVLLS+IY+   +WE   K+RE+M K G++K  G + +E    I+
Sbjct: 356 AIQNL---SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 412

Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
            F  GD SH ++K IY++L+ + +K K  G+V  T  VL+D++EE+KE+ LN HSEKLA+
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLAL 472

Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           A+ +LK+ PGT IRI KN+R+C+DCH+  K +SK+ NR I++RDR RFH F+D
Sbjct: 473 AYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFED 525



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + PNKF++   L ACA +GDL+  K VH  ++      +  + + LV +Y  C G I   
Sbjct: 161 IKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKC-GDIGTS 219

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           R+VF  +   D   W+AMI G+A  GL+T+AI +F +M+   V PD IT + +L+ C+  
Sbjct: 220 REVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHC 279

Query: 126 GALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTS 183
           G LE GK     + ++  +   +    A++D+  + G V +A +L  SM     +V W S
Sbjct: 280 GLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRS 339

Query: 184 VIAG 187
           +++ 
Sbjct: 340 LLSS 343


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 190/478 (39%), Positives = 276/478 (57%), Gaps = 7/478 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML  GV P + T    L+ C    DL+  + V     +     D+ +   LV  Y  C+G
Sbjct: 323 MLLEGVVPTRSTLFAALEGCE---DLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDG 379

Query: 61  GIELGRKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
             E   +VF   E  E D+   +AMI  YA+         L+      G+ PD I  +T 
Sbjct: 380 Q-EDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITA 438

Query: 119 LSACTDLGALEVGKWVESFIEK-QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
           L AC  L AL  G+ + + +   + ++R V L NA++ M+ +CG +  A   F  M  R 
Sbjct: 439 LDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARD 498

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
            +SW ++++  A HGR  +   LF  ML+ G   + VAF+ LLSAC+H GLV+ G E+F 
Sbjct: 499 EISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFS 558

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
           +M  D G++P  EHYGCMVD+L R GR+ +AH  +Q MP+  +   W  L+ AC   G+ 
Sbjct: 559 AMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDT 618

Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
           +      +R++     H + YV L +IY+   RWE    +R++M   G++KIPG + IE+
Sbjct: 619 ERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEI 678

Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
            ++++EFV  D+SH QS+ IY  L+ +   +++AGY   T EVL D+ EE KE  L  HS
Sbjct: 679 RSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHS 738

Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           EKLAIAF ++ TP G+ +R++KNLRVC DCH+A+KFISK++ REIVVRD  RFHHFKD
Sbjct: 739 EKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKD 796



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 13/285 (4%)

Query: 44  DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
           D ++ ++LV+MY  C G +E    VF +++ +  V W+ +I  Y   G S  AI LF ++
Sbjct: 61  DGYLASSLVYMYLRC-GSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119

Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL----CNALIDMFAK 159
              G+  D I  V+VLSAC+    L  G+     I +  V   +GL     +AL+ M+ +
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAGR----LIHRCAVEAGLGLQEIVASALVSMYGR 175

Query: 160 CGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218
           CG +  A  LF  +     +V W ++I   + +G   EA+ +F  ML+ G+PPD V FV 
Sbjct: 176 CGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVS 235

Query: 219 LLSACSHC-GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
           +  ACS    L     + F +  ++ G+   +     +V+   R G +  A EF   MP 
Sbjct: 236 VFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMP- 294

Query: 278 EANPIIWRTLISACCARGELKLAESITKRLI-GNEPMHESNYVLL 321
           E N + W ++I+A    G L   E+    L+ G  P   + +  L
Sbjct: 295 ERNAVSWTSMIAAFAQIGHLLAVETFHAMLLEGVVPTRSTLFAAL 339



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           +L+ G++ +   +  VL AC+    L  G+ +H   ++   G    V + LV MYG C G
Sbjct: 119 ILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRC-G 177

Query: 61  GIELGRKVFDEMSER-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
            +     +F  +    D V W+AMI   ++ G   +A+++F +M   G+ PD +T V+V 
Sbjct: 178 SLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVF 237

Query: 120 SACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
            AC+   +L     K   + +++  +   V +  AL++ +A+CG++D A + F +M  R 
Sbjct: 238 KACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERN 297

Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
            VSWTS+IA  A  G  L AV  F  ML  GV P        L  C
Sbjct: 298 AVSWTSMIAAFAQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGC 342


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/428 (42%), Positives = 278/428 (64%), Gaps = 3/428 (0%)

Query: 49  NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
           N ++  +G   G +   R +F+ M ERD  +W+AMI  + R GL  +A+ LF +MQ  GV
Sbjct: 273 NEMILQFG-LAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGV 331

Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168
             +  +M++VLS C  L +L+ G+ V + + +   ++ + + + LI M+ KCGD+ +A  
Sbjct: 332 ALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKG 391

Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
           +F     + +V W S+I G + HG G EA+ +F +M  +GV PD+V F+G+LSACS+ G 
Sbjct: 392 IFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGK 451

Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
           V +G E F++MK  + + P IEHY CMVD+L R+GRV EA E ++KMP+E + I+W  L+
Sbjct: 452 VKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511

Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
            AC    +L LAE   ++L   EP +   YVLLSH+YA   RW     +R+ +++R + K
Sbjct: 512 GACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-K 570

Query: 349 IPGSTLIELDNEIYEFVCGD-KSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEE 407
            PG + IE++ +++ F  GD KSH +   I +ML+++   +++AGY P  S VL D++EE
Sbjct: 571 FPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEE 630

Query: 408 DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDR 467
           +K  +L  HSE+LA+A+ LLK P G PIR++KNLRVC DCHSA K I+K+  REI++RD 
Sbjct: 631 EKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDA 690

Query: 468 HRFHHFKD 475
           +RFHHFKD
Sbjct: 691 NRFHHFKD 698



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV+ N  +   VL  CA +  L+ G+ VH  +++ +F  D++V + L+ MY  C G
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKC-G 384

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            +   + +F+    +D V W++MI GY++ GL  +A+++F  M  SGV PDE+T + VLS
Sbjct: 385 DLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLS 444

Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
           AC+  G ++ G +  E+      V   +     ++D+  + G VD+A++L   M
Sbjct: 445 ACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKM 498



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 23/256 (8%)

Query: 48  QNTLVHMYGSCEGGIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
             + +  YG   G I   RKVFD   + +R   SW+AM+  Y       DA+ LF QM  
Sbjct: 22  NTSAISRYGRI-GDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQ 80

Query: 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165
                + ++   ++S     G +   + V       M  R+V    +++  + + G V++
Sbjct: 81  R----NTVSFNGMISGYVKNGMVADARKVFDV----MPERNVVSWTSMVRGYVQEGMVEE 132

Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV-GLLSACS 224
           A KLF  M  R +VSWT +I GL    R  +A  LF+      +P  DV  V  ++    
Sbjct: 133 AEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDM-----IPEKDVVVVTNMIGGYC 187

Query: 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIW 284
             G +D+ RE FD MK     +  +  +  MV    ++GRV  A +  + MP E N + W
Sbjct: 188 QVGRLDEARELFDEMK-----VRNVFTWTTMVSGYAKNGRVDVARKLFEVMP-ERNEVSW 241

Query: 285 RTLISACCARGELKLA 300
             ++      G +K A
Sbjct: 242 TAMLMGYTQSGRMKEA 257



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 56  GSCE-GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT 114
           G C+ G ++  R++FDEM  R+  +W+ M+ GYA+ G    A  LF  M       +E++
Sbjct: 185 GYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVS 240

Query: 115 MVTVLSACTDLGALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
              +L     +G  + G+  E+F + + M  + +  CN +I  F   G++ +A  +F  M
Sbjct: 241 WTAML-----MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGM 295

Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
             R   +W ++I      G  LEA+ LF  M   GV  +  + + +LS C+    +D GR
Sbjct: 296 KERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGR 355

Query: 234 E 234
           +
Sbjct: 356 Q 356



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 126/296 (42%), Gaps = 42/296 (14%)

Query: 48  QNTLVHMYGSCEGGIELG-----RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQ 102
           Q   V   G   G ++ G     RKVFD M ER+ VSW++M+ GY + G+  +A  LF +
Sbjct: 80  QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWE 139

Query: 103 MQISGVCPDEITMVTVLS--------------------ACTDL--GALEVGKWVESF-IE 139
           M    V    + +  +L                       T++  G  +VG+  E+  + 
Sbjct: 140 MPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELF 199

Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
            +M  R+V     ++  +AK G VD A KLF  M  R  VSWT+++ G    GR  EA  
Sbjct: 200 DEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFE 259

Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK-NDFGIIPKIEHYGCMVDM 258
           LFE M    +    VA   ++      G + + R  F+ MK  D G       +  M+ +
Sbjct: 260 LFEAMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMKERDEGT------WNAMIKV 309

Query: 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLI---SACCARGELKLAESITKRLIGNE 311
             R G   EA     +M  E   + + ++I   S C +   L     +  RL+ +E
Sbjct: 310 FERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/438 (41%), Positives = 269/438 (61%), Gaps = 5/438 (1%)

Query: 41  FGDDIHVQN--TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98
            GD+I   +  + V   G     I   R VFD M ER+ +SW++M+ GY + G  TDA+ 
Sbjct: 230 LGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALS 289

Query: 99  LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158
           LF QMQ S   P+ +T + ++SAC+ LG+  +G+ + +F+    ++    L NA++DM+ 
Sbjct: 290 LFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYM 349

Query: 159 KCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           KCGD+D A+++F +  +  R + SW  +I+G  +HG G EA+ LF  M   GV P+D+ F
Sbjct: 350 KCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITF 409

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
             +LSACSH GL+D+GR+ F  M     + P+++HY CMVDML R+G + EA   I+K+P
Sbjct: 410 TSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIP 468

Query: 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336
              +  +W  L+ AC   G  +L E     L   EP H   YVL+S+IYA   +W++   
Sbjct: 469 SRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEM 528

Query: 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396
           +R+ M  RG+KK    ++IE   E++ F   D+S    +E+Y  ++ +  +MK  GYVP 
Sbjct: 529 VRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPD 588

Query: 397 TSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISK 456
            S VL D+  EDKE  LN HSEKLA+AF ++K   G PI++ KNLRVC+DCH A KFIS 
Sbjct: 589 LSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISS 648

Query: 457 IYNREIVVRDRHRFHHFK 474
           IY R+I+VRD +RFHHF+
Sbjct: 649 IYGRKIIVRDGNRFHHFQ 666



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 145/318 (45%), Gaps = 42/318 (13%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           M   GV  N FTYPFVLK CA       G+ VHG V++  FG D+ V+  LV MY  C G
Sbjct: 123 MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC-G 181

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    +VFD M  RD V W+AMI  Y +      A+ LFR+MQ  G   DEIT ++V S
Sbjct: 182 EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVAS 241

Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
           A   LG            + +M                    + +A  +F  M  R  +S
Sbjct: 242 AVGQLG------------DGRMA-------------------ISRARLVFDRMEERNGIS 270

Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFD 237
           W S+++G   +GR  +A++LF +M  +   P+ V  + ++SACS+ G    GR+   +  
Sbjct: 271 WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI 330

Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI-EANPIIWRTLISACCARGE 296
           S K D     +      ++DM  + G +  A E      + E +   W  LIS     G 
Sbjct: 331 SSKMDIDTTLR----NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGH 386

Query: 297 LKLAESITKRLI--GNEP 312
            K A  +  R+   G EP
Sbjct: 387 GKEALELFSRMQVEGVEP 404



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 27/316 (8%)

Query: 13  YPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
           Y  +L+ C  +  L L   +H ++    F     H    L+ +Y    G +   R +FD 
Sbjct: 28  YDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKL-GDLHSARTLFDH 83

Query: 72  MSER--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC- 122
                       +S   + M+  YA  G S +AIDL+  MQ  GV  +  T   VL  C 
Sbjct: 84  RHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA 143

Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
           ++LGA+  G+ V   + +      + +  AL+DM+AKCG++  A ++F  M  R +V WT
Sbjct: 144 SELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWT 202

Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG----LVDKGREYFDS 238
           ++I       R L+A+ LF +M E G   D++  + + SA    G     + + R  FD 
Sbjct: 203 AMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDR 262

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI---EANPIIWRTLISACCARG 295
           M+   GI      +  M+    ++GR  +A     +M     + NP+    ++SAC   G
Sbjct: 263 MEERNGI-----SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLG 317

Query: 296 ELKLAESITKRLIGNE 311
              L   +   +I ++
Sbjct: 318 SKHLGRKLHNFVISSK 333


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/474 (38%), Positives = 288/474 (60%), Gaps = 5/474 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           V PN FT+    KAC  + D  +GK V G   K     +  V N+++ M+   +  +E  
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR-MEDA 427

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
           ++ F+ +SE++ VS++  + G  R      A  L  ++    +     T  ++LS   ++
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           G++  G+ + S + K  ++ +  +CNALI M++KCG +D A ++F  M  R ++SWTS+I
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
            G A HG  +  +  F +M+E GV P++V +V +LSACSH GLV +G  +F+SM  D  I
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
            PK+EHY CMVD+LCR+G + +A EFI  MP +A+ ++WRT + AC      +L +   +
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
           +++  +P   + Y+ LS+IYA   +WE+ T++R  M +R + K  G + IE+ ++I++F 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA----LNKHSEKLA 421
            GD +H  + +IY+ LD +  ++K+ GYVP T  VL  + EE+ E      L +HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787

Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
           +AF L+ T    P+R+ KNLRVC DCH+A K+IS +  REIV+RD +RFHHFKD
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKD 841



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 155/319 (48%), Gaps = 14/319 (4%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
            LE G+ PN + Y  V++AC+    + +G+   G ++K   F  D+ V  +L+ M+   E
Sbjct: 157 FLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGE 216

Query: 60  GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
              E   KVFD+MSE + V+W+ MI    ++G   +AI  F  M +SG   D+ T+ +V 
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC---GDVDKALKLFRSMNGR 176
           SAC +L  L +GK + S+  +  +   V    +L+DM+AKC   G VD   K+F  M   
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDH 334

Query: 177 TIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGRE 234
           +++SWT++I G   +     EA+ LF EM+  G V P+   F     AC +      G++
Sbjct: 335 SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
                    G+         ++ M  +S R+++A    + +  E N + + T +   C  
Sbjct: 395 VLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCRN 452

Query: 295 ----GELKLAESITKRLIG 309
                  KL   IT+R +G
Sbjct: 453 LNFEQAFKLLSEITERELG 471



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 9/326 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
           M+  G   +KFT   V  ACA + +L+LGK +H   ++    DD  V+ +LV MY  C  
Sbjct: 260 MVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSA 317

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYAR-LGLSTDAIDLFRQMQISG-VCPDEITMV 116
           +G ++  RKVFD M +   +SW+A+I GY +   L+T+AI+LF +M   G V P+  T  
Sbjct: 318 DGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS 377

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
           +   AC +L    VGK V     K+ +  +  + N++I MF K   ++ A + F S++ +
Sbjct: 378 SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK 437

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
            +VS+ + + G   +    +A  L  E+ E  +      F  LLS  ++ G + KG E  
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG-EQI 496

Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG- 295
            S     G+         ++ M  + G +  A      M    N I W ++I+     G 
Sbjct: 497 HSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHGF 555

Query: 296 ELKLAESITKRLIGNEPMHESNYVLL 321
            +++ E+  + +      +E  YV +
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAI 581



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 1   MLEYGVSP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
           M   G+ P +  T+  +LK+C    D  LGK VH  +++F    D  + N+L+ +Y S  
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLY-SKS 110

Query: 60  GGIELGRKVFDEM---SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
           G       VF+ M    +RD VSWSAM+  Y   G   DAI +F +    G+ P++    
Sbjct: 111 GDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYT 170

Query: 117 TVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMN 174
            V+ AC++   + VG+    F+ K       V +  +LIDMF K     + A K+F  M+
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
              +V+WT +I      G   EA+  F +M+ +G   D      + SAC+    +  G++
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290

Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLIS 289
              S     G++  +E    +VDM  +    G V +  +   +M  + + + W  LI+
Sbjct: 291 -LHSWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWTALIT 344



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 25/216 (11%)

Query: 93  STDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVES-FIEKQMVNRSVGLC 150
           +  A+DL   M   G+ P D +T  ++L +C       +GK V +  IE  +   SV L 
Sbjct: 45  AVSALDL---MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LY 100

Query: 151 NALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
           N+LI +++K GD  KA  +F +M     R +VSW++++A    +GR L+A+ +F E LE 
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160

Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY------GC-MVDMLC 260
           G+ P+D  +  ++ ACS+   V  GR          G + K  H+      GC ++DM  
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRV-------TLGFLMKTGHFESDVCVGCSLIDMFV 213

Query: 261 R-SGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           +     + A++   KM  E N + W  +I+ C   G
Sbjct: 214 KGENSFENAYKVFDKMS-ELNVVTWTLMITRCMQMG 248


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/501 (37%), Positives = 302/501 (60%), Gaps = 35/501 (6%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE------ 59
           + P+   +  +L+AC    D+      H  +++F +G +  +  +L+  Y +C       
Sbjct: 7   ILPDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAY 66

Query: 60  --------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS 93
                                     G  E+ +KVF +M +RD V+W++MIGGY R G  
Sbjct: 67  QVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKF 126

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +A+  F+ M  S V PD+ T  +V++AC  LGAL   +W+   + ++ +  +  L +AL
Sbjct: 127 EEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSAL 186

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM++KCG ++ A ++F S+    +  W S+I GLA+HG  L+A+ +F +M    V PD 
Sbjct: 187 IDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDS 246

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           + F+G+L ACSHCGLV +GR+YFD M+N + I P++EHYG MVD+L R+G + EA+  I 
Sbjct: 247 LTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMIT 306

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP+E + I+WR L+SAC      +L E     + G +     +YVLLS+IY    RW+ 
Sbjct: 307 AMPMEPDVIVWRILLSACRTHRNTELGEVAVANISGPKS---GDYVLLSNIYCSQNRWDN 363

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             ++RE+M + G++K  G +  E ++ ++ F  GDKSH +++ +Y++L+ + ++ K  G+
Sbjct: 364 AQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKLEGF 423

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP+T  V++D++EE+KE+ L  HSEKLA+A+ +LKT PGT IRI KNLR+C DCH+  K 
Sbjct: 424 VPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCHNWIKM 483

Query: 454 ISKIYNREIVVRDRHRFHHFK 474
           +S + +R I++RDR RFH F+
Sbjct: 484 VSGLLSRVIIIRDRIRFHRFE 504



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML   V P+KFT+  V+ ACA +G LN  + +H  +++ +   +  + + L+ MY  C G
Sbjct: 136 MLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKC-G 194

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            IE  ++VF+ +   D   W+++I G A  GL+ DA+ +F +M+   V PD +T + +L 
Sbjct: 195 RIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILK 254

Query: 121 ACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-I 178
           AC+  G ++ G+     +E    +   +    A++D+  + G +D+A  +  +M     +
Sbjct: 255 ACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDV 314

Query: 179 VSWTSVIAGLAMH 191
           + W  +++    H
Sbjct: 315 IVWRILLSACRTH 327


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 289/473 (61%), Gaps = 2/473 (0%)

Query: 2    LEY-GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
            +EY G+  +   +   + ACAGI  L  G+ +H       FG D+ + N L+ +Y  C G
Sbjct: 555  MEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARC-G 613

Query: 61   GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
             I+     F+++ +++++SW++++ G A+ G   +A+ +F +M  +    +  T  + +S
Sbjct: 614  RIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS 673

Query: 121  ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
            A   L  ++ G+ + S + K   +    + N+LI ++AK G +  A + F  M+ R ++S
Sbjct: 674  AAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVIS 733

Query: 181  WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
            W ++I G + HG G+EA+ LFEEM   G+ P+ V FVG+LSACSH GLV +G +YF+SM 
Sbjct: 734  WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMF 793

Query: 241  NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
                ++PK EHY C+VD+L R+G++  A E+I++MPI A+ +IWRTL+SAC     +++ 
Sbjct: 794  KIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIG 853

Query: 301  ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
            E     L+  EP   + YVL+S+IYA   +W  +   R++M  RG+KK PG + IE+ N 
Sbjct: 854  ERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNA 913

Query: 361  IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
            ++ F  GDK H  + +IYE +  + R+  + GYV  +  +L +  +  K+   + HSEKL
Sbjct: 914  VHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKL 973

Query: 421  AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
            AIAF LL      PIR++KNLRVCNDCH+  K++SKI NR I+VRD HRFHHF
Sbjct: 974  AIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHF 1026



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 165/308 (53%), Gaps = 5/308 (1%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P+  T   +L ACA +G L+ G  +H   +K     DI ++ +L+ +Y  C   +E  
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKC-ADVETA 416

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            K F      + V W+ M+  Y +L   +D+ ++FRQMQ+ G+ P++ T  ++L  CT L
Sbjct: 417 HKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL +G+ + + + K     +V +C+ LIDM+AK G +  AL++ R +    +VSWT++I
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
           AG   H    EA+ LFEEM   G+  D++ F   +SAC+    + +G++ +  S    FG
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG 596

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
               I +   ++ +  R GR++EA+   +K+  + N I W +L+S     G  + A  + 
Sbjct: 597 ADLSINN--ALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGYFEEALQVF 653

Query: 305 KRLIGNEP 312
            R++  E 
Sbjct: 654 VRMLRTEA 661



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDL--NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           ML  G++PN +T+  VLKAC G GD+  N  K VH     + F     V N L+ +Y S 
Sbjct: 150 MLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLY-SK 207

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
            G IE  +KVF+ +  +D V+W AMI G ++ GL  +AI LF  M  S + P    + +V
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSV 267

Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
           LSA T +   E+G+ +   + K   +    +CN L+ ++++   +  A ++F +MN R  
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
           VS+ S+I+GL   G    A+ LF +M    + PD +    LLSAC+  G + KG +   S
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHS 386

Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
                G+   I   G ++D+  +   V+ AH+F      E N ++W  ++ A
Sbjct: 387 HAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA 437



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 158/314 (50%), Gaps = 9/314 (2%)

Query: 5   GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
           G+ PN+FTYP +L+ C  +G L LG+ +H  V+K  F  +++V + L+ MY    G + L
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAK-YGQLAL 516

Query: 65  GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
             ++   + E D VSW+AMI GY +  + ++A+ LF +M+  G+  D I   + +SAC  
Sbjct: 517 ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
           + AL  G+ + +          + + NALI ++A+CG + +A   F  +  +  +SW S+
Sbjct: 577 IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
           ++GLA  G   EA+ +F  ML      +   +   +SA +    + +G++   SM    G
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTG 695

Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC----CARGELKLA 300
              + E    ++ +  +SG + +A      M  E N I W  +I+      C    L+L 
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHGCGMEALRLF 754

Query: 301 ESITKRLIGNEPMH 314
           E +  ++ G  P H
Sbjct: 755 EEM--KVCGIMPNH 766



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 9/288 (3%)

Query: 6   VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
           + P  +    VL A   I    LG+ +H  V+K+ F  + +V N LV +Y      I   
Sbjct: 257 IFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLIS-A 315

Query: 66  RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
            ++F  M+ RD VS++++I G  + G S  A++LF +MQ   + PD IT+ ++LSAC  +
Sbjct: 316 ERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASV 375

Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
           GAL  G  + S   K  ++  + L  +L+D+++KC DV+ A K F +     IV W  ++
Sbjct: 376 GALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVML 435

Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFG 244
                     ++  +F +M   G+ P+   +  +L  C+  G +  G + +   +K  F 
Sbjct: 436 VAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF- 494

Query: 245 IIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
              ++  Y C  ++DM  + G++  A   ++++P E + + W  +I+ 
Sbjct: 495 ---QLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAG 538



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 108/194 (55%), Gaps = 5/194 (2%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
           ML      N FTY   + A A + ++  G+ +H  VLK  +  +  V N+L+ +Y    G
Sbjct: 656 MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAK-SG 714

Query: 61  GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
            I    + F++MSER+ +SW+AMI GY++ G   +A+ LF +M++ G+ P+ +T V VLS
Sbjct: 715 SISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLS 774

Query: 121 ACTDLGALEVG-KWVESFIE-KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRT 177
           AC+ +G ++ G  + ES  +   +V +S      ++D+  + G +D+A++  + M     
Sbjct: 775 ACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV-CVVDLLGRAGQLDRAMEYIKEMPIPAD 833

Query: 178 IVSWTSVIAGLAMH 191
            + W ++++   +H
Sbjct: 834 AMIWRTLLSACVIH 847



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 16/302 (5%)

Query: 1   MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
           M E GV  N   Y ++L+ C   G L     +H  + K  F  +  + ++LV  Y   G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 58  CEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
             G +    KVFDE S R   SW+ MI  +     +     LFR+M   G+ P+  T   
Sbjct: 109 QHGAV----KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAG 164

Query: 118 VLSACT--DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
           VL AC   D+ A    K V S       + S  + N LID+++K G ++ A K+F  +  
Sbjct: 165 VLKACVGGDI-AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICM 223

Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
           + IV+W ++I+GL+ +G   EA+ LF +M  + + P       +LSA +   L + G E 
Sbjct: 224 KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG-EQ 282

Query: 236 FDSMKNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
              +   +G     E Y C  +V +  RS ++  A      M    + + + +LIS    
Sbjct: 283 LHCLVIKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQ 339

Query: 294 RG 295
           +G
Sbjct: 340 QG 341



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 1/199 (0%)

Query: 97  IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156
           I L   M+  GV  +    + +L  C   G+L     +   I K   +    L ++L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216
           + + GD   A+K+F   + R++ SW  +I          +   LF  ML  G+ P+   F
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP 276
            G+L AC    +     +   S    +G          ++D+  ++G ++ A +    + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 277 IEANPIIWRTLISACCARG 295
           ++ + + W  +IS     G
Sbjct: 223 MK-DIVTWVAMISGLSQNG 240


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 291/479 (60%), Gaps = 6/479 (1%)

Query: 1   MLEYGVSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
           M   G++ +  +  FV+K+C       L  G  VH  + K+    D  +   ++ +Y  C
Sbjct: 28  MRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCNIFKYGHQWDTLLLTAVMDLYSXC 87

Query: 59  EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV-C-PDEITMV 116
           + G +   KVFDEM  RD+V+W+ MI    R   + DA+ LF  +Q S   C PD++T +
Sbjct: 88  QRGGD-ACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCL 146

Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
            +L AC  L ALE G+ +  ++ +     ++ L NALI M+++CG +DKA ++F+    +
Sbjct: 147 LLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEVFKGTGNK 206

Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-EY 235
            +VSW+++I+GLAM+G G EA+  FEEML  G+ PDD    G+LSACS+ G+VD+G   +
Sbjct: 207 NVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSF 266

Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
           FD M  +FG+ P + HYGCMVD+L  +G + +A + I  M  + +   WRTL+ AC   G
Sbjct: 267 FDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMVEKPDSTTWRTLLGACRIHG 326

Query: 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355
            + L E +   LI  +     ++VLL +IY+    WEK  ++R++M  + ++  PG + I
Sbjct: 327 HVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTI 386

Query: 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK 415
           EL   ++EFV  D SH ++ EIYE LDE+  +++ AGYV   S  L  +++++K   L+ 
Sbjct: 387 ELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSH 446

Query: 416 HSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
           HSEKLAIAF +L TPPGT +R+  NLR+C DC +  K  S +YN ++++RD +RFHHF+
Sbjct: 447 HSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLKHFSGVYNGDVILRDHNRFHHFR 505


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/442 (42%), Positives = 265/442 (59%), Gaps = 30/442 (6%)

Query: 64  LGRKVFDEMSERDSVSWSAMIGGYA------------------------------RLGLS 93
           + R+VFD+M ++D VSW  M+ GYA                              + G +
Sbjct: 199 VARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHA 258

Query: 94  TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153
            +AI  F QM++    P+ +T V+VL A   L A   G    + I +     +  + N+L
Sbjct: 259 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 318

Query: 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
           IDM+AKCG +D + KLF  M+ +  VSW ++++G A+HG G  A+ALF  M E+ V  D 
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 378

Query: 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273
           V+FV +LSAC H GLV++GR+ F SM + + I P +EHY CMVD+L R+G   E   FI+
Sbjct: 379 VSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIK 438

Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333
            MP+E +  +W  L+ +C     +KL E     L+  EP + +++V+LS IYA+  RW  
Sbjct: 439 VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWAD 498

Query: 334 KTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393
             K R  M+  G+KK PG + +EL N+++ F  GDKSH Q + ++ + + +  KM+K GY
Sbjct: 499 AGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY 558

Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
           VP  S VL ++ EEDKE  L  HSE+LAI FALL TPPG+ I+IVKNLRVC DCH+ TKF
Sbjct: 559 VPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKF 618

Query: 454 ISKIYNREIVVRDRHRFHHFKD 475
           ISKI  R I+VRD  RFHHF+D
Sbjct: 619 ISKITTRRIIVRDATRFHHFED 640



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 9/242 (3%)

Query: 8   PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
           PN  T+  VL A A +     G + H  +++  F  +  V N+L+ MY  C G ++   K
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC-GQLDYSEK 333

Query: 68  VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
           +F+EM  +D+VSW+AM+ GYA  G    AI LF  MQ S V  D ++ V+VLSAC   G 
Sbjct: 334 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 393

Query: 128 LEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVI 185
           +E G+ +  S  +K  +   +     ++D+  + G  D+ L   + M        W +++
Sbjct: 394 VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 453

Query: 186 AGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG-LVDKGREYFDSMKNDF 243
               MH    L  VAL  + L    P +   FV L S  +  G   D G+    S  ND 
Sbjct: 454 GSCRMHSNVKLGEVAL--DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKA--RSKMNDL 509

Query: 244 GI 245
           G+
Sbjct: 510 GL 511



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 49/277 (17%)

Query: 2   LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
           L      N   YP +L +C  +  L     +H  ++   F    H    L+++Y S    
Sbjct: 44  LSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHH-HSITHLINLY-SLFHK 98

Query: 62  IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
            +L R VFD       + W++MI  Y R     +A++++  M                  
Sbjct: 99  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM------------------ 140

Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
                           +EK  + R V +   L+DM++K GD+ +A ++F  M  R +V+W
Sbjct: 141 ----------------VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 184

Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
            ++IAGL+       A  +F++M++     DDV++  +++  +H G   +  E FD MK 
Sbjct: 185 NAMIAGLSQSEDPYVARRVFDQMVDQ----DDVSWGTMMAGYAHNGCFVEVLELFDKMK- 239

Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
             G +     +  ++    ++G  KEA     +M +E
Sbjct: 240 -LGNVT----WNVIIAAYMQNGHAKEAISSFHQMRLE 271


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,484,669,031
Number of Sequences: 23463169
Number of extensions: 312402771
Number of successful extensions: 888729
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8836
Number of HSP's successfully gapped in prelim test: 3178
Number of HSP's that attempted gapping in prelim test: 747025
Number of HSP's gapped (non-prelim): 51164
length of query: 475
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 329
effective length of database: 8,933,572,693
effective search space: 2939145415997
effective search space used: 2939145415997
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)