BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038542
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 331/471 (70%), Gaps = 2/471 (0%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P+ TYPF++KA + D+ LG+++H V++ FG I+VQN+L+H+Y +C G +
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
KVFD+M E+D V+W+++I G+A G +A+ L+ +M G+ PD T+V++LSAC +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
GAL +GK V ++ K + R++ N L+D++A+CG V++A LF M + VSWTS+I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 186 AGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
GLA++G G EA+ LF+ M G+ P ++ FVG+L ACSHCG+V +G EYF M+ ++
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+ AC G+ LAE
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
+++ EP H +YVLLS++YA RW KIR+ M + G+KK+PG +L+E+ N ++EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475
Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
+ GDKSH QS IY L EM +++ GYVP S V +D+ EE+KE+A+ HSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535
Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
L+ TP +PI +VKNLRVC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 4/264 (1%)
Query: 65 GRKVFDEMSERDSVS-WSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSAC 122
KVF ++ + +V W+ +I GYA +G S A L+R+M++SG+ PD T ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
T + + +G+ + S + + + + N+L+ ++A CGDV A K+F M + +V+W
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
SVI G A +G+ EA+AL+ EM G+ PD V LLSAC+ G + G+ M
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
G+ + ++D+ R GRV+EA +M ++ N + W +LI G K A
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEAIE 309
Query: 303 ITKRLIGNEPMHESNYVLLSHIYA 326
+ K + E + + +YA
Sbjct: 310 LFKYMESTEGLLPCEITFVGILYA 333
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G+ P+ FT +L ACA IG L LGK VH ++K ++H N L+ +Y C G +E
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARC-GRVEE 275
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACT 123
+ +FDEM +++SVSW+++I G A G +AI+LF+ M+ + G+ P EIT V +L AC+
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 124 DLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-TIVSW 181
G ++ G ++ E+ + + ++D+ A+ G V KA + +SM + +V W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 182 TSVIAGLAMHG 192
+++ +HG
Sbjct: 396 RTLLGACTVHG 406
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)
Query: 1 MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
MLE G SP+K T+PFVLKACA I + GK VH ++K FG D++V N L+H+YGSC
Sbjct: 141 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 199
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G ++L RKVFDEM ER VSW++MI R G A+ LFR+MQ S PD TM +VL
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 258
Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
SAC LG+L +G W +F+ ++ V V + N+LI+M+ KCG + A ++F+ M R
Sbjct: 259 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
+ SW ++I G A HGR EA+ F+ M++ V P+ V FVGLL AC+H G V+KGR+
Sbjct: 319 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 378
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
YFD M D+ I P +EHYGC+VD++ R+G + EA + + MP++ + +IWR+L+ ACC +
Sbjct: 379 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 438
Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
G ++L+E I + +IG + +ES+ YVLLS +YA RW +R++M + G+
Sbjct: 439 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 498
Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
+K PG + IE++ +EF GD SH Q+K+IY+ L + +++ GY+P S+ L+D
Sbjct: 499 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 558
Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
N+ KE +L HSE+LAIAF L+ PP TPIRI KNLRVCNDCH TK ISK++N EI+V
Sbjct: 559 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 618
Query: 465 RDRHRFHHFKD 475
RDR RFHHFKD
Sbjct: 619 RDRVRFHHFKD 629
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 50/228 (21%)
Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFR 171
+ ++ C+D+ L K + +F + ++ L ++ + + DV+ A ++F
Sbjct: 51 IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107
Query: 172 SMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSH---- 225
S+ + W ++I A R EA L+ +MLE G PD F +L AC++
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167
Query: 226 -------------------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
CG +D R+ FD M + +
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER-----SLVSWNS 222
Query: 255 MVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300
M+D L R G A + ++M E + ++++SAC G L L
Sbjct: 223 MIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLG 270
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/477 (46%), Positives = 325/477 (68%), Gaps = 3/477 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M++ V P++ T V+ ACA G + LG+ VH + FG ++ + N L+ +Y C G
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC-G 315
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E +F+ + +D +SW+ +IGGY + L +A+ LF++M SG P+++TM+++L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
AC LGA+++G+W+ +I+K++ V + L +LIDM+AKCGD++ A ++F S+ +++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
SW ++I G AMHGR + LF M + G+ PDD+ FVGLLSACSH G++D GR F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
M D+ + PK+EHYGCM+D+L SG KEA E I M +E + +IW +L+ AC G ++
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L ES + LI EP + +YVLLS+IYA RW + K R +++ +GMKK+PG + IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
+ ++EF+ GDK H +++EIY ML+EM ++KAG+VP TSEVL ++ EE KE AL HSE
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSE 675
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 676 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 38/347 (10%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
M+ G+ PN +T+PFVLK+CA G+ +HG VLK D++V +L+ MY G
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184
Query: 58 CE---------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
E G IE +K+FDE+ +D VSW+AMI GYA
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
G +A++LF+ M + V PDE TMVTV+SAC G++E+G+ V +I+ ++ +
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
NALID+++KCG+++ A LF + + ++SW ++I G EA+ LF+EML +G
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 211 PDDVAFVGLLSACSHCGLVDKGRE---YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
P+DV + +L AC+H G +D GR Y D K G+ ++DM + G ++
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYID--KRLKGVTNASSLRTSLIDMYAKCGDIEA 422
Query: 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL--IGNEP 312
AH+ + + + W +I G + + R+ IG +P
Sbjct: 423 AHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 33/259 (12%)
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
G+ VF + E + + W+ M G+A A+ L+ M G+ P+ T VL
Sbjct: 83 GLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLK 142
Query: 121 ACTDLGALEVGKWVESFIEK-------------------------------QMVNRSVGL 149
+C A + G+ + + K + +R V
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
ALI +A G ++ A KLF + + +VSW ++I+G A G EA+ LF++M++ V
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262
Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
PD+ V ++SAC+ G ++ GR+ + +D G ++ ++D+ + G ++ A
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWI-DDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 270 EFIQKMPIEANPIIWRTLI 288
+++P + + I W TLI
Sbjct: 322 GLFERLPYK-DVISWNTLI 339
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/512 (45%), Positives = 329/512 (64%), Gaps = 37/512 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
M + VSP+ T+PF+L + L LG+ H +L F D V+ +L++MY SC
Sbjct: 53 MRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGD 112
Query: 59 ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G I+ RK+FDEM ER+ +SWS +I GY
Sbjct: 113 LRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMC 172
Query: 91 GLSTDAIDLFRQMQI-----SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
G +A+DLFR+MQ+ + V P+E TM TVLSAC LGALE GKWV ++I+K V
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEI 232
Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV-SWTSVIAGLAMHGRGLEAVALFEEM 204
+ L ALIDM+AKCG +++A ++F ++ + V +++++I LAM+G E LF EM
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEM 292
Query: 205 LEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
+ + P+ V FVG+L AC H GL+++G+ YF M +FGI P I+HYGCMVD+ RSG
Sbjct: 293 TTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSG 352
Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
+KEA FI MP+E + +IW +L+S G++K E KRLI +PM+ YVLLS+
Sbjct: 353 LIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSN 412
Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
+YAK RW + IR M+ +G+ K+PG + +E++ ++EFV GD+S +S+ IY MLDE
Sbjct: 413 VYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDE 472
Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
+ +++++AGYV T EVLLD+NE+DKE AL+ HSEKLAIAF L+KT PGTP+RI+KNLR+
Sbjct: 473 IMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRI 532
Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
C DCH K ISK+++REIVVRD +RFHHF+D
Sbjct: 533 CGDCHLVMKMISKLFSREIVVRDCNRFHHFRD 564
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/476 (44%), Positives = 322/476 (67%), Gaps = 2/476 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
+LE G+ P+ +T+P +LKACA L G+ +H +K D+++V TL++MY CE
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED 179
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ R VFD + E V ++AMI GYAR +A+ LFR+MQ + P+EIT+++VLS
Sbjct: 180 -VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+C LG+L++GKW+ + +K + V + ALIDMFAKCG +D A+ +F M + +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W+++I A HG+ +++ +FE M V PD++ F+GLL+ACSH G V++GR+YF M
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ FGI+P I+HYG MVD+L R+G +++A+EFI K+PI P++WR L++AC + L LA
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E +++R+ + H +YV+LS++YA+ +WE +R+VM R K+PG + IE++N
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
++EF GD + +++ LDEM +++K +GYVP TS V+ ++N+++KE L HSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
LAI F LL TPPGT IR+VKNLRVC DCH+A K IS I+ R++V+RD RFHHF+D
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 2/238 (0%)
Query: 59 EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
E + R +F+ MSE D V +++M GY+R + LF ++ G+ PD T ++
Sbjct: 76 ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
L AC ALE G+ + K ++ +V +C LI+M+ +C DVD A +F + +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
V + ++I G A R EA++LF EM + P+++ + +LS+C+ G +D G+ +
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK-WIHK 254
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
++ ++DM + G + +A +KM + + W +I A G+
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGK 311
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/514 (42%), Positives = 324/514 (63%), Gaps = 44/514 (8%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
V PN+FT+P VLKACA G + GK +HG LK+ FG D V + LV MY C
Sbjct: 124 VEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDAR 183
Query: 59 --------------------------------EGGIELG-----RKVFDEMSERDSVSWS 81
+G + LG R +FD+M +R VSW+
Sbjct: 184 VLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 243
Query: 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
MI GY+ G DA+++FR+M+ + P+ +T+V+VL A + LG+LE+G+W+ + E
Sbjct: 244 TMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS 303
Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
+ L +ALIDM++KCG ++KA+ +F + +++W+++I G A+HG+ +A+ F
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363
Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
+M +AGV P DVA++ LL+ACSH GLV++GR YF M + G+ P+IEHYGCMVD+L R
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423
Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
SG + EA EFI MPI+ + +IW+ L+ AC +G +++ + + L+ P YV L
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVAL 483
Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
S++YA W + +++R M ++ ++K PG +LI++D ++EFV D SH ++KEI ML
Sbjct: 484 SNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543
Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
E+ K++ AGY P T++VLL++ EEDKE+ L+ HSEK+A AF L+ T PG PIRIVKNL
Sbjct: 544 VEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNL 603
Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
R+C DCHS+ K ISK+Y R+I VRDR RFHHF+D
Sbjct: 604 RICEDCHSSIKLISKVYKRKITVRDRKRFHHFQD 637
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 50/283 (17%)
Query: 62 IELGRKVFDEMSERDSVSWSAMIGGYARLG--LSTDAIDLFRQMQISG-VCPDEITMVTV 118
++ K+F++M +R+ SW+ +I G++ + AI LF +M V P+ T +V
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 119 LSACTDLGALEVGKWV-------------------------------------ESFIEKQ 141
L AC G ++ GK + ++ IEK
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 142 MV--------NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
MV + + L N +ID + + GD A LF M R++VSW ++I+G +++G
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
+AV +F EM + + P+ V V +L A S G ++ G E+ D GI
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGS 313
Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
++DM + G +++A +++P E N I W +I+ G+
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQ 355
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 162 DVDKALKLFRSMNGRTIVSWTSVIAGLAM--HGRGLEAVALFEEML-EAGVPPDDVAFVG 218
D+D A K+F M R SW ++I G + + L A+ LF EM+ + V P+ F
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 219 LLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
+L AC+ G + +G++ ++K FG + +V M G +K+A K I
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFV--MSNLVRMYVMCGFMKDARVLFYKNII 191
Query: 278 EANPII-------------WRTLISACCARGELKLAESITKRL 307
E + ++ W +I G+ K A + ++
Sbjct: 192 EKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/507 (42%), Positives = 324/507 (63%), Gaps = 36/507 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
+L ++PN+FT+ +LK+C+ GK +H VLKF G D +V LV +Y
Sbjct: 121 LLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176
Query: 57 -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
+C +G +E R +FD M ERD VSW+ MI GYA+
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236
Query: 91 GLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
G DA+ LF+++ G PDEIT+V LSAC+ +GALE G+W+ F++ + +V +
Sbjct: 237 GFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKV 296
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AG 208
C LIDM++KCG +++A+ +F + IV+W ++IAG AMHG +A+ LF EM G
Sbjct: 297 CTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356
Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
+ P D+ F+G L AC+H GLV++G F+SM ++GI PKIEHYGC+V +L R+G++K A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416
Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
+E I+ M ++A+ ++W +++ +C G+ L + I + LIG + YVLLS+IYA +
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASV 476
Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
+E K+R +M ++G+ K PG + IE++N+++EF GD+ H +SKEIY ML ++ ++
Sbjct: 477 GDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536
Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
K GYVP T+ VL D+ E +KE +L HSE+LAIA+ L+ T PG+P++I KNLRVC+DCH
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCH 596
Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
+ TK ISKI R+IV+RDR+RFHHF D
Sbjct: 597 TVTKLISKITGRKIVMRDRNRFHHFTD 623
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 32/294 (10%)
Query: 32 VHGAVLKFQF--GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
+H A+L+ V N +H + G I +F + + D ++A I +
Sbjct: 48 IHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASI 107
Query: 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA-------LEVGKWVESFIEKQM 142
GL A L+ Q+ S + P+E T ++L +C+ L+ G ++ ++ +
Sbjct: 108 NGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGL 167
Query: 143 VN--------------------RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
V+ RS+ A+I +AK G+V+ A LF SM R IVSW
Sbjct: 168 VDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWN 227
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241
+I G A HG +A+ LF+++L G P PD++ V LSACS G ++ GR +K+
Sbjct: 228 VMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKS 287
Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
I ++ ++DM + G ++EA P + + W +I+ G
Sbjct: 288 S-RIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/500 (41%), Positives = 320/500 (64%), Gaps = 30/500 (6%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SCE 59
+ P+ +T F+++AC G+ G VHG ++ F +D HVQ L+ +Y SC
Sbjct: 104 LKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 163
Query: 60 ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
G + RK+F+ M ERD ++W+AMI GYA++G S +
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 96 AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
A+++F MQ+ GV + + M++VLSACT LGAL+ G+W S+IE+ + +V L L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
++AKCGD++KA+++F M + + +W+S + GLAM+G G + + LF M + GV P+ V
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
FV +L CS G VD+G+ +FDSM+N+FGI P++EHYGC+VD+ R+GR+++A IQ+M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
P++ + +W +L+ A L+L +K+++ E + YVLLS+IYA W+ +
Sbjct: 404 PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVS 463
Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
+R+ M +G++K PG +++E++ E++EF GDKSH + +I + ++ R+++ AGY
Sbjct: 464 HVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKA 523
Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
T+ V+ DI+EE+KEDAL HSEK AIAF ++ PIRIVKNLRVC DCH + IS
Sbjct: 524 DTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMIS 583
Query: 456 KIYNREIVVRDRHRFHHFKD 475
KI+NREI+VRDR+RFHHFKD
Sbjct: 584 KIFNREIIVRDRNRFHHFKD 603
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 3/204 (1%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
GV N VL AC +G L+ G+ H + + + + + TLV +Y C G +E
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKC-GDMEK 293
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
+VF M E++ +WS+ + G A G ++LF M+ GV P+ +T V+VL C+
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353
Query: 125 LGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WT 182
+G ++ G + +S + + + L+D++A+ G ++ A+ + + M + + W+
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413
Query: 183 SVIAGLAMHGRGLEAVALFEEMLE 206
S++ M+ V ++MLE
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLE 437
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/506 (39%), Positives = 318/506 (62%), Gaps = 31/506 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
ML N +T+P +LKAC+ + +H + K + +D++ N+L++ Y
Sbjct: 106 MLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGN 165
Query: 59 ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G +++ +F +M+E++++SW+ MI GY +
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
++ +A+ LF +MQ S V PD +++ LSAC LGALE GKW+ S++ K + L
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
LIDM+AKCG++++AL++F+++ +++ +WT++I+G A HG G EA++ F EM + G+
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
P+ + F +L+ACS+ GLV++G+ F SM+ D+ + P IEHYGC+VD+L R+G + EA
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
FIQ+MP++ N +IW L+ AC ++L E I + LI +P H YV ++I+A +
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKK 465
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
W+K + R +M ++G+ K+PG + I L+ +EF+ GD+SH + ++I M RK+++
Sbjct: 466 WDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEE 525
Query: 391 AGYVPTTSEVLLDINEEDKEDAL-NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
GYVP E+LLD+ ++D+ +A+ ++HSEKLAI + L+KT PGT IRI+KNLRVC DCH
Sbjct: 526 NGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHK 585
Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
TK ISKIY R+IV+RDR RFHHF+D
Sbjct: 586 VTKLISKIYKRDIVMRDRTRFHHFRD 611
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 54/342 (15%)
Query: 4 YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-- 61
+ + N + L+ C+ +L K +H +LK D + + S
Sbjct: 8 FSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64
Query: 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
+ + VFD D+ W+ MI G++ ++ L+++M S + T ++L A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
C++L A E + + I K V N+LI+ +A G+ A LF + VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 182 TSVIAGLAMHGR-------------------------------GLEAVALFEEMLEAGVP 210
SVI G G+ EA+ LF EM + V
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 211 PDDVAFVGLLSACSHCGLVDKGR---EYFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVK 266
PD+V+ LSAC+ G +++G+ Y + + + GC ++DM + G ++
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-----LGCVLIDMYAKCGEME 299
Query: 267 EAHEF---IQKMPIEANPIIWRTLISACCARGELKLAESITK 305
EA E I+K ++A W LIS G + E+I+K
Sbjct: 300 EALEVFKNIKKKSVQA----WTALISGYAYHGHGR--EAISK 335
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/506 (41%), Positives = 318/506 (62%), Gaps = 31/506 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
ML+ + P+ T+PF++KA + + + +G+ H +++F F +D++V+N+LVHMY +C
Sbjct: 108 MLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGF 167
Query: 60 -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G +E R++FDEM R+ +WS MI GYA+
Sbjct: 168 IAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKN 227
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
AIDLF M+ GV +E MV+V+S+C LGALE G+ ++ K + ++ L
Sbjct: 228 NCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG 287
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
AL+DMF +CGD++KA+ +F + +SW+S+I GLA+HG +A+ F +M+ G
Sbjct: 288 TALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI 347
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
P DV F +LSACSH GLV+KG E +++MK D GI P++EHYGC+VDML R+G++ EA
Sbjct: 348 PRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAEN 407
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
FI KM ++ N I L+ AC ++AE + LI +P H YVLLS+IYA +
Sbjct: 408 FILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQ 467
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG-DKSHHQSKEIYEMLDEMGRKMK 389
W+K +R++M ++ +KK PG +LIE+D +I +F G D+ H + +I +E+ K++
Sbjct: 468 WDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIR 527
Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
GY T + D++EE+KE +++ HSEKLAIA+ ++KT PGT IRIVKNLRVC DCH+
Sbjct: 528 LIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHT 587
Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
TK IS++Y RE++VRDR+RFHHF++
Sbjct: 588 VTKLISEVYGRELIVRDRNRFHHFRN 613
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 147/338 (43%), Gaps = 44/338 (13%)
Query: 10 KFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM------YGSCEGG 61
+F +P +L++C+ DL K +HG +L+ D+ V + L+ + +
Sbjct: 10 RFKHPKLALLQSCSSFSDL---KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNL 66
Query: 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
+ +F ++ + ++ +I ++ + A + QM S + PD IT ++ A
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181
+++ + VG+ S I + V + N+L+ M+A CG + A ++F M R +VSW
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 182 TSVIAGLA--------------MHGRGL-----------------EAVALFEEMLEAGVP 210
TS++AG M R L +A+ LFE M GV
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
++ V ++S+C+H G ++ G ++ + + I +VDM R G +++A
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIH 305
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
+ +P E + + W ++I G A ++I
Sbjct: 306 VFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 315/475 (66%), Gaps = 2/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M++ G P+ FTYP +LKAC + + GK +HG V K D+ VQN+L++MYG C G
Sbjct: 123 MMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRC-G 181
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
+EL VF+++ + + SWS+M+ A +G+ ++ + LFR M + + +E MV+ L
Sbjct: 182 EMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
AC + GAL +G + F+ + + ++ + +L+DM+ KCG +DKAL +F+ M R +
Sbjct: 242 LACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL 301
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
+++++I+GLA+HG G A+ +F +M++ G+ PD V +V +L+ACSH GLV +GR F M
Sbjct: 302 TYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEM 361
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
+ + P EHYGC+VD+L R+G ++EA E IQ +PIE N +IWRT +S C R ++L
Sbjct: 362 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIEL 421
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
+ + L+ + +Y+L+S++Y++ W+ + R + +G+K+ PG +++EL
Sbjct: 422 GQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKG 481
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
+ + FV D+SH + KEIY+ML +M ++K GY P +++LL+++EE+K++ L HS+K
Sbjct: 482 KTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQK 541
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
+AIAF LL TPPG+ I+I +NLR+C+DCH+ TK IS IY REIVVRDR+RFH FK
Sbjct: 542 VAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFK 596
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 11/306 (3%)
Query: 15 FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM---YGSCEGGIELGRKVFDE 71
++LK C I + K VH +K + V + E + +F
Sbjct: 35 YLLKRCHNIDEF---KQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRG 91
Query: 72 MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
+ + + ++ MI GY + +A+ + +M G PD T +L ACT L ++ G
Sbjct: 92 IDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREG 151
Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
K + + K + V + N+LI+M+ +CG+++ + +F + +T SW+S+++ A
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211
Query: 192 GRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
G E + LF M E + ++ V L AC++ G ++ G + + + I
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271
Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-- 308
+VDM + G + +A QKM + N + + +IS GE + A + ++I
Sbjct: 272 QTS-LVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHGEGESALRMFSKMIKE 329
Query: 309 GNEPMH 314
G EP H
Sbjct: 330 GLEPDH 335
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/452 (44%), Positives = 285/452 (63%), Gaps = 1/452 (0%)
Query: 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
G L L ++HG LK F V L +Y IE RK+FDE E+ SW+AM
Sbjct: 333 GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKL-NEIESARKLFDESPEKSLPSWNAM 391
Query: 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
I GY + GL+ DAI LFR+MQ S P+ +T+ +LSAC LGAL +GKWV +
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451
Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
S+ + ALI M+AKCG + +A +LF M + V+W ++I+G +HG+G EA+ +F E
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYE 511
Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
ML +G+ P V F+ +L ACSH GLV +G E F+SM + +G P ++HY CMVD+L R+G
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAG 571
Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
++ A +FI+ M IE +W TL+ AC + LA +++++L +P + +VLLS+
Sbjct: 572 HLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631
Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
I++ + + +R+ KR + K PG TLIE+ + F GD+SH Q KEIYE L++
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691
Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
+ KM++AGY P T L D+ EE++E + HSE+LAIAF L+ T PGT IRI+KNLRV
Sbjct: 692 LEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRV 751
Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
C DCH+ TK ISKI R IVVRD +RFHHFKD
Sbjct: 752 CLDCHTVTKLISKITERVIVVRDANRFHHFKD 783
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)
Query: 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
SPN T +L ACA +G L+LGK VH V F I+V L+ MY C G I R
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC-GSIAEAR 475
Query: 67 KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126
++FD M++++ V+W+ MI GY G +A+++F +M SG+ P +T + VL AC+ G
Sbjct: 476 RLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAG 535
Query: 127 ALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWT 182
++ G + S I + SV ++D+ + G + +AL+ +M+ G ++ W
Sbjct: 536 LVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV--WE 593
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221
+++ +H A + E++ E + PD+V + LLS
Sbjct: 594 TLLGACRIHKDTNLARTVSEKLFE--LDPDNVGYHVLLS 630
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 182/429 (42%), Gaps = 61/429 (14%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
+ PN TY F + A +G D G+ +HG + ++ + + +V MY +E
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF-WRVEDA 173
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACT 123
RKVFD M E+D++ W+ MI GY + + ++I +FR + I+ C D T++ +L A
Sbjct: 174 RKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVA 232
Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
+L L +G + S K + I +++KCG + LFR IV++ +
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292
Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-------- 235
+I G +G +++LF+E++ +G V L+ H L+ Y
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLS 352
Query: 236 -----------------FDSMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEF---IQ 273
+S + F P+ + + M+ ++G ++A +Q
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI--YAKLLRW 331
K NP+ ++SAC G L L + + L+ + S YV + I YAK
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWV-HDLVRSTDFESSIYVSTALIGMYAKCGSI 471
Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKE----IYEMLDEMGRK 387
+ ++ ++M K+ ++ +T+I G H Q +E YEML+
Sbjct: 472 AEARRLFDLMTKKN--EVTWNTMIS----------GYGLHGQGQEALNIFYEMLN----- 514
Query: 388 MKKAGYVPT 396
+G PT
Sbjct: 515 ---SGITPT 520
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 300/475 (63%), Gaps = 1/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+E GV P+ + VL AC +GDL+ G+ + + + + + V+ TLV++Y C G
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC-G 261
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E R VFD M E+D V+WS MI GYA + I+LF QM + PD+ ++V LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+C LGAL++G+W S I++ ++ + NALIDM+AKCG + + ++F+ M + IV
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
+ I+GLA +G + A+F + + G+ PD F+GLL C H GL+ G +F+++
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ + +EHYGCMVD+ R+G + +A+ I MP+ N I+W L+S C + +LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E++ K LI EP + NYV LS+IY+ RW++ ++R++M+K+GMKKIPG + IEL+ +
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
++EF+ DKSH S +IY L+++G +M+ G+VPTT V D+ EE+KE L HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
A+A L+ T G IR+VKNLRVC DCH K ISKI REIVVRD +RFH F +
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTN 676
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 168/301 (55%), Gaps = 3/301 (0%)
Query: 3 EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
++G+ + FT+P VLKAC LG +H V+K F D+ +L+ +Y S G +
Sbjct: 104 KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIY-SGSGRL 162
Query: 63 ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
K+FDE+ +R V+W+A+ GY G +AIDLF++M GV PD +V VLSAC
Sbjct: 163 NDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSAC 222
Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
+G L+ G+W+ ++E+ + ++ + L++++AKCG ++KA +F SM + IV+W+
Sbjct: 223 VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWS 282
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
++I G A + E + LF +ML+ + PD + VG LS+C+ G +D G E+ S+ +
Sbjct: 283 TMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDR 341
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
+ + ++DM + G + E ++M E + +I IS G +KL+ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFA 400
Query: 303 I 303
+
Sbjct: 401 V 401
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
++++I G+ L + +DLF ++ G+ T VL ACT + ++G + S +
Sbjct: 79 YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138
Query: 140 KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
K N V +L+ +++ G ++ A KLF + R++V+WT++ +G GR EA+
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198
Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR---EYFDSM---KNDFGIIPKIEHYG 253
LF++M+E GV PD V +LSAC H G +D G +Y + M KN F
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFV-------RT 251
Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
+V++ + G++++A M +E + + W T+I
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 296/475 (62%), Gaps = 1/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + G + FT V K C + +N GK VH +K + D+ V + ++ MY C G
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC-G 566
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ + FD + D V+W+ MI G G A +F QM++ GV PDE T+ T+
Sbjct: 567 DMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAK 626
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
A + L ALE G+ + + K + +L+DM+AKCG +D A LF+ + I +
Sbjct: 627 ASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA 686
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W +++ GLA HG G E + LF++M G+ PD V F+G+LSACSH GLV + ++ SM
Sbjct: 687 WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMH 746
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
D+GI P+IEHY C+ D L R+G VK+A I+ M +EA+ ++RTL++AC +G+ +
Sbjct: 747 GDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETG 806
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
+ + +L+ EP+ S YVLLS++YA +W++ R +M +KK PG + IE+ N+
Sbjct: 807 KRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNK 866
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
I+ FV D+S+ Q++ IY + +M R +K+ GYVP T L+D+ EE+KE AL HSEKL
Sbjct: 867 IHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKL 926
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
A+AF LL TPP TPIR++KNLRVC DCH+A K+I+K+YNREIV+RD +RFH FKD
Sbjct: 927 AVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKD 981
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 152/316 (48%), Gaps = 9/316 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+E V ++ T+ +L + L LG+ VH LK + V N+L++MY
Sbjct: 306 MVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 365
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
R VFD MSERD +SW+++I G A+ GL +A+ LF Q+ G+ PD+ TM +VL
Sbjct: 366 -FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424
Query: 121 ACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
A + L L + K V K + ALID +++ + +A LF N +V
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLV 483
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
+W +++AG G + + LF M + G DD + C +++G++ + +
Sbjct: 484 AWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYA 543
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
+K+ + + + ++DM + G + A +P+ + + W T+IS C GE +
Sbjct: 544 IKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEE 600
Query: 299 LAESITK--RLIGNEP 312
A + RL+G P
Sbjct: 601 RAFHVFSQMRLMGVLP 616
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 9/316 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
+L G+ P+++T VLKA + + + L+L K VH +K D V L+ Y
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
E ++ E D V+W+AM+ GY + + LF M G D+ T+ TV
Sbjct: 467 CMKE--AEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
C L A+ GK V ++ K + + + + ++DM+ KCGD+ A F S+ V
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDV 584
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
+WT++I+G +G A +F +M GV PD+ L A S +++GR+ + ++
Sbjct: 585 AWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANA 644
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
+K + P + +VDM + G + +A+ +++ + N W ++ GE K
Sbjct: 645 LKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGK 701
Query: 299 LAESITKRL--IGNEP 312
+ K++ +G +P
Sbjct: 702 ETLQLFKQMKSLGIKP 717
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Query: 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83
DL LGK H +L F+ + + N L+ MY C G + R+VFD+M +RD VSW+++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKC-GSLTYARRVFDKMPDRDLVSWNSI 111
Query: 84 IGGYARLGLST-----DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFI 138
+ YA+ A LFR ++ V +T+ +L C G + + +
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171
Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
K ++ + AL++++ K G V + LF M R +V W ++ G EA+
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231
Query: 199 ALFEEMLEAGVPPDDVAF 216
L +G+ P+++
Sbjct: 232 DLSSAFHSSGLNPNEITL 249
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%)
Query: 87 YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
Y G + + F M S V D++T + +L+ + +L +G+ V K ++
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349
Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
+ + N+LI+M+ K A +F +M+ R ++SW SVIAG+A +G +EAV LF ++L
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409
Query: 207 AGVPPDDVAFVGLLSACS 224
G+ PD +L A S
Sbjct: 410 CGLKPDQYTMTSVLKAAS 427
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 47/296 (15%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V ++ T +LK C G + +S HG K D V LV++Y G ++ G
Sbjct: 141 VYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF-GKVKEG 199
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+ +F+EM RD V W+ M+ Y +G +AIDL SG+ P+EIT+
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL---------- 249
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
+++ R GD A ++ NG S + +I
Sbjct: 250 ---------------RLLARI-------------SGDDSDAGQVKSFANGNDASSVSEII 281
Query: 186 ---AGLAMHGRGLEAVAL---FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
GL+ + + AL F +M+E+ V D V F+ +L+ + G++ M
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQ-VHCM 340
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
G+ + +++M C+ + A M E + I W ++I+ G
Sbjct: 341 ALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS-ERDLISWNSVIAGIAQNG 395
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-----EAVALFEE 203
L N LI M++KCG + A ++F M R +VSW S++A A + +A LF
Sbjct: 76 LINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRI 135
Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
+ + V + +L C H G V E F G+ G +V++ + G
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194
Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
+VKE ++MP + ++W ++ A
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLMLKA 220
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/477 (43%), Positives = 307/477 (64%), Gaps = 3/477 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + GV P++FTYPFV+KA + +GD + G ++H V+K+ FG V LV MY G
Sbjct: 100 MRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKF-G 158
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ +F+ M +D V+W+A + + G S A++ F +M V D T+V++LS
Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC LG+LE+G+ + K+ ++ ++ + NA +DM KCG+ + A LF M R +VS
Sbjct: 219 ACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVS 278
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
W+++I G AM+G EA+ LF M G+ P+ V F+G+LSACSH GLV++G+ YF M
Sbjct: 279 WSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338
Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
ND + P+ EHY CMVD+L RSG ++EA+EFI+KMP+E + IW L+ AC ++
Sbjct: 339 QSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI 398
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L + + L+ P S +VLLS+IYA +W+ K+R M K G KK+ + +E +
Sbjct: 399 LGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFE 458
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
+I+ F GDKSH QSK IYE LDE+ +K++K GYVP T V D+ E+KE +L+ HSE
Sbjct: 459 GKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSE 518
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+K PG PIR++KNLR C+DCH+ +KF+S + + EI++RD++RFHHF++
Sbjct: 519 KLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 11/293 (3%)
Query: 30 KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
K +H VL+ F + + L+ G + R+VFDEM + W+ + GY R
Sbjct: 28 KKIHAIVLRTGFSEKNSLLTQLLENLVVI-GDMCYARQVFDEMHKPRIFLWNTLFKGYVR 86
Query: 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
L +++ L+++M+ GV PDE T V+ A + LG G + + + K +
Sbjct: 87 NQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIV 146
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
L+ M+ K G++ A LF SM + +V+W + +A G A+ F +M V
Sbjct: 147 ATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV 206
Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKN---DFGIIPKIEHYGCMVDMLCRSGRVK 266
D V +LSAC G ++ G E +D + D II + +DM + G +
Sbjct: 207 QFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVE----NARLDMHLKCGNTE 262
Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
A ++M + N + W T+I G+ + A ++ + NE + NYV
Sbjct: 263 AARVLFEEMK-QRNVVSWSTMIVGYAMNGDSREALTLFTTM-QNEGL-RPNYV 312
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/465 (41%), Positives = 288/465 (61%), Gaps = 3/465 (0%)
Query: 13 YPF--VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD 70
YPF VL AC G+G +N GK +H +++ F D I+V + L+ MY C+ + + VFD
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC-LHYAKTVFD 329
Query: 71 EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
M +++ VSW+AM+ GY + G + +A+ +F MQ SG+ PD T+ +SAC ++ +LE
Sbjct: 330 RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEE 389
Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
G + V + N+L+ ++ KCGD+D + +LF MN R VSWT++++ A
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQ 449
Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE 250
GR +E + LF++M++ G+ PD V G++SACS GLV+KG+ YF M +++GI+P I
Sbjct: 450 FGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509
Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310
HY CM+D+ RSGR++EA FI MP + I W TL+SAC +G L++ + + LI
Sbjct: 510 HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 569
Query: 311 EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKS 370
+P H + Y LLS IYA +W+ ++R M ++ +KK PG + I+ +++ F D+S
Sbjct: 570 DPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDES 629
Query: 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTP 430
+IY L+E+ K+ GY P TS V D+ E K LN HSE+LAIAF L+ P
Sbjct: 630 SPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVP 689
Query: 431 PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
G PIR+ KNLRVC DCH+ATK IS + REI+VRD RFH FKD
Sbjct: 690 SGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 160/326 (49%), Gaps = 33/326 (10%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M ++ + + T +LK + G ++LGK +HG V+K F + V + L++MY + G
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANV-G 188
Query: 61 GIELGRKVFDEMSER------------------------------DSVSWSAMIGGYARL 90
I +KVF + +R DSVSW+AMI G A+
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQN 248
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
GL+ +AI+ FR+M++ G+ D+ +VL AC LGA+ GK + + I + + +
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
+ALIDM+ KC + A +F M + +VSWT+++ G GR EAV +F +M +G+
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
PD +SAC++ +++G + F G+I + +V + + G + ++
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427
Query: 271 FIQKMPIEANPIIWRTLISACCARGE 296
+M + + + W ++SA G
Sbjct: 428 LFNEMNVR-DAVSWTAMVSAYAQFGR 452
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 141/342 (41%), Gaps = 70/342 (20%)
Query: 13 YPFVLKACAGIGDLNLG---KSVHGAVLKFQFGDDIHVQNTLVHMYG------------- 56
Y +K C G+G N K +HG +++ + + N +VH Y
Sbjct: 6 YSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFD 65
Query: 57 -----------------SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL 99
S G I F+++ +RD V+W+ +I GY+ GL A+
Sbjct: 66 RIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125
Query: 100 FRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWV---------ESFI----------- 138
+ M +T++T+L + G + +GK + ES++
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185
Query: 139 -------EKQMV----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
K++ +R+ + N+L+ CG ++ AL+LFR M + VSW ++I G
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKG 244
Query: 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGII 246
LA +G EA+ F EM G+ D F +L AC G +++G++ ++ +F
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ-- 302
Query: 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
I ++DM C+ + A +M + N + W ++
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMV 343
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/462 (43%), Positives = 306/462 (66%), Gaps = 2/462 (0%)
Query: 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
V+ AC+ + L +S+H V+K F + V NTL+ Y EGG+ + RK+FD++ +
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKW 133
+D VS+++++ YA+ G+S +A ++FR++ + V + IT+ TVL A + GAL +GK
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
+ + + + V + ++IDM+ KCG V+ A K F M + + SWT++IAG MHG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
+A+ LF M+++GV P+ + FV +L+ACSH GL +G +F++MK FG+ P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
CMVD+L R+G +++A++ IQ+M ++ + IIW +L++AC ++LAE RL +
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
+ Y+LLSHIYA RW+ ++R +M RG+ K PG +L+EL+ E++ F+ GD+ H Q
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548
Query: 374 SKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT 433
++IYE L E+ RK+ +AGYV TS V D++EE+KE L HSEKLAIAF ++ T PG+
Sbjct: 549 REKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGS 608
Query: 434 PIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
+ +VKNLRVC+DCH+ K ISKI +RE VVRD RFHHFKD
Sbjct: 609 TVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 169/337 (50%), Gaps = 18/337 (5%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + + P + ++P +KAC+ + D+ GK H F + DI V + L+ MY +C G
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTC-G 125
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI------SGVCPDEIT 114
+E RKVFDE+ +R+ VSW++MI GY G + DA+ LF+ + + + D +
Sbjct: 126 KLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185
Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD--VDKALKLFRS 172
+V+V+SAC+ + A + + + SF+ K+ +R V + N L+D +AK G+ V A K+F
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245
Query: 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDK 231
+ + VS+ S+++ A G EA +F +++ V + + +L A SH G +
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305
Query: 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
G+ D + G+ + ++DM C+ GRV+ A + +M N W +I+
Sbjct: 306 GKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGY 363
Query: 292 CARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
G A + +I G P NY+ + A
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRP----NYITFVSVLA 396
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 42/275 (15%)
Query: 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
D SW+++I AR G S +A+ F M+ + P + + AC+ L + GK
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
+ + +ALI M++ CG ++ A K+F + R IVSWTS+I G ++G L
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 196 EAVALFEEMLEAGVPPDDVAF------VGLLSACS-----------HCGLVDKGREYFDS 238
+AV+LF+++L DD F V ++SACS H ++ +G + S
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219
Query: 239 MKNDF------------GIIPKI---------EHYGCMVDMLCRSGRVKEAHEFIQKM-- 275
+ N + KI Y ++ + +SG EA E +++
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279
Query: 276 --PIEANPIIWRTLISACCARGELKLAESITKRLI 308
+ N I T++ A G L++ + I ++I
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI 314
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
R ++ + SW SVIA LA G EA+ F M + + P +F + ACS +
Sbjct: 34 RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIF 93
Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
G++ FG I ++ M G++++A + ++P + N + W ++I
Sbjct: 94 SGKQT-HQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRG 151
Query: 291 CCARGELKLAESITKRLIGNE 311
G A S+ K L+ +E
Sbjct: 152 YDLNGNALDAVSLFKDLLVDE 172
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/479 (41%), Positives = 305/479 (63%), Gaps = 6/479 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML VSP+ +T+ V+K+CA + L +GK VH + FG D +VQ LV Y C G
Sbjct: 98 MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKC-G 156
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E R+VFD M E+ V+W++++ G+ + GL+ +AI +F QM+ SG PD T V++LS
Sbjct: 157 DMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLS 216
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC GA+ +G WV +I + ++ +V L ALI+++++CGDV KA ++F M + +
Sbjct: 217 ACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA 276
Query: 181 WTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
WT++I+ HG G +AV LF +M + G P++V FV +LSAC+H GLV++GR + M
Sbjct: 277 WTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRM 336
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN---PIIWRTLISACCARGE 296
+ +IP +EH+ CMVDML R+G + EA++FI ++ P +W ++ AC
Sbjct: 337 TKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRN 396
Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
L I KRLI EP + ++V+LS+IYA + ++ + IR+ M + ++K G ++IE
Sbjct: 397 YDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIE 456
Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
++N+ Y F GD+SH ++ EIY L+ + + K+ GY P + EV+ + EE+KE AL H
Sbjct: 457 VENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYH 516
Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
SEKLA+AF LLKT I IVKNLR+C DCHSA K+IS + NR+I VRD+ RFHHF++
Sbjct: 517 SEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQN 574
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 6/290 (2%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V+ N Y +++A + L + VH ++ +G + L+ + S I
Sbjct: 5 VAANSAAYEAIVRAGPRVKQL---QQVHAHLIVTGYGRSRSLLTKLITLACSARA-IAYT 60
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+F + D ++++I ++L L + +R+M S V P T +V+ +C DL
Sbjct: 61 HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
AL +GK V + AL+ ++KCGD++ A ++F M ++IV+W S++
Sbjct: 121 SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLV 180
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
+G +G EA+ +F +M E+G PD FV LLSAC+ G V G + ++ G+
Sbjct: 181 SGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE-GL 239
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
++ ++++ R G V +A E KM E N W +ISA G
Sbjct: 240 DLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHG 288
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/493 (40%), Positives = 311/493 (63%), Gaps = 34/493 (6%)
Query: 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
VL ACA I +L G+ V + + + ++ + N ++ MY C G IE +++FD M E+
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC-GSIEDAKRLFDAMEEK 296
Query: 76 DSVSWSAMIGGYA-------------------------------RLGLSTDAIDLFRQMQ 104
D+V+W+ M+ GYA + G +A+ +F ++Q
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQ 356
Query: 105 IS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
+ + ++IT+V+ LSAC +GALE+G+W+ S+I+K + + + +ALI M++KCGD+
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416
Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
+K+ ++F S+ R + W+++I GLAMHG G EAV +F +M EA V P+ V F + AC
Sbjct: 417 EKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCAC 476
Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
SH GLVD+ F M++++GI+P+ +HY C+VD+L RSG +++A +FI+ MPI + +
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536
Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
W L+ AC L LAE RL+ EP ++ +VLLS+IYAKL +WE +++R+ M
Sbjct: 537 WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRV 596
Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
G+KK PG + IE+D I+EF+ GD +H S+++Y L E+ K+K GY P S+VL
Sbjct: 597 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQI 656
Query: 404 INEED-KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREI 462
I EE+ KE +LN HSEKLAI + L+ T IR++KNLRVC DCHS K IS++Y+REI
Sbjct: 657 IEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREI 716
Query: 463 VVRDRHRFHHFKD 475
+VRDR+RFHHF++
Sbjct: 717 IVRDRYRFHHFRN 729
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 7/275 (2%)
Query: 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-SCEGGIELGRKVFDEMSE 74
+++ C + L K HG +++ D + + L M S +E RKVFDE+ +
Sbjct: 36 LIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92
Query: 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKW 133
+S +W+ +I YA +I F M C P++ T ++ A ++ +L +G+
Sbjct: 93 PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 152
Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
+ K V V + N+LI + CGD+D A K+F ++ + +VSW S+I G G
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212
Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
+A+ LF++M V V VG+LSAC+ ++ GR+ ++ + + +
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLTLAN 271
Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
M+DM + G +++A M E + + W T++
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 305
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 9/196 (4%)
Query: 2 LEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG 61
L+ + N+ T L ACA +G L LG+ +H + K + HV + L+HMY C G
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC-GD 415
Query: 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121
+E R+VF+ + +RD WSAMIGG A G +A+D+F +MQ + V P+ +T V A
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
Query: 122 CTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
C+ G ++ ES + N + ++D+ + G ++KA+K +M
Sbjct: 476 CSHTGLVDEA---ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532
Query: 178 IVS-WTSVIAGLAMHG 192
S W +++ +H
Sbjct: 533 STSVWGALLGACKIHA 548
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 303/471 (64%), Gaps = 6/471 (1%)
Query: 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
N + F LK C GDL G +HG + F D + TL+ +Y +CE + KV
Sbjct: 112 NPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD-ACKV 170
Query: 69 FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ--ISG-VCPDEITMVTVLSACTDL 125
FDE+ +RD+VSW+ + Y R + D + LF +M+ + G V PD +T + L AC +L
Sbjct: 171 FDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANL 230
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
GAL+ GK V FI++ ++ ++ L N L+ M+++CG +DKA ++F M R +VSWT++I
Sbjct: 231 GALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALI 290
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN-DFG 244
+GLAM+G G EA+ F EML+ G+ P++ GLLSACSH GLV +G +FD M++ +F
Sbjct: 291 SGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFK 350
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
I P + HYGC+VD+L R+ + +A+ I+ M ++ + IWRTL+ AC G+++L E +
Sbjct: 351 IKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVI 410
Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
LI + +YVLL + Y+ + +WEK T++R +M ++ + PG + IEL ++EF
Sbjct: 411 SHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEF 470
Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDI-NEEDKEDALNKHSEKLAIA 423
+ D SH + +EIY+ML E+ +++K AGYV + L ++ +EE+K AL HSEKLAIA
Sbjct: 471 IVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIA 530
Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
F +L TPPGT IR+ KNLR C DCH+ KF+S +Y+R ++VRDR RFHHFK
Sbjct: 531 FGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFK 581
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P+ T L+ACA +G L+ GK VH + + +++ NTLV MY C G ++
Sbjct: 213 VKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC-GSMDKA 271
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+VF M ER+ VSW+A+I G A G +AI+ F +M G+ P+E T+ +LSAC+
Sbjct: 272 YQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHS 331
Query: 126 GALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
G + G F ++ + ++ ++D+ + +DKA L +SM + +
Sbjct: 332 GLVAEGMM---FFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDST 388
Query: 181 -WTSVIAGLAMHG 192
W +++ +HG
Sbjct: 389 IWRTLLGACRVHG 401
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 295/468 (63%), Gaps = 1/468 (0%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
+ P+ FT VL + D+ GK +HG V++ D+++ ++LV MY IE
Sbjct: 238 LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK-SARIEDS 296
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+VF + RD +SW++++ GY + G +A+ LFRQM + V P + +V+ AC L
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
L +GK + ++ + ++ + +AL+DM++KCG++ A K+F MN VSWT++I
Sbjct: 357 ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
G A+HG G EAV+LFEEM GV P+ VAFV +L+ACSH GLVD+ YF+SM +G+
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
++EHY + D+L R+G+++EA+ FI KM +E +W TL+S+C L+LAE + +
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536
Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
++ + + YVL+ ++YA RW++ K+R M K+G++K P + IE+ N+ + FV
Sbjct: 537 KIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFV 596
Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
GD+SH +I E L + +M+K GYV TS VL D++EE K + L HSE+LA+AF
Sbjct: 597 SGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 656
Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
++ T PGT IR+ KN+R+C DCH A KFISKI REI+VRD RFHHF
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHF 704
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 161/324 (49%), Gaps = 39/324 (12%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M G P+ +P VLK+C + DL G+SVHG +++ D++ N L++MY G
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155
Query: 61 -----------------------------------GIELGRKVFDEMSERDSVSWSAMIG 85
GI+ R+VF+ M +D VS++ +I
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215
Query: 86 GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
GYA+ G+ DA+ + R+M + + PD T+ +VL ++ + GK + ++ ++ ++
Sbjct: 216 GYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS 275
Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205
V + ++L+DM+AK ++ + ++F + R +SW S++AG +GR EA+ LF +M+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGR 264
A V P VAF ++ AC+H + G++ ++ FG I +VDM + G
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGN 393
Query: 265 VKEAHEFIQKMPIEANPIIWRTLI 288
+K A + +M + + + W +I
Sbjct: 394 IKAARKIFDRMNV-LDEVSWTAII 416
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 3/193 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ V P + V+ ACA + L+LGK +HG VL+ FG +I + + LV MY C G
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC-G 392
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
I+ RK+FD M+ D VSW+A+I G+A G +A+ LF +M+ GV P+++ V VL+
Sbjct: 393 NIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 452
Query: 121 ACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
AC+ +G + E + S + +N+ + A+ D+ + G +++A M
Sbjct: 453 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG 512
Query: 180 S-WTSVIAGLAMH 191
S W+++++ ++H
Sbjct: 513 SVWSTLLSSCSVH 525
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 38/276 (13%)
Query: 69 FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
F + ++W ++I + L + A+ F +M+ SG CPD +VL +CT + L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAK-----------------------CGD--- 162
G+ V FI + ++ + NAL++M+AK GD
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 163 ----------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
+D ++F M + +VS+ ++IAG A G +A+ + EM + PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
+L S V KG+E + GI + +VDM +S R++++
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
++ + I W +L++ G A + ++++
Sbjct: 301 SRLYCR-DGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE 196
FI Q ++ + + +I ++ + +AL LF+++ +++W SVI +
Sbjct: 31 FIRTQSLSHTSA--SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSK 88
Query: 197 AVALFEEMLEAGVPPDDVAFVGLLSACS 224
A+A F EM +G PD F +L +C+
Sbjct: 89 ALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/481 (40%), Positives = 301/481 (62%), Gaps = 7/481 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG 56
M GV ++FTY +VLKAC + L GK +H + + + +++ TLV MY
Sbjct: 169 MNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA 228
Query: 57 SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEIT 114
G ++ VF M R+ VSWSAMI YA+ G + +A+ FR+M + P+ +T
Sbjct: 229 RF-GCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 115 MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174
MV+VL AC L ALE GK + +I ++ ++ + + +AL+ M+ +CG ++ ++F M+
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347
Query: 175 GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
R +VSW S+I+ +HG G +A+ +FEEML G P V FV +L ACSH GLV++G+
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
F++M D GI P+IEHY CMVD+L R+ R+ EA + +Q M E P +W +L+ +C
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467
Query: 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTL 354
G ++LAE ++RL EP + NYVLL+ IYA+ W++ +++++++ RG++K+PG
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527
Query: 355 IELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN 414
+E+ ++Y FV D+ + ++I+ L ++ MK+ GY+P T VL ++ E+KE +
Sbjct: 528 MEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVL 587
Query: 415 KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
HSEKLA+AF L+ T G PIRI KNLR+C DCH TKFISK +EI+VRD +RFH FK
Sbjct: 588 GHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFK 647
Query: 475 D 475
+
Sbjct: 648 N 648
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 25/318 (7%)
Query: 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
SP++ TY ++ C L+ VH +L D + L+ MY G ++ R
Sbjct: 74 SPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL-GSVDYAR 132
Query: 67 KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT--- 123
KVFD+ +R W+A+ G + + L+ +M GV D T VL AC
Sbjct: 133 KVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASE 192
Query: 124 -DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
+ L GK + + + ++ + V + L+DM+A+ G VD A +F M R +VSW+
Sbjct: 193 CTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWS 252
Query: 183 SVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKG-------- 232
++IA A +G+ EA+ F EM+ P+ V V +L AC+ +++G
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYIL 312
Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
R DS I+P I +V M R G+++ +M + + + W +LIS+
Sbjct: 313 RRGLDS------ILPVI---SALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYG 362
Query: 293 ARGELKLAESITKRLIGN 310
G K A I + ++ N
Sbjct: 363 VHGYGKKAIQIFEEMLAN 380
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/432 (43%), Positives = 279/432 (64%), Gaps = 1/432 (0%)
Query: 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
++ NT++ Y C G I + +FD+M +RD VSW+AMI GY++ G S +A+ LF QM
Sbjct: 342 NVSTWNTMITGYAQC-GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
+ G + + + LS C D+ ALE+GK + + K + NAL+ M+ KCG +
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
++A LF+ M G+ IVSW ++IAG + HG G A+ FE M G+ PDD V +LSAC
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520
Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
SH GLVDKGR+YF +M D+G++P +HY CMVD+L R+G +++AH ++ MP E + I
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAI 580
Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
W TL+ A G +LAE+ ++ EP + YVLLS++YA RW K+R M
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
+G+KK+PG + IE+ N+ + F GD+ H + EI+ L+E+ +MKKAGYV TS VL D
Sbjct: 641 KGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHD 700
Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
+ EE+KE + HSE+LA+A+ +++ G PIR++KNLRVC DCH+A K++++I R I+
Sbjct: 701 VEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLII 760
Query: 464 VRDRHRFHHFKD 475
+RD +RFHHFKD
Sbjct: 761 LRDNNRFHHFKD 772
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 3/186 (1%)
Query: 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
N+ ++ L CA + L LGK +HG ++K + V N L+ MY C G IE +
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-GSIEEANDL 466
Query: 69 FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
F EM+ +D VSW+ MI GY+R G A+ F M+ G+ PD+ TMV VLSAC+ G +
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 129 EVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS-WTSVIA 186
+ G+ + + + V + ++D+ + G ++ A L ++M + W +++
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 187 GLAMHG 192
+HG
Sbjct: 587 ASRVHG 592
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 30/280 (10%)
Query: 40 QFGDDIHVQ-----NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94
QF D ++V+ NT++ Y G I+ R++FDE +D +W+AM+ GY + +
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQ-SGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVE 298
Query: 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
+A +LF +M +E++ +L+ +E+ K E F M R+V N +I
Sbjct: 299 EARELFDKMPER----NEVSWNAMLAGYVQGERMEMAK--ELF--DVMPCRNVSTWNTMI 350
Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
+A+CG + +A LF M R VSW ++IAG + G EA+ LF +M G +
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410
Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD-----MLCRSGRVKEAH 269
+F LS C+ ++ G++ ++ GC V M C+ G ++EA+
Sbjct: 411 SFSSALSTCADVVALELGKQLHGR------LVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 270 EFIQKMPIEANPIIWRTLISACCARG----ELKLAESITK 305
+ ++M + + + W T+I+ G L+ ES+ +
Sbjct: 465 DLFKEMAGK-DIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 64/290 (22%)
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G EL RK+FDEM ERD VSW+ MI GY R A +LF M VC + T+L
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC----SWNTML 164
Query: 120 SACTDLGALEVGK-------------W---VESFIE-----------KQMVNRSVGLCNA 152
S G ++ + W + ++++ K N ++ N
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224
Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212
L+ F K + +A + F SMN R +VSW ++I G A G+ EA LF+E P
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE-----SPVQ 279
Query: 213 DV-AFVGLLSACSHCGLVDKGREYFDSM------------------------KNDFGIIP 247
DV + ++S +V++ RE FD M K F ++P
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339
Query: 248 --KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
+ + M+ + G++ EA KMP + +P+ W +I+ G
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 388
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 141/308 (45%), Gaps = 30/308 (9%)
Query: 74 ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133
+ D W+ I Y R G +A+ +F++M ++ ++S G E+ +
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELAR- 115
Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
+ +M R + N +I + + ++ KA +LF M R + SW ++++G A +G
Sbjct: 116 ---KLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172
Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
+A ++F+ M E +DV++ LLSA +++ F S +N + ++ +
Sbjct: 173 VDDARSVFDRMPE----KNDVSWNALLSAYVQNSKMEEACMLFKSREN-WALVS----WN 223
Query: 254 CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313
C++ + ++ EA +F M + + + W T+I+ G++ A ++L P+
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEA----RQLFDESPV 278
Query: 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQ 373
+ + + + ++ + RE+ D K+P + + + +V G++
Sbjct: 279 QD--VFTWTAMVSGYIQNRMVEEARELFD-----KMPERNEVSWNAMLAGYVQGER-MEM 330
Query: 374 SKEIYEML 381
+KE+++++
Sbjct: 331 AKELFDVM 338
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 298/487 (61%), Gaps = 13/487 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-------GDDIHVQNTLVH 53
ML G+ PN+ T VL CA +G L GK +H +K+ GD+ V N L+
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415
Query: 54 MYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVC 109
MY C+ ++ R +FD +S ERD V+W+ MIGGY++ G + A++L +M +
Sbjct: 416 MYAKCKK-VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474
Query: 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALK 168
P+ T+ L AC L AL +GK + ++ + N + + N LIDM+AKCG + A
Sbjct: 475 PNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARL 534
Query: 169 LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228
+F +M + V+WTS++ G MHG G EA+ +F+EM G D V + +L ACSH G+
Sbjct: 535 VFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGM 594
Query: 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
+D+G EYF+ MK FG+ P EHY C+VD+L R+GR+ A I++MP+E P++W +
Sbjct: 595 IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFL 654
Query: 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348
S C G+++L E +++ H+ +Y LLS++YA RW+ T+IR +M +G+KK
Sbjct: 655 SCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKK 714
Query: 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEED 408
PG + +E F GDK+H +KEIY++L + +++K GYVP T L D+++E+
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774
Query: 409 KEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRH 468
K+D L +HSEKLA+A+ +L TP G IRI KNLRVC DCH+A ++S+I + +I++RD
Sbjct: 775 KDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSS 834
Query: 469 RFHHFKD 475
RFHHFK+
Sbjct: 835 RFHHFKN 841
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 48/339 (14%)
Query: 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGR 66
+P+ +T+PFV KAC I + G+S H L F ++ V N LV MY C + R
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS-LSDAR 182
Query: 67 KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDL 125
KVFDEMS D VSW+++I YA+LG A+++F +M C PD IT+V VL C L
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASL 242
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
G +GK + F + +++ + N L+DM+AKCG +D+A +F +M+ + +VSW +++
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302
Query: 186 AGLAMHGRGLEAVALFE-----------------------------------EMLEAGVP 210
AG + GR +AV LFE +ML +G+
Sbjct: 303 AGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362
Query: 211 PDDVAFVGLLSACSHCGLVDKGREY--------FDSMKNDFGIIPKIEHYGCMVDMLCRS 262
P++V + +LS C+ G + G+E D KN G + + ++DM +
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQ--LIDMYAKC 420
Query: 263 GRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLA 300
+V A + P E + + W +I G+ A
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 50/335 (14%)
Query: 3 EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI 62
E+G P+ T VL CA +G +LGK +H + + ++ V N LV MY C G +
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC-GMM 280
Query: 63 ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF---------------------- 100
+ VF MS +D VSW+AM+ GY+++G DA+ LF
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340
Query: 101 -------------RQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN-RS 146
RQM SG+ P+E+T+++VLS C +GAL GK + + K ++ R
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400
Query: 147 VG------LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAV 198
G + N LIDM+AKC VD A +F S++ R +V+WT +I G + HG +A+
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460
Query: 199 ALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCM 255
L EM E P+ L AC+ + G++ + +++N +P C+
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCL 519
Query: 256 VDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
+DM + G + +A M + N + W +L++
Sbjct: 520 IDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTG 553
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 17/310 (5%)
Query: 4 YGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GSCEG 60
+ S + T PF+ K C I + L +H +L F +++ + L+ Y G
Sbjct: 23 FSTSAPEITPPFIHK-CKTISQVKL---IHQKLLSFGI-LTLNLTSHLISTYISVGCLSH 77
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ L R+ S+ W+++I Y G + + LF M PD T V
Sbjct: 78 AVSLLRRF--PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFK 135
Query: 121 ACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
AC ++ ++ G+ S + + N VG NAL+ M+++C + A K+F M+ +
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVG--NALVAMYSRCRSLSDARKVFDEMSVWDV 193
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
VSW S+I A G+ A+ +F M E G PD++ V +L C+ G G++
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ-LH 252
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
+I + C+VDM + G + EA+ M ++ + + W +++ G
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRF 311
Query: 298 KLAESITKRL 307
+ A + +++
Sbjct: 312 EDAVRLFEKM 321
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/505 (39%), Positives = 311/505 (61%), Gaps = 31/505 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
M++ GV P++ + + +C+ + ++ GKS HG VL+ F ++ N L+ MY C
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHR 387
Query: 59 ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G ++ + F+ M E++ VSW+ +I G +
Sbjct: 388 QDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQG 447
Query: 91 GLSTDAIDLFRQMQIS-GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
L +AI++F MQ GV D +TM+++ SAC LGAL++ KW+ +IEK + V L
Sbjct: 448 SLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
L+DMF++CGD + A+ +F S+ R + +WT+ I +AM G A+ LF++M+E G+
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567
Query: 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269
PD VAFVG L+ACSH GLV +G+E F SM G+ P+ HYGCMVD+L R+G ++EA
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627
Query: 270 EFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329
+ I+ MP+E N +IW +L++AC +G +++A +++ P +YVLLS++YA
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687
Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
RW K+R M ++G++K PG++ I++ + +EF GD+SH + I MLDE+ ++
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRAS 747
Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
G+VP S VL+D++E++K L++HSEKLA+A+ L+ + GT IRIVKNLRVC+DCHS
Sbjct: 748 HLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHS 807
Query: 450 ATKFISKIYNREIVVRDRHRFHHFK 474
KF SK+YNREI++RD +RFH+ +
Sbjct: 808 FAKFASKVYNREIILRDNNRFHYIR 832
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 170/321 (52%), Gaps = 33/321 (10%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ G+SP+K+T+PF L ACA G +HG ++K + D+ VQN+LVH Y C G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAEC-G 183
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF-RQMQISGVCPDEITMVTVL 119
++ RKVFDEMSER+ VSW++MI GYAR + DA+DLF R ++ V P+ +TMV V+
Sbjct: 184 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVI 243
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
SAC L LE G+ V +FI + + + +AL+DM+ KC +D A +LF +
Sbjct: 244 SACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLD 303
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGL 228
++ + G EA+ +F M+++GV PD ++ + +S+CS H +
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYV 363
Query: 229 VDKGREYFDSMKN--------------DFGIIPKIEH-----YGCMVDMLCRSGRVKEAH 269
+ G E +D++ N F I ++ + + +V +G V A
Sbjct: 364 LRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW 423
Query: 270 EFIQKMPIEANPIIWRTLISA 290
E + MP E N + W T+IS
Sbjct: 424 ETFETMP-EKNIVSWNTIISG 443
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 36/303 (11%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V+PN T V+ ACA + DL G+ V+ + + + + LV MY C I++
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA-IDVA 290
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+++FDE + +AM Y R GL+ +A+ +F M SGV PD I+M++ +S+C+ L
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
+ GK ++ + +CNALIDM+ KC D A ++F M+ +T+V+W S++
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410
Query: 186 AGLAMHGR------------------------GLEAVALFEEMLEA--------GVPPDD 213
AG +G GL +LFEE +E GV D
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470
Query: 214 VAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
V + + SAC H G +D + Y+ KN GI + +VDM R G + A
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIF 528
Query: 273 QKM 275
+
Sbjct: 529 NSL 531
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 12/267 (4%)
Query: 14 PFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG----IELGRKVF 69
P LK C I +L K H ++ K +D+ LV SCE G + ++VF
Sbjct: 36 PSSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVAR--SCELGTRESLSFAKEVF 90
Query: 70 DEMSERDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
+ + ++++I GYA GL +AI LF +M SG+ PD+ T LSAC A
Sbjct: 91 ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150
Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188
G + I K + + + N+L+ +A+CG++D A K+F M+ R +VSWTS+I G
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210
Query: 189 AMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247
A +AV LF M+ + V P+ V V ++SAC+ ++ G + + ++N GI
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEV 269
Query: 248 KIEHYGCMVDMLCRSGRVKEAHEFIQK 274
+VDM + + A +
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDE 296
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/474 (39%), Positives = 291/474 (61%), Gaps = 1/474 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML+ G+ ++ + ACAG+ L G+ +H F D+ QN LV +Y C G
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRC-G 640
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
IE F++ D+++W+A++ G+ + G + +A+ +F +M G+ + T + +
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
A ++ ++ GK V + I K + +CNALI M+AKCG + A K F ++ + VS
Sbjct: 701 AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W ++I + HG G EA+ F++M+ + V P+ V VG+LSACSH GLVDKG YF+SM
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+++G+ PK EHY C+VDML R+G + A EFIQ+MPI+ + ++WRTL+SAC +++
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E L+ EP + YVLLS++YA +W+ + R+ M ++G+KK PG + IE+ N
Sbjct: 881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
I+ F GD++H + EI+E ++ ++ + GYV +L ++ E K+ + HSEKL
Sbjct: 941 IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 1000
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
AI+F LL P PI ++KNLRVCNDCH+ KF+SK+ NREI+VRD +RFHHF+
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 4/322 (1%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G+ P+ T ++ AC+ G L G+ +H K F + ++ L+++Y C IE
Sbjct: 384 GLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC-ADIET 442
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
F E + V W+ M+ Y L ++ +FRQMQI + P++ T ++L C
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
LG LE+G+ + S I K + +C+ LIDM+AK G +D A + G+ +VSWT++
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562
Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
IAG + +A+ F +ML+ G+ D+V +SAC+ + +G++ + G
Sbjct: 563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 621
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
+ +V + R G+++E++ ++ N I W L+S G + A +
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVF 680
Query: 305 KRLIGNEPMHESNYVLLSHIYA 326
R+ E + +N+ S + A
Sbjct: 681 VRM-NREGIDNNNFTFGSAVKA 701
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 156/292 (53%), Gaps = 6/292 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKAC-AGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
M+ V+PN+ T+ VL+AC G ++ + +H +L D V N L+ +Y S
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLY-SRN 235
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G ++L R+VFD + +D SW AMI G ++ +AI LF M + G+ P +VL
Sbjct: 236 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 295
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
SAC + +LE+G+ + + K + +CNAL+ ++ G++ A +F +M+ R V
Sbjct: 296 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDS 238
++ ++I GL+ G G +A+ LF+ M G+ PD L+ ACS G + +G++ + +
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
K F KIE G ++++ + ++ A ++ + +E N ++W ++ A
Sbjct: 416 TKLGFASNNKIE--GALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 146/293 (49%), Gaps = 9/293 (3%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M G+ P + + VL AC I L +G+ +HG VLK F D +V N LV +Y G
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL-G 337
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ +F MS+RD+V+++ +I G ++ G A++LF++M + G+ PD T+ +++
Sbjct: 338 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 397
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC+ G L G+ + ++ K + + AL++++AKC D++ AL F +V
Sbjct: 398 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS-M 239
W ++ + + +F +M + P+ + +L C G ++ G + +
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 240 KNDFGIIPKIEHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
K +F ++ Y C ++DM + G++ A + + + + + W T+I+
Sbjct: 518 KTNF----QLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 565
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 19/318 (5%)
Query: 5 GVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
G+ PN T ++L+ C G L+ G+ +H +LK + + L Y +G +
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY-LFKGDLY 137
Query: 64 LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
KVFDEM ER +W+ MI A L + LF +M V P+E T VL AC
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 197
Query: 124 DLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
A +V + + + I Q + S +CN LID++++ G VD A ++F + + SW
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
++I+GL+ + EA+ LF +M G+ P AF +LSAC ++ G +
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL------- 310
Query: 243 FGIIPKI----EHYGC--MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
G++ K+ + Y C +V + G + A M + + + + TLI+ G
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGY 369
Query: 297 LKLAESITKR--LIGNEP 312
+ A + KR L G EP
Sbjct: 370 GEKAMELFKRMHLDGLEP 387
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/453 (44%), Positives = 289/453 (63%), Gaps = 6/453 (1%)
Query: 28 LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGG 86
LGK +HG LK D+ +N L+ YG C G ++ K+F M+ER D+V+W++MI G
Sbjct: 535 LGKQIHGLALKNNIADEATTENALIACYGKC-GEMDGCEKIFSRMAERRDNVTWNSMISG 593
Query: 87 YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
Y L A+DL M +G D TVLSA + LE G V + + +
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653
Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM-L 205
V + +AL+DM++KCG +D AL+ F +M R SW S+I+G A HG+G EA+ LFE M L
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKL 713
Query: 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
+ PPD V FVG+LSACSH GL+++G ++F+SM + +G+ P+IEH+ CM D+L R+G +
Sbjct: 714 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGEL 773
Query: 266 KEAHEFIQKMPIEANPIIWRTLISACC-ARG-ELKLAESITKRLIGNEPMHESNYVLLSH 323
+ +FI+KMP++ N +IWRT++ ACC A G + +L + + L EP + NYVLL +
Sbjct: 774 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 833
Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
+YA RWE K R+ M +KK G + + + + ++ FV GDKSH + IY+ L E
Sbjct: 834 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 893
Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGT-PIRIVKNLR 442
+ RKM+ AGYVP T L D+ +E+KE+ L+ HSEKLA+AF L T PIRI+KNLR
Sbjct: 894 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 953
Query: 443 VCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
VC DCHSA K+ISKI R+I++RD +RFHHF+D
Sbjct: 954 VCGDCHSAFKYISKIEGRQIILRDSNRFHHFQD 986
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 151/325 (46%), Gaps = 11/325 (3%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + + P FT L +CA + LG+ +HG LK ++ V N L+ +Y G
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE-TG 464
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVL 119
+ RK+F M E D VSW+++IG AR S +A+ F Q +G + IT +VL
Sbjct: 465 YLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVL 524
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM-NGRTI 178
SA + L E+GK + K + NALI + KCG++D K+F M R
Sbjct: 525 SAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDN 584
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
V+W S+I+G + +A+ L ML+ G D + +LSA + +++G E +
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGME-VHA 643
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE-- 296
+ + +VDM + GR+ A F MP+ N W ++IS G+
Sbjct: 644 CSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGYARHGQGE 702
Query: 297 --LKLAESITKRLIGNEPMHESNYV 319
LKL E T +L G P +V
Sbjct: 703 EALKLFE--TMKLDGQTPPDHVTFV 725
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 137/268 (51%), Gaps = 6/268 (2%)
Query: 26 LNLGKSVHGAVLKFQFGDD-IHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
L G+ VHG V+ D + + N LV+MY C G I R+VF M+++DSVSW++MI
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC-GSIADARRVFYFMTDKDSVSWNSMI 387
Query: 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
G + G +A++ ++ M+ + P T+++ LS+C L ++G+ + K ++
Sbjct: 388 TGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGID 447
Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL-EAVALFEE 203
+V + NAL+ ++A+ G +++ K+F SM VSW S+I LA R L EAV F
Sbjct: 448 LNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLN 507
Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRS 262
AG + + F +LSA S + G++ ++KN+ E+ ++ +
Sbjct: 508 AQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKC 565
Query: 263 GRVKEAHEFIQKMPIEANPIIWRTLISA 290
G + + +M + + W ++IS
Sbjct: 566 GEMDGCEKIFSRMAERRDNVTWNSMISG 593
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 144/301 (47%), Gaps = 15/301 (4%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNL--GKSVHGAVLKFQFGDDIHVQNTLVHMYGSC 58
M++ G+ N++ + VL+AC IG + + G+ +HG + K + D V N L+ MY C
Sbjct: 93 MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152
Query: 59 EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
G + F ++ ++SVSW+++I Y++ G A +F MQ G P E T ++
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212
Query: 119 LSACTDLGALEVG--KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
++ L +V + + I+K + + + + L+ FAK G + A K+F M R
Sbjct: 213 VTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR 272
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVD----- 230
V+ ++ GL G EA LF +M V P+ ++V LLS+ L +
Sbjct: 273 NAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLK 330
Query: 231 KGREYFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
KGRE + G++ + G +V+M + G + +A M + + + W ++I+
Sbjct: 331 KGREVHGHVITT-GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMIT 388
Query: 290 A 290
Sbjct: 389 G 389
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML+ G + F Y VL A A + L G VH ++ D+ V + LV MY C G
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC-G 668
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVL 119
++ + F+ M R+S SW++MI GYAR G +A+ LF M++ G PD +T V VL
Sbjct: 669 RLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVL 728
Query: 120 SACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T 177
SAC+ G LE G K ES + + + + + D+ + G++DK M +
Sbjct: 729 SACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPN 788
Query: 178 IVSWTSVI-AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219
++ W +V+ A +GR E EML P + V +V L
Sbjct: 789 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLL 831
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 46/348 (13%)
Query: 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSA 82
+G + H + K + D+++ N L++ Y + RKVFDEM R+ VSW+
Sbjct: 14 VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVS-ARKVFDEMPLRNCVSWAC 72
Query: 83 MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV--GKWVESFIEK 140
++ GY+R G +A+ R M G+ ++ V+VL AC ++G++ + G+ + + K
Sbjct: 73 IVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFK 132
Query: 141 QMVNRSVGLCNALIDMFAKC-GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199
+ N LI M+ KC G V AL F + + VSW S+I+ + G A
Sbjct: 133 LSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFR 192
Query: 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259
+F M G P + F L++ + C L + + I+ I+ G + D+
Sbjct: 193 IFSSMQYDGSRPTEYTFGSLVT--TACSLTEPDVRLLEQ------IMCTIQKSGLLTDLF 244
Query: 260 CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
SG L+SA G L A + + M N V
Sbjct: 245 VGSG-----------------------LVSAFAKSGSLSYARKVFNQ------METRNAV 275
Query: 320 LLSHIYAKLLR--W-EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
L+ + L+R W E+ TK+ MD M + + + L + E+
Sbjct: 276 TLNGLMVGLVRQKWGEEATKL--FMDMNSMIDVSPESYVILLSSFPEY 321
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/534 (40%), Positives = 309/534 (57%), Gaps = 65/534 (12%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P+ F++ FV+KA L G +H LK + V TL+ MYG C G +E
Sbjct: 102 VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC-GCVEFA 160
Query: 66 RKVFDEMSE-------------------------------RDSVSWSAMIGGYARLG--- 91
RKVFDEM + R+ SW+ M+ GY + G
Sbjct: 161 RKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELE 220
Query: 92 ----------------LST------------DAIDLFRQMQISGVCPDEITMVTVLSACT 123
ST ++ FR++Q +G+ P+E+++ VLSAC+
Sbjct: 221 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 280
Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWT 182
G+ E GK + F+EK + V + NALIDM+++CG+V A +F M R IVSWT
Sbjct: 281 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 340
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
S+IAGLAMHG+G EAV LF EM GV PD ++F+ LL ACSH GL+++G +YF MK
Sbjct: 341 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRV 400
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
+ I P+IEHYGCMVD+ RSG++++A++FI +MPI I+WRTL+ AC + G ++LAE
Sbjct: 401 YHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 460
Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
+ +RL +P + + VLLS+ YA +W+ IR+ M + +KK +L+E+ +Y
Sbjct: 461 VKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 520
Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGYVPTTSEVLLDINEEDKEDALNKHSEKLA 421
+F G+K E +E L E+ ++K +AGY P + L D+ EE+KED ++KHSEKLA
Sbjct: 521 KFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLA 580
Query: 422 IAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
+AFAL + G IRIVKNLR+C DCH+ K SK+Y EI+VRDR+RFH FKD
Sbjct: 581 LAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKD 634
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G+SPN+ + VL AC+ G GK +HG V K + + V N L+ MY C G + +
Sbjct: 264 GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC-GNVPM 322
Query: 65 GRKVFDEMSE-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
R VF+ M E R VSW++MI G A G +A+ LF +M GV PD I+ +++L AC+
Sbjct: 323 ARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACS 382
Query: 124 DLGALEVGKWVESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIV 179
G +E G+ + F E + V + ++D++ + G + KA M T +
Sbjct: 383 HAGLIEEGE--DYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAI 440
Query: 180 SWTSVIAGLAMHG 192
W +++ + HG
Sbjct: 441 VWRTLLGACSSHG 453
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 17/291 (5%)
Query: 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV-HMYGSCEGGIELGRKVFDEMSE 74
+L +C + L +HG +K+ D + L+ H S + R++ E
Sbjct: 11 LLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 67
Query: 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKW 133
D+ ++ ++ GY+ +++ +F +M G V PD + V+ A + +L G
Sbjct: 68 PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127
Query: 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193
+ K + + + LI M+ CG V+ A K+F M+ +V+W +VI
Sbjct: 128 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187
Query: 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253
A +F++ML +V G + A G ++ + F M + + +
Sbjct: 188 VAGAREIFDKMLVRNHTSWNVMLAGYIKA----GELESAKRIFSEMPHRDDV-----SWS 238
Query: 254 CMVDMLCRSGRVKEAHEF---IQKMPIEANPIIWRTLISACCARGELKLAE 301
M+ + +G E+ + +Q+ + N + ++SAC G + +
Sbjct: 239 TMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 289
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/512 (39%), Positives = 303/512 (59%), Gaps = 38/512 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY---GS 57
M + V P++ ++ AC G++ ++++ +++ D H+ LV MY G
Sbjct: 203 MKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGC 262
Query: 58 CEGGIELGRK---------------------------VFDEMSERDSVSWSAMIGGYARL 90
+ E RK +FD+ ++D V W+ MI Y
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
+A+ +F +M SG+ PD ++M +V+SAC +LG L+ KWV S I + + +
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
NALI+M+AKCG +D +F M R +VSW+S+I L+MHG +A++LF M + V
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
P++V FVG+L CSH GLV++G++ F SM +++ I PK+EHYGCMVD+ R+ ++EA E
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALE 502
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
I+ MP+ +N +IW +L+SAC GEL+L + KR++ EP H+ VL+S+IYA+ R
Sbjct: 503 VIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQR 562
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
WE IR VM+++ + K G + I+ + + +EF+ GDK H QS EIY LDE+ K+K
Sbjct: 563 WEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKL 622
Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALL-------KTPPGTPIRIVKNLRV 443
AGYVP VL+D+ EE+K+D + HSEKLA+ F L+ K G IRIVKNLRV
Sbjct: 623 AGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRV 681
Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
C DCH K +SK+Y REI+VRDR RFH +K+
Sbjct: 682 CEDCHLFFKLVSKVYEREIIVRDRTRFHCYKN 713
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 34/330 (10%)
Query: 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKV 68
++F++ +LKA + + L G +HG K D V+ + MY SC G I R V
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASC-GRINYARNV 168
Query: 69 FDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128
FDEMS RD V+W+ MI Y R GL +A LF +M+ S V PDE+ + ++SAC G +
Sbjct: 169 FDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 228
Query: 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT----------- 177
+ + F+ + V L AL+ M+A G +D A + FR M+ R
Sbjct: 229 RYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGY 288
Query: 178 --------------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217
+V WT++I+ EA+ +FEEM +G+ PD V+
Sbjct: 289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF 348
Query: 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277
++SAC++ G++DK + + S + G+ ++ +++M + G + + +KMP
Sbjct: 349 SVISACANLGILDKAK-WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP- 406
Query: 278 EANPIIWRTLISACCARGELKLAESITKRL 307
N + W ++I+A GE A S+ R+
Sbjct: 407 RRNVVSWSSMINALSMHGEASDALSLFARM 436
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/510 (38%), Positives = 301/510 (59%), Gaps = 40/510 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLK---FQFGDDIHVQNTLVHMYGS 57
M+ G+ ++FTYP V++ACA G L LGK VH VL+ F F H N+LV +Y
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF----HFDNSLVSLYYK 332
Query: 58 CEGGIELGRKVFDEMSERDSVSWSAMIGGY------------------------------ 87
C G + R +F++M +D VSW+A++ GY
Sbjct: 333 C-GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISG 391
Query: 88 -ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146
A G + + LF M+ G P + + +C LGA G+ + + K + S
Sbjct: 392 LAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSS 451
Query: 147 VGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206
+ NALI M+AKCG V++A ++FR+M VSW ++IA L HG G EAV ++EEML+
Sbjct: 452 LSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLK 511
Query: 207 AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266
G+ PD + + +L+ACSH GLVD+GR+YFDSM+ + I P +HY ++D+LCRSG+
Sbjct: 512 KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFS 571
Query: 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326
+A I+ +P + IW L+S C G ++L +L G P H+ Y+LLS+++A
Sbjct: 572 DAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHA 631
Query: 327 KLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386
+WE+ ++R++M RG+KK + IE++ +++ F+ D SH +++ +Y L ++G+
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGK 691
Query: 387 KMKKAGYVPTTSEVLLDINEE-DKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCN 445
+M++ GYVP TS VL D+ + KED L HSEK+A+AF L+K PPGT IRI KNLR C
Sbjct: 692 EMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751
Query: 446 DCHSATKFISKIYNREIVVRDRHRFHHFKD 475
DCH+ +F+S + R+I++RDR RFHHF++
Sbjct: 752 DCHNFFRFLSWVVQRDIILRDRKRFHHFRN 781
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 150/358 (41%), Gaps = 70/358 (19%)
Query: 5 GVSPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIE 63
G P+ FT+ VL A + D H A LK G V N LV +Y C
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202
Query: 64 L---GRKVFDEMSERDSVSWS--------------------------------AMIGGYA 88
L RKVFDE+ E+D SW+ AMI GY
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262
Query: 89 RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
G +A+++ R+M SG+ DE T +V+ AC G L++GK V +++ ++ + S
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFH 321
Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV------------------------ 184
N+L+ ++ KCG D+A +F M + +VSW ++
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381
Query: 185 -------IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
I+GLA +G G E + LF M G P D AF G + +C+ G G++Y
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHA 441
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
+ G + ++ M + G V+EA + + MP + + W LI+A G
Sbjct: 442 QLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHG 497
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 150/357 (42%), Gaps = 84/357 (23%)
Query: 26 LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG-IELGRKVFDEMSE---------- 74
L L ++VHG ++ F F H+ N L+ +Y C+ + R++FDE+SE
Sbjct: 30 LQLARAVHGNIITFGFQPRAHILNRLIDVY--CKSSELNYARQLFDEISEPDKIARTTMV 87
Query: 75 -----------------------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD 111
RD+V ++AMI G++ AI+LF +M+ G PD
Sbjct: 88 SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147
Query: 112 EITMVTVLSACTDLGALEVGKWVE--SFIEKQMVNRSVGLCNALIDMFAKCGD----VDK 165
T +VL+ L A + + V+ + K + NAL+ +++KC +
Sbjct: 148 NFTFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHS 206
Query: 166 ALKLFRSMNGRTIVSWTSVIAGLAMHG------------------------------RGL 195
A K+F + + SWT+++ G +G RG
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGF 266
Query: 196 --EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM--KNDFGIIPKIEH 251
EA+ + M+ +G+ D+ + ++ AC+ GL+ G++ + + DF H
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----H 321
Query: 252 Y-GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
+ +V + + G+ EA +KMP + + + W L+S + G + A+ I K +
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEM 377
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 295/476 (61%), Gaps = 2/476 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E G+SP+ +T VL CA L+ GK VH + + G DI V N L+ MY C G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC-G 446
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
++ VF EM +D +SW+ +IGGY++ + +A+ LF + + PDE T+ VL
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
AC L A + G+ + +I + + N+L+DM+AKCG + A LF + + +V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
SWT +IAG MHG G EA+ALF +M +AG+ D+++FV LL ACSH GLVD+G +F+ M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
+++ I P +EHY C+VDML R+G + +A+ FI+ MPI + IW L+ C ++KL
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
AE + +++ EP + YVL+++IYA+ +WE+ ++R+ + +RG++K PG + IE+
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
+ FV GD S+ +++ I L ++ +M + GY P T L+D E +KE+AL HSEK
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
LA+A ++ + G IR+ KNLRVC DCH KF+SK+ REIV+RD +RFH FKD
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 171/289 (59%), Gaps = 5/289 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ GV + +T+ V K+ + + ++ G+ +HG +LK FG+ V N+LV Y +
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 245
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ RKVFDEM+ERD +SW+++I GY GL+ + +F QM +SG+ D T+V+V +
Sbjct: 246 -VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
C D + +G+ V S K +R CN L+DM++KCGD+D A +FR M+ R++VS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
+TS+IAG A G EAV LFEEM E G+ PD +L+ C+ L+D+G+ + +K
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424
Query: 241 -NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
ND G + + ++DM + G ++EA +M ++ + I W T+I
Sbjct: 425 ENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 6/292 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML G+ + T V CA ++LG++VH +K F + NTL+ MY C G
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC-G 345
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ + VF EMS+R VS+++MI GYAR GL+ +A+ LF +M+ G+ PD T+ VL+
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
C L+ GK V +I++ + + + NAL+DM+AKCG + +A +F M + I+S
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFDS- 238
W ++I G + + EA++LF +LE PD+ +L AC+ DKGRE
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
M+N G +VDM + G + AH + + + W +I+
Sbjct: 526 MRN--GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAG 574
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 33/314 (10%)
Query: 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER 75
VL+ CA L GK V + F D ++ + L MY +C G ++ +VFDE+
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNC-GDLKEASRVFDEVKIE 158
Query: 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVE 135
++ W+ ++ A+ G + +I LF++M SGV D T V + + L ++ G+ +
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218
Query: 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195
FI K + N+L+ + K VD A K+F M R ++SW S+I G +G
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278
Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY-------------------- 235
+ +++F +ML +G+ D V + + C+ L+ GR
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 338
Query: 236 --------FDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIW 284
DS K F + + Y M+ R G EA + ++M E +P ++
Sbjct: 339 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398
Query: 285 R-TLISACCARGEL 297
T + CCAR L
Sbjct: 399 TVTAVLNCCARYRL 412
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 4/186 (2%)
Query: 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF 170
D T+ +VL C D +L+ GK V++FI L + L M+ CGD+ +A ++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 171 RSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
+ + W ++ LA G ++ LF++M+ +GV D F + + S V
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 231 KGREYFDS-MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
G + +K+ FG + + +V ++ RV A + +M E + I W ++I+
Sbjct: 213 GGEQLHGFILKSGFGERNSVGN--SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIIN 269
Query: 290 ACCARG 295
+ G
Sbjct: 270 GYVSNG 275
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/483 (41%), Positives = 299/483 (61%), Gaps = 13/483 (2%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G+ N T V+ AC G + +++HG V+K D VQNTL+ MY G I++
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL-GKIDI 458
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ-----IS------GVCPDEI 113
++F +M +RD V+W+ MI GY DA+ L +MQ +S + P+ I
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518
Query: 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173
T++T+L +C L AL GK + ++ K + V + +AL+DM+AKCG + + K+F +
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578
Query: 174 NGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233
+ +++W +I MHG G EA+ L M+ GV P++V F+ + +ACSH G+VD+G
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPI-IWRTLISACC 292
F MK D+G+ P +HY C+VD+L R+GR+KEA++ + MP + N W +L+ A
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698
Query: 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGS 352
L++ E + LI EP S+YVLL++IY+ W+K T++R M ++G++K PG
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 758
Query: 353 TLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDA 412
+ IE +E+++FV GD SH QS+++ L+ + +M+K GYVP TS VL ++ E++KE
Sbjct: 759 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 818
Query: 413 LNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
L HSEKLAIAF +L T PGT IR+ KNLRVCNDCH ATKFISKI +REI++RD RFH
Sbjct: 819 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 878
Query: 473 FKD 475
FK+
Sbjct: 879 FKN 881
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 13/297 (4%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFG-DDIHVQNTLVHMYGSCE 59
M+ G+ P+ + +P +LKA A + D+ LGK +H V KF +G D + V NTLV++Y C
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC- 146
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G KVFD +SER+ VSW+++I A++ FR M V P T+V+V+
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 206
Query: 120 SACTDLG---ALEVGKWVESF-IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
+AC++L L +GK V ++ + K +N + N L+ M+ K G + + L S G
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGG 264
Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE- 234
R +V+W +V++ L + + LEA+ EM+ GV PD+ +L ACSH ++ G+E
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Query: 235 YFDSMKNDFGIIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
+ ++KN G + + G +VDM C +V M + +W +I+
Sbjct: 325 HAYALKN--GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 18/304 (5%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCE 59
M+ GV P++FT VL AC+ + L GK +H LK ++ V + LV MY +C+
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDEITMVTV 118
+ GR+VFD M +R W+AMI GY++ +A+ LF M+ S G+ + TM V
Sbjct: 353 QVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
+ AC GA + + F+ K+ ++R + N L+DM+++ G +D A+++F M R +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEM--LEAGVP---------PDDVAFVGLLSACSHCG 227
V+W ++I G +A+ L +M LE V P+ + + +L +C+
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531
Query: 228 LVDKGRE-YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286
+ KG+E + ++KN+ + +VDM + G ++ + + ++P + N I W
Sbjct: 532 ALAKGKEIHAYAIKNNLAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNV 588
Query: 287 LISA 290
+I A
Sbjct: 589 IIMA 592
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 36/276 (13%)
Query: 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139
W ++ R L +A+ + M + G+ PD +L A DL +E+GK + + +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 140 KQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
K SV + N L++++ KCGD K+F ++ R VSW S+I+ L + A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMK----NDFGIIPKIE 250
F ML+ V P V +++ACS+ GL+ + + ++ N F I +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244
Query: 251 HYG------------------------CMVDMLCRSGRVKEAHEFIQKM---PIEANPII 283
YG ++ LC++ ++ EA E++++M +E +
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304
Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319
+++ AC L+ + + + N + E+++V
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC 254
EAV + +M+ G+ PD+ AF LL A + ++ G++ + K +G + +
Sbjct: 80 EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYG-VDSVTVANT 138
Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314
+V++ + G ++ ++ E N + W +LIS+ C+ + ++A + ++ +E +
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DENVE 196
Query: 315 ESNYVLLSHIYA 326
S++ L+S + A
Sbjct: 197 PSSFTLVSVVTA 208
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 292/475 (61%), Gaps = 2/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML +G SPN+FT V+KA A G +HG +K F ++HV + L+ +Y + G
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY-TRYG 210
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ + VFD + R+ VSW+A+I G+AR + A++LF+ M G P + ++
Sbjct: 211 LMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFG 270
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC+ G LE GKWV +++ K N L+DM+AK G + A K+F + R +VS
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W S++ A HG G EAV FEEM G+ P++++F+ +L+ACSH GL+D+G Y++ MK
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
D GI+P+ HY +VD+L R+G + A FI++MPIE IW+ L++AC +L
Sbjct: 391 KD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
+ + +P +V+L +IYA RW ++R+ M + G+KK P + +E++N
Sbjct: 450 AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENA 509
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
I+ FV D+ H Q +EI +E+ K+K+ GYVP TS V++ ++++++E L HSEK+
Sbjct: 510 IHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKI 569
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
A+AFALL TPPG+ I I KN+RVC DCH+A K SK+ REI+VRD +RFHHFKD
Sbjct: 570 ALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 3/290 (1%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
+ ++ Y +LK C L G+ VH +L+ F DI + NTL++MY C G +E
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-GSLEEA 114
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
RKVF++M +RD V+W+ +I GY++ DA+ F QM G P+E T+ +V+ A
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAE 174
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
G + F K + +V + +AL+D++ + G +D A +F ++ R VSW ++I
Sbjct: 175 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 234
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
AG A +A+ LF+ ML G P ++ L ACS G +++G+ M
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 294
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
+ ++DM +SG + +A + ++ + + + W +L++A G
Sbjct: 295 LVAFAG-NTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHG 342
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 30/277 (10%)
Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
T+L CT L G+ V + I + + + + N L++M+AKCG +++A K+F M R
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-----CGLVDK 231
V+WT++I+G + H R +A+ F +ML G P++ ++ A + CG
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184
Query: 232 G---REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
G + FDS + ++D+ R G + +A + N + W LI
Sbjct: 185 GFCVKCGFDS---------NVHVGSALLDLYTRYGLMDDAQLVFDALE-SRNDVSWNALI 234
Query: 289 SACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
+ R + A + + ++ G P H S Y L + E+ + M K G
Sbjct: 235 AGHARRSGTEKALELFQGMLRDGFRPSHFS-YASLFGACSSTGFLEQGKWVHAYMIKSGE 293
Query: 347 KKI--PGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
K + G+TL+++ S H +++I++ L
Sbjct: 294 KLVAFAGNTLLDM-------YAKSGSIHDARKIFDRL 323
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/472 (41%), Positives = 294/472 (62%), Gaps = 3/472 (0%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIEL 64
+ P+ T + + +GD+ +SV G L K F +DI + N +V MY G ++
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL-GLVDS 402
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEITMVTVLSACT 123
R VF+ + D +SW+ +I GYA+ G +++AI+++ M+ G + ++ T V+VL AC+
Sbjct: 403 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 462
Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
GAL G + + K + V + +L DM+ KCG ++ AL LF + V W +
Sbjct: 463 QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT 522
Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
+IA HG G +AV LF+EML+ GV PD + FV LLSACSH GLVD+G+ F+ M+ D+
Sbjct: 523 LIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDY 582
Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
GI P ++HYGCMVDM R+G+++ A +FI+ M ++ + IW L+SAC G + L +
Sbjct: 583 GITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIA 642
Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
++ L EP H +VLLS++YA +WE +IR + +G++K PG + +E+DN++
Sbjct: 643 SEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEV 702
Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
F G+++H +E+Y L + K+K GYVP VL D+ +++KE L HSE+LAIA
Sbjct: 703 FYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIA 762
Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
FAL+ TP T IRI KNLRVC DCHS TKFISKI REI+VRD +RFHHFK+
Sbjct: 763 FALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 814
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 196/423 (46%), Gaps = 60/423 (14%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML G++P+ T+P VLKAC + D G +H LKF F D++V +L+H+Y +
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ R +FDEM RD SW+AMI GY + G + +A+ L ++ D +T+V++LS
Sbjct: 201 -VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLS 255
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
ACT+ G G + S+ K + + + N LID++A+ G + K+F M R ++S
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE------ 234
W S+I ++ + L A++LF+EM + + PD + + L S S G + R
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375
Query: 235 ---YF--------------------DSMKNDFGIIPKIE--HYGCMVDMLCRSGRVKEAH 269
+F DS + F +P + + ++ ++G EA
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 435
Query: 270 EFIQKM----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL--LSH 323
E M I AN W +++ AC G L+ + RL+ N ++ +V+ L+
Sbjct: 436 EMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLAD 494
Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIY---EM 380
+Y K R E + + + + +P +TLI C H K + EM
Sbjct: 495 MYGKCGRLEDALSLFYQIPR--VNSVPWNTLI---------ACHGFHGHGEKAVMLFKEM 543
Query: 381 LDE 383
LDE
Sbjct: 544 LDE 546
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 11/267 (4%)
Query: 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
+L K +H ++ + ++ + LV++Y G + L R FD + RD +W+ MI
Sbjct: 66 NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYL-GNVALARHTFDHIQNRDVYAWNLMI 124
Query: 85 GGYARLGLSTDAIDLFRQMQI-SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMV 143
GY R G S++ I F + SG+ PD T +VL AC + G + K
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGF 181
Query: 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203
V + +LI ++++ V A LF M R + SW ++I+G G EA+ L
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG 241
Query: 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
+ D V V LLSAC+ G ++G S G+ ++ ++D+ G
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFG 296
Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISA 290
R+++ + +M + + I W ++I A
Sbjct: 297 RLRDCQKVFDRMYVR-DLISWNSIIKA 322
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/504 (41%), Positives = 296/504 (58%), Gaps = 35/504 (6%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
+SP++FT VL ACA + L +GK +H ++ F V N L+ MY C GG+E
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC-GGVETA 333
Query: 66 RK---------------------------------VFDEMSERDSVSWSAMIGGYARLGL 92
R+ +F + +RD V+W+AMI GY + G
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 93 STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA 152
+AI+LFR M G P+ T+ +LS + L +L GK + K SV + NA
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 153 LIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211
LI M+AK G++ A + F + R VSWTS+I LA HG EA+ LFE ML G+ P
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513
Query: 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271
D + +VG+ SAC+H GLV++GR+YFD MK+ IIP + HY CMVD+ R+G ++EA EF
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573
Query: 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331
I+KMPIE + + W +L+SAC + L + +RL+ EP + Y L+++Y+ +W
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633
Query: 332 EKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKA 391
E+ KIR+ M +KK G + IE+ ++++ F D +H + EIY + ++ ++KK
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693
Query: 392 GYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSAT 451
GYVP T+ VL D+ EE KE L HSEKLAIAF L+ TP T +RI+KNLRVCNDCH+A
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753
Query: 452 KFISKIYNREIVVRDRHRFHHFKD 475
KFISK+ REI+VRD RFHHFKD
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKD 777
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 167/380 (43%), Gaps = 67/380 (17%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
M++ G+ P +FT VL + A + GK VH ++K ++ V N+L++MY C
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196
Query: 60 -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G ++L F++M+ERD V+W++MI G+ +
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 91 GLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
G A+D+F +M + S + PD T+ +VLSAC +L L +GK + S I + S +
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316
Query: 150 CNALIDMFAKC---------------------------------GDVDKALKLFRSMNGR 176
NALI M+++C GD+++A +F S+ R
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 376
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
+V+WT++I G HG EA+ LF M+ G P+ +LS S + G++
Sbjct: 377 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 436
Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
S G I + ++ M ++G + A + E + + W ++I A G
Sbjct: 437 GSAVKS-GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495
Query: 297 LKLAESITKRLI--GNEPMH 314
+ A + + ++ G P H
Sbjct: 496 AEEALELFETMLMEGLRPDH 515
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 49 NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
NT++ Y S G ++ + FD++ +RDSVSW+ MI GY +G AI + M G+
Sbjct: 84 NTVLSAY-SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI 142
Query: 109 CPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD------ 162
P + T+ VL++ +E GK V SFI K + +V + N+L++M+AKCGD
Sbjct: 143 EPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKF 202
Query: 163 -------------------------VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
+D A+ F M R IV+W S+I+G G L A
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262
Query: 198 VALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256
+ +F +ML ++ + PD +LSAC++ + G++ + I I ++
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV-LNALI 321
Query: 257 DMLCRSGRVKEAHEFIQK 274
M R G V+ A I++
Sbjct: 322 SMYSRCGGVETARRLIEQ 339
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ G PN +T +L + + L+ GK +HG+ +K + V N L+ MY G
Sbjct: 404 MVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKA-G 462
Query: 61 GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
I + FD + ERD+VSW++MI A+ G + +A++LF M + G+ PD IT V V
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 120 SACTDLGALEVGK-WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT- 177
SACT G + G+ + + + + ++ ++D+F + G + +A + M
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
+V+W S+++ +H + ++ + E L P + A+ L + S CG ++ +
Sbjct: 583 VVTWGSLLSACRVH-KNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641
Query: 238 SMKN 241
SMK+
Sbjct: 642 SMKD 645
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL 200
+M R+ N ++ ++K GD+D + F + R VSWT++I G G+ +A+ +
Sbjct: 74 EMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133
Query: 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260
+M++ G+ P +L++ + ++ G++ S G+ + +++M
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK-VHSFIVKLGLRGNVSVSNSLLNMYA 192
Query: 261 RSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ G A +M + + W +I+ G++ LA
Sbjct: 193 KCGDPMMAKFVFDRMVVR-DISSWNAMIALHMQVGQMDLA 231
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 22/214 (10%)
Query: 109 CPDEITMVTVLSACTDLGALEV----GKWVESFIEKQMVNR----SVGLCNALIDMFAKC 160
P +++ T+L CT+L V G++ + +++ SV L N L+++++K
Sbjct: 3 APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62
Query: 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220
G A KLF M RT SW +V++ + G F+++ + D V++ ++
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQ----RDSVSWTTMI 118
Query: 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV------KEAHEFIQK 274
+ G K M + GI P + ++L K+ H FI K
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKE-GIEPT---QFTLTNVLASVAATRCMETGKKVHSFIVK 174
Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLI 308
+ + N + +L++ G+ +A+ + R++
Sbjct: 175 LGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV 208
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/414 (44%), Positives = 271/414 (65%), Gaps = 5/414 (1%)
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
+ +F +M ++ VSW+ MIG Y + + +A++L+ +M+ G PD +++ +VL AC D
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
AL +GK + +IE++ + ++ L NALIDM+AKCG ++KA +F +M R +VSWT++I
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMI 382
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
+ GRG +AVALF ++ ++G+ PD +AFV L+ACSH GL+++GR F M + + I
Sbjct: 383 SAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 442
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
P++EH CMVD+L R+G+VKEA+ FIQ M +E N +W L+ AC + +
Sbjct: 443 TPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAAD 502
Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
+L P YVLLS+IYAK RWE+ T IR +M +G+KK PG++ +E++ I+ F+
Sbjct: 503 KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFL 562
Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
GD+SH QS EIY LD + +KMK+ GYVP + L D+ EEDKE L HSEKLAI FA
Sbjct: 563 VGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFA 622
Query: 426 LLKTP-----PGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
L+ T IRI KNLR+C DCH A K IS+I +REI++RD +RFH F+
Sbjct: 623 LMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 19/226 (8%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G P+ + VL AC L+LGK +HG + + + ++ ++N L+ MY C G +E
Sbjct: 304 GFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC-GCLEK 362
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
R VF+ M RD VSW+AMI Y G DA+ LF ++Q SG+ PD I VT L+AC+
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422
Query: 125 LGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSM----NGRTIV 179
G LE G+ + + + ++D+ + G V +A + + M N R
Sbjct: 423 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV-- 480
Query: 180 SWTSVIAGLAMHGRG----LEAVALFEEMLEAGVPPDDVAFVGLLS 221
W +++ +H L A LF+ + P+ + LLS
Sbjct: 481 -WGALLGACRVHSDTDIGLLAADKLFQ------LAPEQSGYYVLLS 519
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 16/328 (4%)
Query: 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84
D+ ++VH ++ + + L+ Y S + + RKVFDE+ ER+ + + MI
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKD-VASARKVFDEIPERNVIIINVMI 112
Query: 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144
Y G + + +F M V PD T VL AC+ G + +G+ + K ++
Sbjct: 113 RSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLS 172
Query: 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204
++ + N L+ M+ KCG + +A + M+ R +VSW S++ G A + R +A+ + EM
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232
Query: 205 LEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264
+ D LL A S+ + Y M G + + M+ + ++
Sbjct: 233 ESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAM 289
Query: 265 VKEAHEFIQKMP---IEANPIIWRTLISACCARGELKLAESI-----TKRLIGNEPMHES 316
EA E +M E + + +++ AC L L + I K+LI N + +
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349
Query: 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344
L +YAK EK + E M R
Sbjct: 350 ----LIDMYAKCGCLEKARDVFENMKSR 373
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/472 (38%), Positives = 289/472 (61%), Gaps = 2/472 (0%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G F + +L A + L +G+ +H L +HV N+LV MY CE E
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM-FEE 404
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
+F + +R +VSW+A+I GY + GL + LF +M+ S + D+ T TVL A
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASAS 464
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
+L +GK + +FI + +V + L+DM+AKCG + A+++F M R VSW ++
Sbjct: 465 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNAL 524
Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
I+ A +G G A+ F +M+E+G+ PD V+ +G+L+ACSHCG V++G EYF +M +G
Sbjct: 525 ISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYG 584
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
I PK +HY CM+D+L R+GR EA + + +MP E + I+W ++++AC LAE
Sbjct: 585 ITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAA 644
Query: 305 KRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
++L E + + + YV +S+IYA WEK +++ M +RG+KK+P + +E++++I+
Sbjct: 645 EKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHV 704
Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
F D++H EI ++E+ ++++ GY P TS V+ D++E+ K ++L HSE+LA+A
Sbjct: 705 FSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVA 764
Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
FAL+ TP G PI ++KNLR C DCH+A K ISKI REI VRD RFHHF +
Sbjct: 765 FALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSE 816
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 9/299 (3%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + G P+ FT+ VLKA G+ D LG+ +H + F D V N ++ Y +
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E R +FDEM E D VS++ +I Y++ ++ FR+MQ G T+LS
Sbjct: 301 VLET-RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+L +L++G+ + + + + N+L+DM+AKC ++A +F+S+ RT VS
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS 419
Query: 181 WTSVIAGL---AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
WT++I+G +HG GL+ LF +M + + D F +L A + + G++
Sbjct: 420 WTALISGYVQKGLHGAGLK---LFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA 476
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
+ G + + +VDM + G +K+A + ++MP + N + W LISA G+
Sbjct: 477 FIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGD 533
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 9/292 (3%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD--IHVQNTLVHMYGSCE-GGIEL 64
P+ T+ +L C N VH +K F + + V N L+ Y CE ++L
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY--CEVRRLDL 202
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
+F+E+ E+DSV+++ +I GY + GL T++I LF +M+ SG P + T VL A
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
L +G+ + + +R + N ++D ++K V + LF M VS+ V
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322
Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
I+ + + ++ F EM G + F +LS ++ + GR+ +
Sbjct: 323 ISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL--HCQALLA 380
Query: 245 IIPKIEHYG-CMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
I H G +VDM + +EA + +P + + W LIS +G
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALISGYVQKG 431
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 8/236 (3%)
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVT 117
G + R +FD M +R V+W+ ++G YAR +A LFRQM S C PD +T T
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152
Query: 118 VLSACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
+L C D V +F K N + + N L+ + + +D A LF +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212
Query: 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-E 234
+ V++ ++I G G E++ LF +M ++G P D F G+L A GL D +
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQ 270
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
++ G ++D + RV E +MP E + + + +IS+
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP-ELDFVSYNVVISS 325
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 138 IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197
+ +M +++ N +I K GDV A LF +M RT+V+WT ++ A + EA
Sbjct: 70 VYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEA 129
Query: 198 VALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDK-GREYFDSMKNDFGIIPKIEHYGC 254
LF +M + PD V F LL C+ + G+ + ++K F P +
Sbjct: 130 FKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNV 189
Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289
++ C R+ A +++P E + + + TLI+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIP-EKDSVTFNTLIT 223
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 295/474 (62%), Gaps = 6/474 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M GV PN+FTY +L A I VH V+K + V L+ Y G
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL-G 442
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E KVF + ++D V+WSAM+ GYA+ G + AI +F ++ G+ P+E T ++L+
Sbjct: 443 KVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILN 502
Query: 121 ACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
C A + GK F K ++ S+ + +AL+ M+AK G+++ A ++F+ + +V
Sbjct: 503 VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV 562
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
SW S+I+G A HG+ ++A+ +F+EM + V D V F+G+ +AC+H GLV++G +YFD M
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
D I P EH CMVD+ R+G++++A + I+ MP A IWRT+++AC + +L
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTEL 682
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
+++I +P + YVLLS++YA+ W+++ K+R++M++R +KK PG + IE+ N
Sbjct: 683 GRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
+ Y F+ GD+SH +IY L+++ ++K GY P TS VL DI++E KE L +HSE+
Sbjct: 743 KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSER 802
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
LAIAF L+ TP G+P+ I+KNLRVC DCH K I+KI REIVVRD +RFHHF
Sbjct: 803 LAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHF 856
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 16/233 (6%)
Query: 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLV--HMYGSCEGGIELGRKVFD 70
+ VLK A + D G+ +H +KF F DD+ V +LV +M GS + GRKVFD
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS---NFKDGRKVFD 152
Query: 71 EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130
EM ER+ V+W+ +I GYAR ++ + + LF +MQ G P+ T L + G
Sbjct: 153 EMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212
Query: 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAM 190
G V + + K +++++ + N+LI+++ KCG+V KA LF +++V+W S+I+G A
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS-----------HCGLVDKG 232
+G LEA+ +F M V + +F ++ C+ HC +V G
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 8/301 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M G PN FT+ L A G G VH V+K I V N+L+++Y C G
Sbjct: 185 MQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC-G 243
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ R +FD+ + V+W++MI GYA GL +A+ +F M+++ V E + +V+
Sbjct: 244 NVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIK 303
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-RTIV 179
C +L L + + + K + AL+ ++KC + AL+LF+ + +V
Sbjct: 304 LCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVV 363
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
SWT++I+G + EAV LF EM GV P++ + +L+A ++ + +
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVV 420
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
K ++ + ++D + G+V+EA + + + + + W +++ GE +
Sbjct: 421 KTNYERSSTVGT--ALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGETEA 477
Query: 300 A 300
A
Sbjct: 478 A 478
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 296/475 (62%), Gaps = 6/475 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML V PN +TY VL++C G+ D+ + +H ++K D+ V++ L+ ++ G
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKL-G 208
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
E VFDEM D++ W+++IGG+A+ S A++LF++M+ +G ++ T+ +VL
Sbjct: 209 EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
ACT L LE+G I K ++ + L NAL+DM+ KCG ++ AL++F M R +++
Sbjct: 269 ACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVIT 326
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W+++I+GLA +G EA+ LFE M +G P+ + VG+L ACSH GL++ G YF SMK
Sbjct: 327 WSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+GI P EHYGCM+D+L ++G++ +A + + +M E + + WRTL+ AC + + LA
Sbjct: 387 KLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLA 446
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E K++I +P Y LLS+IYA +W+ +IR M RG+KK PG + IE++ +
Sbjct: 447 EYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
I+ F+ GD SH Q E+ + L+++ ++ GYVP T+ VL D+ E ED+L HSEKL
Sbjct: 507 IHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKL 566
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
A+AF L+ P IRI KNLR+C DCH K SK+ R IV+RD R+HHF+D
Sbjct: 567 ALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQD 621
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)
Query: 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD---AIDLFRQMQISGVCPDEITMVTV 118
I+L R V S + ++ + RL D A+ +Q G+ D T +
Sbjct: 8 IKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSEL 67
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
+ C A+ G + + + L N LI+M+ K ++ A +LF M R +
Sbjct: 68 IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127
Query: 179 VSWTSVIAGLA---MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS--------HCG 227
+SWT++I+ + +H + LE + L ML V P+ + +L +C+ HCG
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG 184
Query: 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTL 287
++ +G E + ++D+ + G ++A +M + + I+W ++
Sbjct: 185 IIKEGLE------------SDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSI 231
Query: 288 ISACCARGELKLAESITKRL 307
I +A + KR+
Sbjct: 232 IGGFAQNSRSDVALELFKRM 251
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 291/477 (61%), Gaps = 3/477 (0%)
Query: 1 MLEYGVS-PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
ML VS P+ FT+ F LK+C I + +HG+V++ F DD V +LV Y S
Sbjct: 97 MLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCY-SAN 155
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G +E+ KVFDEM RD VSW+ MI ++ +GL A+ ++++M GVC D T+V +L
Sbjct: 156 GSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALL 215
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
S+C + AL +G + V + NALIDM+AKCG ++ A+ +F M R ++
Sbjct: 216 SSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVL 275
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
+W S+I G +HG G+EA++ F +M+ +GV P+ + F+GLL CSH GLV +G E+F+ M
Sbjct: 276 TWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIM 335
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
+ F + P ++HYGCMVD+ R+G+++ + E I +P++WRTL+ +C L+L
Sbjct: 336 SSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLEL 395
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
E K+L+ E + +YVL++ IY+ + +R+++ ++ +PG + IE+ +
Sbjct: 396 GEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGD 455
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSE-VLLDINEEDKEDALNKHSE 418
++++FV DK H +S IY L E+ + AGY P S +++ A HSE
Sbjct: 456 QVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSE 515
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIA+ L++T GT +RI KNLRVC DCHS TK++SK +NREI+VRDR RFHHF D
Sbjct: 516 KLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFAD 572
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 296/477 (62%), Gaps = 11/477 (2%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E GVS + T ++ C L LG+S+HG +K ++ V N+ + MY C G
Sbjct: 147 MKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC-G 205
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E GR++FDEM + ++W+A+I GY++ GL+ D ++L+ QM+ SGVCPD T+V+VLS
Sbjct: 206 SVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLS 265
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+C LGA ++G V +E +V + NA I M+A+CG++ KA +F M +++VS
Sbjct: 266 SCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS 325
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
WT++I MHG G + LF++M++ G+ PD FV +LSACSH GL DKG E F +MK
Sbjct: 326 WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
++ + P EHY C+VD+L R+GR+ EA EFI+ MP+E + +W L+ AC + +A
Sbjct: 386 REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMA 445
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E ++I EP + YVL+S+IY+ E +IR +M +R +K PG + +E
Sbjct: 446 ELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGR 505
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRK-MKKAGYVPTTSEVLLDINE-EDKEDALNKHSE 418
++ F+ GD+SH Q++E++ MLDE+ M+ AG +D + E+ +HSE
Sbjct: 506 VHLFLAGDRSHEQTEEVHRMLDELETSVMELAGN--------MDCDRGEEVSSTTREHSE 557
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
+LAIAF +L + PGT I ++KNLRVC DCH K +SKI +R+ VVRD RFH+FKD
Sbjct: 558 RLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKD 614
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 155/290 (53%), Gaps = 5/290 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML G SP+ F++PF+LK+CA + G+ +H V K + V L+ MY C G
Sbjct: 44 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKC-G 102
Query: 61 GIELGRKVFDE--MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
+ RKVF+E S + SV ++A+I GY TDA +FR+M+ +GV D +TM+ +
Sbjct: 103 LVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGL 162
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
+ CT L +G+ + K ++ V + N+ I M+ KCG V+ +LF M + +
Sbjct: 163 VPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGL 222
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
++W +VI+G + +G + + L+E+M +GV PD V +LS+C+H G G E
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
++++ G +P + + M R G + +A MP+++ + W +I
Sbjct: 283 VESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKS-LVSWTAMI 330
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 4/221 (1%)
Query: 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136
S W+ + A L +++I L+R M SG PD + +L +C L G+ +
Sbjct: 18 STPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 77
Query: 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF--RSMNGRTIVSWTSVIAGLAMHGRG 194
+ K + ALI M+ KCG V A K+F + + V + ++I+G + +
Sbjct: 78 HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137
Query: 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254
+A +F M E GV D V +GL+ C+ + GR G+ ++
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG-GLDSEVAVLNS 196
Query: 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
+ M + G V+ +MP++ I W +IS G
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKG-LITWNAVISGYSQNG 236
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 301/505 (59%), Gaps = 34/505 (6%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG-------- 56
G P++ T VL + LN+G+ +HG V+K D V + ++ MYG
Sbjct: 247 GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGI 306
Query: 57 ----------------------SCEGGIELGRKVFDEMSER----DSVSWSAMIGGYARL 90
S G ++ ++F+ E+ + VSW+++I G A+
Sbjct: 307 ISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQN 366
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
G +A++LFR+MQ++GV P+ +T+ ++L AC ++ AL G+ F + + +V +
Sbjct: 367 GKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVG 426
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
+ALIDM+AKCG ++ + +F M + +V W S++ G +MHG+ E +++FE ++ +
Sbjct: 427 SALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLK 486
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
PD ++F LLSAC GL D+G +YF M ++GI P++EHY CMV++L R+G+++EA++
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
I++MP E + +W L+++C + + LAE ++L EP + YVLLS+IYA
Sbjct: 547 LIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGM 606
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
W + IR M+ G+KK PG + I++ N +Y + GDKSH Q +I E +DE+ ++M+K
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRK 666
Query: 391 AGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSA 450
+G+ P L D+ E+++E L HSEKLA+ F LL TP GTP++++KNLR+C DCH+
Sbjct: 667 SGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAV 726
Query: 451 TKFISKIYNREIVVRDRHRFHHFKD 475
KFIS REI +RD +RFHHFKD
Sbjct: 727 IKFISSYAGREIFIRDTNRFHHFKD 751
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 166/378 (43%), Gaps = 73/378 (19%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M +G+ P+ P + K CA + +GK +H D VQ ++ HMY C G
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC-G 165
Query: 61 GIELGRKVFDEMSERDSV-----------------------------------SWSAMIG 85
+ RKVFD MS++D V SW+ ++
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILS 225
Query: 86 GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ---- 141
G+ R G +A+ +F+++ G CPD++T+ +VL + D L +G+ + ++ KQ
Sbjct: 226 GFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLK 285
Query: 142 ----------MVNRS-----------------VGLCNALIDMFAKCGDVDKALKLFRSMN 174
M +S G+CNA I ++ G VDKAL++F
Sbjct: 286 DKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFK 345
Query: 175 GRT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230
+T +VSWTS+IAG A +G+ +EA+ LF EM AGV P+ V +L AC + +
Sbjct: 346 EQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG 405
Query: 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISA 290
GR ++ + ++DM + GR+ + MP + N + W +L++
Sbjct: 406 HGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNG 463
Query: 291 CCARGELKLAESITKRLI 308
G+ K SI + L+
Sbjct: 464 FSMHGKAKEVMSIFESLM 481
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 73/334 (21%)
Query: 33 HGAVLKFQFGDDIHVQNTLVHMYGS--CEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
H +LK +D ++ L+ Y + C +L V + + S+S++I +
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADL---VLQSIPDPTIYSFSSLIYALTKA 94
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWV-----------ESFIE 139
L T +I +F +M G+ PD + + C +L A +VGK + ++F++
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 140 --------------------KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--- 176
+M ++ V C+AL+ +A+ G +++ +++ M
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 177 -TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR-- 233
IVSW +++G G EAV +F+++ G PD V +L + +++ GR
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 234 --------------------EYFDSMKNDFGIIPKIEHYGCMVDMLC--------RSGRV 265
+ + + +GII + M +C R+G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 266 KEA---HEFIQKMPIEANPIIWRTLISACCARGE 296
+A E ++ +E N + W ++I+ C G+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 297/501 (59%), Gaps = 35/501 (6%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
P+ F + ++KACA +G ++ G+ VH + ++ +D V+++LV MY C G + +
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKC-GLLNSAKA 161
Query: 68 VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----------ISGVCP------- 110
VFD + ++++SW+AM+ GYA+ G +A++LFR + ISG
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 221
Query: 111 ---------------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
D + + +++ AC +L A G+ V + + V + NALID
Sbjct: 222 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALID 281
Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
M+AKC DV A +F M R +VSWTS+I G+A HG+ +A+AL+++M+ GV P++V
Sbjct: 282 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 341
Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
FVGL+ ACSH G V+KGRE F SM D+GI P ++HY C++D+L RSG + EA I M
Sbjct: 342 FVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 401
Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKK 334
P + W L+SAC +G ++ I L+ + + + S Y+LLS+IYA W K
Sbjct: 402 PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKV 461
Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK-KAGY 393
++ R + + ++K PG + +E+ E F G+ SH ++I+ +L ++ +M+ + GY
Sbjct: 462 SEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGY 521
Query: 394 VPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKF 453
VP TS +L D++E++KE L HSE+ A+A+ LLK PGTPIRIVKNLRVC DCH K
Sbjct: 522 VPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKH 581
Query: 454 ISKIYNREIVVRDRHRFHHFK 474
IS+I REI+VRD R+HHFK
Sbjct: 582 ISEITEREIIVRDATRYHHFK 602
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 43/350 (12%)
Query: 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
Y L+ CA L K++H ++K + NTLV++YG C G +VFDEM
Sbjct: 6 YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC-GAASHALQVFDEM 64
Query: 73 SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVG 131
RD ++W++++ + LS + +F + S PD+ ++ AC +LG+++ G
Sbjct: 65 PHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHG 124
Query: 132 KWVE-SFIEKQMVNRSVGLCNALIDMFAKCGDVD-------------------------- 164
+ V FI + N V + ++L+DM+AKCG ++
Sbjct: 125 RQVHCHFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183
Query: 165 -----KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVG 218
+AL+LFR + + + SWT++I+G G+GLEA ++F EM V D +
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 243
Query: 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278
++ AC++ GR+ + G + ++DM + V A + +M
Sbjct: 244 IVGACANLAASIAGRQ-VHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR-H 301
Query: 279 ANPIIWRTLISACCARGELKLAESITKRLI--GNEPMHESNYVLLSHIYA 326
+ + W +LI G+ + A ++ ++ G +P +E +V L IYA
Sbjct: 302 RDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP-NEVTFVGL--IYA 348
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 34/131 (25%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ +GV PN+ T+ ++ AC+ +G + G+ + ++ K D ++ +L H
Sbjct: 330 MVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTK-----DYGIRPSLQH------- 377
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ ++ R GL +A +L M PDE T +LS
Sbjct: 378 -------------------YTCLLDLLGRSGLLDEAENLIHTMPFP---PDEPTWAALLS 415
Query: 121 ACTDLGALEVG 131
AC G ++G
Sbjct: 416 ACKRQGRGQMG 426
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/470 (39%), Positives = 290/470 (61%), Gaps = 3/470 (0%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
PN+FT+ VL +C L LGK +HG ++K+ + I V ++L+ MY G I+ R+
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA-GQIKEARE 209
Query: 68 VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127
+F+ + ERD VS +A+I GYA+LGL +A+++F ++ G+ P+ +T ++L+A + L
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269
Query: 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAG 187
L+ GK + ++ + L N+LIDM++KCG++ A +LF +M RT +SW +++ G
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329
Query: 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGI 245
+ HG G E + LF M E V PD V + +LS CSH + D G FD M ++G
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGT 389
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
P EHYGC+VDML R+GR+ EA EFI++MP + + +L+ AC + + ES+ +
Sbjct: 390 KPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGR 449
Query: 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFV 365
RLI EP + NYV+LS++YA RW +R +M ++ + K PG + I+ + ++ F
Sbjct: 450 RLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 509
Query: 366 CGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFA 425
D++H + +E+ + E+ KMK+AGYVP S VL D++EE KE L HSEKLA+ F
Sbjct: 510 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFG 569
Query: 426 LLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
L+ T G PIR+ KNLR+C DCH+ K SK++ RE+ +RD++RFH D
Sbjct: 570 LIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVD 619
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 150/277 (54%), Gaps = 5/277 (1%)
Query: 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72
Y +L AC L G+ VH ++K ++ +++ L+ YG C+ +E RKV DEM
Sbjct: 55 YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC-LEDARKVLDEM 113
Query: 73 SERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132
E++ VSW+AMI Y++ G S++A+ +F +M S P+E T TVL++C L +GK
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGK 173
Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
+ I K + + + ++L+DM+AK G + +A ++F + R +VS T++IAG A G
Sbjct: 174 QIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLG 233
Query: 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEH 251
EA+ +F + G+ P+ V + LL+A S L+D G++ + ++ + +++
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293
Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288
++DM + G + A MP E I W ++
Sbjct: 294 --SLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAML 327
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 291/475 (61%), Gaps = 2/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML+ GV P + L ACA +GDL G+ +H ++ ++ V N+L+ MY C+
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ +F ++ R VSW+AMI G+A+ G DA++ F QM+ V PD T V+V++
Sbjct: 388 -VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
A +L KW+ + + ++++V + AL+DM+AKCG + A +F M+ R + +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W ++I G HG G A+ LFEEM + + P+ V F+ ++SACSH GLV+ G + F MK
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
++ I ++HYG MVD+L R+GR+ EA +FI +MP++ ++ ++ AC + A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E +RL P +VLL++IY WEK ++R M ++G++K PG +++E+ NE
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
++ F G +H SK+IY L+++ +K+AGYVP T+ ++L + + KE L+ HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTN-LVLGVENDVKEQLLSTHSEKL 745
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AI+F LL T GT I + KNLRVC DCH+ATK+IS + REIVVRD RFHHFK+
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 153/290 (52%), Gaps = 3/290 (1%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P + + ++LK C +L +GK +HG ++K F D+ L +MY C +
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ-VNEA 189
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
RKVFD M ERD VSW+ ++ GY++ G++ A+++ + M + P IT+V+VL A + L
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
+ VGK + + + + V + AL+DM+AKCG ++ A +LF M R +VSW S+I
Sbjct: 250 RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245
+ EA+ +F++ML+ GV P DV+ +G L AC+ G +++GR + + + G+
Sbjct: 310 DAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGL 368
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295
+ ++ M C+ V A K+ + W +I G
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQ-SRTLVSWNAMILGFAQNG 417
Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 163/333 (48%), Gaps = 44/333 (13%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E + P+ T VL A + + +++GK +HG ++ F +++ LV MY C G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC-G 285
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E R++FD M ER+ VSW++MI Y + +A+ +F++M GV P +++++ L
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC DLG LE G+++ + ++R+V + N+LI M+ KC +VD A +F + RT+VS
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH--------------- 225
W ++I G A +GR ++A+ F +M V PD +V +++A +
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465
Query: 226 --------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265
CG + R FD M + + M+D G
Sbjct: 466 RSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER-----HVTTWNAMIDGYGTHGFG 520
Query: 266 KEAHEF---IQKMPIEANPIIWRTLISACCARG 295
K A E +QK I+ N + + ++ISAC G
Sbjct: 521 KAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 145/307 (47%), Gaps = 12/307 (3%)
Query: 6 VSPNKFTYP--FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GGI 62
+ N + +P +L+ C+ + +L + + V K + Q LV ++ C G +
Sbjct: 31 IPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLF--CRYGSV 85
Query: 63 ELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
+ +VF+ + + +V + M+ G+A++ A+ F +M+ V P +L C
Sbjct: 86 DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
D L VGK + + K + + L +M+AKC V++A K+F M R +VSW
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWN 205
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SMKN 241
+++AG + +G A+ + + M E + P + V +L A S L+ G+E +M++
Sbjct: 206 TIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS 265
Query: 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAE 301
F + I +VDM + G ++ A + M +E N + W ++I A K A
Sbjct: 266 GFDSLVNIS--TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAM 322
Query: 302 SITKRLI 308
I ++++
Sbjct: 323 LIFQKML 329
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/472 (38%), Positives = 293/472 (62%), Gaps = 2/472 (0%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G+ P+ FT +L AC+ + L LGK VHG +++ D+ V +++ +Y C G +
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC-GELCT 549
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
+ +FD M ++ VSW+ +I GY + G A+ +FRQM + G+ I+M+ V AC+
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 609
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
L +L +G+ ++ K ++ + +LIDM+AK G + ++ K+F + ++ SW ++
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 669
Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
I G +HG EA+ LFEEM G PDD+ F+G+L+AC+H GL+ +G Y D MK+ FG
Sbjct: 670 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFG 729
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESI 303
+ P ++HY C++DML R+G++ +A + ++M EA+ IW++L+S+C L++ E +
Sbjct: 730 LKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 789
Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
+L EP NYVLLS++YA L +WE K+R+ M++ ++K G + IEL+ +++
Sbjct: 790 AAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFS 849
Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
FV G++ +EI + + K+ K GY P T V D++EE+K + L HSEKLA+
Sbjct: 850 FVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALT 909
Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
+ L+KT GT IR+ KNLR+C DCH+A K ISK+ REIVVRD RFHHFK+
Sbjct: 910 YGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 961
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 8/243 (3%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
P+ FTYP V+KACAG+ D+ +G +VHG V+K +D+ V N LV YG+ G + +
Sbjct: 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGT-HGFVTDALQ 243
Query: 68 VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ----ISGVCPDEITMVTVLSACT 123
+FD M ER+ VSW++MI ++ G S ++ L +M PD T+VTVL C
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
+ +GK V + K +++ + L NAL+DM++KCG + A +F+ N + +VSW +
Sbjct: 304 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 363
Query: 184 VIAGLAMHGRGLEAVALFEEMLEAG--VPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMK 240
++ G + G + +ML G V D+V + + C H + +E + S+K
Sbjct: 364 MVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLK 423
Query: 241 NDF 243
+F
Sbjct: 424 QEF 426
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 137/261 (52%), Gaps = 7/261 (2%)
Query: 30 KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
K +H LK +F + V N V Y C G + ++VF + + SW+A+IGG+A+
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKC-GSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473
Query: 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
++D QM+ISG+ PD T+ ++LSAC+ L +L +GK V FI + + R + +
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 533
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
+++ ++ CG++ LF +M +++VSW +VI G +G A+ +F +M+ G+
Sbjct: 534 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
Query: 210 PPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDFGIIPKIEHYGC-MVDMLCRSGRVKE 267
++ + + ACS + GRE + ++K+ ++ C ++DM ++G + +
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQ 650
Query: 268 AHEFIQKMPIEANPIIWRTLI 288
+ + + E + W +I
Sbjct: 651 SSKVFNGLK-EKSTASWNAMI 670
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 3/229 (1%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
P+ T VL CA ++ LGK VHG +K + ++ + N L+ MY C G I +
Sbjct: 290 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC-GCITNAQM 348
Query: 68 VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--VCPDEITMVTVLSACTDL 125
+F + ++ VSW+ M+GG++ G + D+ RQM G V DE+T++ + C
Sbjct: 349 IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE 408
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
L K + + KQ + + NA + +AKCG + A ++F + +T+ SW ++I
Sbjct: 409 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468
Query: 186 AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
G A ++ +M +G+ PD LLSACS + G+E
Sbjct: 469 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 12/247 (4%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ YG+ + V AC+ + L LG+ H LK DD + +L+ MY G
Sbjct: 588 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK-NG 646
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
I KVF+ + E+ + SW+AMI GY GL+ +AI LF +MQ +G PD++T + VL+
Sbjct: 647 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 706
Query: 121 ACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF-RSMNGRTI 178
AC G + G ++++ + ++ +IDM + G +DKAL++ M+
Sbjct: 707 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 766
Query: 179 VS-WTSVIAGLAMHGRGLE-----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232
V W S+++ +H + LE A LFE LE P + V L + V K
Sbjct: 767 VGIWKSLLSSCRIH-QNLEMGEKVAAKLFE--LEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 233 REYFDSM 239
R+ + M
Sbjct: 824 RQRMNEM 830
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 16/320 (5%)
Query: 15 FVLKACAGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73
+L+A D+ +G+ +H V + +D + ++ MY C G + R VFD +
Sbjct: 89 LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMC-GSPDDSRFVFDALR 147
Query: 74 ERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSACTDLGALEVGK 132
++ W+A+I Y+R L + ++ F +M + + PD T V+ AC + + +G
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207
Query: 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHG 192
V + K + V + NAL+ + G V AL+LF M R +VSW S+I + +G
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNG 267
Query: 193 RGLEAVALFEEMLE----AGVPPDDVAFVGLLSACSH---CGLVDKGREYFDSMKNDFGI 245
E+ L EM+E PD V +L C+ GL + ++ D +
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKEL 327
Query: 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305
+ ++DM + G + A + I KM N + W T++ A G+ + +
Sbjct: 328 VLN----NALMDMYSKCGCITNA-QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLR 382
Query: 306 RLI-GNEPMHESNYVLLSHI 324
+++ G E + +L+ +
Sbjct: 383 QMLAGGEDVKADEVTILNAV 402
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 291/470 (61%), Gaps = 2/470 (0%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G SP+++T V AG+ +++G+ +HG +K+ D+ V ++L HMY G ++
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR-NGKLQD 229
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
G V M R+ V+W+ +I G A+ G + L++ M+ISG P++IT VTVLS+C+D
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
L G+ + + K + V + ++LI M++KCG + A K F V W+S+
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 349
Query: 185 IAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243
I+ HG+G EA+ LF M E + ++VAF+ LL ACSH GL DKG E FD M +
Sbjct: 350 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 409
Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
G P ++HY C+VD+L R+G + +A I+ MPI+ + +IW+TL+SAC ++A+ +
Sbjct: 410 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 469
Query: 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYE 363
K ++ +P + YVLL++++A RW +++R+ M + +KK G + E E+++
Sbjct: 470 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 529
Query: 364 FVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIA 423
F GD+S +SKEIY L E+ +MK GY P T+ VL D++EE+KE L +HSEKLA+A
Sbjct: 530 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 589
Query: 424 FALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
FAL+ P G PIRI+KNLRVC+DCH A K+IS I NREI +RD RFHHF
Sbjct: 590 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHF 639
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 157/323 (48%), Gaps = 9/323 (2%)
Query: 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIEL 64
G S +KF ++ + +GD +V+G + K + N L++ Y G +
Sbjct: 74 GFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSS----NILINGYVRA-GDLVN 128
Query: 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124
RKVFDEM +R +W+AMI G + + + + LFR+M G PDE T+ +V S
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 188
Query: 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSV 184
L ++ +G+ + + K + + + ++L M+ + G + + RSM R +V+W ++
Sbjct: 189 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 248
Query: 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSMKNDF 243
I G A +G + L++ M +G P+ + FV +LS+CS + +G++ + +++K
Sbjct: 249 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK--I 306
Query: 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESI 303
G + ++ M + G + +A + + E + ++W ++ISA G+ A +
Sbjct: 307 GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIEL 365
Query: 304 TKRLIGNEPMHESNYVLLSHIYA 326
+ M + L+ +YA
Sbjct: 366 FNTMAEQTNMEINEVAFLNLLYA 388
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 33/208 (15%)
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL----------- 167
+ +CT +L GK + + + +CN L+ M++K GD A+
Sbjct: 51 IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110
Query: 168 --------------------KLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
K+F M R + +W ++IAGL E ++LF EM
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170
Query: 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267
G PD+ + S + V G++ +G+ + + M R+G++++
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQ-IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229
Query: 268 AHEFIQKMPIEANPIIWRTLISACCARG 295
I+ MP+ N + W TLI G
Sbjct: 230 GEIVIRSMPVR-NLVAWNTLIMGNAQNG 256
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 291/475 (61%), Gaps = 2/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + V P+ VL A + DL G+S+H +V+K + + +L MY C G
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC-G 271
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ + +FD+M + + W+AMI GYA+ G + +AID+F +M V PD I++ + +S
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC +G+LE + + ++ + V + +ALIDMFAKCG V+ A +F R +V
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W+++I G +HGR EA++L+ M GV P+DV F+GLL AC+H G+V +G +F+ M
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
D I P+ +HY C++D+L R+G + +A+E I+ MP++ +W L+SAC ++L
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E ++L +P + +YV LS++YA W++ ++R M ++G+ K G + +E+
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
+ F GDKSH + +EI ++ + ++K+ G+V L D+N+E+ E+ L HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AIA+ L+ TP GTP+RI KNLR C +CH+ATK ISK+ +REIVVRD +RFHHFKD
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKD 685
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 165/305 (54%), Gaps = 7/305 (2%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
VSP+ FT+P +LKAC+G+ L +G+ VH V + F D+ VQN L+ +Y C +
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR-LGSA 173
Query: 66 RKVFD--EMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123
R VF+ + ER VSW+A++ YA+ G +A+++F QM+ V PD + +V+VL+A T
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT 233
Query: 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTS 183
L L+ G+ + + + K + L +L M+AKCG V A LF M ++ W +
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293
Query: 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KND 242
+I+G A +G EA+ +F EM+ V PD ++ +SAC+ G +++ R ++ + ++D
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
+ I ++DM + G V E + ++ + ++W +I G + A S
Sbjct: 354 YRDDVFIS--SALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410
Query: 303 ITKRL 307
+ + +
Sbjct: 411 LYRAM 415
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 48/315 (15%)
Query: 30 KSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYAR 89
K +H +L + L+H S G I R+VFD++ W+A+I GY+R
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHA-SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96
Query: 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
DA+ ++ MQ++ V PD T +L AC+ L L++G++V + + + + V +
Sbjct: 97 NNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFV 156
Query: 150 CNALIDMFAKCGDVDKALKLFRS--MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207
N LI ++AKC + A +F + RTIVSWT++++ A +G +EA+ +F +M +
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 208 GVPPDDVAFVGLLSACS-----------------------------------HCGLVDKG 232
V PD VA V +L+A + CG V
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276
Query: 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA----HEFIQKMPIEANPIIWRTLI 288
+ FD MK+ P + + M+ ++G +EA HE I K + + I + I
Sbjct: 277 KILFDKMKS-----PNLILWNAMISGYAKNGYAREAIDMFHEMINK-DVRPDTISITSAI 330
Query: 289 SACCARGELKLAESI 303
SAC G L+ A S+
Sbjct: 331 SACAQVGSLEQARSM 345
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/415 (42%), Positives = 271/415 (65%), Gaps = 34/415 (8%)
Query: 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRK 67
P+ FT+PFVLK + D+ G+ +HG V+ F F +HV L+ MY SC GG+ RK
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSC-GGLGDARK 172
Query: 68 VFDEMSERD---------------------------------SVSWSAMIGGYARLGLST 94
+FDEM +D VSW+ +I GYA+ G ++
Sbjct: 173 MFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRAS 232
Query: 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
+AI++F++M + V PDE+T++ VLSAC DLG+LE+G+ + S+++ + +NR+V L NA+I
Sbjct: 233 EAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVI 292
Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
DM+AK G++ KAL +F +N R +V+WT++IAGLA HG G EA+A+F M++AGV P+DV
Sbjct: 293 DMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDV 352
Query: 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274
F+ +LSACSH G VD G+ F+SM++ +GI P IEHYGCM+D+L R+G+++EA E I+
Sbjct: 353 TFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKS 412
Query: 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334
MP +AN IW +L++A +L+L E LI EP + NY+LL+++Y+ L RW++
Sbjct: 413 MPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 335 TKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389
+R +M G+KK+ G + IE++N +Y+F+ GD +H Q + I+E+L EM +++
Sbjct: 473 RMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 10/245 (4%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML V P++ T VL ACA +G L LG+ + V + + N ++ MY G
Sbjct: 241 MLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK-SG 299
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
I VF+ ++ER+ V+W+ +I G A G +A+ +F +M +GV P+++T + +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359
Query: 121 ACTDLGALEVGKWV-ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
AC+ +G +++GK + S K ++ ++ +ID+ + G + +A ++ +SM +
Sbjct: 360 ACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANA 419
Query: 180 S-WTSVIAGLAMHGRGLEAVALFEEMLEAGV---PPDDVAFVGLLSACSHCGLVDKGREY 235
+ W S++A +H + L E L + P + ++ L + S+ G D+ R
Sbjct: 420 AIWGSLLAASNVH----HDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475
Query: 236 FDSMK 240
+ MK
Sbjct: 476 RNMMK 480
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 96 AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
AI ++R++ PD T VL + + G+ + + + SV + LI
Sbjct: 100 AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQ 159
Query: 156 MFAKCGDVDKALKLFRSM--------NG-------------------------RTIVSWT 182
M+ CG + A K+F M N R VSWT
Sbjct: 160 MYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWT 219
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
VI+G A GR EA+ +F+ ML V PD+V + +LSAC+ G ++ G E S +
Sbjct: 220 CVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG-ERICSYVDH 278
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
G+ + ++DM +SG + +A + + + E N + W T+I+ G A +
Sbjct: 279 RGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGHGAEALA 337
Query: 303 ITKRLI 308
+ R++
Sbjct: 338 MFNRMV 343
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/413 (42%), Positives = 265/413 (64%), Gaps = 4/413 (0%)
Query: 64 LGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVLSAC 122
L +KV S+++ ++W+ MIGGY R +A+ + M + + P++ + + L+AC
Sbjct: 116 LAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAAC 175
Query: 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT 182
LG L KWV S + + + L +AL+D++AKCGD+ + ++F S+ + W
Sbjct: 176 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235
Query: 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242
++I G A HG EA+ +F EM V PD + F+GLL+ CSHCGL+++G+EYF M
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 295
Query: 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302
F I PK+EHYG MVD+L R+GRVKEA+E I+ MPIE + +IWR+L+S+ +L E
Sbjct: 296 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 355
Query: 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIY 362
+ L +YVLLS+IY+ +WE K+RE+M K G++K G + +E I+
Sbjct: 356 AIQNL---SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIH 412
Query: 363 EFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAI 422
F GD SH ++K IY++L+ + +K K G+V T VL+D++EE+KE+ LN HSEKLA+
Sbjct: 413 RFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLAL 472
Query: 423 AFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
A+ +LK+ PGT IRI KN+R+C+DCH+ K +SK+ NR I++RDR RFH F+D
Sbjct: 473 AYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFED 525
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
+ PNKF++ L ACA +GDL+ K VH ++ + + + LV +Y C G I
Sbjct: 161 IKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKC-GDIGTS 219
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
R+VF + D W+AMI G+A GL+T+AI +F +M+ V PD IT + +L+ C+
Sbjct: 220 REVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHC 279
Query: 126 GALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTS 183
G LE GK + ++ + + A++D+ + G V +A +L SM +V W S
Sbjct: 280 GLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRS 339
Query: 184 VIAG 187
+++
Sbjct: 340 LLSS 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,996,371
Number of Sequences: 539616
Number of extensions: 7687581
Number of successful extensions: 26394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 20392
Number of HSP's gapped (non-prelim): 2018
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)