Query 038542
Match_columns 475
No_of_seqs 613 out of 3542
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 12:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7E-103 1E-107 807.7 54.5 474 1-475 215-688 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 8E-100 2E-104 802.4 54.2 471 1-475 380-850 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 6.6E-62 1.4E-66 514.2 32.1 449 1-457 178-651 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-60 6.8E-65 490.2 38.6 442 5-464 118-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 3.6E-58 7.9E-63 478.3 40.9 448 8-464 435-913 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.2E-53 7E-58 441.4 42.2 390 7-410 367-767 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 2.3E-34 5E-39 221.5 8.2 106 351-474 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.7E-21 3.8E-26 209.5 39.9 329 8-345 531-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.1E-21 6.6E-26 207.5 39.3 332 7-345 462-800 (899)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.9E-25 182.8 30.9 293 54-351 44-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.5E-24 176.2 32.7 287 18-310 43-347 (389)
12 PRK15174 Vi polysaccharide exp 99.9 1.2E-17 2.5E-22 170.7 38.1 325 12-345 44-382 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 6E-17 1.3E-21 165.8 37.3 248 92-343 309-570 (615)
14 KOG4626 O-linked N-acetylgluco 99.8 5.4E-18 1.2E-22 159.0 25.9 325 11-344 117-485 (966)
15 PRK15174 Vi polysaccharide exp 99.8 2.8E-16 6.1E-21 160.6 37.1 298 11-315 77-386 (656)
16 TIGR00990 3a0801s09 mitochondr 99.8 2.3E-15 5E-20 154.1 38.2 359 13-386 130-570 (615)
17 PRK11447 cellulose synthase su 99.8 2.6E-15 5.6E-20 163.8 38.7 316 18-343 277-665 (1157)
18 PRK10049 pgaA outer membrane p 99.8 6E-15 1.3E-19 154.0 39.1 331 9-344 48-456 (765)
19 PRK11447 cellulose synthase su 99.8 1.1E-14 2.3E-19 159.0 40.4 252 82-343 466-739 (1157)
20 KOG4626 O-linked N-acetylgluco 99.7 1.1E-15 2.3E-20 143.8 25.7 281 47-336 220-511 (966)
21 PRK10049 pgaA outer membrane p 99.7 9.7E-14 2.1E-18 145.0 40.8 329 11-345 16-423 (765)
22 PRK09782 bacteriophage N4 rece 99.7 4.4E-13 9.6E-18 140.7 34.5 316 20-345 386-741 (987)
23 PRK14574 hmsH outer membrane p 99.6 5.9E-12 1.3E-16 129.7 39.0 325 17-344 109-513 (822)
24 PRK14574 hmsH outer membrane p 99.6 3.2E-12 6.9E-17 131.6 36.4 318 20-344 44-479 (822)
25 PRK09782 bacteriophage N4 rece 99.6 8.3E-12 1.8E-16 131.2 40.0 313 24-345 356-707 (987)
26 PF13429 TPR_15: Tetratricopep 99.6 1.2E-15 2.7E-20 140.6 9.7 257 82-342 13-275 (280)
27 KOG2076 RNA polymerase III tra 99.6 4.2E-12 9.1E-17 125.1 33.6 328 12-343 141-511 (895)
28 PRK10747 putative protoheme IX 99.6 7.2E-12 1.5E-16 121.0 29.8 274 60-343 98-389 (398)
29 KOG4422 Uncharacterized conser 99.6 2.7E-11 5.8E-16 109.9 30.7 329 11-345 117-552 (625)
30 PRK10747 putative protoheme IX 99.6 3.4E-11 7.4E-16 116.3 34.0 279 23-311 97-391 (398)
31 TIGR00540 hemY_coli hemY prote 99.5 4.7E-11 1E-15 116.0 33.9 275 61-342 99-397 (409)
32 KOG4422 Uncharacterized conser 99.5 1.9E-10 4.1E-15 104.5 32.5 334 8-347 205-593 (625)
33 KOG1126 DNA-binding cell divis 99.5 7.6E-12 1.7E-16 119.6 23.8 274 61-344 334-620 (638)
34 PF13429 TPR_15: Tetratricopep 99.5 7.2E-14 1.6E-18 128.9 9.7 252 50-309 13-276 (280)
35 KOG1155 Anaphase-promoting com 99.5 2.2E-10 4.7E-15 105.2 31.5 254 84-343 234-494 (559)
36 TIGR00540 hemY_coli hemY prote 99.5 7.1E-11 1.5E-15 114.7 29.2 281 22-308 96-397 (409)
37 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.6E-16 118.3 22.2 279 25-314 334-624 (638)
38 KOG2003 TPR repeat-containing 99.5 2.2E-10 4.8E-15 104.7 28.7 172 156-330 533-709 (840)
39 KOG4318 Bicoid mRNA stability 99.4 4.3E-12 9.4E-17 124.4 17.6 268 98-405 11-279 (1088)
40 TIGR02521 type_IV_pilW type IV 99.4 4.9E-11 1.1E-15 106.6 22.9 197 146-343 30-231 (234)
41 KOG0495 HAT repeat protein [RN 99.4 1.7E-09 3.7E-14 103.3 32.7 337 11-358 517-892 (913)
42 KOG1155 Anaphase-promoting com 99.4 3.7E-10 8E-15 103.7 26.9 282 51-341 233-533 (559)
43 KOG0495 HAT repeat protein [RN 99.4 2.5E-09 5.5E-14 102.2 32.4 323 18-353 384-719 (913)
44 COG2956 Predicted N-acetylgluc 99.4 3.7E-10 7.9E-15 99.2 24.6 284 61-351 50-354 (389)
45 KOG4318 Bicoid mRNA stability 99.4 6.9E-11 1.5E-15 116.2 21.4 250 1-264 16-286 (1088)
46 COG3071 HemY Uncharacterized e 99.4 2E-09 4.3E-14 97.4 28.4 274 60-343 98-389 (400)
47 COG3071 HemY Uncharacterized e 99.4 5.5E-09 1.2E-13 94.6 30.8 279 23-310 97-390 (400)
48 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.7E-17 84.3 6.9 50 176-225 1-50 (50)
49 KOG0547 Translocase of outer m 99.4 1.3E-09 2.8E-14 100.8 27.2 213 125-342 339-564 (606)
50 PF13041 PPR_2: PPR repeat fam 99.4 2.4E-12 5.2E-17 84.1 6.7 50 75-124 1-50 (50)
51 KOG1840 Kinesin light chain [C 99.3 3.7E-10 8.1E-15 109.1 23.4 232 112-343 199-478 (508)
52 KOG2002 TPR-containing nuclear 99.3 3.2E-09 7E-14 105.9 29.7 201 141-346 446-677 (1018)
53 PRK12370 invasion protein regu 99.3 1.8E-09 3.9E-14 109.0 29.0 257 76-345 255-536 (553)
54 COG2956 Predicted N-acetylgluc 99.3 2.8E-09 6.2E-14 93.7 25.8 281 23-309 48-346 (389)
55 KOG2002 TPR-containing nuclear 99.3 6E-09 1.3E-13 104.1 28.6 311 44-359 269-608 (1018)
56 KOG1173 Anaphase-promoting com 99.3 3.4E-09 7.4E-14 99.8 25.3 263 76-343 243-517 (611)
57 TIGR02521 type_IV_pilW type IV 99.3 3.1E-09 6.7E-14 94.9 23.9 190 77-271 31-225 (234)
58 KOG2003 TPR repeat-containing 99.2 1E-08 2.2E-13 94.0 25.7 182 159-343 502-688 (840)
59 KOG1915 Cell cycle control pro 99.2 9.2E-08 2E-12 88.5 30.8 315 23-346 154-502 (677)
60 PRK12370 invasion protein regu 99.2 4.5E-09 9.7E-14 106.1 23.7 227 111-344 255-502 (553)
61 KOG1129 TPR repeat-containing 99.2 3.5E-09 7.5E-14 93.2 18.8 224 116-344 227-458 (478)
62 KOG2076 RNA polymerase III tra 99.2 1.3E-07 2.8E-12 94.1 30.7 335 8-345 171-556 (895)
63 KOG1129 TPR repeat-containing 99.1 5.6E-09 1.2E-13 91.9 17.1 229 81-314 227-462 (478)
64 KOG1174 Anaphase-promoting com 99.1 2.4E-07 5.2E-12 84.4 27.4 305 6-317 190-507 (564)
65 KOG1840 Kinesin light chain [C 99.1 2E-08 4.4E-13 97.2 21.8 230 79-308 201-477 (508)
66 PRK11189 lipoprotein NlpI; Pro 99.1 7.9E-08 1.7E-12 89.0 24.2 216 91-314 40-269 (296)
67 KOG0547 Translocase of outer m 99.1 1.5E-07 3.2E-12 87.5 24.9 152 190-344 338-491 (606)
68 PRK11189 lipoprotein NlpI; Pro 99.0 2.9E-08 6.4E-13 91.9 19.8 212 126-345 40-266 (296)
69 COG3063 PilF Tfp pilus assembl 99.0 6.6E-08 1.4E-12 81.5 18.4 163 181-346 38-204 (250)
70 KOG1173 Anaphase-promoting com 99.0 4.1E-07 8.9E-12 86.2 25.4 277 42-322 241-530 (611)
71 PF12569 NARP1: NMDA receptor- 99.0 1.6E-06 3.4E-11 85.2 29.7 282 54-343 13-333 (517)
72 KOG1915 Cell cycle control pro 99.0 4.3E-06 9.4E-11 77.7 30.3 332 5-345 169-537 (677)
73 KOG1174 Anaphase-promoting com 99.0 2.3E-06 5E-11 78.1 27.4 262 75-343 230-499 (564)
74 PF12569 NARP1: NMDA receptor- 98.9 6.9E-07 1.5E-11 87.7 25.6 257 84-346 11-293 (517)
75 cd05804 StaR_like StaR_like; a 98.9 6.6E-06 1.4E-10 78.8 30.2 259 84-345 50-337 (355)
76 PF04733 Coatomer_E: Coatomer 98.9 5.3E-08 1.2E-12 89.0 14.6 242 61-313 16-268 (290)
77 KOG1125 TPR repeat-containing 98.9 5.5E-08 1.2E-12 92.2 14.8 219 122-343 295-526 (579)
78 PF04733 Coatomer_E: Coatomer 98.9 2.5E-07 5.4E-12 84.6 18.4 244 85-343 9-264 (290)
79 KOG1070 rRNA processing protei 98.8 1E-06 2.2E-11 91.5 23.1 199 146-348 1457-1667(1710)
80 COG3063 PilF Tfp pilus assembl 98.8 3.3E-06 7.1E-11 71.4 22.1 188 79-271 37-229 (250)
81 KOG2047 mRNA splicing factor [ 98.8 2.7E-05 5.9E-10 75.2 30.8 155 19-174 111-275 (835)
82 KOG4162 Predicted calmodulin-b 98.8 2E-05 4.3E-10 77.7 29.2 126 218-345 655-784 (799)
83 KOG3785 Uncharacterized conser 98.8 2.4E-05 5.3E-10 70.2 27.0 121 220-345 366-491 (557)
84 cd05804 StaR_like StaR_like; a 98.7 6.4E-05 1.4E-09 72.0 31.7 293 12-310 8-336 (355)
85 KOG4340 Uncharacterized conser 98.7 1.9E-06 4.1E-11 75.4 18.5 315 1-340 1-335 (459)
86 KOG0624 dsRNA-activated protei 98.7 6E-05 1.3E-09 67.5 28.0 289 50-345 43-371 (504)
87 KOG2047 mRNA splicing factor [ 98.7 0.00017 3.7E-09 69.9 32.6 324 11-343 249-686 (835)
88 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.1E-13 58.0 4.2 33 142-174 2-34 (34)
89 PRK04841 transcriptional regul 98.7 3.9E-05 8.5E-10 83.2 30.9 295 50-345 414-761 (903)
90 TIGR03302 OM_YfiO outer membra 98.7 3.1E-06 6.7E-11 75.9 18.4 181 146-344 32-232 (235)
91 KOG0548 Molecular co-chaperone 98.6 3.3E-05 7.2E-10 73.2 25.3 322 18-345 10-456 (539)
92 KOG4162 Predicted calmodulin-b 98.6 0.00041 8.8E-09 68.8 33.6 204 40-244 318-544 (799)
93 PF12854 PPR_1: PPR repeat 98.6 4.5E-08 9.7E-13 57.4 4.2 32 40-72 2-33 (34)
94 KOG0624 dsRNA-activated protei 98.6 0.00021 4.5E-09 64.2 28.0 256 53-317 80-377 (504)
95 KOG1128 Uncharacterized conser 98.6 3.3E-06 7.2E-11 82.5 18.3 227 142-393 393-621 (777)
96 KOG2376 Signal recognition par 98.6 0.00026 5.7E-09 68.0 30.2 313 15-339 17-400 (652)
97 PRK10370 formate-dependent nit 98.6 4.7E-06 1E-10 72.0 17.3 118 226-345 52-174 (198)
98 PRK15359 type III secretion sy 98.6 2.2E-06 4.8E-11 70.0 13.9 121 199-325 14-136 (144)
99 KOG1156 N-terminal acetyltrans 98.6 0.00021 4.6E-09 69.4 28.3 192 20-217 51-256 (700)
100 PRK10370 formate-dependent nit 98.6 8.6E-06 1.9E-10 70.3 17.5 155 154-319 23-182 (198)
101 PLN02789 farnesyltranstransfer 98.5 6.9E-05 1.5E-09 69.6 23.5 217 79-328 39-268 (320)
102 KOG1128 Uncharacterized conser 98.5 2.2E-05 4.7E-10 77.0 20.5 212 116-345 402-617 (777)
103 PRK15359 type III secretion sy 98.5 4E-06 8.7E-11 68.5 13.1 95 251-345 26-122 (144)
104 PRK15179 Vi polysaccharide bio 98.5 2.1E-05 4.6E-10 80.3 20.8 208 114-344 30-245 (694)
105 KOG1070 rRNA processing protei 98.5 7.3E-05 1.6E-09 78.3 24.4 231 109-341 1454-1697(1710)
106 KOG3616 Selective LIM binding 98.5 5.8E-05 1.3E-09 74.0 22.4 164 122-304 742-905 (1636)
107 TIGR03302 OM_YfiO outer membra 98.5 1.9E-05 4.1E-10 70.7 18.3 180 111-312 32-234 (235)
108 KOG2376 Signal recognition par 98.5 0.0012 2.7E-08 63.6 30.5 143 193-341 356-517 (652)
109 PRK14720 transcript cleavage f 98.5 6E-05 1.3E-09 78.0 23.3 233 44-326 30-268 (906)
110 COG5010 TadD Flp pilus assembl 98.4 4.3E-05 9.2E-10 66.2 18.7 152 184-338 72-225 (257)
111 PRK04841 transcriptional regul 98.4 0.00067 1.4E-08 73.7 32.7 331 56-394 385-767 (903)
112 PLN02789 farnesyltranstransfer 98.4 0.00036 7.7E-09 64.9 25.7 209 47-261 39-267 (320)
113 KOG4340 Uncharacterized conser 98.4 0.00011 2.5E-09 64.5 20.6 275 61-343 127-442 (459)
114 KOG0985 Vesicle coat protein c 98.4 0.00043 9.3E-09 70.5 26.7 142 178-340 1104-1245(1666)
115 KOG1125 TPR repeat-containing 98.4 2.6E-05 5.6E-10 74.6 17.5 247 85-335 293-562 (579)
116 KOG3785 Uncharacterized conser 98.4 0.00091 2E-08 60.5 25.9 179 17-206 29-213 (557)
117 KOG0985 Vesicle coat protein c 98.3 0.00045 9.8E-09 70.3 25.7 253 61-341 1090-1367(1666)
118 COG4783 Putative Zn-dependent 98.3 9.9E-05 2.1E-09 69.5 19.8 120 221-342 314-435 (484)
119 TIGR00756 PPR pentatricopeptid 98.3 9E-07 1.9E-11 52.6 4.4 35 78-112 1-35 (35)
120 PRK15363 pathogenicity island 98.3 2E-05 4.4E-10 63.5 12.9 96 248-343 34-131 (157)
121 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 2.9E-11 51.8 4.4 34 179-212 1-34 (35)
122 COG5010 TadD Flp pilus assembl 98.3 4.3E-05 9.3E-10 66.2 15.0 134 210-345 63-198 (257)
123 KOG3081 Vesicle coat complex C 98.3 0.00086 1.9E-08 58.3 22.6 228 76-314 40-275 (299)
124 COG4783 Putative Zn-dependent 98.3 0.00048 1E-08 65.0 22.7 146 179-345 307-455 (484)
125 KOG1156 N-terminal acetyltrans 98.3 0.00092 2E-08 65.1 25.0 260 80-343 11-282 (700)
126 TIGR02552 LcrH_SycD type III s 98.3 1.5E-05 3.4E-10 64.4 11.7 96 249-344 17-114 (135)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.7E-05 5.8E-10 73.8 14.4 122 216-342 172-295 (395)
128 PRK15179 Vi polysaccharide bio 98.2 0.00044 9.6E-09 70.9 23.5 210 77-308 28-243 (694)
129 PF13812 PPR_3: Pentatricopept 98.2 2.2E-06 4.7E-11 50.5 4.3 34 77-110 1-34 (34)
130 KOG3616 Selective LIM binding 98.2 0.0011 2.5E-08 65.3 24.4 192 17-236 739-931 (1636)
131 PRK14720 transcript cleavage f 98.2 0.0022 4.7E-08 66.9 27.0 238 6-292 26-268 (906)
132 TIGR02552 LcrH_SycD type III s 98.2 8.3E-05 1.8E-09 60.1 13.9 113 200-316 5-120 (135)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.8E-05 2.1E-09 70.0 16.0 127 150-279 172-298 (395)
134 KOG3617 WD40 and TPR repeat-co 98.1 0.00069 1.5E-08 67.6 21.7 239 44-308 725-994 (1416)
135 KOG1914 mRNA cleavage and poly 98.1 0.0091 2E-07 57.3 28.1 336 7-347 17-467 (656)
136 KOG3617 WD40 and TPR repeat-co 98.1 0.0013 2.8E-08 65.8 23.2 403 9-465 725-1205(1416)
137 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 48.9 4.5 33 179-211 2-34 (34)
138 KOG1127 TPR repeat-containing 98.1 0.00042 9.1E-09 70.6 19.1 61 280-340 849-909 (1238)
139 KOG3081 Vesicle coat complex C 98.1 0.0009 2E-08 58.2 18.2 243 84-342 15-269 (299)
140 KOG3060 Uncharacterized conser 98.0 0.0021 4.5E-08 55.6 19.6 126 189-317 97-227 (289)
141 PF01535 PPR: PPR repeat; Int 98.0 9.8E-06 2.1E-10 46.5 3.4 31 78-108 1-31 (31)
142 cd00189 TPR Tetratricopeptide 97.9 0.00014 3.1E-09 53.9 10.4 92 252-343 3-96 (100)
143 PF09976 TPR_21: Tetratricopep 97.9 0.0011 2.3E-08 54.3 16.0 114 191-306 24-143 (145)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00055 1.2E-08 56.0 14.1 125 214-340 13-143 (145)
145 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.5E-10 45.5 3.3 29 180-208 2-30 (31)
146 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00034 7.3E-09 54.9 11.7 101 216-316 5-111 (119)
147 PF12895 Apc3: Anaphase-promot 97.8 2.3E-05 5.1E-10 57.4 3.9 77 263-340 3-83 (84)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00037 7.9E-09 54.7 11.1 96 250-345 3-106 (119)
149 KOG0548 Molecular co-chaperone 97.7 0.0053 1.1E-07 58.8 19.0 245 80-338 227-483 (539)
150 PLN03088 SGT1, suppressor of 97.7 0.0006 1.3E-08 64.8 13.0 100 220-321 9-110 (356)
151 PF13414 TPR_11: TPR repeat; P 97.7 0.0001 2.3E-09 51.5 5.9 64 280-343 2-66 (69)
152 KOG3060 Uncharacterized conser 97.7 0.0069 1.5E-07 52.5 17.6 161 181-345 55-221 (289)
153 KOG1127 TPR repeat-containing 97.7 0.0016 3.6E-08 66.5 15.9 179 163-342 474-657 (1238)
154 cd00189 TPR Tetratricopeptide 97.7 0.00072 1.6E-08 49.9 10.5 62 251-312 36-99 (100)
155 PLN03088 SGT1, suppressor of 97.7 0.001 2.2E-08 63.3 13.6 102 184-288 8-110 (356)
156 KOG0550 Molecular chaperone (D 97.6 0.0026 5.7E-08 58.8 15.2 257 82-346 54-352 (486)
157 KOG2053 Mitochondrial inherita 97.6 0.043 9.3E-07 56.0 24.8 118 61-181 24-148 (932)
158 KOG2053 Mitochondrial inherita 97.6 0.062 1.3E-06 54.9 25.8 131 22-159 21-156 (932)
159 PRK02603 photosystem I assembl 97.6 0.0019 4E-08 54.6 13.7 131 177-330 34-166 (172)
160 PF13432 TPR_16: Tetratricopep 97.6 0.00018 3.9E-09 49.6 6.1 57 287-343 3-59 (65)
161 PRK15363 pathogenicity island 97.6 0.0046 9.9E-08 50.1 14.4 102 69-173 26-129 (157)
162 PRK10153 DNA-binding transcrip 97.6 0.0047 1E-07 61.5 17.6 66 250-315 421-487 (517)
163 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.8E-08 58.8 14.2 133 179-314 2-140 (280)
164 PRK02603 photosystem I assembl 97.6 0.0011 2.4E-08 56.0 11.4 81 250-330 36-121 (172)
165 KOG0553 TPR repeat-containing 97.5 0.001 2.2E-08 59.1 10.6 99 223-323 91-191 (304)
166 PF08579 RPM2: Mitochondrial r 97.5 0.0014 3.1E-08 49.2 9.8 80 181-261 28-116 (120)
167 CHL00033 ycf3 photosystem I as 97.5 0.0013 2.8E-08 55.4 11.1 94 248-341 34-139 (168)
168 PF04840 Vps16_C: Vps16, C-ter 97.5 0.08 1.7E-06 49.2 24.2 103 184-304 183-285 (319)
169 PF04840 Vps16_C: Vps16, C-ter 97.5 0.084 1.8E-06 49.1 25.8 111 214-341 178-288 (319)
170 PF05843 Suf: Suppressor of fo 97.5 0.0039 8.4E-08 57.2 14.5 128 78-207 2-136 (280)
171 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.5E-08 55.3 10.5 97 167-264 34-153 (228)
172 PF10037 MRP-S27: Mitochondria 97.4 0.0036 7.8E-08 59.9 13.9 121 208-328 61-186 (429)
173 PF13432 TPR_16: Tetratricopep 97.4 0.00041 8.8E-09 47.8 5.8 61 255-315 3-65 (65)
174 KOG0553 TPR repeat-containing 97.4 0.00059 1.3E-08 60.5 7.5 87 257-343 89-177 (304)
175 PF12895 Apc3: Anaphase-promot 97.4 0.00061 1.3E-08 49.8 6.6 81 191-274 2-83 (84)
176 PF14938 SNAP: Soluble NSF att 97.4 0.015 3.2E-07 53.5 17.2 175 61-275 30-222 (282)
177 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.6E-08 47.2 10.2 81 79-159 27-116 (120)
178 PF10037 MRP-S27: Mitochondria 97.4 0.0025 5.5E-08 60.9 12.0 120 40-160 61-186 (429)
179 KOG1914 mRNA cleavage and poly 97.4 0.029 6.4E-07 54.0 18.6 172 93-266 347-527 (656)
180 PF14559 TPR_19: Tetratricopep 97.4 0.00023 5E-09 49.6 3.8 52 292-343 2-53 (68)
181 KOG2796 Uncharacterized conser 97.3 0.018 4E-07 50.2 15.6 136 80-217 180-323 (366)
182 PF12688 TPR_5: Tetratrico pep 97.3 0.0084 1.8E-07 46.7 12.5 107 82-188 6-116 (120)
183 COG4235 Cytochrome c biogenesi 97.3 0.0077 1.7E-07 53.9 13.3 101 245-345 152-257 (287)
184 PF13371 TPR_9: Tetratricopept 97.3 0.00098 2.1E-08 47.1 6.3 57 289-345 3-59 (73)
185 KOG1130 Predicted G-alpha GTPa 97.3 0.0021 4.6E-08 59.3 9.7 258 85-343 25-343 (639)
186 PF14938 SNAP: Soluble NSF att 97.2 0.033 7.2E-07 51.2 17.6 100 215-314 116-229 (282)
187 PRK10866 outer membrane biogen 97.2 0.058 1.3E-06 48.3 18.2 173 153-342 38-239 (243)
188 CHL00033 ycf3 photosystem I as 97.2 0.011 2.4E-07 49.7 12.9 81 77-158 35-117 (168)
189 PF13281 DUF4071: Domain of un 97.2 0.069 1.5E-06 50.2 18.6 161 151-314 145-338 (374)
190 PF06239 ECSIT: Evolutionarily 97.1 0.0051 1.1E-07 52.3 9.9 97 66-162 34-153 (228)
191 KOG1538 Uncharacterized conser 97.1 0.076 1.7E-06 52.3 18.8 194 93-308 616-844 (1081)
192 PF13414 TPR_11: TPR repeat; P 97.1 0.00096 2.1E-08 46.5 4.8 65 248-312 2-69 (69)
193 PRK15331 chaperone protein Sic 97.1 0.0043 9.2E-08 50.5 9.0 89 255-343 43-133 (165)
194 PF14559 TPR_19: Tetratricopep 97.1 0.00074 1.6E-08 46.9 4.1 53 262-314 4-58 (68)
195 PRK10153 DNA-binding transcrip 97.1 0.025 5.5E-07 56.4 16.3 134 208-345 332-483 (517)
196 KOG2280 Vacuolar assembly/sort 97.1 0.41 8.8E-06 48.3 25.0 321 2-339 424-794 (829)
197 PRK10803 tol-pal system protei 97.0 0.0063 1.4E-07 54.9 10.2 94 250-343 144-245 (263)
198 COG4700 Uncharacterized protei 97.0 0.15 3.2E-06 42.4 16.7 132 209-343 85-221 (251)
199 COG3898 Uncharacterized membra 97.0 0.31 6.7E-06 45.3 29.0 282 48-343 85-391 (531)
200 PF12688 TPR_5: Tetratrico pep 97.0 0.015 3.3E-07 45.3 10.7 82 258-339 10-99 (120)
201 PF13512 TPR_18: Tetratricopep 96.9 0.029 6.2E-07 44.7 11.9 115 256-396 17-137 (142)
202 COG4700 Uncharacterized protei 96.9 0.19 4.2E-06 41.7 16.6 56 117-172 94-149 (251)
203 PF03704 BTAD: Bacterial trans 96.9 0.021 4.5E-07 46.7 11.6 62 282-343 63-124 (146)
204 KOG2041 WD40 repeat protein [G 96.8 0.16 3.4E-06 50.7 18.4 131 62-203 679-821 (1189)
205 PRK10866 outer membrane biogen 96.8 0.38 8.2E-06 43.0 20.7 65 76-142 31-99 (243)
206 PF13431 TPR_17: Tetratricopep 96.7 0.00098 2.1E-08 38.8 1.9 32 304-335 2-33 (34)
207 PF13371 TPR_9: Tetratricopept 96.7 0.0062 1.3E-07 42.9 6.5 62 257-318 3-66 (73)
208 KOG1538 Uncharacterized conser 96.7 0.23 5.1E-06 49.0 18.4 217 13-275 601-843 (1081)
209 PF13428 TPR_14: Tetratricopep 96.7 0.003 6.6E-08 39.4 4.0 42 282-323 2-43 (44)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.01 2.2E-07 56.5 8.7 97 248-347 74-177 (453)
211 PRK10803 tol-pal system protei 96.6 0.049 1.1E-06 49.2 12.9 101 215-315 145-251 (263)
212 PF12921 ATP13: Mitochondrial 96.6 0.037 8E-07 43.6 10.1 51 209-259 48-98 (126)
213 COG4235 Cytochrome c biogenesi 96.5 0.19 4E-06 45.3 15.0 103 210-314 153-260 (287)
214 PF13525 YfiO: Outer membrane 96.5 0.52 1.1E-05 40.9 20.1 181 79-268 7-197 (203)
215 KOG2796 Uncharacterized conser 96.5 0.39 8.4E-06 42.3 16.3 232 76-314 68-319 (366)
216 COG3898 Uncharacterized membra 96.4 0.8 1.7E-05 42.7 22.6 208 61-275 169-389 (531)
217 PF09205 DUF1955: Domain of un 96.4 0.13 2.8E-06 40.1 11.7 140 189-347 13-152 (161)
218 PF13525 YfiO: Outer membrane 96.3 0.54 1.2E-05 40.8 17.3 49 287-335 147-198 (203)
219 PF12921 ATP13: Mitochondrial 96.3 0.062 1.3E-06 42.3 9.9 96 212-325 1-98 (126)
220 PF13424 TPR_12: Tetratricopep 96.2 0.01 2.3E-07 42.4 4.9 24 317-340 48-71 (78)
221 KOG0543 FKBP-type peptidyl-pro 96.1 0.063 1.4E-06 50.1 10.5 64 281-344 257-320 (397)
222 KOG3941 Intermediate in Toll s 96.1 0.058 1.3E-06 47.7 9.6 110 165-275 52-185 (406)
223 KOG1920 IkappaB kinase complex 96.0 2.1 4.5E-05 45.9 21.8 25 81-105 794-820 (1265)
224 PF03704 BTAD: Bacterial trans 96.0 0.088 1.9E-06 42.9 10.3 70 181-251 65-138 (146)
225 PF13424 TPR_12: Tetratricopep 96.0 0.011 2.4E-07 42.2 4.3 60 249-308 5-73 (78)
226 KOG2280 Vacuolar assembly/sort 96.0 2.2 4.8E-05 43.3 21.6 243 45-306 507-795 (829)
227 smart00299 CLH Clathrin heavy 95.9 0.65 1.4E-05 37.4 14.7 88 11-103 8-95 (140)
228 KOG1585 Protein required for f 95.8 1.2 2.7E-05 38.8 16.7 85 253-338 154-250 (308)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.079 1.7E-06 50.6 9.5 63 210-275 72-138 (453)
230 COG3118 Thioredoxin domain-con 95.6 1.6 3.5E-05 39.4 16.8 168 165-334 121-291 (304)
231 KOG1130 Predicted G-alpha GTPa 95.6 0.086 1.9E-06 49.1 9.1 126 115-240 198-342 (639)
232 smart00299 CLH Clathrin heavy 95.6 0.95 2.1E-05 36.5 14.7 42 117-159 12-53 (140)
233 PF13281 DUF4071: Domain of un 95.5 2.3 4.9E-05 40.3 18.8 31 211-241 303-333 (374)
234 COG1729 Uncharacterized protei 95.5 0.12 2.6E-06 45.8 9.4 89 252-343 145-243 (262)
235 PF07079 DUF1347: Protein of u 95.4 2.7 5.8E-05 40.2 27.7 316 15-342 133-522 (549)
236 COG0457 NrfG FOG: TPR repeat [ 95.4 1.7 3.6E-05 37.7 27.3 194 148-343 60-264 (291)
237 PRK15331 chaperone protein Sic 95.3 0.3 6.6E-06 40.0 10.5 93 81-175 41-133 (165)
238 KOG0543 FKBP-type peptidyl-pro 95.2 0.31 6.6E-06 45.7 11.4 94 250-343 258-354 (397)
239 KOG4555 TPR repeat-containing 95.2 0.23 5E-06 38.6 8.7 89 258-346 52-146 (175)
240 KOG3941 Intermediate in Toll s 95.2 0.18 4E-06 44.7 9.3 110 64-173 52-185 (406)
241 PF04053 Coatomer_WDAD: Coatom 95.2 0.55 1.2E-05 45.9 13.7 132 188-345 271-403 (443)
242 PF04053 Coatomer_WDAD: Coatom 95.1 0.68 1.5E-05 45.3 14.2 154 21-202 272-426 (443)
243 KOG2610 Uncharacterized conser 95.1 0.88 1.9E-05 41.6 13.5 113 160-275 116-235 (491)
244 COG5107 RNA14 Pre-mRNA 3'-end 94.8 1.1 2.3E-05 42.7 13.7 144 112-260 397-546 (660)
245 PF10300 DUF3808: Protein of u 94.8 4.6 0.0001 40.1 19.2 113 24-139 247-374 (468)
246 KOG1941 Acetylcholine receptor 94.8 0.47 1E-05 43.7 11.0 121 219-339 128-270 (518)
247 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4.2 9E-05 39.0 24.2 127 214-342 398-529 (660)
248 PF10300 DUF3808: Protein of u 94.7 2.7 5.8E-05 41.8 17.2 161 181-344 191-376 (468)
249 COG0457 NrfG FOG: TPR repeat [ 94.6 2.8 6E-05 36.2 25.7 199 113-313 60-268 (291)
250 KOG1258 mRNA processing protei 94.6 5.5 0.00012 39.6 29.4 304 22-329 91-489 (577)
251 KOG2041 WD40 repeat protein [G 94.4 6.4 0.00014 39.9 23.3 55 143-202 848-902 (1189)
252 PF08631 SPO22: Meiosis protei 94.2 4.3 9.4E-05 37.2 24.2 26 149-174 123-148 (278)
253 PF00515 TPR_1: Tetratricopept 94.2 0.087 1.9E-06 30.4 3.6 32 282-313 2-33 (34)
254 PF07719 TPR_2: Tetratricopept 94.0 0.15 3.2E-06 29.3 4.3 33 282-314 2-34 (34)
255 KOG0550 Molecular chaperone (D 93.9 6 0.00013 37.5 17.3 116 122-240 179-314 (486)
256 KOG4555 TPR repeat-containing 93.7 0.61 1.3E-05 36.3 8.1 88 223-313 53-147 (175)
257 PF02259 FAT: FAT domain; Int 93.5 6.9 0.00015 37.1 19.2 150 176-328 144-305 (352)
258 PF07079 DUF1347: Protein of u 93.5 7.6 0.00016 37.4 23.9 274 21-314 17-331 (549)
259 PF13170 DUF4003: Protein of u 93.4 2.4 5.1E-05 39.1 13.0 130 26-157 78-227 (297)
260 COG1729 Uncharacterized protei 93.3 2.2 4.7E-05 38.1 12.1 63 253-315 182-249 (262)
261 PF13512 TPR_18: Tetratricopep 93.3 2.4 5.3E-05 33.9 11.3 114 185-315 17-133 (142)
262 COG4105 ComL DNA uptake lipopr 93.2 5.8 0.00013 35.2 20.6 57 287-343 173-232 (254)
263 KOG2114 Vacuolar assembly/sort 93.2 12 0.00026 38.8 20.6 181 11-201 284-486 (933)
264 PF04184 ST7: ST7 protein; In 93.2 3 6.5E-05 40.5 13.5 62 285-346 263-326 (539)
265 COG4649 Uncharacterized protei 93.1 1.3 2.8E-05 36.5 9.6 135 76-211 58-200 (221)
266 PRK11906 transcriptional regul 93.0 6.7 0.00015 38.0 15.6 157 179-338 252-430 (458)
267 KOG0890 Protein kinase of the 92.8 24 0.00052 41.3 23.4 311 15-346 1388-1733(2382)
268 PRK11619 lytic murein transgly 92.7 14 0.00031 38.3 27.6 77 265-341 295-372 (644)
269 COG4105 ComL DNA uptake lipopr 92.6 7.1 0.00015 34.6 17.5 61 255-315 173-238 (254)
270 COG3629 DnrI DNA-binding trans 92.6 0.67 1.4E-05 41.9 8.0 63 281-343 153-215 (280)
271 KOG1941 Acetylcholine receptor 92.5 5.2 0.00011 37.2 13.4 125 184-308 128-273 (518)
272 KOG2610 Uncharacterized conser 92.3 1.8 3.9E-05 39.7 10.3 159 190-351 115-283 (491)
273 PRK11906 transcriptional regul 92.3 2.8 6.1E-05 40.5 12.2 116 228-343 273-400 (458)
274 COG3947 Response regulator con 92.3 8.4 0.00018 34.8 15.2 59 285-343 283-341 (361)
275 KOG4234 TPR repeat-containing 92.3 0.59 1.3E-05 39.4 6.7 88 258-345 104-198 (271)
276 PRK09687 putative lyase; Provi 92.1 9.6 0.00021 34.9 27.3 79 42-123 34-116 (280)
277 PF10602 RPN7: 26S proteasome 92.0 3.1 6.8E-05 35.1 11.1 58 149-206 38-101 (177)
278 PF02259 FAT: FAT domain; Int 91.9 11 0.00025 35.6 17.0 68 279-346 144-215 (352)
279 PF13176 TPR_7: Tetratricopept 91.9 0.39 8.5E-06 28.1 4.0 26 79-104 1-26 (36)
280 PF09205 DUF1955: Domain of un 91.8 5.3 0.00012 31.4 12.9 135 158-311 13-150 (161)
281 KOG2114 Vacuolar assembly/sort 91.7 11 0.00023 39.2 15.8 179 114-307 336-516 (933)
282 COG3629 DnrI DNA-binding trans 91.7 1.6 3.4E-05 39.5 9.3 74 149-222 155-236 (280)
283 PF13170 DUF4003: Protein of u 91.2 12 0.00027 34.5 15.3 48 94-141 79-132 (297)
284 KOG1585 Protein required for f 90.9 3.8 8.3E-05 35.9 10.4 114 215-340 93-215 (308)
285 PF10602 RPN7: 26S proteasome 90.9 6.4 0.00014 33.2 11.9 97 179-275 37-139 (177)
286 PF13428 TPR_14: Tetratricopep 90.8 1 2.2E-05 27.8 5.3 29 78-106 2-30 (44)
287 PF13176 TPR_7: Tetratricopept 90.7 0.4 8.7E-06 28.1 3.2 24 284-307 2-25 (36)
288 PF09613 HrpB1_HrpK: Bacterial 90.7 4 8.6E-05 33.4 9.8 17 259-275 54-70 (160)
289 KOG4570 Uncharacterized conser 90.6 2.4 5.1E-05 38.5 9.2 99 39-142 58-165 (418)
290 COG3118 Thioredoxin domain-con 90.5 13 0.00029 33.7 18.6 141 119-263 141-286 (304)
291 PF13181 TPR_8: Tetratricopept 90.4 0.44 9.6E-06 27.2 3.3 31 283-313 3-33 (34)
292 KOG1464 COP9 signalosome, subu 90.4 13 0.00027 33.3 16.1 259 40-306 21-328 (440)
293 TIGR02508 type_III_yscG type I 89.5 5.6 0.00012 29.5 8.7 88 127-218 20-107 (115)
294 COG1747 Uncharacterized N-term 89.3 23 0.0005 34.8 18.1 179 48-241 45-233 (711)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 89.3 2.6 5.7E-05 31.0 6.9 63 193-257 22-84 (103)
296 PF09613 HrpB1_HrpK: Bacterial 89.1 2.1 4.4E-05 35.1 7.1 78 251-330 9-93 (160)
297 TIGR02561 HrpB1_HrpK type III 88.7 2.1 4.6E-05 34.4 6.7 51 294-344 23-73 (153)
298 TIGR02561 HrpB1_HrpK type III 88.6 6.8 0.00015 31.6 9.4 17 259-275 54-70 (153)
299 PF00515 TPR_1: Tetratricopept 88.5 1.1 2.4E-05 25.6 4.0 28 78-105 2-29 (34)
300 KOG4570 Uncharacterized conser 88.3 5.3 0.00012 36.4 9.6 98 141-242 58-164 (418)
301 KOG0403 Neoplastic transformat 88.3 25 0.00055 33.9 16.6 63 284-346 512-574 (645)
302 PF02284 COX5A: Cytochrome c o 88.0 2.6 5.6E-05 31.3 6.3 60 196-257 28-87 (108)
303 COG4785 NlpI Lipoprotein NlpI, 88.0 17 0.00037 31.5 14.4 160 179-345 100-267 (297)
304 PF00637 Clathrin: Region in C 87.5 0.49 1.1E-05 38.3 2.7 53 185-237 14-66 (143)
305 PF14853 Fis1_TPR_C: Fis1 C-te 87.0 4.5 9.8E-05 26.2 6.4 50 318-393 4-53 (53)
306 KOG3364 Membrane protein invol 87.0 4.7 0.0001 31.8 7.5 65 280-344 31-100 (149)
307 KOG0276 Vesicle coat complex C 86.9 12 0.00027 37.3 11.9 107 155-279 645-751 (794)
308 KOG1920 IkappaB kinase complex 86.8 53 0.0011 35.9 21.0 55 219-275 971-1025(1265)
309 PF04184 ST7: ST7 protein; In 86.7 34 0.00074 33.6 18.1 97 218-314 264-379 (539)
310 PF08631 SPO22: Meiosis protei 85.8 28 0.00061 31.9 24.3 18 88-105 4-21 (278)
311 PF07035 Mic1: Colon cancer-as 85.8 19 0.00041 29.9 16.2 137 198-347 14-152 (167)
312 PF00637 Clathrin: Region in C 85.8 0.5 1.1E-05 38.3 1.9 85 15-103 12-96 (143)
313 PF07719 TPR_2: Tetratricopept 85.7 1.9 4.2E-05 24.4 4.0 28 78-105 2-29 (34)
314 PRK15180 Vi polysaccharide bio 85.6 5.1 0.00011 38.7 8.5 121 190-314 301-424 (831)
315 PF13929 mRNA_stabil: mRNA sta 85.6 24 0.00052 32.1 12.3 136 194-329 144-292 (292)
316 PF13374 TPR_10: Tetratricopep 85.6 2 4.3E-05 25.7 4.2 28 78-105 3-30 (42)
317 KOG2066 Vacuolar assembly/sort 85.6 49 0.0011 34.4 22.3 147 22-178 368-536 (846)
318 PF13174 TPR_6: Tetratricopept 85.3 1.6 3.4E-05 24.5 3.4 27 287-313 6-32 (33)
319 KOG1586 Protein required for f 85.2 25 0.00055 30.8 14.2 21 291-311 164-184 (288)
320 PRK15180 Vi polysaccharide bio 84.7 9.4 0.0002 37.0 9.7 126 224-351 300-427 (831)
321 PF11207 DUF2989: Protein of u 84.5 6.9 0.00015 33.4 8.0 74 123-198 118-198 (203)
322 KOG4648 Uncharacterized conser 84.2 2.2 4.8E-05 39.2 5.3 108 221-335 105-215 (536)
323 PF02284 COX5A: Cytochrome c o 84.1 6.8 0.00015 29.2 6.8 48 275-322 39-86 (108)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 7.2 0.00016 28.8 6.8 48 275-322 36-83 (103)
325 PF13431 TPR_17: Tetratricopep 84.0 2 4.4E-05 24.7 3.4 23 42-65 10-32 (34)
326 PF07721 TPR_4: Tetratricopept 83.2 1.7 3.6E-05 23.2 2.6 23 317-339 3-25 (26)
327 KOG1586 Protein required for f 82.6 33 0.00072 30.1 13.2 91 227-317 128-231 (288)
328 PF07721 TPR_4: Tetratricopept 82.4 2.9 6.3E-05 22.3 3.4 21 151-171 5-25 (26)
329 smart00028 TPR Tetratricopepti 82.4 2.8 6.1E-05 22.5 3.7 30 283-312 3-32 (34)
330 COG4785 NlpI Lipoprotein NlpI, 81.9 34 0.00073 29.7 15.5 171 61-242 87-266 (297)
331 PRK09687 putative lyase; Provi 81.8 42 0.00091 30.8 29.9 241 50-313 15-266 (280)
332 PF13374 TPR_10: Tetratricopep 81.5 4.1 9E-05 24.2 4.4 26 283-308 4-29 (42)
333 PF09477 Type_III_YscG: Bacter 81.5 18 0.00038 27.4 8.1 87 126-216 20-106 (116)
334 KOG0276 Vesicle coat complex C 80.9 24 0.00051 35.5 11.1 29 76-104 665-693 (794)
335 KOG1258 mRNA processing protei 80.9 65 0.0014 32.4 23.1 128 12-141 47-180 (577)
336 COG4455 ImpE Protein of avirul 80.2 8.6 0.00019 33.2 7.0 64 252-315 4-69 (273)
337 PF11207 DUF2989: Protein of u 80.1 18 0.0004 30.9 9.0 42 191-232 153-197 (203)
338 COG2976 Uncharacterized protei 79.5 38 0.00083 28.9 14.2 114 196-313 70-191 (207)
339 KOG1464 COP9 signalosome, subu 78.5 45 0.00097 30.0 11.0 175 161-336 41-252 (440)
340 PF13174 TPR_6: Tetratricopept 78.2 3.4 7.3E-05 23.1 3.0 28 317-344 2-29 (33)
341 PF13762 MNE1: Mitochondrial s 78.0 35 0.00076 27.6 10.0 89 36-125 28-128 (145)
342 PRK10941 hypothetical protein; 78.0 13 0.00028 33.8 8.0 62 283-344 183-244 (269)
343 KOG4648 Uncharacterized conser 77.0 10 0.00022 35.1 6.9 93 185-281 104-198 (536)
344 COG2909 MalT ATP-dependent tra 76.8 1.1E+02 0.0023 32.6 20.3 264 85-355 355-658 (894)
345 TIGR02508 type_III_yscG type I 76.7 29 0.00063 25.9 9.7 87 25-116 20-106 (115)
346 PF14853 Fis1_TPR_C: Fis1 C-te 76.3 4.1 8.8E-05 26.4 3.2 32 286-317 6-37 (53)
347 PF13181 TPR_8: Tetratricopept 75.7 7.7 0.00017 21.8 4.1 27 79-105 3-29 (34)
348 KOG1550 Extracellular protein 75.7 1E+02 0.0022 31.6 16.6 180 163-348 228-430 (552)
349 KOG1550 Extracellular protein 73.3 1.1E+02 0.0025 31.2 19.9 115 26-143 228-359 (552)
350 TIGR03504 FimV_Cterm FimV C-te 73.1 6.1 0.00013 24.4 3.3 27 319-345 3-29 (44)
351 COG4455 ImpE Protein of avirul 72.6 22 0.00049 30.8 7.5 78 180-258 3-81 (273)
352 PF10579 Rapsyn_N: Rapsyn N-te 72.6 11 0.00024 26.6 4.8 46 225-270 18-64 (80)
353 KOG2396 HAT (Half-A-TPR) repea 72.1 1.1E+02 0.0023 30.4 18.8 239 61-313 297-563 (568)
354 PF07035 Mic1: Colon cancer-as 71.9 57 0.0012 27.1 15.9 20 184-203 95-114 (167)
355 PF07163 Pex26: Pex26 protein; 71.7 58 0.0013 29.5 10.1 85 84-170 90-181 (309)
356 PF04097 Nic96: Nup93/Nic96; 71.4 39 0.00084 35.0 10.6 85 85-174 266-354 (613)
357 PRK12798 chemotaxis protein; R 71.2 1E+02 0.0022 29.8 20.8 180 160-342 125-322 (421)
358 KOG4077 Cytochrome c oxidase, 70.9 27 0.00059 27.3 6.9 71 196-277 67-137 (149)
359 PF13934 ELYS: Nuclear pore co 70.1 78 0.0017 27.9 12.6 106 181-295 79-186 (226)
360 KOG4234 TPR repeat-containing 69.7 34 0.00073 29.3 7.8 89 84-174 102-195 (271)
361 TIGR03504 FimV_Cterm FimV C-te 68.9 13 0.00028 23.0 4.0 22 185-206 6-27 (44)
362 KOG4507 Uncharacterized conser 68.3 18 0.00039 36.1 6.8 96 226-324 620-719 (886)
363 PF09670 Cas_Cas02710: CRISPR- 67.5 1.2E+02 0.0026 29.3 12.3 54 187-241 140-197 (379)
364 KOG0545 Aryl-hydrocarbon recep 67.3 48 0.001 29.4 8.5 58 286-343 235-292 (329)
365 cd08819 CARD_MDA5_2 Caspase ac 66.8 43 0.00094 24.3 6.8 39 159-198 48-86 (88)
366 PF06552 TOM20_plant: Plant sp 66.2 28 0.00061 29.2 6.7 45 297-348 96-140 (186)
367 PF04910 Tcf25: Transcriptiona 66.1 1.3E+02 0.0027 28.9 15.1 64 280-343 99-167 (360)
368 PF07163 Pex26: Pex26 protein; 65.9 86 0.0019 28.5 9.9 87 185-274 90-183 (309)
369 KOG1308 Hsp70-interacting prot 65.5 4.7 0.0001 37.2 2.2 85 263-347 128-214 (377)
370 PF11846 DUF3366: Domain of un 65.3 28 0.00061 29.7 7.1 35 278-312 141-175 (193)
371 PF11768 DUF3312: Protein of u 65.2 1.3E+02 0.0029 30.1 12.0 56 151-206 412-472 (545)
372 COG1747 Uncharacterized N-term 64.8 1.5E+02 0.0034 29.4 23.5 162 146-314 65-238 (711)
373 smart00386 HAT HAT (Half-A-TPR 64.5 12 0.00027 20.4 3.3 29 295-323 1-29 (33)
374 PF09477 Type_III_YscG: Bacter 64.1 61 0.0013 24.6 9.3 87 24-115 20-106 (116)
375 COG2976 Uncharacterized protei 63.9 94 0.002 26.6 14.9 128 79-208 56-189 (207)
376 KOG0292 Vesicle coat complex C 63.6 9.4 0.0002 39.8 4.2 97 191-311 606-702 (1202)
377 KOG2063 Vacuolar assembly/sort 63.5 2.2E+02 0.0048 30.8 14.6 38 122-159 601-638 (877)
378 PHA02875 ankyrin repeat protei 63.4 1.5E+02 0.0033 28.8 12.7 195 19-232 8-218 (413)
379 COG4649 Uncharacterized protei 63.0 91 0.002 26.2 15.3 121 188-309 68-195 (221)
380 PF10345 Cohesin_load: Cohesin 62.9 2E+02 0.0042 30.0 25.2 48 292-339 372-428 (608)
381 KOG4279 Serine/threonine prote 62.5 1E+02 0.0022 32.2 10.8 183 78-314 202-399 (1226)
382 PF11846 DUF3366: Domain of un 62.4 33 0.00071 29.3 7.0 56 220-275 115-170 (193)
383 cd08819 CARD_MDA5_2 Caspase ac 62.0 59 0.0013 23.6 6.9 66 29-97 21-86 (88)
384 PF10579 Rapsyn_N: Rapsyn N-te 61.8 20 0.00043 25.4 4.3 45 293-337 18-65 (80)
385 KOG4077 Cytochrome c oxidase, 61.8 47 0.001 26.0 6.6 50 272-321 75-124 (149)
386 PRK11619 lytic murein transgly 61.8 2.1E+02 0.0046 29.9 30.9 186 163-349 295-510 (644)
387 PF10366 Vps39_1: Vacuolar sor 61.1 62 0.0014 24.6 7.4 27 180-206 41-67 (108)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 60.6 51 0.0011 25.9 7.1 42 299-340 81-124 (126)
389 KOG0376 Serine-threonine phosp 60.4 17 0.00038 35.2 5.1 85 258-342 13-99 (476)
390 KOG0508 Ankyrin repeat protein 59.6 47 0.001 32.3 7.7 172 17-205 88-273 (615)
391 PF14561 TPR_20: Tetratricopep 58.7 21 0.00045 26.1 4.3 42 303-344 10-51 (90)
392 KOG2422 Uncharacterized conser 57.7 2.2E+02 0.0048 28.9 12.3 120 224-343 249-406 (665)
393 KOG4642 Chaperone-dependent E3 57.6 30 0.00066 30.5 5.6 84 223-309 20-106 (284)
394 COG5159 RPN6 26S proteasome re 57.2 1.5E+02 0.0033 27.1 9.9 124 83-206 9-153 (421)
395 COG3947 Response regulator con 56.9 1.6E+02 0.0035 27.0 15.5 55 253-307 283-339 (361)
396 TIGR01503 MthylAspMut_E methyl 55.7 1.2E+02 0.0025 29.8 9.6 278 62-388 12-315 (480)
397 PF09986 DUF2225: Uncharacteri 55.1 80 0.0017 27.6 8.1 63 283-345 120-195 (214)
398 PF14863 Alkyl_sulf_dimr: Alky 55.0 65 0.0014 26.0 6.9 64 265-331 57-120 (141)
399 PF11663 Toxin_YhaV: Toxin wit 54.1 15 0.00033 29.0 3.0 33 189-223 106-138 (140)
400 PRK13800 putative oxidoreducta 54.0 3.4E+02 0.0073 29.9 25.8 20 247-266 787-806 (897)
401 KOG2066 Vacuolar assembly/sort 53.9 2E+02 0.0042 30.3 11.3 100 154-261 363-467 (846)
402 PRK10564 maltose regulon perip 53.5 29 0.00063 31.7 5.1 41 180-220 259-299 (303)
403 PF04097 Nic96: Nup93/Nic96; 53.4 2.8E+02 0.0061 28.8 15.4 62 43-106 110-181 (613)
404 PF04190 DUF410: Protein of un 53.4 1.7E+02 0.0038 26.4 17.6 155 61-241 5-169 (260)
405 PF11848 DUF3368: Domain of un 53.4 55 0.0012 20.6 5.3 34 188-221 12-45 (48)
406 PF08967 DUF1884: Domain of un 52.6 17 0.00038 25.6 2.8 29 372-400 5-33 (85)
407 PRK10564 maltose regulon perip 51.3 31 0.00066 31.6 4.9 38 79-116 259-296 (303)
408 PF12862 Apc5: Anaphase-promot 50.7 54 0.0012 24.1 5.5 53 291-343 8-69 (94)
409 PF06552 TOM20_plant: Plant sp 50.5 59 0.0013 27.4 6.1 45 297-341 51-99 (186)
410 PRK10941 hypothetical protein; 50.5 1.5E+02 0.0032 27.0 9.2 64 254-317 186-251 (269)
411 KOG4567 GTPase-activating prot 50.4 2.1E+02 0.0046 26.5 10.5 73 198-276 263-345 (370)
412 PRK13342 recombination factor 50.3 2.5E+02 0.0055 27.4 14.9 23 192-214 244-266 (413)
413 PF04190 DUF410: Protein of un 49.5 2E+02 0.0044 26.0 16.2 159 159-344 2-170 (260)
414 PF11663 Toxin_YhaV: Toxin wit 49.3 22 0.00048 28.1 3.2 34 87-122 105-138 (140)
415 PHA02875 ankyrin repeat protei 49.1 2.1E+02 0.0045 27.8 11.0 200 86-305 8-223 (413)
416 COG5108 RPO41 Mitochondrial DN 49.1 1.2E+02 0.0025 31.2 8.7 24 183-206 33-56 (1117)
417 KOG0551 Hsp90 co-chaperone CNS 48.7 1.1E+02 0.0024 28.6 7.9 90 252-341 84-179 (390)
418 PF10255 Paf67: RNA polymerase 48.1 88 0.0019 30.3 7.7 59 217-275 126-190 (404)
419 KOG2297 Predicted translation 47.6 2.3E+02 0.0051 26.2 12.8 44 76-121 110-155 (412)
420 PF14669 Asp_Glu_race_2: Putat 47.4 1.8E+02 0.0039 24.9 14.3 56 117-172 137-206 (233)
421 PF13762 MNE1: Mitochondrial s 46.7 1.6E+02 0.0034 23.9 8.9 49 213-262 79-128 (145)
422 PF06957 COPI_C: Coatomer (COP 45.4 92 0.002 30.3 7.4 43 272-314 289-333 (422)
423 KOG4521 Nuclear pore complex, 45.4 4.8E+02 0.01 29.2 14.5 20 155-174 928-947 (1480)
424 KOG3364 Membrane protein invol 45.3 1.5E+02 0.0033 23.7 7.2 71 246-316 29-106 (149)
425 KOG1498 26S proteasome regulat 45.2 2.9E+02 0.0063 26.6 14.8 102 253-358 135-255 (439)
426 PF12862 Apc5: Anaphase-promot 45.0 1.1E+02 0.0023 22.5 6.3 25 286-310 46-70 (94)
427 KOG4507 Uncharacterized conser 44.9 1E+02 0.0022 31.2 7.5 133 210-345 568-706 (886)
428 cd08326 CARD_CASP9 Caspase act 44.5 1.2E+02 0.0025 21.9 6.2 63 29-96 18-80 (84)
429 PF11838 ERAP1_C: ERAP1-like C 44.4 2.6E+02 0.0057 25.9 17.9 83 229-311 146-231 (324)
430 PF11848 DUF3368: Domain of un 44.0 80 0.0017 19.8 5.2 32 88-119 13-44 (48)
431 PF14689 SPOB_a: Sensor_kinase 44.0 40 0.00086 22.6 3.5 28 179-206 24-51 (62)
432 PRK13342 recombination factor 43.2 3.3E+02 0.0071 26.6 15.6 35 80-114 230-267 (413)
433 KOG2063 Vacuolar assembly/sort 43.0 4.7E+02 0.01 28.4 15.8 129 79-225 506-638 (877)
434 KOG0686 COP9 signalosome, subu 42.7 3.2E+02 0.007 26.4 14.3 91 148-240 151-256 (466)
435 KOG0687 26S proteasome regulat 42.6 2.9E+02 0.0063 25.9 12.5 94 214-309 105-209 (393)
436 KOG4642 Chaperone-dependent E3 42.3 2.5E+02 0.0055 25.0 9.4 78 160-239 23-104 (284)
437 smart00638 LPD_N Lipoprotein N 41.9 4.1E+02 0.0088 27.3 25.1 103 43-149 308-413 (574)
438 KOG0292 Vesicle coat complex C 41.8 4.8E+02 0.01 28.2 12.7 133 154-310 650-782 (1202)
439 PF14689 SPOB_a: Sensor_kinase 41.7 42 0.00092 22.5 3.4 44 62-105 6-51 (62)
440 PRK14962 DNA polymerase III su 41.4 3.8E+02 0.0082 26.8 12.6 30 39-71 192-221 (472)
441 COG5108 RPO41 Mitochondrial DN 40.4 1.9E+02 0.0041 29.9 8.7 24 15-38 33-56 (1117)
442 cd08326 CARD_CASP9 Caspase act 40.2 1.4E+02 0.003 21.5 6.6 61 133-197 20-80 (84)
443 PF10366 Vps39_1: Vacuolar sor 39.3 1E+02 0.0022 23.5 5.5 27 283-309 41-67 (108)
444 KOG0686 COP9 signalosome, subu 39.1 3.7E+02 0.008 26.1 13.8 58 47-105 152-215 (466)
445 KOG0376 Serine-threonine phosp 38.3 55 0.0012 32.0 4.7 57 289-345 12-68 (476)
446 PF08225 Antimicrobial19: Pseu 38.3 17 0.00037 18.0 0.7 12 445-456 10-21 (23)
447 COG4976 Predicted methyltransf 38.2 73 0.0016 28.0 4.9 56 259-314 5-62 (287)
448 KOG2659 LisH motif-containing 38.2 2.8E+02 0.0061 24.4 9.1 53 221-274 72-128 (228)
449 KOG3807 Predicted membrane pro 38.0 3.4E+02 0.0075 25.4 10.6 50 224-273 286-335 (556)
450 KOG2297 Predicted translation 37.8 3.4E+02 0.0073 25.2 12.0 19 179-197 322-340 (412)
451 COG0790 FOG: TPR repeat, SEL1 37.5 3.2E+02 0.007 24.9 19.8 122 127-253 128-276 (292)
452 PRK11639 zinc uptake transcrip 37.5 1.7E+02 0.0036 24.4 7.1 62 204-267 17-78 (169)
453 PF12968 DUF3856: Domain of Un 37.5 2E+02 0.0042 22.5 6.5 61 280-340 54-125 (144)
454 PF15161 Neuropep_like: Neurop 37.1 19 0.0004 23.2 0.9 19 439-458 11-29 (65)
455 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 2.3E+02 0.0049 23.0 7.6 63 201-265 9-71 (145)
456 PF14561 TPR_20: Tetratricopep 36.9 1.7E+02 0.0036 21.4 8.4 62 280-341 21-85 (90)
457 cd08332 CARD_CASP2 Caspase act 36.7 1.6E+02 0.0035 21.5 6.0 60 29-93 22-81 (90)
458 COG0735 Fur Fe2+/Zn2+ uptake r 36.6 2.1E+02 0.0045 23.2 7.3 27 83-109 26-52 (145)
459 PF11817 Foie-gras_1: Foie gra 36.5 1.3E+02 0.0029 26.8 6.8 51 255-305 184-242 (247)
460 PF04034 DUF367: Domain of unk 36.2 2.1E+02 0.0046 22.5 7.8 57 249-305 66-123 (127)
461 KOG3824 Huntingtin interacting 36.0 1.4E+02 0.003 27.6 6.5 45 293-337 128-172 (472)
462 PF10255 Paf67: RNA polymerase 35.6 1.9E+02 0.0042 28.0 7.9 56 150-205 125-191 (404)
463 COG5191 Uncharacterized conser 35.3 91 0.002 28.8 5.3 75 247-321 105-182 (435)
464 PF09454 Vps23_core: Vps23 cor 34.9 70 0.0015 21.7 3.6 51 6-57 4-54 (65)
465 KOG4814 Uncharacterized conser 34.8 4.2E+02 0.009 27.5 10.0 113 230-344 330-457 (872)
466 PF11838 ERAP1_C: ERAP1-like C 34.3 3.8E+02 0.0083 24.8 16.6 28 61-88 55-84 (324)
467 PRK11639 zinc uptake transcrip 34.3 1.9E+02 0.004 24.2 6.8 37 126-162 39-75 (169)
468 PF10475 DUF2450: Protein of u 33.5 2.1E+02 0.0046 26.3 7.8 25 177-201 196-220 (291)
469 KOG4334 Uncharacterized conser 33.3 8.8 0.00019 37.0 -1.3 151 3-160 408-573 (650)
470 smart00777 Mad3_BUB1_I Mad3/BU 32.8 2.5E+02 0.0053 22.1 8.1 40 300-339 82-123 (125)
471 COG5191 Uncharacterized conser 32.3 73 0.0016 29.4 4.2 64 277-340 103-167 (435)
472 PF07720 TPR_3: Tetratricopept 31.6 1.1E+02 0.0024 17.8 4.2 18 286-303 6-23 (36)
473 PF05119 Terminase_4: Phage te 31.6 2.1E+02 0.0046 21.0 6.3 35 368-402 57-91 (100)
474 TIGR02270 conserved hypothetic 31.3 5.1E+02 0.011 25.4 25.9 235 17-276 45-279 (410)
475 COG2912 Uncharacterized conser 31.2 1.9E+02 0.004 26.3 6.6 59 285-343 185-243 (269)
476 PF07575 Nucleopor_Nup85: Nup8 31.2 1.5E+02 0.0032 30.5 6.9 75 97-173 390-464 (566)
477 PF11768 DUF3312: Protein of u 31.2 3.1E+02 0.0068 27.7 8.6 26 80-105 411-436 (545)
478 PF11817 Foie-gras_1: Foie gra 31.1 3E+02 0.0066 24.5 8.2 21 184-204 184-204 (247)
479 COG4976 Predicted methyltransf 30.5 1E+02 0.0022 27.2 4.6 55 291-345 5-59 (287)
480 cd00280 TRFH Telomeric Repeat 30.4 3.4E+02 0.0075 23.1 7.6 67 93-162 85-158 (200)
481 PF14669 Asp_Glu_race_2: Putat 30.0 3.6E+02 0.0078 23.2 11.9 58 218-275 137-207 (233)
482 PF12796 Ank_2: Ankyrin repeat 29.9 2E+02 0.0044 20.3 6.0 22 52-74 30-51 (89)
483 KOG4567 GTPase-activating prot 29.9 4.6E+02 0.01 24.4 10.2 71 132-203 263-343 (370)
484 COG2178 Predicted RNA-binding 29.3 3.7E+02 0.008 23.1 9.1 17 327-343 133-149 (204)
485 PF09670 Cas_Cas02710: CRISPR- 29.3 5.3E+02 0.011 24.9 12.1 55 86-141 140-198 (379)
486 PF03745 DUF309: Domain of unk 28.8 1.8E+02 0.004 19.5 5.0 47 189-235 10-61 (62)
487 PF02607 B12-binding_2: B12 bi 28.8 1.3E+02 0.0029 20.9 4.5 40 87-126 11-50 (79)
488 cd07153 Fur_like Ferric uptake 28.6 1.5E+02 0.0033 22.5 5.2 47 82-128 5-51 (116)
489 cd07153 Fur_like Ferric uptake 28.4 1.5E+02 0.0033 22.5 5.1 46 184-229 6-51 (116)
490 COG4259 Uncharacterized protei 28.4 2.1E+02 0.0045 21.5 5.2 40 301-340 57-97 (121)
491 PF12069 DUF3549: Protein of u 28.3 5.2E+02 0.011 24.5 12.9 87 152-241 171-258 (340)
492 KOG3636 Uncharacterized conser 28.2 3.2E+02 0.007 26.7 7.8 32 39-71 177-208 (669)
493 PF02847 MA3: MA3 domain; Int 28.2 1.2E+02 0.0027 22.9 4.6 21 83-103 8-28 (113)
494 PRK13800 putative oxidoreducta 28.1 8.4E+02 0.018 26.9 26.3 248 42-309 632-880 (897)
495 PF12069 DUF3549: Protein of u 27.8 5.3E+02 0.011 24.4 12.6 172 41-224 122-309 (340)
496 PF12926 MOZART2: Mitotic-spin 27.2 2.5E+02 0.0054 20.4 6.4 43 199-241 29-71 (88)
497 PRK14958 DNA polymerase III su 27.2 4.3E+02 0.0093 26.8 9.2 89 36-146 191-279 (509)
498 PRK14956 DNA polymerase III su 26.8 4.8E+02 0.01 26.1 9.1 97 29-148 185-284 (484)
499 KOG0687 26S proteasome regulat 26.3 5.5E+02 0.012 24.1 10.9 91 149-241 106-209 (393)
500 PF12926 MOZART2: Mitotic-spin 26.2 2.6E+02 0.0056 20.3 6.7 63 8-73 8-70 (88)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-103 Score=807.67 Aligned_cols=474 Identities=37% Similarity=0.658 Sum_probs=465.4
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|+.||..||+.++.+|++.|+++.+.++|..+.+.|+.||..++|+|+++|+++| ++++|.++|++|+++|+++|
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~~vt~ 293 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAW 293 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhCCCCChhHH
Confidence 55678889999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.|++++|.++|..|.+.|++||..+|++||++|+++
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+.+|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|..+++++.+.+|.+..+|..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 87899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 400 (475)
|+++|++.|+|++|.++++.|+++|+++.|++||+++++.+|.|++|+..||+.+++++.++++..+|++.||.||+.++
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEeecCCcccccCC
Q 038542 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~~ 475 (475)
++++++++++..+.+||||||++|||+++|+|.||||+||||+|+|||+|+||||+++||||||||++|||||+|
T Consensus 614 ~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 688 (697)
T PLN03081 614 LPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688 (697)
T ss_pred hccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.3e-100 Score=802.44 Aligned_cols=471 Identities=39% Similarity=0.726 Sum_probs=462.6
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++| ++++|.++|++|.++|+++|
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK-CIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCeeeH
Confidence 56789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+||++|+++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 699999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 538 G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 538 GRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|++...|..
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 76899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 400 (475)
|.++|+..|+|++|.++++.|+++|++++||+||+++++.+|.|++++..||+.++|+..|+++..+|++.||.||+..+
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~ 776 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS 776 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEeecCCcccccCC
Q 038542 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~~ 475 (475)
+ ++++++|+..+.+||||||++|||++||++.||||+||||+|+|||+++||||++++|||||||++|||||+|
T Consensus 777 ~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 850 (857)
T PLN03077 777 M-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKD 850 (857)
T ss_pred c-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCC
Confidence 7 5588899999999999999999999999999999999999999999999999999999999999999999996
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-62 Score=514.19 Aligned_cols=449 Identities=26% Similarity=0.422 Sum_probs=405.6
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|++||.+||++++++|+..+++..+.++|..+.+.|+.||..++|+||.+|+++| +++.|.++|++|+++|+++|
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchh
Confidence 55679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+++|+++
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+. |+.|+..+|++||++|+++|++++|.++|++|. ++|..+|+++|.+|++.|+.++|..+|++|.+.-+++..+|..
T Consensus 417 ~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~ 494 (857)
T PLN03077 417 RK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIA 494 (857)
T ss_pred Hh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHH
Confidence 96 999999999999999999999999999999996 5799999999999999999999999999998765667788888
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECC----------------------EEEEEEeCCCCCccHHHHH
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN----------------------EIYEFVCGDKSHHQSKEIY 378 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 378 (475)
++.+|++.|+.+.+.+++..|.+.|+.++.......++. ....++.++..|++.+++.
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 888888888888888888888877776543221111100 0001355677788888888
Q ss_pred HHHHHHHHHHHHcCcccCCccccccCChhhhhhhhh---hhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHH
Q 038542 379 EMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN---KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455 (475)
Q Consensus 379 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~---~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 455 (475)
+.+++ |.+.|+.||..++...+..+.+.+.+. ...+.+...+|+.|...++. ++++.+.++|+..+|.++|.
T Consensus 575 ~lf~~----M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 575 ELFNR----MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHH----HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHH
Confidence 77776 888999999999998888777766653 34555666788888877666 89999999999999999999
Q ss_pred hH
Q 038542 456 KI 457 (475)
Q Consensus 456 ~~ 457 (475)
+|
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 87
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-60 Score=490.17 Aligned_cols=442 Identities=23% Similarity=0.336 Sum_probs=399.1
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHH
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li 84 (475)
++.||..||++++.+|++.++++.|.++|..|.+.|+.||..+||.|+++|+++| +++.|.++|++|++||+++||++|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-MLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++||++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
+|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g 355 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-G 355 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCchHHHHHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHESNYVLLSH 323 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 323 (475)
+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+|+++|+.++|.++|++|.+.+ .++..+|..++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999996 5899999999999999999999999999999876 456789999999
Q ss_pred HHHhccChhHHHHHHHHHHh-CCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccc
Q 038542 324 IYAKLLRWEKKTKIREVMDK-RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402 (475)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 402 (475)
+|.+.|+.++|.++|+.|.+ .|+.|+...... ++......++.+++++.++ +.++.||..++..
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~r~G~~~eA~~~~~-------~~~~~p~~~~~~~ 499 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLGREGLLDEAYAMIR-------RAPFKPTVNMWAA 499 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHHhcCCHHHHHHHHH-------HCCCCCCHHHHHH
Confidence 99999999999999999986 587775433222 3445566788888876654 4588999888777
Q ss_pred cCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEe
Q 038542 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~ 464 (475)
.+..+...+.+..-.+-....+++.+...+..+.+++-+..+|+-.+|.++...|.++.+..
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 76666554443322222222345655545566678888999999999999999999998743
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-58 Score=478.34 Aligned_cols=448 Identities=19% Similarity=0.239 Sum_probs=386.2
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC----CCChhHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS----ERDSVSWSAM 83 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~----~~~~~~~~~l 83 (475)
||..||+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++| +++.|.++|++|. .||..+||+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999998 4899999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--cCCCCCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~y~~~g 161 (475)
|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 678999999999999999999
Q ss_pred CHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 162 DVDKALKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 162 ~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
++++|.++|+.|.+. +..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999754 6699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 038542 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PM 313 (475)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~ 313 (475)
.|.+. |+.|+..+|+.||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+ .+
T Consensus 674 eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99996 99999999999999999999999999999999 789999999999999999999999999999999876 55
Q ss_pred CCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEEC-------------CEEEEEEeCC--CCCccHHHHH
Q 038542 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD-------------NEIYEFVCGD--KSHHQSKEIY 378 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~-------------~~~~~~~~~~--~~~~~~~~~~ 378 (475)
+..+|..++.+|.+.|++++|.++++.|.+.|+.++.......+. ..+..|-.+. .......+++
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 778999999999999999999999999999999887643332221 0001111110 0111234455
Q ss_pred HHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhccCCCCCCc--EEEecccccCcCcchhhHHHHh
Q 038542 379 EMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP--IRIVKNLRVCNDCHSATKFISK 456 (475)
Q Consensus 379 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~is~ 456 (475)
.. .++|.+.|+.||..++...+.-..+.+.. ...+.+-..+++.+.+++.. .++++.+ |..-++|+.+...
T Consensus 833 ~l----f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~e 905 (1060)
T PLN03218 833 MV----YRETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEE 905 (1060)
T ss_pred HH----HHHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHH
Confidence 44 45599999999999987776322222222 22345555677777776643 2455544 2122589999999
Q ss_pred HhCceEEe
Q 038542 457 IYNREIVV 464 (475)
Q Consensus 457 ~~~r~i~~ 464 (475)
+..+.|+-
T Consensus 906 m~~~Gi~p 913 (1060)
T PLN03218 906 AASLGVVP 913 (1060)
T ss_pred HHHcCCCC
Confidence 98887653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-53 Score=441.37 Aligned_cols=390 Identities=17% Similarity=0.215 Sum_probs=295.7
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIG 85 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~ 85 (475)
.+|...|..++..|++.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.| .+++|.++|+.|..||..+||.++.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667788888888888888888888888888774 456666777777777777 7888888888887778888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 165 (475)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 88888888888888888887788888888888888888888888888888888877777788888888888888888888
Q ss_pred HHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 166 ALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 166 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
|.++|++|. .||..+||+||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888887775 35777888888888888888888888888765 567788888888888888888888888888887
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHE 315 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~ 315 (475)
.+. |+.|+..+|+.+|.+|++.|++++|.++|++| ++.||..+|++++.+|++.|++++|.+++++|.+.+ +++.
T Consensus 606 ~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 774 77788888888888888888888888888777 677787888888888888888888888888877766 4566
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 395 (475)
.+|..|+.+|++.|++++|.++|++|.+.|+.|+...... ++.++...++.+++.+.+++ |++.|+.|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~--------LI~gy~k~G~~eeAlelf~e----M~~~Gi~P 752 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA--------LITALCEGNQLPKALEVLSE----MKRLGLCP 752 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHHHHHH----HHHcCCCC
Confidence 7778888888888888888888888877776664432111 34455566777777766555 66777777
Q ss_pred CCccccccCChhhhh
Q 038542 396 TTSEVLLDINEEDKE 410 (475)
Q Consensus 396 d~~~~~~~~~~~~~~ 410 (475)
|..++...+..+.+.
T Consensus 753 d~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 753 NTITYSILLVASERK 767 (1060)
T ss_pred CHHHHHHHHHHHHHC
Confidence 777766655444443
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.3e-34 Score=221.54 Aligned_cols=106 Identities=65% Similarity=1.003 Sum_probs=95.7
Q ss_pred CccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 038542 351 GSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDK--------EDALNKHSEKLAI 422 (475)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 422 (475)
+++|+.+ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6788876 8999999999998 444557788999999999988877655 5688999999999
Q ss_pred HHhccCCCCCCcEEEeccc-ccCcCcchhhHHHHhHhCceEEeecCCcccccC
Q 038542 423 AFALLKTPPGTPIRIVKNL-RVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474 (475)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~ 474 (475)
+||++++ +|+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=1.7e-21 Score=209.47 Aligned_cols=329 Identities=8% Similarity=0.032 Sum_probs=244.9
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMI 84 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li 84 (475)
.+..++..+...+...|+.++|..+++.+.+.+ +.+...+..+...|.+.| ++++|..+++.+.+ .+..+|..+.
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG-QLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677777788888888888888888887764 556667777888888887 88888888887753 3567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.+|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888887653 3355667777777888888888888888887653 335667777888888888888
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 165 KALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 165 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
+|..+++.+.+. +...|..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888877532 45667777777888888888888888877753 4446666777777788888888888877776
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
..+.+...+..+...|.+.|++++|...|+++ .. ++++.+++.+...+...|+ ++|...++++.+..|.++..+.
T Consensus 765 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 --THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred --hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 34556677777777788888888888887776 22 2356677777777777777 6677777777777777777777
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++.+|...|++++|.+.++++.+.+
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777777777777777777655
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=3.1e-21 Score=207.55 Aligned_cols=332 Identities=14% Similarity=0.105 Sum_probs=274.6
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAM 83 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~l 83 (475)
+++..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.| ++++|.+.|+++.+ .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4456677777788888888888888888887754 455566777777888877 88888888887753 366788888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
...+.+.|++++|..+|.++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887653 3456677778888888899999998888887653 45677888899999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 164 DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 164 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
++|...|+++.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988753 356778888888999999999999999988753 4457788888899999999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
.. .+++...+..+...+.+.|++++|.+.|+.+ ...|+..++..+..++...|++++|.+.++++.+..|.+...+.
T Consensus 697 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 697 KQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred hh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 73 3556778888999999999999999999988 55676678888999999999999999999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++.+|...|++++|.+.++++.+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.3e-20 Score=182.80 Aligned_cols=293 Identities=13% Similarity=0.067 Sum_probs=238.4
Q ss_pred HHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCC
Q 038542 54 MYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD---EITMVTVLSACTDLGA 127 (475)
Q Consensus 54 ~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~ 127 (475)
.+...| +++.|...|.++.+ | +..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+
T Consensus 44 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNE-QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcC-ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566 99999999999875 3 556888999999999999999999999887532222 2456777888899999
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCChHHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT--------IVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~ 199 (475)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998753 3467788899999999999999999999886431 1245667778889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 278 (475)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|++++|...++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998853 334567788889999999999999999999863 32223467888999999999999999999998 556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh---ccChhHHHHHHHHHHhCCCccCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK---LLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.+++..+++.|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778899999999999999999999999988764 56666666554 568999999999999999988886
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=176.23 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=241.2
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-C------hhHHHHHHHHHHHc
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-D------SVSWSAMIGGYARL 90 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~ 90 (475)
..+...|+++.|...+..+.+.+ +.+..++..+...|.+.| ++++|..+++.+... + ...|..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34567799999999999999874 456678899999999998 999999999987652 1 25688999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHH
Q 038542 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKA 166 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A 166 (475)
|++++|+.+|.++.+.. +++..++..+...+...|++++|...+..+.+.+..+.. ..+..+...|.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 456778999999999999999999999999987543322 2456778889999999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 167 LKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 167 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
...|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998763 2456888899999999999999999999988642222467888999999999999999999998863
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCA---RGELKLAESITKRLIGN 310 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 310 (475)
.|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 567777789999999999999999999877 667999999988887764 56889999999988753
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-17 Score=170.69 Aligned_cols=325 Identities=11% Similarity=0.010 Sum_probs=264.2
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 88 (475)
-...++..+.+.|+++.|..+++..+... +.+......++......| +++.|...|+++.+ | +...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556778889999999999999998875 333444555556666677 99999999999864 3 6678999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 89 RLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
+.|++++|+..++++... .| +...+..+...+...|++++|...+..+...... +...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999999999875 45 4667778888999999999999999988776433 33344333 3478899999999
Q ss_pred HHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHh
Q 038542 168 KLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK----GREYFDSM 239 (475)
Q Consensus 168 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~m 239 (475)
..++.+.+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987543 23444556678899999999999999999864 4456778889999999999986 79999988
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+ -.+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.+...
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 86 33445678899999999999999999999988 4455 56678888999999999999999999999999987766
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+..+..++...|++++|...++...+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6677888999999999999999887653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6e-17 Score=165.80 Aligned_cols=248 Identities=13% Similarity=0.033 Sum_probs=158.8
Q ss_pred ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 038542 92 LSTDAIDLFRQMQISG-VCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 169 (475)
++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +.+...|..+...|...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555555555555433 123 23344555555666777777777777776652 22344666667777777777777777
Q ss_pred HHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 038542 170 FRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246 (475)
Q Consensus 170 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 246 (475)
|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+ ..+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P 464 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFP 464 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 776542 245667777777777777777777777777643 33455566667777777777777777777765 233
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-------P-IIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+...++.+..++...|++++|.+.|++. .+.|+ . ..++..+..+...|++++|.++++++++.+|.+...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44567777777777777777777777775 33331 1 111222222334577778888888777777777777
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..++.+|...|++++|.+.+++..+
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77778888888888888887777654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=5.4e-18 Score=158.99 Aligned_cols=325 Identities=13% Similarity=0.105 Sum_probs=255.1
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC----------------
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---------------- 74 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---------------- 74 (475)
.+|+.+...+-..|+++.|..+++.+++.. +.....|..+..++...| +.+.|.+.|.+..+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 467777777778888888888888887764 445566777777777766 76666666654322
Q ss_pred --------------------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHH
Q 038542 75 --------------------R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 75 --------------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 132 (475)
| =.+.|+.|...+-.+|+...|++.|++... +.|+ ...|-.|-..+...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHH
Confidence 1 134677777777777888888888877776 3555 457777777788888888887
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
..+.+..... +-...++..|...|-..|++|-|+..+++..+. -..+|+.|..++-..|+..+|...+.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 7777766542 223455666777788888888888888877643 34789999999999999999999999988852
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRT 286 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 286 (475)
+-.....+.|...+...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++. .++|+ ...|+.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 33456788899999999999999999988774 3444 467888999999999999999999988 78886 568999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+...|...|+++.|.+.+.+++..+|.-..++..|..+|-..|+..+|.+-++...+.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999998899999999999999999999999887763
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.8e-16 Score=160.58 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=242.2
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 87 (475)
..+..++.+....|+++.|...++.+.+.. +.+...+..+...+.+.| ++++|...|++..+ | +...|..+...+
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345555566778999999999999999875 556678888889999998 99999999999865 3 677899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
...|++++|...++.+..... .+...+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998876532 22333333 3447889999999999999887654444555566678899999999999
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 168 KLFRSMNG---RTIVSWTSVIAGLAMHGRGLE----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 168 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..|++... .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++...
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998763 356788889999999999986 899999998863 4456788899999999999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPII-WRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.. -+.+...+..+..+|.+.|++++|...|+++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 312 ~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 312 AT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 63 3334567788899999999999999999988 45565434 44456788999999999999999999988753
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=2.3e-15 Score=154.15 Aligned_cols=359 Identities=10% Similarity=-0.066 Sum_probs=265.5
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHH
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYAR 89 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 89 (475)
+...-..+.+.|+++.|...|+.+++. .|+...|..+...|.+.| ++++|.+.++...+ | +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 445566788899999999999999876 678888999999999999 99999999988764 3 56789999999999
Q ss_pred cCChhHHHHHHHHHHHCCC----------------------------CCC----HHHHHHHHH-----------------
Q 038542 90 LGLSTDAIDLFRQMQISGV----------------------------CPD----EITMVTVLS----------------- 120 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~----------------------------~p~----~~t~~~ll~----------------- 120 (475)
.|++++|+.-|......+- .|. .......+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432110 010 000000000
Q ss_pred ----------H------HhccCChHHHHHHHHHHHHcC-C-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh
Q 038542 121 ----------A------CTDLGALEVGKWVESFIEKQM-V-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIV 179 (475)
Q Consensus 121 ----------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~ 179 (475)
. ....+.+++|...++...+.+ . +.....++.+...|...|++++|...|++..+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 0 011246788888898888765 2 23455788888899999999999999998764 3 456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+ ..+.+...+..+..++
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 88888899999999999999999998863 44577888899999999999999999999886 3344567788888999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH-------HHHHHHhccC
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL-------LSHIYAKLLR 330 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~ 330 (475)
.+.|++++|...|++. ...| +...|+.+...+...|++++|...++++++..|.+...+.. ....|...|+
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987 4445 57888999999999999999999999999998765443321 1223344699
Q ss_pred hhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHH
Q 038542 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 386 (475)
+++|.+++++..+.. ++....+..+ .......++.+++...+++..+
T Consensus 524 ~~eA~~~~~kAl~l~--p~~~~a~~~l-------a~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 524 FIEAENLCEKALIID--PECDIAVATM-------AQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHH-------HHHHHHccCHHHHHHHHHHHHH
Confidence 999999998876643 2221111110 1112234667777777776543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=2.6e-15 Score=163.77 Aligned_cols=316 Identities=13% Similarity=0.092 Sum_probs=208.6
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC---hhHHHH----------
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD---SVSWSA---------- 82 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~---~~~~~~---------- 82 (475)
.++...|++++|...++.+++.. +.+...+..|...|.+.| ++++|...|++..+ |+ ...|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45667899999999999998874 557788889999999998 99999999988754 22 122322
Q ss_pred --HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 83 --MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 83 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 2346778899999999999998863 3356677778888999999999999999998764 224445555555553 3
Q ss_pred CCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 038542 161 GDVDKALKLFRSMNGRT------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 228 (475)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 44555655555443211 1123334444555556666666665555532 1223344455555555566
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHH--------------------------------------------HHHHHHHHHcCC
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHY--------------------------------------------GCMVDMLCRSGR 264 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g~ 264 (475)
+++|...++.+.+. .+.+...+ ..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 66655555555431 11111111 123344555666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++|.++++.-+ ++...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++...+
T Consensus 589 ~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 666666666332 34456667777788888888888888888888888888888888888888888888888876654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=6e-15 Score=154.01 Aligned_cols=331 Identities=13% Similarity=0.044 Sum_probs=248.2
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~ 85 (475)
+...+..+..++...|++++|..+++.+++.. +.+...+..+...+.+.| ++++|...+++..+ | +.. |..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG-QYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 33457888889999999999999999988874 455667778888888988 99999999998864 3 556 888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH----------------------------------
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEV---------------------------------- 130 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~---------------------------------- 130 (475)
++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999885 454 3344444444444444443
Q ss_pred ------------HHHHHHHHHHc-CCCCCcc-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC--hhH--HHHHHHHH
Q 038542 131 ------------GKWVESFIEKQ-MVNRSVG-LC-NA---LIDMFAKCGDVDKALKLFRSMNGRT--IVS--WTSVIAGL 188 (475)
Q Consensus 131 ------------a~~~~~~~~~~-~~~~~~~-~~-~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~ 188 (475)
|...++.+.+. ...|+.. .+ .+ .+.++...|++++|+..|+++...+ ... -..+..+|
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 33344444432 1122221 11 11 1234457799999999999987542 111 12256789
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCC---hhHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG----------IIPK---IEHY 252 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~ 252 (475)
...|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987643111 124466677788999999999999999886310 1123 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|++.++++++..|++...+..++..+...|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 67788899999999999999998 3344 678899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 038542 331 WEKKTKIREVMDKR 344 (475)
Q Consensus 331 ~~~a~~~~~~m~~~ 344 (475)
|++|.++++.+.+.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=1.1e-14 Score=158.96 Aligned_cols=252 Identities=14% Similarity=0.050 Sum_probs=194.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 3455566778888888888888775 34 45566677777888888888888888887653 23444555555667778
Q ss_pred CCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 038542 161 GDVDKALKLFRSMNGR----TI---------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 227 (475)
|+.++|...++.+... +. ..+..+...+...|+.++|..+++. .+++...+..+...+.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 8888888888877532 11 1123445678888999999998872 3556667778899999999
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
+.++|...|+...+ .-+.+...+..++..|...|++++|.+.++.. ...| +..++..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987 33456788999999999999999999999987 3444 56677778888999999999999999
Q ss_pred HHHhCCCCCCc------hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 306 RLIGNEPMHES------NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 306 ~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++++..|.++. .+..+..++...|++++|.+.++....
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99987655432 455678899999999999999988854
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-15 Score=143.82 Aligned_cols=281 Identities=16% Similarity=0.148 Sum_probs=239.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSE--RD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 122 (475)
+|+.|...+-..| ++..|...|++... |+ ...|-.|...|...+.+++|+..|.+.... .|+ ...+..+...|
T Consensus 220 awsnLg~~f~~~G-ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 220 AWSNLGCVFNAQG-EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eehhcchHHhhcc-hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 4555555555556 88888888888765 32 568999999999999999999999998874 665 56788888889
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 038542 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
-..|.++.|...+++.++... --+..|+.|.+++-..|++.+|.+.+.+... + -..+.+.|...|...|.+++|..
T Consensus 297 yeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred eccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999988642 2467899999999999999999999998763 2 45688889999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038542 200 LFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM-P 276 (475)
Q Consensus 200 l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 276 (475)
+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+. ..|+.+...|-..|+.+.|.+.+.+. .
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9999888 4565 4578999999999999999999999887 677774 78999999999999999999999887 6
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 277 IEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 277 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
+.|. ....+.|...|...|++.+|+..++..+++.|+.+.+|-.++.+.--..+|.+-.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 7774 56788999999999999999999999999999999999999888776677766433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=9.7e-14 Score=144.98 Aligned_cols=329 Identities=10% Similarity=-0.036 Sum_probs=252.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
.-..=.+....-.|+.++|.+++....... +.+...+..+...+.+.| ++++|.++|++..+ .+...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334445667778899999999999988643 556667899999999998 99999999999543 3677888999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
...|++++|+..+++..... +.+.. +..+..++...|+.++|...++.+.+... .+..++..+..++...|..++|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998862 33455 77788889999999999999999998753 35556667778887778877666
Q ss_pred HHHHhcCC-------------------------------------------------CCh---hHH----HHHHHHHHHc
Q 038542 168 KLFRSMNG-------------------------------------------------RTI---VSW----TSVIAGLAMH 191 (475)
Q Consensus 168 ~~~~~~~~-------------------------------------------------~~~---~~~----~~li~~~~~~ 191 (475)
+.++.... .+. ..+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 65553322 000 000 0112345677
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHHcCCHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (475)
|++++|+..|+++.+.+.+ |+.. -..+..+|...|++++|..+|+.+.......+ .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999887532 3322 22257789999999999999999875311111 134566777788999999999
Q ss_pred HHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccCh
Q 038542 269 HEFIQKM-PIEA-------------N---PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331 (475)
Q Consensus 269 ~~~~~~m-~~~p-------------~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 331 (475)
..+++.+ ...| + ...+..+...+...|+.++|+++++++....|.++..+..++.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999988 2222 2 234556777889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|.+.+++..+..
T Consensus 410 ~~A~~~l~~al~l~ 423 (765)
T PRK10049 410 RAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999887643
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=4.4e-13 Score=140.66 Aligned_cols=316 Identities=11% Similarity=0.018 Sum_probs=222.6
Q ss_pred HHcCCCcHHHHHHHHHHHHh-c-CCCChhHHHHHHHHHHhCCCC---HHHHHHH------------Hh------------
Q 038542 20 CAGIGDLNLGKSVHGAVLKF-Q-FGDDIHVQNTLVHMYGSCEGG---IELGRKV------------FD------------ 70 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~gg~---~~~A~~~------------f~------------ 70 (475)
....|+.++|.+++...... + -..+....+-|+..|.+.+ . ..++..+ ..
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP-YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC-cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34567788888888777652 1 1224445557777777765 4 2233222 11
Q ss_pred -ccCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 038542 71 -EMSE---R--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 71 -~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (475)
.... + +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+... +
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 1111 2 55677777777776 7888888877777664 466555444455556888888888888887554 3
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT---SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
|+...+..+...+.+.|+.++|...|++..+.+...++ .+.......|++++|+..+++..+. .|+...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44445666777888888888888888877654332222 2233334458888888888888874 567778888888
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
++.+.|+.++|...++.... --+.+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888876 33445667777788888888888888888877 4445 57778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
|...++++++..|.+..+.........+..+++.+.+.+++--..+
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888776655443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=5.9e-12 Score=129.68 Aligned_cols=325 Identities=11% Similarity=0.032 Sum_probs=233.0
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--ChhHHHHHHHHHHHcCChh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER--DSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~ 94 (475)
...+...|+++.|.++++.+.+.. +.+..++..++..|...+ +.++|++.++++... +...+-.++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 346677799999999999998875 455667777788888888 999999999888764 3334433333333355665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH--------------------------------------
Q 038542 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES-------------------------------------- 136 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------------------------------------- 136 (475)
+|++.++++.+.. +-+...+..+..+..+.|....|.++..
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6899999988763 2245455555555555554433332222
Q ss_pred ----------HHHHc-CCCCC-ccH-HHHH---HHHHHhcCCHHHHHHHHHhcCCCC--h--hHHHHHHHHHHHcCChHH
Q 038542 137 ----------FIEKQ-MVNRS-VGL-CNAL---IDMFAKCGDVDKALKLFRSMNGRT--I--VSWTSVIAGLAMHGRGLE 196 (475)
Q Consensus 137 ----------~~~~~-~~~~~-~~~-~~~l---i~~y~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~ 196 (475)
.+... +-.|. ... ..+. +-++.+.|+..++++.|+.++... + .+--++.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 11111 11121 111 1222 345667788999999999988442 2 344567889999999999
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCCh---hHHHHHHHH
Q 038542 197 AVALFEEMLEAG-----VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG----------IIPKI---EHYGCMVDM 258 (475)
Q Consensus 197 A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~ 258 (475)
|+.+|+.+.... ..++......|..++..++++++|..+++.+.+..- -.|+. ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986643 123344457889999999999999999999987311 01222 334556778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+...+|++..+...++.++...|+|++|.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 88999999999999998 3344 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 038542 337 IREVMDKR 344 (475)
Q Consensus 337 ~~~~m~~~ 344 (475)
+.+.+.+.
T Consensus 506 ~~~~l~~~ 513 (822)
T PRK14574 506 LTDDVISR 513 (822)
T ss_pred HHHHHHhh
Confidence 98777653
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=3.2e-12 Score=131.64 Aligned_cols=318 Identities=14% Similarity=0.056 Sum_probs=207.4
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCCCHHHHHHHHhccCCCChh-HHHHH--HHHHHHcCChh
Q 038542 20 CAGIGDLNLGKSVHGAVLKFQFGDDI--HVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV-SWSAM--IGGYARLGLST 94 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~ 94 (475)
..+.|+++.|...+.++.+. .|+. .++ .++..++..| +.++|+..+++...|+.. .+..+ ...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566666777776666655 3332 233 5666666666 666666666666654222 22222 34555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
+|+++|+++.+.. +-+...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666666542 223444445555566666666666666665554 2333333333333333444434555554432
Q ss_pred C--C-Ch--------------------------------------------------------------------hHHH-
Q 038542 175 G--R-TI--------------------------------------------------------------------VSWT- 182 (475)
Q Consensus 175 ~--~-~~--------------------------------------------------------------------~~~~- 182 (475)
+ | +. .-+.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 1 0 00 0000
Q ss_pred --------------------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 183 --------------------SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 183 --------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
-.+-++...|+..++++.|+.+...|.+....+-..+.++|...+.+++|..++..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 123345567888999999999998876545567788999999999999999999998764
Q ss_pred cC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--------------CC--CH-HHHHHHHHHHHhcCCHHHHH
Q 038542 243 FG----IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI--------------EA--NP-IIWRTLISACCARGELKLAE 301 (475)
Q Consensus 243 ~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--~~-~~~~~li~~~~~~g~~~~a~ 301 (475)
.+ ..++......|.-+|...+++++|..+++++.- .| |- .....++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 233445567889999999999999999998811 12 21 23344567788899999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.++++....|.|......+..++...|.+.+|.+.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999766543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=8.3e-12 Score=131.22 Aligned_cols=313 Identities=11% Similarity=0.026 Sum_probs=232.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C-----ChhHHHHHHHHHHHcCC---hh
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R-----DSVSWSAMIGGYARLGL---ST 94 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 94 (475)
+...++.+.+..+.+.. +-+....--+.-...+.| +.++|.++|..... + +...-+-++..|.+++. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG-QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc-cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55566666666666652 223333333444445667 99999999988765 2 23345577788888766 34
Q ss_pred HHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 95 DAIDL----------------------FRQMQIS-GV-CP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 95 ~A~~~----------------------~~~m~~~-g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
+++.+ +...... +. ++ +...|..+..++.. ++.++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 44333 1111111 12 23 45566666666655 88888999888777653 4544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+.......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 444445556789999999999998753 344567777888999999999999999998864 33334444455566677
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
|++++|...++...+ ..|+...|..+..++.+.|++++|...+++. ...| +...+..+..++...|+.++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999885 3567889999999999999999999999998 5566 5778888888999999999999999
Q ss_pred HHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 305 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+++++..|.++..+..+..+|...|++++|...+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987644
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.2e-15 Score=140.59 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=110.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT-VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+.+.|++++|++++.+......+|+...|.. +...+...++.+.|...++.+.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 446677788888999888866544432455544444 444566788889999999988876543 56667777777 688
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 161 GDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 161 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
+++++|.+++...-+ ++...+..++..+.+.++++++..+++...... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876643 456677788888999999999999999977543 34567778888888999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
...+. .+.+......++..+...|+.+++.+++... ....|+..|..+..++...|+.++|...+++..+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 98863 2335778888999999999999888777766 2234667888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.....+..++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=4.2e-12 Score=125.07 Aligned_cols=328 Identities=14% Similarity=0.119 Sum_probs=254.8
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhcc---CCCChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM---SERDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~---~~~~~~~~~~li~~~~ 88 (475)
..-.........|+++.|..++.++++.. +.....|-.|...|-..| +.+++...+--. ...|..-|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33333444444599999999999999986 667788999999999998 999998876443 3457889999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHH----HHHHHHhcCCHH
Q 038542 89 RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA----LIDMFAKCGDVD 164 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~ 164 (475)
+.|++++|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999874 45655666677788999999999999999988754333333333 355677778888
Q ss_pred HHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 038542 165 KALKLFRSMNG--R---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF----------------------- 216 (475)
Q Consensus 165 ~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----------------------- 216 (475)
.|.+.++.... . +...++.++..|.+...++.|......+......+|..-+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 89988887764 2 4467889999999999999999999888762222222111
Q ss_pred ---HHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHH
Q 038542 217 ---VGLLSACSHCGLVDKGREYFDSMKNDFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLI 288 (475)
Q Consensus 217 ---~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li 288 (475)
..+.-++.+....+....+....... . ..-+...|.-+.++|...|++.+|.++|..+ +...+...|-.+.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 11222334444444444455555543 5 3345678899999999999999999999998 2223678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..|...|.+++|.+.+++++...|++..+-..|...|-+.|+.++|.+++..+..
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999988763
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=7.2e-12 Score=121.00 Aligned_cols=274 Identities=11% Similarity=0.101 Sum_probs=209.7
Q ss_pred CCHHHHHHHHhccCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHH
Q 038542 60 GGIELGRKVFDEMSER--D-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV--TVLSACTDLGALEVGKWV 134 (475)
Q Consensus 60 g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~ 134 (475)
|+++.|++.+...++. + ...|-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4999999999887653 2 333433345558899999999999999874 56654433 335568889999999999
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-----------VSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999876 44778889999999999999999999998875321 1344444444445555666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NP 281 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 281 (475)
.-.. .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++. ...| |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 5332 3557778888999999999999999999888763 444422 2233334569999999999887 4455 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+.++...|...+++++|.+.|+++.+..|++ ..+..|..++.+.|+.++|.+.+++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678889999999999999999999999999975 5678999999999999999999986543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.7e-11 Score=109.90 Aligned_cols=329 Identities=15% Similarity=0.159 Sum_probs=238.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-CC-H------------------------HH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GG-I------------------------EL 64 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-g~-~------------------------~~ 64 (475)
.|=+.+++. ...|.+..+--+++.|...|.+.+..+...|+..-+-.+ .+ . +-
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 355666654 456889999999999999998888877777665432211 01 1 11
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 038542 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 65 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (475)
|.-+|+.. .+...||.+||.++++--..+.|.+++++-.....+.+..+|+.++.+.+-. .++.+..+|+...+.
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22233332 2367899999999999999999999999999888899999999999886543 348889999999999
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHH----HhcC----CCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHc----CCC-
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLF----RSMN----GRTIVSWTSVIAGLAMHGRGLE-AVALFEEMLEA----GVP- 210 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~- 210 (475)
||..++|+++.+.++.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ |..++.+++.. .++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988776554 4554 5778899999999999988755 55555555432 222
Q ss_pred --C-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC---CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC
Q 038542 211 --P-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG---IIPK---IEHYGCMVDMLCRSGRVKEAHEFIQKM---PIE 278 (475)
Q Consensus 211 --p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~ 278 (475)
| |...|...+..|.+..+.+.|.++..-+...-+ +.|+ ..-|..+..+.++....+.-.+.|+.| -.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 3 455678889999999999999998877664211 2233 234667888889999999999999998 344
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------CCCCCC----------------------
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIG---------------------NEPMHE---------------------- 315 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------~~p~~~---------------------- 315 (475)
|+..+...++++....+.++-.-+++..+.+ ..|..+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777766655554444331 123221
Q ss_pred ------------chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 316 ------------SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 316 ------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
......+-.+.+.|+.++|.+++..+.+++
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 123344556678999999999999987655
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3.4e-11 Score=116.32 Aligned_cols=279 Identities=9% Similarity=-0.045 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HhCCCCHHHHHHHHhccCCC--ChhHHH--HHHHHHHHcCChhHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-GSCEGGIELGRKVFDEMSER--DSVSWS--AMIGGYARLGLSTDAI 97 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~gg~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~A~ 97 (475)
.|+++.|++......+. .++...+-.+..-. .+.| +++.|.+.|.++.+. +..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g-~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRG-DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999877765554 22333333333334 5556 999999999998763 332222 3367889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-------cHHHHHHHHHHhcCCHHHHHHHH
Q 038542 98 DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-------GLCNALIDMFAKCGDVDKALKLF 170 (475)
Q Consensus 98 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~ 170 (475)
..++++.+.. +-+...+..+...+.+.|+++.+..++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998864 335677888889999999999999999999988755322 13334454455556677788888
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 171 RSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 171 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
+..+. .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+ ..+-
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~ 326 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGD 326 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCC
Confidence 88763 47788889999999999999999999999883 556532 234445566999999999999987 4455
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
|+..+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6677889999999999999999999998 778999999999999999999999999999987653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=4.7e-11 Score=115.96 Aligned_cols=275 Identities=9% Similarity=0.025 Sum_probs=177.3
Q ss_pred CHHHHHHHHhccCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSER--D-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
+++.|++.+.+..+. + ...+-....++.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|...+
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888776542 2 333444456677778888888888887654 34432 3333466677788888888888
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWT----SVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
+.+.+.. +.+..+...+..+|.+.|++++|.+.+....+. +...+. ....+....+..+++.+.+..+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 8888775 335667778888888888888888888777643 222221 11112233333344444555555432
Q ss_pred C---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHH--HHcCCHHHHHHHHHhC-CCCC-C
Q 038542 209 V---PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY-GCMVDML--CRSGRVKEAHEFIQKM-PIEA-N 280 (475)
Q Consensus 209 ~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~~p-~ 280 (475)
. +.+...+..+...+...|+.++|.++++...+. .|+.... ..++..+ ...++.+.+.+.+++. ...| |
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 1 136677777788888888888888888887763 2332210 0122222 3346677777777665 3334 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 281 P--IIWRTLISACCARGELKLAESITK--RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 281 ~--~~~~~li~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+ ....++...+.+.|++++|.+.|+ ...+..|++ ..+..+..++.+.|+.++|.+++++-.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 566678888888888888888888 455666754 446688888888888888888887653
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.9e-10 Score=104.47 Aligned_cols=334 Identities=10% Similarity=0.093 Sum_probs=240.3
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC----CCChhHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS----ERDSVSWSAM 83 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~----~~~~~~~~~l 83 (475)
-+..||..++.+.++--..+.|.+++.+......+.+..++|.+|.+-+-.. + .++..+|. .||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-G----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-c----HHHHHHHHHhhcCCchHhHHHH
Confidence 3567999999999999999999999998887777889999999998765444 3 45555554 5899999999
Q ss_pred HHHHHHcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHH----cCCCC----CccHH
Q 038542 84 IGGYARLGLSTD----AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV-GKWVESFIEK----QMVNR----SVGLC 150 (475)
Q Consensus 84 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~ 150 (475)
+++.++.|+++. |++++.+|++.|+.|...+|..++..+.+.++..+ +..+...+.. ..++| +...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998764 57788899999999999999999998888777643 4444444432 12322 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR--------T---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
..-++.|.+..+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 66677788888888888876655422 1 133556777788888899999999999887778999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-C--------HHH-----HHHHHH-------hC-CC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-R--------VKE-----AHEFIQ-------KM-PI 277 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~m-~~ 277 (475)
++|..-.+.++-.-++|..++. +|..-+...-.-+...+++.. . +.. |..+++ ++ ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999998888888887 464444444444444444443 1 111 111111 11 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCc--hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNE---PMHES--NYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
.-.....+.+...+.+.|..++|.+++..+.+.+ |..+. +..-|.+.-....+...|..+++.|...+..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3345566777777899999999999999986544 44332 2334555556677899999999999776654
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=7.6e-12 Score=119.63 Aligned_cols=274 Identities=17% Similarity=0.066 Sum_probs=212.6
Q ss_pred CHHHHHHHHhccCC--CCh-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSE--RDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGV--CPDEITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
+.++|...|..+++ +|+ .....+..+|...+++++|.++|+.+.+... .-+...|+++|--+-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 57789999998765 243 3445678899999999999999999987521 125667888776543321 12222
Q ss_pred -HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 136 -SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 136 -~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
+.+++. -+..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223333 24578899999999999999999999999987654 46777777778888999999999998865 333
Q ss_pred CH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 038542 212 DD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTL 287 (475)
Q Consensus 212 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 287 (475)
.. ..|..+...|.+.++++.|+-.|+...+ +.| +.....++...+-+.|+.++|+++++++ -..| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 3566678899999999999999998874 444 5566777888899999999999999998 3333 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..+...+++++|.+.++++.+.-|++...|..+...|-+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566778899999999999999999999999999999999999999999888666543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=7.2e-14 Score=128.85 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHhcc-CC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEM-SE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
.+..++.+.| +++.|+++++.. .. .|..-|..+.......+++++|++.++++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 3455555555 666666666332 11 13444555555555566666666666666654321 33344444444 46
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-----GRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
.+++++|..+.....+.. ++...+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665544332 344455566666667777777777666643 2355666677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 278 (475)
.+++..+.. +.|......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|...|++. ...
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 777777752 224556667777777777777777777777663 2455566777777777888888888877776 323
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 279 A-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 279 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
| |+.+...+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 666667777777888888888777776543
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-10 Score=105.16 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=191.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN--RSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g 161 (475)
..++....+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3455555567777777777777665444443333444455677888888888888876311 1445555544 33332
Q ss_pred C--HHH-HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 162 D--VDK-ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 162 ~--~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
+ +.- |..+++ +.+--+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++.
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 111 222221 112234556667777888899999999999999864 33456788888899999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
..+ -.+-|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.++...+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 886 44557789999999999999999999999998 6677 8999999999999999999999999999999877788
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+..|...|-+.++.++|.+.+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987765
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=7.1e-11 Score=114.72 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=144.8
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhCCCCHHHHHHHHhccCC--CC--hhHHHHHHHHHHHcCChhHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQ-NTLVHMYGSCEGGIELGRKVFDEMSE--RD--SVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~gg~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A 96 (475)
..|+++.|++.+....+. .|+...+ -.....+.+.| +.+.|.+.|.+..+ |+ ....-.....+.+.|++++|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 346666666666655544 2332222 22233344445 66666666666422 22 22233345556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH---H----hcCCHHHHHHH
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF---A----KCGDVDKALKL 169 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~ 169 (475)
...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666643 2244455566666666666666666666666665332221111111111 1 11222333444
Q ss_pred HHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 170 FRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA---FVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 170 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
++..+. .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 444442 25566666666666666666666666666664 233321 0111112233455666666666555431
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK--M-PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
.-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222113444566666666666666666663 2 445666666666666666666666666666653
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-11 Score=118.34 Aligned_cols=279 Identities=11% Similarity=0.011 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChhHHHH
Q 038542 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE------RDSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
+..+|...|..+... +..+..+...+..+|...+ ++++|+++|+.+.+ .+...|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~-~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELI-EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 467788888884443 3444577788999999999 99999999999875 267788877654432 22333
Q ss_pred HHH-HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038542 99 LFR-QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177 (475)
Q Consensus 99 ~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 177 (475)
.+. .+... -+-.+.||-.+.+.|+-+++.+.|.+.|++.++... ...++|+.+..-+.....+|+|...|+.....|
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 332 22222 234578999999999999999999999999988632 277889988888899999999999999988777
Q ss_pred hhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 038542 178 IVSWT---SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254 (475)
Q Consensus 178 ~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 254 (475)
...|| -+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|++++++... --+.|+..---
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHH
Confidence 75555 46778999999999999999998854 44566677778888899999999999999885 22334555555
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.+..+...+++++|+..++++ .+.| +..++..+...|.+.|+.+.|..-|..+.+++|.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677888899999999999999 4556 56778888899999999999999999999999864
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.2e-10 Score=104.69 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=124.6
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 3445556666666555443 234444445556666666666677666655443 455666777777888888888888
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACC-ARGELKLAESITKRLIGN 310 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~ 310 (475)
.+.+-.--+ -++.+.++..-|..-|....-+++|...|++. -++|+..-|..++.+|. +.|+++.|..+++...+.
T Consensus 612 fq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 612 FQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776654332 34557777777777777887888999999888 57899999999988775 589999999999999999
Q ss_pred CCCCCchHHHHHHHHHhccC
Q 038542 311 EPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 311 ~p~~~~~~~~l~~~~~~~g~ 330 (475)
.|.+......|.+.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999988899998887774
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=4.3e-12 Score=124.43 Aligned_cols=268 Identities=14% Similarity=0.202 Sum_probs=197.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038542 98 DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177 (475)
Q Consensus 98 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 177 (475)
.++..+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999999 9999998888889999999999999999988776 678
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..+|..|..+|..+|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999876 333332 223345566666666666666665443335556654 3556
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG-ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
...-.|.++.+.+++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..++..-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66777889999999988864431112222355554433 33443444444444 34 67899999999999999999999
Q ss_pred HHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCC
Q 038542 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405 (475)
Q Consensus 337 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~ 405 (475)
++..|+++|+...+...|..+ +|.. ....++.++.-|++.|+.|+..|....+.
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~-------~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGIN-------AAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCc-------cchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999888854 3311 22345556667999999999988665443
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=4.9e-11 Score=106.59 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=161.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345677788889999999999999987653 356778888889999999999999999988764 4456677788888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863222334556777888899999999999999887 3334 567788889999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...+++..+..|.++..+..++..+...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888887778888889999999999999998887754
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=1.7e-09 Score=103.30 Aligned_cols=337 Identities=10% Similarity=0.065 Sum_probs=197.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
.||......|.+.+.++-|+.+|...++- ++.+..+|......--..| ..+.-..+|++... +..+.|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 47777788888888888888888887765 3455555555544433333 55555555555432 1333444444444
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH------------------------------
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF------------------------------ 137 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~------------------------------ 137 (475)
-..|+...|..++....+.. +-+...|...+..-.....++.|..++.+
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 44455555555555444432 11333444444444444455555555444
Q ss_pred ---HHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 138 ---IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 138 ---~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.++. ++.-.-.|-.+...+-+.++++.|...|..-.. | .+..|-.+...--+.|..-.|..+|++.+..+ +-
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 4443 222233444444444444455555444443322 1 33445555554455555555555555555443 33
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|...|...++.-.+.|+.+.|..+..+... ..+.+...|..-|-+..+.++-..+.+.+++. +.|+.+..++...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHH
Confidence 445555555555555666655555555554 34444455555555555555544444444443 33555666677778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEEC
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 358 (475)
....+++.|.+.|.+....+|++..+|..+...+...|.-++-.+++....... |..|..|..+.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 888899999999999999999999999999999999999999999998876643 55566666443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.7e-10 Score=103.69 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=209.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhccCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhc
Q 038542 51 LVHMYGSCEGGIELGRKVFDEMSE---R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVTVLSACTD 124 (475)
Q Consensus 51 li~~~~~~gg~~~~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~ 124 (475)
+..+|-... +.+++..-.+.... | +...-+....+.-.+.++++|+.+|+++.+...- -|..+|+.++-.-..
T Consensus 233 ~~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 444555555 66666655555443 2 2222233334455678999999999999886321 256788887765333
Q ss_pred cCChH-HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 038542 125 LGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVAL 200 (475)
Q Consensus 125 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 200 (475)
...+. .|..++. + -+--+.|+..+.+-|+-.++.++|...|++..+- -...|+.|..-|...++...|++-
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 1221111 1 1234567888899999999999999999987654 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCC
Q 038542 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIE 278 (475)
Q Consensus 201 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 278 (475)
++...+-. +-|-..|-.|.++|.-.+.+.-|+-+|++... -.+.|...|.+|.++|.+.+++++|.+.|.+. .-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999864 56778999999999999999999999999875 44557899999999999999999999999998 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIG-------NEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.+...+..|...+-+.++.++|.+.+++-++ .+|....+...|..-+.+.++|++|.......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3557888999999999999999999998765 23434445566888889999999998766443
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.40 E-value=2.5e-09 Score=102.19 Aligned_cols=323 Identities=15% Similarity=0.133 Sum_probs=269.9
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChh
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 94 (475)
++.....+.+.|+-++..+++. .+.+...|.+ |++.. .++.|.++++...+ .+...|.+-...=-.+|+.+
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLwlA----larLe-tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLWLA----LARLE-TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHH-HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 3445567777799999998887 3555555554 45556 88889999887765 48889988888888899999
Q ss_pred HHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHH
Q 038542 95 DAIDLFRQM----QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 95 ~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~ 168 (475)
...+++.+- ...|+..+...|..=..+|-..|..-.+..|....+..|+... -.+|+.-...+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888887654 5578999999999999999999999999999999998887643 4577778889999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 038542 169 LFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245 (475)
Q Consensus 169 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 245 (475)
+|....+ .+...|...+..--.+|..++-..+|++.... ++-....+......+-..|++..|..++...... .
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~ 614 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--N 614 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--C
Confidence 9987764 35678988888888899999999999999886 4455566666677778889999999999998873 3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
+-+...|-+-+........+++|..+|.+. ...|+..+|..-+......++.++|.+++++.++..|+-...|..+..+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 346788999999999999999999999998 6778999999988888999999999999999999999999999999999
Q ss_pred HHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 325 YAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
+-+.++.+.|.+.+ ..|+++.|.+.
T Consensus 695 ~e~~~~ie~aR~aY----~~G~k~cP~~i 719 (913)
T KOG0495|consen 695 EEQMENIEMAREAY----LQGTKKCPNSI 719 (913)
T ss_pred HHHHHHHHHHHHHH----HhccccCCCCc
Confidence 99999999999988 67888887754
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.7e-10 Score=99.17 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=214.6
Q ss_pred CHHHHHHHHhccCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHHH
Q 038542 61 GIELGRKVFDEMSERDSV---SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE------ITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a 131 (475)
+.++|.++|-+|.+-|.. +.-+|.+.|.+.|..+.|+++.+.+.++ ||. .....+..-|...|-++.|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 899999999999876554 4557889999999999999999998874 442 2333455668899999999
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHHHHcCChHHHHHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV--------SWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+-+.. -|--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 224456778999999999999999998877644332 344455566667899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPI 282 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 282 (475)
..+.+ +.....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 98864 223334445677888999999999999999885 55555678888999999999999999999887 4445555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-H--hccChhHHHHHHHHHHhCCCccCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-A--KLLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
.-..+-..-....-.+.|...+.+-+...|.- ..+..|+..- . .-|++.+..-+++.|....++..|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 55556665566677788888888888888864 4455555543 2 3456888888899998776665554
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=6.9e-11 Score=116.20 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=168.8
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|+..|+.||.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++.+..+.+ +.+.+. +|...||
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EPLADTY 86 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CCchhHH
Confidence 356799999999999999999999999998 9999998888999999999999998888 877665 7889999
Q ss_pred HHHHHHHHHcCChhHHHHHHHH-HHH-------CCCCCCHHHHHHHHHHHhccC-Ch------HHHHHHHHHHHHcCC-C
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQ-MQI-------SGVCPDEITMVTVLSACTDLG-AL------EVGKWVESFIEKQMV-N 144 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~~~-~ 144 (475)
..|..+|.+.|+... ++..++ |.. .|+..-..-+-..+..|-..- +. .--+.+++..++.+. .
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998765 222222 221 222111111111111111100 00 001122222222220 1
Q ss_pred CCccHHH-H--HHHHHHh-cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 145 RSVGLCN-A--LIDMFAK-CGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 145 ~~~~~~~-~--li~~y~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
|...-++ . .++-... ...+++-...-.... .++..+|.+.+..-...|+.+.|..++.+|.+.|++.+..-|..|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1111011 0 1111111 122333333333333 378899999999999999999999999999999999999888888
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (475)
+-+ .++...+..++..|... |+.|+.+|+.-.+-.+...|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 866 78888889999999885 999999999887776666554
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=2e-09 Score=97.41 Aligned_cols=274 Identities=12% Similarity=0.101 Sum_probs=194.1
Q ss_pred CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 60 GGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 60 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
|++..|+++..+-.+ ..+..|..-..+--+.|+.+.+-.++.+.-+..-.++.....+........|+++.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 488888888877554 23445555566667778888888888887764223444455555566778888888888888
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-----------VSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
.+.+.+. -++.+......+|.+.|++.....++.++.+... .+|+.++.-....+..+.-...|+..-
T Consensus 178 ~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 8877753 3666777888888888888888888888875422 467777766665555555455555543
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 038542 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANP 281 (475)
Q Consensus 206 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~ 281 (475)
.. .+-+...-.+++.-+...|+.++|.++..+..+. +..|+. +..-...+.++...-.+..+.- |. ++
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 33 3445555667777788888888888888887775 666651 1112233445544444443333 44 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+.+|...|.+++.+.+|...|+..++..|. ...|..+..++.+.|+..+|.+++++-..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 78899999999999999999999999998885 57899999999999999999999988764
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=5.5e-09 Score=94.64 Aligned_cols=279 Identities=11% Similarity=-0.030 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChhHHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER----DSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
.|++.+|+.......+.+-.| ...|..-..+--+.| +.+.|-.++.+..++ +...+-+........|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrg-d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRG-DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcc-cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 589999999998877765322 233333444455667 999999999988764 45566777888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-------cHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 99 LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-------GLCNALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 99 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 171 (475)
-.+++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++=....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998865 335677888999999999999999999999999876553 356667666666666666666787
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 038542 172 SMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248 (475)
Q Consensus 172 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 248 (475)
..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+-.+.+.++.+.-.+..+...+.++..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 7763 36777778888999999999999999999998777762 233456778888888888888877555555
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
..+..|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+..+|.++.++.+-.
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67889999999999999999999987 88899999999999999999999999999987643
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.2e-12 Score=84.27 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.3e-09 Score=100.77 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=166.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|+.-.+.+-++..++.... +...|--+..+|....+-++....|++..+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 35555566666666665433 333466677788888888888888887653 35667777777777788899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN 280 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 280 (475)
++..... +-+...|..+..+..+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988853 33456777777777889999999999999998 67777889999999999999999999999987 33332
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 281 ---------PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 281 ---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+.+-..++..- -.+++..|..+++++.+.+|....+|..|...-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22333333332 34899999999999999999999999999999999999999999998764
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.4e-12 Score=84.07 Aligned_cols=50 Identities=28% Similarity=0.591 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=3.7e-10 Score=109.05 Aligned_cols=232 Identities=17% Similarity=0.177 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCCcc-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQ-----MV-NRSVG-LCNALIDMFAKCGDVDKALKLFRSMNG-------R- 176 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 176 (475)
..++..+...|...|+++.|..++.+.++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446677888899999999999999988754 21 12222 234467889999999999999988742 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 038542 177 ---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-----GV-PPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246 (475)
Q Consensus 177 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 246 (475)
-..+++.|..+|.+.|++++|..++++..+- |. .|.. .-++.+...|...+.+++|..++....+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2367888889999999999999888876531 21 2232 246667778999999999999998776544322
Q ss_pred C------ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 038542 247 P------KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEA-NPIIWRTLISACCARGELKLAESITKRLIG- 309 (475)
Q Consensus 247 p------~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 309 (475)
| -..+++.|...|...|++++|+++++++ +..+ ....++.|..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2367999999999999999999999987 2222 245677788999999999999999988653
Q ss_pred ---CCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 310 ---NEPMH---ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 310 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+|.. ..+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444 45788999999999999999999988864
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.33 E-value=3.2e-09 Score=105.92 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=113.3
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-------TI-------VSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+-++.+.+.|.+...+...|++++|...|...... |. .-|| +...+-..++.+.|.+.|.....
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHH
Confidence 333455556666666666666666666666654321 11 1122 33333444555566666665555
Q ss_pred cCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 038542 207 AGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANP 281 (475)
Q Consensus 207 ~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~ 281 (475)
. .|.-+ .|..++..-...+...+|...++.... ....++..++.+...+.+...+..|.+-|..+ ...+|+
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 3 23322 233333222233555666666666654 44445555555555666666666666544333 333566
Q ss_pred HHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 282 IIWRTLISACCA------------RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 282 ~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
.+.-+|.+.|.. .+..+.|.++|.+++..+|.|..+-+-+.-+++..|+|.+|..+|.+.++...
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 655555554432 23456777777777777787776667777777778888888888877777554
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1.8e-09 Score=108.95 Aligned_cols=257 Identities=14% Similarity=0.039 Sum_probs=185.4
Q ss_pred ChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 038542 76 DSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPD-EITMVTVLSACT---------DLGALEVGKWVESFIEK 140 (475)
Q Consensus 76 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 140 (475)
+...|...+.+-... +..++|+++|++..+. .|+ ...+..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 555666666664221 3457899999999875 565 445544444333 23457899999999988
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-VAF 216 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 216 (475)
.. +.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 75 33677888888999999999999999998753 3 45678888999999999999999999998864 442 233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCA 293 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~ 293 (475)
..++..+...|++++|...+++..+. . .| ++..+..+..+|...|++++|...++++ +..|+ ...++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34454566689999999999988763 2 34 4556777888899999999999999987 44454 4445556666677
Q ss_pred cCCHHHHHHHHHHHHhCC---CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 294 RGELKLAESITKRLIGNE---PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.| +.|...++++.+.. |.++ ..+...|+-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47888788776543 4433 3366677778888877766 7777654
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.8e-09 Score=93.69 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-CCh------hHHHHHHHHHHHcCChhH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-RDS------VSWSAMIGGYARLGLSTD 95 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~ 95 (475)
.+..++|...|-+|.+.. +.+..+.-+|.+.|-+.| .+|.|.++.+.+.+ ||. ...-.|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRG-EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999853 455566778888888888 99999999998875 332 245567788999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 96 AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 96 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~ 171 (475)
|..+|..+.+.| .--......++..|-...+|++|..+-..+.+.+-++.. ..|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998764 334567788999999999999999999999988755442 346667777777889999999999
Q ss_pred hcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 038542 172 SMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248 (475)
Q Consensus 172 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 248 (475)
+..+.| +..--.+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+. .++
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g 281 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTG 281 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCC
Confidence 876543 34444456778899999999999999999764434567788899999999999999999988864 344
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEF-IQKMPIEANPIIWRTLISACCAR---GELKLAESITKRLIG 309 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 309 (475)
...-..+.+.-....-.+.|... .+.+.-+|+...+..|+..-..- |...+....++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444455544444445555554 45557789999999999876543 334555556666654
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6e-09 Score=104.05 Aligned_cols=311 Identities=16% Similarity=0.129 Sum_probs=172.8
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD------SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI--TM 115 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~ 115 (475)
++.+.+.|.+.|.-.| +++.++.+...+...+ ..+|.-+.++|-..|++++|...|.+.... .||.+ .+
T Consensus 269 nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 3344444444444444 5555555554443321 224555556666666666666665555443 23332 22
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG----DVDKALKLFRSMNGR---TIVSWTSVIAGL 188 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~ 188 (475)
..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+...+ |...|-.+...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334455555666666666666555542 334444455555555443 344455555444432 344554444443
Q ss_pred HHcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCC------hhHHHHHH
Q 038542 189 AMHGRGLEAVALFEEML----EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG--IIPK------IEHYGCMV 256 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~------~~~~~~li 256 (475)
-+ ++...++..|.... ..+..+.....|.+...+...|+++.|...|........ ..++ ..+-..+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33 33333355554432 334445556666666666777777777777766654210 1111 11223344
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
.++-..++++.|.+.|..+ ...|+ +..|.-++......++..+|...++.++..+..++.++..+.+.|.+...|..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 5555566677777777666 33343 223333333333457788899999999988888888999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCccEEEECC
Q 038542 335 TKIREVMDKRGMKKIPGSTLIELDN 359 (475)
Q Consensus 335 ~~~~~~m~~~~~~~~~~~s~~~~~~ 359 (475)
.+-|+...++-...+...|.+.+.+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhH
Confidence 9988887776555544455555544
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.4e-09 Score=99.82 Aligned_cols=263 Identities=10% Similarity=-0.039 Sum_probs=210.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
|+...-....-+...+++++..++++...+. .+++...+..-|..+...|+-.+-..+-..+++. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3444445556677889999999999999876 3667777777777888888877777776777776 4557788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
-|.-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999876443 478999999999999999999998887664 122222233455668889999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--------PIEA-NPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.++|.+... -.+.|+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|++.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998874 33445667777777777788999999999876 1111 456789999999999999999999
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+++.+.+.|.+..+|.+++-+|...|+++.|...|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=3.1e-09 Score=94.87 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
...+..+...|...|++++|.+.+++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 2233444455555555566666666665555543 2233344445555
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 157 FAKCGDVDKALKLFRSMNGR-----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
|...|++++|.+.|++.... ....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554321 12233334444445555555555555544432 1223344444444444555555
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
|..+++..... .+.+...+..+...+...|+.++|..+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55554444431 122233333333444444444444443
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-08 Score=94.03 Aligned_cols=182 Identities=11% Similarity=0.052 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 159 KCGDVDKALKLFRSMNGRTIVSWTSVI---AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
..|++++|.+.+++....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 346777777777777766654433332 2355678888888888776543 334566667777888888888888888
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+.+... -++.|+...+-|.+.|-+.|+-..|.+..-.- ..-| +..+..-|..-|....-++.++.+|+++.-+.|.
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 877764 56677888999999999999999988865443 3333 6667666777788888899999999999888886
Q ss_pred CCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...-...+..++.+.|++.+|..+++....
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 544444555667788999999999988764
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=9.2e-08 Score=88.48 Aligned_cols=315 Identities=11% Similarity=0.130 Sum_probs=191.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChhHHHHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLF 100 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 100 (475)
.|++..|+++|+.-..- .|+...|++.|+.-.+.. .++.|+.++++.. .|++.+|--....=-+.|+...|..+|
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35555555555554433 455555555555555555 5555555555543 355555555555555555555555555
Q ss_pred HHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHH----
Q 038542 101 RQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALKLF---- 170 (475)
Q Consensus 101 ~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~---- 170 (475)
....+. -.|.. .|.+...-=.+...++.|..++...+.. ++.+ ...|..+...=-+-|+.....++.
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 554432 11111 1222222222344455555555555543 1212 223333333333334433222221
Q ss_pred ----HhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hcCCCHHHHH
Q 038542 171 ----RSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-------VAFVGLLSAC---SHCGLVDKGR 233 (475)
Q Consensus 171 ----~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~ 233 (475)
+.+... |-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 112222 4456777777777788999999999988876 55532 1222221122 3467888888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLC----RSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
++++...+ -++-..+|+.-+--+|+ ++.++..|.+++... |.-|-..++...|..-.+.+++|....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888876 45555667766655554 678888999988877 888888899988988889999999999999999
Q ss_pred hCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 309 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
+.+|.+..+|.-....-...|+++.|..+|+....+..
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999888888888888889999999999988876554
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=4.5e-09 Score=106.15 Aligned_cols=227 Identities=12% Similarity=-0.013 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 038542 111 DEITMVTVLSACT-----DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK---------CGDVDKALKLFRSMNG- 175 (475)
Q Consensus 111 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~- 175 (475)
+...|...+.+-. ..+++++|...+++.++... .+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4555656666532 23456889999999987642 244556666655542 3458899999998764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHH
Q 038542 176 --RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHY 252 (475)
Q Consensus 176 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 252 (475)
.+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 366788888889999999999999999999864 444667888889999999999999999998863 4442 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM--PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
..+...+...|++++|...+++. ...| ++..+..+..++...|+.++|...++++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455577789999999999887 2235 45557778888889999999999999988888877777778888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 038542 330 RWEKKTKIREVMDKR 344 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~ 344 (475)
++|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4888877777653
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.5e-09 Score=93.20 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=187.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcC
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHG 192 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 192 (475)
+.+.+.|.+.|-+.+|+..++...+. .|.+.+|..|-..|.+..+.+.|+.+|.+-.+. |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45777889999999999999988876 456667888889999999999999999887643 4444445667788889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 272 (475)
+.++|.++++...+.. +.+......+...|...++++-|+.+++.+..- |+ .+++.|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998863 455667777788888999999999999999983 65 46778888888888899999999888
Q ss_pred HhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 273 QKM---PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 273 ~~m---~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++. ...| -..+|..|.......|++..|.+.|+-.+..+|++..+++.|.-.-.+.|+.++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 877 2223 35689999999999999999999999999999999999999999999999999999999877653
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.16 E-value=1.3e-07 Score=94.12 Aligned_cols=335 Identities=15% Similarity=0.067 Sum_probs=244.7
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMI 84 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li 84 (475)
-+...|.+|...|-..|+.+++.+.+-.+.... +.|...|-.+.+...+.| .++.|.-.|.+..+. +....---+
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG-NINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 355789999999999999999988775555443 667789999999988988 999999999998764 333444456
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHh
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEIT----MVTVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~ 159 (475)
..|-+.|+...|++-|.++.+...+.|..- .-.++..+...++-+.|.+.+...... +-..+...++.++.+|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 788999999999999999998643223222 233455566677778888888776652 233466678899999999
Q ss_pred cCCHHHHHHHHHhcCC----CCh----------------------hHHH----HHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 160 CGDVDKALKLFRSMNG----RTI----------------------VSWT----SVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
...++.|......+.. +|. .+|+ -+.-++...+..+....+.....+..+
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 9999999887765543 111 1111 122334444444445555555555554
Q ss_pred CC--CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038542 210 PP--DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWR 285 (475)
Q Consensus 210 ~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 285 (475)
.| +...|.-+..++.+.|++.+|..+|..+... ...-+...|-.+..+|...|..++|.+.|+.. ...| +...--
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 44 4567888999999999999999999999974 33445778999999999999999999999988 4455 455556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 286 TLISACCARGELKLAESITKRLIGNEP---------MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|-..+.+.|+.++|.+.+..+..-++ +...........|...|+.++-..+-..|....
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 677788999999999999998763332 223344567788899999988877777776544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=5.6e-09 Score=91.92 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=193.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-++|.+..+...|..++.+-++. ++.++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999988875 677888989999999999999999999988876 455666666778889999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 161 GDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 161 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
++.++|.++++...+ .++.+..++..+|.-.++++-|+..++++.+.|+ .+...|..+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998764 3666777777888899999999999999999995 577889999999999999999999888
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 238 SMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 238 ~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
..... --.|+ ...|..+.......|++.-|.+.|+-. ....+...++.|...-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 87763 33343 357778888888899999999999887 32336788999998889999999999999999988875
Q ss_pred C
Q 038542 314 H 314 (475)
Q Consensus 314 ~ 314 (475)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 3
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.4e-07 Score=84.36 Aligned_cols=305 Identities=10% Similarity=-0.033 Sum_probs=215.4
Q ss_pred CCCCcchHHHHHHHHHc--CCCcHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhH---
Q 038542 6 VSPNKFTYPFVLKACAG--IGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS--- 79 (475)
Q Consensus 6 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~--- 79 (475)
++|+-.+....+.+++. .++...+.+.+-.+... -++.|+.....+.+.|...| +.+.|...|++...-|+.+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhh
Confidence 44555555555555443 35555555655555443 35777888889999999998 9999999998876543333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
.....-.+.+.|+.++...+...+.... .-+...|..-+...-..++++.|..+-++.++... -+...+-.-.+++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2233445567888888888888776531 22333343444445567788888888877776532 244455555577888
Q ss_pred cCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cCCCHHHHHH
Q 038542 160 CGDVDKALKLFRSMN--G-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL-SACS-HCGLVDKGRE 234 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~ 234 (475)
.|+.++|.-.|+... . -+..+|.-|+..|...|++.+|.-+-+..... ++.+..+...+. ..|. ....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 899999998888654 3 37789999999999999999998877766554 455666665552 3333 3344577888
Q ss_pred HHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 235 YFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
+++.-. .+.|+- ...+.+...+.+.|..+++..++++. ...||....+.|.+.+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 887765 345653 45566777888999999999999887 6678999999999999999999999999999999999
Q ss_pred CCCch
Q 038542 313 MHESN 317 (475)
Q Consensus 313 ~~~~~ 317 (475)
.+..+
T Consensus 503 ~~~~s 507 (564)
T KOG1174|consen 503 KSKRT 507 (564)
T ss_pred cchHH
Confidence 87543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=2e-08 Score=97.21 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHc-----CC--C
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQIS-----GV-CPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQ-----MV--N 144 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 144 (475)
+...+...|...|+++.|+.++....+. |. .|...+ ...+...|...+.+++|..+|+.+... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5555899999999999999999988764 21 233333 334666788999999999999988743 21 1
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNG----------RTI-VSWTSVIAGLAMHGRGLEAVALFEEMLEA---GVP 210 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 210 (475)
.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234566677789999999998887765431 122 34667788899999999999999876542 122
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc----C-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 038542 211 PD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDF----G-IIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM----- 275 (475)
Q Consensus 211 p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 275 (475)
++ ..+++.|...|.+.|++++|.++|++..... + ..+ ....++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999887542 1 122 2456788889999999999999988876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 276 ---PIEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 276 ---~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+..|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33454 5689999999999999999999999876
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=7.9e-08 Score=89.02 Aligned_cols=216 Identities=14% Similarity=0.017 Sum_probs=137.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 91 GLSTDAIDLFRQMQISG-VCPD--EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
+..+.++.-+.++.... +.|+ ...|..+...+...|+.++|...+...++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666432 1222 2345555566777777888877777777764 335677788888888888888888
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 168 KLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 168 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877643 2 4567777777888888888888888888774 34432222222234456778888888866554 3
Q ss_pred CCCChhHHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKE--AHEFIQKM-PI----EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|+...+ .+... ..|+..+ +.+.+.+. .. .| ....|..+...+...|++++|...|+++.+.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33333222 22222 3444433 23222221 11 11 34578889999999999999999999999998754
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.5e-07 Score=87.50 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=127.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (475)
-.|+.-.|...|+........++. .|..+...|....+.++.++.|+...+ --+.++.+|..-..++.-.+++++|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 357788888888888876533333 377788889999999999999999885 33446677888888888889999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 270 EFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 270 ~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.-|++. .+.| +...|-.+.-+..+.++++++...|++.++..|..+..|+....++...+++++|.+.++...+.
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999998 6677 56777777777788899999999999999999999999999999999999999999999988653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=2.9e-08 Score=91.87 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=152.5
Q ss_pred CChHHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 038542 126 GALEVGKWVESFIEKQM-VNR--SVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666676676432 222 235677888899999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PI 277 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 277 (475)
.|++..+.. +-+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+. ..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999853 234677888888999999999999999998863 444322222223345678899999999765 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLI-------GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|+...| .......|+...+ +.++.+. +..|....+|..++..|...|++++|...|++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 2223335555444 3444444 3345566789999999999999999999999988654
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=6.6e-08 Score=81.46 Aligned_cols=163 Identities=18% Similarity=0.156 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+ --+-+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 4456677888888888888888888863 34456788888888888999999888888775 22334577788888888
Q ss_pred HcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 261 RSGRVKEAHEFIQKM---PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
..|++++|...|++. |.-| -..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.+...+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 889999999998887 2222 356788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 038542 337 IREVMDKRGM 346 (475)
Q Consensus 337 ~~~~m~~~~~ 346 (475)
.++.....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9988876653
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.1e-07 Score=86.16 Aligned_cols=277 Identities=13% Similarity=0.029 Sum_probs=211.2
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 118 (475)
..++.+.....+-+-..+ ++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.+|... .+-.+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGC-RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 344455555666666667 899999999988764 4556677788999999999888888888875 24457799888
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH
Q 038542 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 195 (475)
.--|...|..++|++.+.+....... -...|-.+...|+-.|.-|.|...+....+ ..-..+--+.--|.+.+..+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 88888889999999999988765422 345788899999999999999887765432 11122222445688899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CC---C-CChhHHHHHHHHHHHcCCHHHHHH
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GI---I-PKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
-|.+.|.+...- .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|..
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999988774 24456677777766677899999999998876310 01 1 144568889999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
.++.. ...| +..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99988 3333 7889999999999999999999999999999998855444443
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=1.6e-06 Score=85.21 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=160.9
Q ss_pred HHHhCCCCHHHHHHHHhccCC--CChh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c-----
Q 038542 54 MYGSCEGGIELGRKVFDEMSE--RDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT-D----- 124 (475)
Q Consensus 54 ~~~~~gg~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~----- 124 (475)
.+...| ++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+...+ |+...|-..+..+. -
T Consensus 13 il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555 77777777766443 2333 33445566677777777777777777653 44444443333332 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH-HHHHHHHhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD-KALKLFRSMNGRTI-VSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
..+.+....+++.+.+.- |.......+.-.+.....+. .+...+..+..+++ .+|+.+-..|....+..-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666665442 22111211211111111122 23333344444444 345555555554444444444444
Q ss_pred HHHHc----C----------CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCH
Q 038542 203 EMLEA----G----------VPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRV 265 (475)
Q Consensus 203 ~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 265 (475)
..... + -+|.. .++..+...|...|+.++|+.+++.... . .|+ ++.|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--h-tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--H-TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c-CCCcHHHHHHHHHHHHHCCCH
Confidence 44321 1 12333 3556667778888888888888887775 2 344 67788888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCc-----hH--HHHHHHHHhccChhHH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE--PMHES-----NY--VLLSHIYAKLLRWEKK 334 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~-----~~--~~l~~~~~~~g~~~~a 334 (475)
.+|.+.++.. ...+ |..+=+.....+.+.|++++|.+.+......+ |...- .| .-.+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888777 3333 55555666777788888888888888776554 22100 12 3456778888888888
Q ss_pred HHHHHHHHh
Q 038542 335 TKIREVMDK 343 (475)
Q Consensus 335 ~~~~~~m~~ 343 (475)
.+-+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 877666543
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.3e-06 Score=77.72 Aligned_cols=332 Identities=11% Similarity=0.088 Sum_probs=249.9
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC------Chh
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER------DSV 78 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~------~~~ 78 (475)
...|+...|.+.++-=.+-..++.|+.+++..+-. .|++..|-.-...--++| .+..|+.+|+...+. +..
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHH
Confidence 35799999999999989999999999999998865 699999998888888998 999999999887642 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCh---HHHHH-----HHHHHHHcCCCCCcc
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTDLGAL---EVGKW-----VESFIEKQMVNRSVG 148 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~---~~a~~-----~~~~~~~~~~~~~~~ 148 (475)
.+++....=.++..++.|.-+|.-.... ++-+ ...|.....-=-+-|+. +.+.- -++.+++. -+.|-.
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYD 323 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCch
Confidence 5555555556678889999999888765 3333 33444444443344443 33321 12333333 244666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHH--------HHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR--TI---VSWTSVI--------AGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~---~~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 215 (475)
+|--.++.-...|+.+...++|++.... .. ..|.--| -.-....+.+.+.++|+...+. ++-..+|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 7777788888889999999999987532 11 2222222 1223568899999999999884 4555678
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038542 216 FVGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLIS 289 (475)
Q Consensus 216 ~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 289 (475)
|..+=-.|+ +..++..|.+++.... |.-|...++...|..=.+.+.++.+.+++++. ...| |..+|.....
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 876544443 5788999999998876 88999999999999999999999999999987 5666 7889999988
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 290 ACCARGELKLAESITKRLIGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.-...|+.+.|..+|+-++.....+ ...+...+..-...|.++.|..+++.+.+..
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8889999999999999988765322 2345666666678999999999999998754
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.3e-06 Score=78.13 Aligned_cols=262 Identities=13% Similarity=0.011 Sum_probs=187.2
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHH
Q 038542 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153 (475)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (475)
.|+....++...+...|+.++|+..|++.+.. .|+..+ ...-.-.+.+.|+++....+...+.... +.+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 37888889999999999999999999988763 444332 2222223456778887777766665432 1122222222
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
........+++.|+.+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+... +-+...|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 3334456778888888887654 355555555567788899999999999988742 346789999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMV-DMLCR-SGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
+|...-+...+ -+..+..+.+.+. ..+.- ...-++|.+++++. .++|+ ....+.+...|..-|..+.++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99887777665 3444555555442 23322 22347788898887 67775 45567777888889999999999999
Q ss_pred HHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 307 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...|+. ...+.|...+.....+.+|...|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99988864 6788999999999999999998876654
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.94 E-value=6.9e-07 Score=87.69 Aligned_cols=257 Identities=13% Similarity=0.067 Sum_probs=183.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc--
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-- 160 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-- 160 (475)
...+...|++++|++.+..-... .+|..+ +......+.+.|+.++|..++..+++.+. .+...|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 45668899999999999876543 556554 45666778999999999999999999863 3666666676666332
Q ss_pred ---CCHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 038542 161 ---GDVDKALKLFRSMNGRTI--VSWTSVIAGLAMHGRG-LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234 (475)
Q Consensus 161 ---g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 234 (475)
.+.+...++|+++..... .+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 256777788887754321 1111111112221223 24556677778888653 56667667776666666666
Q ss_pred HHHHhhhhc-------------CCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 038542 235 YFDSMKNDF-------------GIIPKI--EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGEL 297 (475)
Q Consensus 235 ~~~~m~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~ 297 (475)
++....... .-+|+. .++.-+...|-..|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 666654321 113444 34566678899999999999999987 56675 66788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++....+.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999999988866666677788999999999999999987775
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=6.6e-06 Score=78.79 Aligned_cols=259 Identities=13% Similarity=-0.020 Sum_probs=137.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCChHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHh
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT---VLSACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAK 159 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~ 159 (475)
...+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.+.. .....|+ ......+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 344556677777777777766542 223323321 11111123334444444333 1111222 2233345556677
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCCHHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDD--VAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~ 233 (475)
.|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777776543 2445666667777777777777777777665421 1222 23445666777777787777
Q ss_pred HHHHHhhhhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHY-G--CMVDMLCRSGRVKEAHEF---IQKM----PIEANPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.+++.........+..... + .++..+...|..+.+.++ .... +.............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 7777765321111111111 1 222333333432222222 1111 1111122223456667788889999998
Q ss_pred HHHHHhCC-C--------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 304 TKRLIGNE-P--------MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 304 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
++.+.... . ...........++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88876432 1 123344566667789999999999998877644
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=5.3e-08 Score=88.96 Aligned_cols=242 Identities=14% Similarity=0.057 Sum_probs=104.4
Q ss_pred CHHHHHHHHhccCC-C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSE-R--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137 (475)
Q Consensus 61 ~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 137 (475)
++..+..-.+.-.. + +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..-+..
T Consensus 16 ~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~ 91 (290)
T PF04733_consen 16 NYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKE 91 (290)
T ss_dssp -HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHH
T ss_pred hHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 66666644431111 1 2334445566666666655433 3333222 45554444444333332333333222222
Q ss_pred HHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038542 138 IEKQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216 (475)
Q Consensus 138 ~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 216 (475)
....... .+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|. +.
T Consensus 92 ~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l 166 (290)
T PF04733_consen 92 LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-IL 166 (290)
T ss_dssp CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HH
T ss_pred HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HH
Confidence 2211111 12222222234455566666666666554 34455555566666666666666666666553 2232 22
Q ss_pred HHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 217 VGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 217 ~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
..+..++. ....+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++..
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 23333322 12345556666655544 23344444555555555555555555554443 2222 33344444444
Q ss_pred HHhcCCH-HHHHHHHHHHHhCCCC
Q 038542 291 CCARGEL-KLAESITKRLIGNEPM 313 (475)
Q Consensus 291 ~~~~g~~-~~a~~~~~~~~~~~p~ 313 (475)
....|+. +.+.+.+.++....|.
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHhCCChhHHHHHHHHHHHhCCC
Confidence 4444444 3344444444444443
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=5.5e-08 Score=92.25 Aligned_cols=219 Identities=11% Similarity=0.026 Sum_probs=175.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 198 (475)
+.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+++..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999888875 347788888888888888888888888887643 5677777888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 199 ALFEEMLEAGVP--------PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 199 ~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
+.|+.-.....+ ++..+-.. ..+.....+....++|-.+....+..+|+..+.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988654211 00000000 12223334455666777776655767888999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.|+.+ .++| |..+||-|...++...+..+|+..+.+++++.|.-..+...|.-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 7778 7889999999999999999999999999999999999999999999999999999998876654
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.5e-07 Score=84.60 Aligned_cols=244 Identities=12% Similarity=0.066 Sum_probs=145.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
+-+.-.|++..++.-.+ .....-..+......+.+++...|.++.+ ...+.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44455677877776555 22221112233445566777777776543 23333332 555555555544443334556
Q ss_pred HHHHHHHhcC-CCC---hhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 165 KALKLFRSMN-GRT---IVSWTS-VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 165 ~A~~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
.+..-+++.. ++. -.++.. ....+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555443 221 112222 223355568888888877642 34555666777888888888888888888
Q ss_pred hhhcCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 240 KNDFGIIPKIEHYGCMVDMLC----RSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.+ +..| .+...+..++. -...+.+|..+|+++ ...+++.+.+.+..++...|++++|.+++++..+.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 2333 33334444433 234678888888888 44467778888888888888888888888888888888
Q ss_pred CCchHHHHHHHHHhccCh-hHHHHHHHHHHh
Q 038542 314 HESNYVLLSHIYAKLLRW-EKKTKIREVMDK 343 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 343 (475)
++.+...++-+....|+. +.+.+.+.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888877 556677777665
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1e-06 Score=91.53 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=171.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGR--------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
....|-..|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+.- -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4557888888899999999999999987532 23678888888888898889999999998852 2245688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPIIWRTLISACCA 293 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~ 293 (475)
.|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-+.|..++.++ |-+-........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999766 67788999999999999999999999887 333356666677777789
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999888654
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=3.3e-06 Score=71.44 Aligned_cols=188 Identities=13% Similarity=0.050 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 158 (475)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++... -+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 45567778888888888888888887752 22455777777778888888888888888877643 35566777777777
Q ss_pred hcCCHHHHHHHHHhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 159 KCGDVDKALKLFRSMN-GR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
..|++++|...|++.. .| -..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777654 33 22566666666667777777777777776653 333445566666666677777777
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
.+++.... +..++..+.-..|..-.+.|+-+.+.+.
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77666665 2335555555555555555655555443
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.82 E-value=2.7e-05 Score=75.21 Aligned_cols=155 Identities=9% Similarity=-0.003 Sum_probs=89.6
Q ss_pred HHHcCCCcHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHH
Q 038542 19 ACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97 (475)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 97 (475)
...++|++...+..|+..+.. .+.....+|...+......+ -++.+.+++++-.+-++..-+.-|..++..+++++|-
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 334556666666666665543 12223345666666555555 6777777777776666666677777777788888777
Q ss_pred HHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHH---HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 038542 98 DLFRQMQISG------VCPDEITMVTVLSACTDLGALEVGK---WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 98 ~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 168 (475)
+.+....... .+.+...|..+....++..+.-... .++...+..-.+.-...|++|.+-|.+.|.+++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 7777665421 1333444555555444443333222 222222222111123467888888888888888888
Q ss_pred HHHhcC
Q 038542 169 LFRSMN 174 (475)
Q Consensus 169 ~~~~~~ 174 (475)
+|++..
T Consensus 270 vyeeai 275 (835)
T KOG2047|consen 270 VYEEAI 275 (835)
T ss_pred HHHHHH
Confidence 877543
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=2e-05 Score=77.75 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
.....+...+..++|...+.+..+ ........|......+...|.+++|.+.|... .+.| ++.+..++...+...|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344556667777777776666654 33445566777777888899999999988877 6667 5778889999999999
Q ss_pred CHHHHHH--HHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 296 ELKLAES--ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 296 ~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+...|.. ++..+.+.+|.++..|..|..++-+.|+.++|.+-|....+..
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9888888 9999999999999999999999999999999999998887644
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2.4e-05 Score=70.21 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=84.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IE-ANPIIWRTLI-SACCARGE 296 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~li-~~~~~~g~ 296 (475)
..++.-..++++.+-+++.+.. |-...|.+.+| +..+++..|.+.+|+++|-.+. .+ .|..+|.+++ ..|...+.
T Consensus 366 As~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 3333444578899999998887 34445555544 6889999999999999998872 11 3666776655 56677888
Q ss_pred HHHHHHHHHHHHhCC-CCCC-chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 297 LKLAESITKRLIGNE-PMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
++.|..++ ++.+ |.+. .....+.+.|.+++.+--|.+.|+.+...+
T Consensus 444 P~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 444 PQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred chHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 88876655 4444 3322 234456678889999999999999887654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=6.4e-05 Score=71.97 Aligned_cols=293 Identities=10% Similarity=0.035 Sum_probs=177.1
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CCChhHHHHH-HHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTL-VHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGG 86 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l-i~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~ 86 (475)
.|..+...+...|+.+.+...+....+... .++..-...+ ...+...| ++++|.+.+++..+ | |...++. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 445555566666778877666666555421 2222222222 22344556 99999999887653 3 4445553 223
Q ss_pred HHH----cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 87 YAR----LGLSTDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 87 ~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 3455555555544 12233443 344455667889999999999999999875 445778888999999999
Q ss_pred CHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhcCCCHH
Q 038542 162 DVDKALKLFRSMNGR-----TI--VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAF-V--GLLSACSHCGLVD 230 (475)
Q Consensus 162 ~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~ 230 (475)
++++|...+++.... +. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999986532 22 3466788889999999999999999865322 1222221 1 2333334445444
Q ss_pred HHHHH--HHHhhhhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----HHHHHHH--HHHHhcC
Q 038542 231 KGREY--FDSMKNDFGII--PKIEHYGCMVDMLCRSGRVKEAHEFIQKMP--IEA---NP----IIWRTLI--SACCARG 295 (475)
Q Consensus 231 ~a~~~--~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~~~li--~~~~~~g 295 (475)
.+.++ +...... ... ...........++...|+.++|..+++.+. ... .. .+-..++ -++...|
T Consensus 243 ~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 243 VGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred hHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 33333 2111111 111 111222346667788999999999998871 111 11 1222233 3456889
Q ss_pred CHHHHHHHHHHHHhC
Q 038542 296 ELKLAESITKRLIGN 310 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~ 310 (475)
+.+.|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.9e-06 Score=75.38 Aligned_cols=315 Identities=13% Similarity=0.119 Sum_probs=182.5
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CChh
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RDSV 78 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~~~ 78 (475)
|.-.|+..-...+++++....+..++..|.+++..-.++. +.+..-.+.|...|-+.. ++..|-..++++.. |...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHH
Confidence 4456666666778888887888888888888877766653 335566667777777777 88888888888764 3222
Q ss_pred HHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 79 SWS-AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA--CTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 79 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
-|. --...+-+.+.+..|+++...|... |+...-..-+.+ .-+.+++..++.+.++.-..| +..+.+...-
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 222 1234555677888888888777642 332222222222 234556666666555543221 2333333444
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
...+.|+++.|.+-|+...+- ....||..+ +..+.|+.+.|+++..++.+.|++..+.. + .|..-+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceec
Confidence 455667777777777665432 335555433 34456677777777777766665422110 0 000000
Q ss_pred HHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 038542 232 GREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKMPI----EANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~li~~~~~~g~~~~a 300 (475)
+.. .+.+ | .|-. +.+|.-...+.+.|+++.|.+-+..||- ..|++|...+.-. -..+++-.+
T Consensus 223 giD-vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 223 GID-VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred cCc-hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 000 0000 0 0011 1223333345678888888888888832 2366776654322 123456666
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
.+-+.-+++.+|-.+.++..++-.|++..-++-|..++.+
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6667777788887778888888888888888888877643
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=6e-05 Score=67.53 Aligned_cols=289 Identities=11% Similarity=0.047 Sum_probs=185.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHH---HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI---GGYARLGLSTDAIDLFRQMQISGVCPDEITMV-TVLSACTDL 125 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 125 (475)
-|...+...| ++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=+.+..+ ++||-..-. .-...+.+.
T Consensus 43 ElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 3444444456 888888888877776666666654 567778888888888887776 467754321 122346778
Q ss_pred CChHHHHHHHHHHHHcCCCCC--ccH------------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRS--VGL------------CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGL 188 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 188 (475)
|.++.|..=|+.+++.....+ ..+ ....+..+.-.||...|+.....+.+ -|+..+..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 888888888888877643211 111 12233445566788888777776653 2666677777788
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH----HHHH---H-----
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH----YGCM---V----- 256 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---i----- 256 (475)
...|.+..|+.=++..-+.. ..+..++..+-..+...|+.+.++...++-. .+.||-.. |..| +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 88888888887777665542 3344555566667777788777777666655 33454322 1111 1
Q ss_pred -HHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 257 -DMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 257 -~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
....+.+++.++.+-.+.. ...|. ...+..+-..+...+++.+|++...++++.+|++..++.--..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123455666666555544 33443 1223344455667788888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhCC
Q 038542 330 RWEKKTKIREVMDKRG 345 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~~ 345 (475)
.+++|..-++...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8888888887776543
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.72 E-value=0.00017 Score=69.90 Aligned_cols=324 Identities=13% Similarity=0.189 Sum_probs=197.3
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC---------------CC------HHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---------------GG------IELGRKVF 69 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------------g~------~~~A~~~f 69 (475)
..|.+|.+-|.+.|.+++|..++++.++. ..++.-+..+.+.|+... |+ ++....-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 36889999999999999999999998876 344445555666664432 01 22223333
Q ss_pred hccCC---------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCh
Q 038542 70 DEMSE---------------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD------EITMVTVLSACTDLGAL 128 (475)
Q Consensus 70 ~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~ 128 (475)
+.+.. .++..|..-... ..|+..+-...|.+.... +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33321 144455544433 356777888888888764 3332 23567778888899999
Q ss_pred HHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CC------------------ChhHHHHH
Q 038542 129 EVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMN---GR------------------TIVSWTSV 184 (475)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~------------------~~~~~~~l 184 (475)
+.|+.+|++..+...+.- ..+|....++=.+..+++.|+++.+... .+ +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887654422 3456666677777788888888887643 11 22345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC----------------------------------CCHH-HHHHHHHHH---hcC
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGVP----------------------------------PDDV-AFVGLLSAC---SHC 226 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~~----------------------------------p~~~-t~~~ll~~~---~~~ 226 (475)
+..--..|-++....+++++.+..+. |+.. .|+.-+.-+ ...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 55444556666666666665544322 2221 122222111 223
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH----HHcCCHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML----CRSGRVKEAHEFIQKM--PIEA--NPIIWRTLISACCARGELK 298 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m--~~~p--~~~~~~~li~~~~~~g~~~ 298 (475)
..++.|..+|++..+ |.+|... ..+--+| -+-|....|..++++. ++++ -...|+..|.--...=.+.
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 467788888888876 6665432 2222223 2457777788888877 3443 2356777776444433455
Q ss_pred HHHHHHHHHHhCCCCCCch--HHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 299 LAESITKRLIGNEPMHESN--YVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
....+++++++.-|++..- ..-...+-.+.|..+.|..++..-.+
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 5677788887776654332 23345566788999999999866544
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.3e-08 Score=57.96 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=26.9
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 142 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=3.9e-05 Score=83.17 Aligned_cols=295 Identities=15% Similarity=0.034 Sum_probs=186.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCC----C------C--hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----H
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSE----R------D--SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----I 113 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~----~------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 113 (475)
.....+...| ++++|..++....+ . . ......+...+...|++++|...+++....-...+. .
T Consensus 414 ~~a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3344445566 88888877765421 1 1 112223344566789999999999887763111122 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCC---C--CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----C
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVN---R--SVGLCNALIDMFAKCGDVDKALKLFRSMNG-------R----T 177 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~ 177 (475)
..+.+...+...|+++.|...+.......-. + .......+...+...|+++.|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3344455567789999999888877643211 1 123445567778889999999888776432 1 1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--VPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY- 252 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 252 (475)
...+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.++|...+.....-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1234445556777899999999988875531 1122 3344456667778999999999888875421111111111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCc
Q 038542 253 ----GCMVDMLCRSGRVKEAHEFIQKMPI-E-ANP----IIWRTLISACCARGELKLAESITKRLIGNE------PMHES 316 (475)
Q Consensus 253 ----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 316 (475)
...+..+...|+.+.|..++..... . ... ..+..+..++...|+.++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122445568899999999877621 1 111 124556677888999999999999987542 11223
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+...+..+|.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56778889999999999999999887644
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=3.1e-06 Score=75.85 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=114.6
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDD-VAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~ 217 (475)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566667777778888888887776643 2 11 35666777777788888888888887764311 111 1344
Q ss_pred HHHHHHhcC--------CCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038542 218 GLLSACSHC--------GLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288 (475)
Q Consensus 218 ~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 288 (475)
.+..++... |+.++|.+.++.+.+. .|+. ..+..+.... . ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHHHH-----------HHHHHHHH
Confidence 444455443 5677777777777653 2322 2222111110 0 00000 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMH---ESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..+...|+++.|...++++++..|.+ +..+..++.+|...|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67888999999999999999887654 467889999999999999999998887654
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.3e-05 Score=73.22 Aligned_cols=322 Identities=14% Similarity=0.083 Sum_probs=217.8
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChh
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD-SVSWSAMIGGYARLGLST 94 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~ 94 (475)
.+....|+++.|...|...+... ++|...|+.-...|++.| ++++|++--.+..+ |+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 35567799999999999988876 668888999999999998 99988876655544 32 457888888888899999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc------------------------------------------------
Q 038542 95 DAIDLFRQMQISGVCP-DEITMVTVLSACTDL------------------------------------------------ 125 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~------------------------------------------------ 125 (475)
+|+.-|.+-++. .| |...++.+..++...
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999887764 33 344445555444111
Q ss_pred CChHHHHHHHHHHHH--------c-------CCCC------------C----------ccHHHHHHHHHHhcCCHHHHHH
Q 038542 126 GALEVGKWVESFIEK--------Q-------MVNR------------S----------VGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~--------~-------~~~~------------~----------~~~~~~li~~y~~~g~~~~A~~ 168 (475)
.+.+...+.+..+.. . +..| + ..-...+.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000001111111110 0 0111 0 1125667788888888888888
Q ss_pred HHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 169 LFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-------AFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 169 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
-+.....- ++.-++....+|...|.+.+....-....+.|- -... .+..+..+|.+.++.+.|..+|...
T Consensus 246 ~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 246 HYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 87765533 444456666678887777776666666555442 1111 2222334566667788888887776
Q ss_pred hhhcCCCCChhHH-------------------------HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 240 KNDFGIIPKIEHY-------------------------GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 240 ~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
... ...|+...- ..-...+.+.|++..|.+.|.++ ...| |...|..-.-+|.
T Consensus 325 Lte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred hhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 654 333332211 11134467789999999999988 4445 7888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|.+-.+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988889888888888899999999998776543
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=0.00041 Score=68.81 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=129.3
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITM 115 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 115 (475)
.+.-|..+|..|.-...++| +++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45668888988888889998 99999999988764 2566899999999999999999999887665432243 3344
Q ss_pred HHHHHHHh-ccCChHHHHHHHHHHHHc--CC--CCCccHHHHHHHHHHhc----C-------CHHHHHHHHHhcCCC---
Q 038542 116 VTVLSACT-DLGALEVGKWVESFIEKQ--MV--NRSVGLCNALIDMFAKC----G-------DVDKALKLFRSMNGR--- 176 (475)
Q Consensus 116 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~y~~~----g-------~~~~A~~~~~~~~~~--- 176 (475)
-..-..|. +.+.++++..+-.++++. +. ......|..+.-+|... . ...++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 566777777776666652 11 11223344444444332 1 123455555555322
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
|...---+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.++..+++.+|+.+.+.....+|
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 22222223334666777778887777777765556666777676677777777777777766665544
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.5e-08 Score=57.39 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=18.0
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhcc
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~ 72 (475)
|+.||..+||+||++|++.| ++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G-~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAG-RVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCC-CHHHHHHHHHhC
Confidence 45555555555555555555 555555555555
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=0.00021 Score=64.17 Aligned_cols=256 Identities=12% Similarity=0.061 Sum_probs=183.5
Q ss_pred HHHHhCCCCHHHHHHHHhccCC--CChh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------H
Q 038542 53 HMYGSCEGGIELGRKVFDEMSE--RDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----------------I 113 (475)
Q Consensus 53 ~~~~~~gg~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 113 (475)
..|...| +...|+.-|++..+ ||-. .--.-...+.++|.+++|..=|+...+.. |+. .
T Consensus 80 T~yLAmG-ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 80 TVYLAMG-KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHhhhc-CCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHH
Confidence 3455566 66666666666554 3311 11222356789999999999999998763 321 1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHH
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM---NGRTIVSWTSVIAGLAM 190 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 190 (475)
.....+..+...|+...+......+++.. +.|...+..-..+|...|++.+|+.-++.. .+.+..++--+-..+..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 12234455667889999999999998874 458888999999999999999998776654 45567777777788889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVA----FVGL---------LSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHY 252 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---------l~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~ 252 (475)
.|+.+.++...++..+ +.||... |..| +......+++.++..-.+...+. .|. ...+
T Consensus 236 vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGF 310 (504)
T ss_pred hhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeee
Confidence 9999999999999888 4677532 2111 11223456677777666666542 333 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
..+-.++...|++.+|.+...+. .+.|| +.++.--..+|.....++.|+.-++.+.+.++++..+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 45666778889999999888777 66674 7888888889999999999999999999999887543
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=3.3e-06 Score=82.53 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 142 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|..|+..|+..+|..+..+-.+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666667778899999999999999999985 4788899999999999999999988877 4899999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
..-...-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888889999988776542 1122222334478899999998865 4445 57789888888899999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHH
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE 379 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (475)
|.+.|......+|++...|+.+.-+|.+.|+-.+|...+.+..+-+.. +|-.|.|-.+ ++-+ -++.+++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENyml--vsvd--vge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYML--VSVD--VGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhh--hhhh--cccHHHHHH
Confidence 999999999999999999999999999999999999999888876632 3444444322 2222 345556665
Q ss_pred HHHHHHHHHHHcCc
Q 038542 380 MLDEMGRKMKKAGY 393 (475)
Q Consensus 380 ~l~~l~~~m~~~g~ 393 (475)
...++. .|+..+-
T Consensus 609 A~~rll-~~~~~~~ 621 (777)
T KOG1128|consen 609 AYHRLL-DLRKKYK 621 (777)
T ss_pred HHHHHH-Hhhhhcc
Confidence 555543 3444433
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00026 Score=68.04 Aligned_cols=313 Identities=13% Similarity=0.113 Sum_probs=167.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChh--HHHHHHHHHHHcCC
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV--SWSAMIGGYARLGL 92 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~ 92 (475)
+=+.-+...+++++|.+....++..+ +.+......-+-+..+.+ .+++|+.+.+.-....+. -+-.-..+.-+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~-ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD-KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh-HHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 34566778899999999999998876 566666666666777878 999999777654431111 11122344457888
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-c-----------------------
Q 038542 93 STDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS-V----------------------- 147 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------------------- 147 (475)
.++|+..+. |..++. .+...-...|-+.+++++|..+|+.+.+++.+.. .
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 999998887 344433 3555566668899999999999999877643211 0
Q ss_pred ---cHHHHH---HHHHHhcCCHHHHHHHHHhc--------CCCC-----hh-----HHHHHHHHHHHcCChHHHHHHHHH
Q 038542 148 ---GLCNAL---IDMFAKCGDVDKALKLFRSM--------NGRT-----IV-----SWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 148 ---~~~~~l---i~~y~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
.+|..+ .-.+...|++.+|+++++.. .+.| +. .---|.-.+-..|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111111 12234445555555555544 1111 00 111122233445555555555555
Q ss_pred HHHcCCCCCHHHH----HHHHHHHhcCCCHHH--HHHHHHHhhhhc----------CCCCChhHHHHHHHHHHHcCCHHH
Q 038542 204 MLEAGVPPDDVAF----VGLLSACSHCGLVDK--GREYFDSMKNDF----------GIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 204 m~~~g~~p~~~t~----~~ll~~~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
..... ++|.... |.|+ +...-.++-. ++..++...... .-.....--++++.+| .+..+.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 55543 3332111 1111 1111111111 111111111000 0000000011122222 334455
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHH
Q 038542 268 AHEFIQKMP-IEANPIIWRTLISACC-AR-GELKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 268 A~~~~~~m~-~~p~~~~~~~li~~~~-~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
+.++-...+ ..|. ..+.+++..+. .. .....+.+++....+..|.+ .......+......|+|+.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666655553 3343 34445554432 22 24778888888888888876 3345566778899999999999998
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=4.7e-06 Score=71.96 Aligned_cols=118 Identities=6% Similarity=0.047 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC-CARGE--LKLA 300 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~--~~~a 300 (475)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666677666766665 34567778888888888888888888888877 4445 677777777764 56666 4888
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++++++++.+|.+..++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 899999999888888888888888888999999999988887643
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=2.2e-06 Score=70.00 Aligned_cols=121 Identities=13% Similarity=-0.011 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038542 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI 277 (475)
Q Consensus 199 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 277 (475)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 23543 44566677778888888888887765 33446677777888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 278 EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 278 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
.| +...|..+..++...|+.++|...++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 6777778888888888888888888888888888877776655544
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.00021 Score=69.37 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=90.3
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHH
Q 038542 20 CAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 96 (475)
+...|+-++|.......++.. ..+.+.|..+. .+.|...++++|.+.|..... .|...|.-+.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 344566777776666655542 22333444333 333333377777777766532 2445555555555555555555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCccHHHHHH------HHHHhcCCHHHHHH
Q 038542 97 IDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMV-NRSVGLCNALI------DMFAKCGDVDKALK 168 (475)
Q Consensus 97 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li------~~y~~~g~~~~A~~ 168 (475)
...-.+..+. .| ....|.....+.--.|+...|..+.+...+... .|+...+.-.. ....+.|.+++|.+
T Consensus 129 ~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5555555443 23 233444444455555555555555555554431 23332222111 22334455555555
Q ss_pred HHHhcCCC--Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 169 LFRSMNGR--TIV-SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 169 ~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
.+..-... |-. .-.+....+.+.++.++|..++..+... .||..-|.
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 54443322 111 1122333445555555555555555553 34444333
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=8.6e-06 Score=70.35 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=114.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655544332221 01223566677887787777764 667788888889999999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDM-LCRSGR--VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998876 334466777777776 467777 58999999988 4455 67888888999999999999999999999
Q ss_pred hCCCCCCchHH
Q 038542 309 GNEPMHESNYV 319 (475)
Q Consensus 309 ~~~p~~~~~~~ 319 (475)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99877655443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=6.9e-05 Score=69.60 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
++..+-..+...++.++|+.+..++.+. .|+. .+|+.--..+...+ .++++...++.+++...+ +..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 4555555666667777777777777763 3433 34443333444444 456666666666655322 33445444333
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 157 FAKCGDV--DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 157 y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
+.+.|+. +++..+++++.+ +|..+|+...-++...|+++++++.+.++.+.+. -|...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc-
Confidence 4444432 344444444432 2445555555555555555555555555555432 22233333322222211000
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR----GELKLAESITK 305 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----g~~~~a~~~~~ 305 (475)
+ .....+++.++..++ ...| |...|+-+...+... ++..+|.+.+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 000123344444333 3344 566777777766663 34456777788
Q ss_pred HHHhCCCCCCchHHHHHHHHHhc
Q 038542 306 RLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
++...+|.++.+...|+..|+..
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhh
Confidence 87777788877888888888763
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=2.2e-05 Score=77.04 Aligned_cols=212 Identities=12% Similarity=-0.023 Sum_probs=164.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCC
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGR 193 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 193 (475)
..+...+.+.|-...|..+++.+. .+.-.|.+|...|+..+|..+..+-. .+|...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345566778888888888888664 45567889999999999998877654 3577888888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 194 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
+++|.++++..... .-..+.....+.++++++.+.|+.-.+- -+-...+|-.+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 88999988875432 1112222233478899999988876652 23345678888888889999999998888
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 274 KM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 274 ~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.. ...| +...||++-.+|.+.++-.+|...++++.+.+-.+...|...+-.-.+.|.|++|.+.+.++....
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 6667 567899999999999999999999999999887777777777777889999999999999987643
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=4e-06 Score=68.46 Aligned_cols=95 Identities=7% Similarity=-0.165 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|.++..+..+..++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4666788899999999999999988 5555 7889999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhCC
Q 038542 329 LRWEKKTKIREVMDKRG 345 (475)
Q Consensus 329 g~~~~a~~~~~~m~~~~ 345 (475)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=2.1e-05 Score=80.35 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=145.4
Q ss_pred HHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCCccHHHHHHHHHHhcCC----HHHHHHHHHhcCCCChhHHHHHHHHH
Q 038542 114 TMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGD----VDKALKLFRSMNGRTIVSWTSVIAGL 188 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~ 188 (475)
....+=.+.+..|.-+++ .+++.++.+ ++...++... +.++..+.+... .++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 333333446677766655 566665542 2332222222 223333333332 2577788888999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
.+.|.+++|..+++...+. .|| ......+..++.+.+++++|....++... .-+-+......+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999984 566 45677788899999999999999999886 445566778888899999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
|..+|++. .-.| +..+|..+..++...|+.++|...|+++.+...+-...|+.++ ++...-...++.+.-.
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 99999998 2233 4788999999999999999999999999887644334444332 2333334455555433
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=7.3e-05 Score=78.32 Aligned_cols=231 Identities=11% Similarity=0.130 Sum_probs=172.6
Q ss_pred CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----CccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhH
Q 038542 109 CPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-----SVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T-IVS 180 (475)
Q Consensus 109 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~ 180 (475)
.|| ...|-.-+.-..+.++++.|+++.+++++. +.+ -..+|.+++++-..-|.-+...++|++..+- | ...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 454 456777778888899999999999888764 211 2347888888888888888899999988753 3 356
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
|..|...|.+.++.++|.++|+.|.+. .......|...+..+.+.++-+.|..++.+..+...-.-......-.+++-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888999999999999999999999876 3456677888889999999999999999888763111113444556667778
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCc-hHHHHHHHHHhccChhHHH
Q 038542 261 RSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE--PMHES-NYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~ 335 (475)
+.|+.+.+..+|+.. ..+.-...|+.+++.-.++|+.+.+..+|+++..+. |.... .|.-++..--+.|+-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 899999999999887 222256789999999999999999999999998876 33333 3445555445556666665
Q ss_pred HHHHHH
Q 038542 336 KIREVM 341 (475)
Q Consensus 336 ~~~~~m 341 (475)
.+-.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 554443
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.47 E-value=5.8e-05 Score=73.99 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=73.9
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
......+..|..+++-+..... ....|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+++.|.++-
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 3444455555555555544321 22234445555666666666666655432 2344455566666666665554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 281 (475)
.+.. |.......|.+-..-.-..|++.+|.+++-.+.. |+. -|.+|-+.|..++..++..+-.-..-.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 4332 2222233444444444445555555554433221 221 344555555555555555443101112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
.|...+..-+-..|+.+.|+.-|
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHH
Confidence 23333333444444444444443
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.9e-05 Score=70.74 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc---cHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch---hHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV---GLCNALIDMFAKCGDVDKALKLFRSMNGR---TI---VSW 181 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~ 181 (475)
....+-.....+...|+++.|...++.+.+.... +. .++..+..+|.+.|++++|...|+++.+. +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4556777788899999999999999999876422 22 46677889999999999999999988532 22 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 182 TSVIAGLAMH--------GRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 182 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
..+..++.+. |+.++|.+.|+.+... .|+.. ....+..... . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHH
Confidence 5555666654 7889999999999875 34432 2222211100 0 00000 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34667788999999999988887 3233 356888999999999999999999888876655
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0012 Score=63.57 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHH--------HhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 193 RGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.+.+|.+++...-+. .|.. ......+......|+++.|..++. .+.+. +..| .+...++..+.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhc
Confidence 466777777766554 3333 344556667788999999999998 44442 4444 4556777888888
Q ss_pred CCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhH
Q 038542 263 GRVKEAHEFIQKM--------PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 263 g~~~~A~~~~~~m--------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
++-+-|-.++.+. .-.+ -..+|.-+..--.++|+.++|...++++.+.+|.+..+...++.+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 7766666666554 2122 1233444444556789999999999999999999999999999999887 6777
Q ss_pred HHHHHHHH
Q 038542 334 KTKIREVM 341 (475)
Q Consensus 334 a~~~~~~m 341 (475)
|..+-+.+
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 77665443
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=6e-05 Score=77.98 Aligned_cols=233 Identities=8% Similarity=-0.004 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 120 (475)
+...+..|+..|...+ ++++|.++.+...+ | ....|-.+...+.+.++..++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 3345566666665555 66666666554332 2 222333333345555554444333 1 122
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHH
Q 038542 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 197 (475)
......++.....++..+...+ .+..++..|..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222222323333333333321 2333555566666666666666666666543 2455566666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (475)
.+++.+.... +...+++..+..+|..+.. ..+-+...+..+.... ....+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------Hhhhcc
Confidence 6666555442 3444455556666666554 2222222222111111 111122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
.--+.++..+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3345566667777888888899999999999988888777777777776
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=4.3e-05 Score=66.19 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=88.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
+-..+...|+-+.+..+....... .+.|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 444555556665555555543332 122333333455555666666666666666654 55556666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 264 RVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 264 ~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+-
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666665555 3333 34555666666666666666666666666666656666666666666666666665543
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00067 Score=73.68 Aligned_cols=331 Identities=9% Similarity=0.022 Sum_probs=201.8
Q ss_pred HhCCCCHHHHHHHHhccCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCCHH--HHHHHHHHHh
Q 038542 56 GSCEGGIELGRKVFDEMSE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV------CPDEI--TMVTVLSACT 123 (475)
Q Consensus 56 ~~~gg~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~~ 123 (475)
...| +++.+..+++.++. .+..........+...|++++|..++......-- .|... ....+...+.
T Consensus 385 ~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 385 FNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445 78888888777742 1333334445566778999999999988754310 11111 1122223456
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHH
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFRSMNG-------RT--IVSWTSVIAGLAM 190 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~ 190 (475)
..|+++.|...++.....-...+. ...+.+...+...|++++|...+.+... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988764212121 2345666778889999999999887642 11 2345556677889
Q ss_pred cCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCC--ChhHHHHHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEA----GVP--P-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIP--KIEHYGCMVDMLC 260 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p--~~~~~~~li~~~~ 260 (475)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+........ ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887552 211 1 223444556667778999999999887754211 112 2334445666778
Q ss_pred HcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch----HHHHHHHHHh
Q 038542 261 RSGRVKEAHEFIQKM----PIEANPIIWR-----TLISACCARGELKLAESITKRLIGNEPMHESN----YVLLSHIYAK 327 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m----~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~ 327 (475)
..|+.++|.+.++.. ........+. ..+..+...|+.+.|...+.......+..... +..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999888776 1111111111 12234456789999999887765433222211 3567788999
Q ss_pred ccChhHHHHHHHHHHhCC----CccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 038542 328 LLRWEKKTKIREVMDKRG----MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 394 (475)
.|++++|...++...... ........... ........++..++...+.+.++.-...|+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-------la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLIL-------LNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 999999999998876532 11100000000 0011223455677777777777666666663
No 112
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00036 Score=64.88 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
+++.+-..+...+ +.++|+.+.+...+. +..+|+.-..++...| ++++++..++++.... +-+..+|+..-..+
T Consensus 39 a~~~~ra~l~~~e-~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDE-RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4555666666666 999999999988753 5567877777777777 6799999999998864 22444565544445
Q ss_pred hccCC--hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc---CCh
Q 038542 123 TDLGA--LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMH---GRG 194 (475)
Q Consensus 123 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 194 (475)
.+.+. .+.+..+.+.+++... -+..+|+...-++.+.|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 55555 3667888888887653 4778888888889999999999999999875 3667888877666554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 195 ----LEAVALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 195 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
+++++...++.... +-|...|+-+...+... +...+|..++..... .-..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 35666666666642 34556666666666552 334556666666543 123345556666777664
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00011 Score=64.55 Aligned_cols=275 Identities=12% Similarity=0.035 Sum_probs=152.4
Q ss_pred CHHHHHHHHhccC-CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139 (475)
Q Consensus 61 ~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 139 (475)
++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+...+-+---....|+..+.. -+.++++.|.....+++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 4444555555555 234555555555666789999999999888775433345567655544 46788889999888888
Q ss_pred HcCCCCCc----------------------------cHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHH
Q 038542 140 KQMVNRSV----------------------------GLCNALIDMFAKCGDVDKALKLFRSMNGR-----TIVSWTSVIA 186 (475)
Q Consensus 140 ~~~~~~~~----------------------------~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~ 186 (475)
++|+...+ ..+|.-...+.+.|+++.|.+.+-.|+.+ |.+|...+.-
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 87653221 11222233466778888999988888754 5666554432
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC-CCChhHHHHHHHHHH-HcCC
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI-IPKIEHYGCMVDMLC-RSGR 264 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~ 264 (475)
. -..+++.+..+-+.-+.+.+ +-...||..++-.||+..-++.|-.++.+-..- .. -.+...|+. ++++. ..-.
T Consensus 286 ~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~ 361 (459)
T KOG4340|consen 286 M-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTA 361 (459)
T ss_pred h-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCC
Confidence 2 12455555566566666653 344578888888899888888888877553321 11 112333333 33333 3445
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH----HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 265 VKEAHEFIQKMPIEANPIIWRTLISAC-CARGELK----LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~~~~~li~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.++|.+-++.+.-......-..-+..- .+..+-+ .+.+-+++.+++- ..+...-...|.+..++..++++|+
T Consensus 362 pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr 438 (459)
T KOG4340|consen 362 PEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFR 438 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHH
Confidence 666666555441000000111111111 1111111 1222222222222 1123344566778888888888887
Q ss_pred HHHh
Q 038542 340 VMDK 343 (475)
Q Consensus 340 ~m~~ 343 (475)
.-.+
T Consensus 439 ~Sve 442 (459)
T KOG4340|consen 439 KSVE 442 (459)
T ss_pred HHHh
Confidence 6543
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00043 Score=70.51 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
...|+.+..+-.+.|...+|++-|-+ ..|+..|..+++.+++.|.+++-..++...++. .-+|... +.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 35799999999999999999887764 346778999999999999999999998887775 6666654 57899
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHH
Q 038542 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-++.. .+.|..|...+...|++..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887764 47777778888889999999988888764 45677777788888888777655
Q ss_pred HHH
Q 038542 338 REV 340 (475)
Q Consensus 338 ~~~ 340 (475)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 443
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.6e-05 Score=74.57 Aligned_cols=247 Identities=12% Similarity=0.009 Sum_probs=174.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.-+.++|+..+|.-.|+...... +-+...|.-|.......++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34667888888888888887763 2356677777777777888888888888887764 236667777778888888888
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 165 KALKLFRSMNGRT-IVSWTSVI---------AGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 165 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
.|...|+.-.... ...|.... ..+..........++|-++. +.+..+|......|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887652110 00000000 11222223445556666554 4454467777777777888899999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
..|+.... --+.|...||.|...++...+.++|..-|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999885 33345688999999999999999999999998 78885 5678889999999999999999998887654
Q ss_pred CCC----------CchHHHHHHHHHhccChhHHH
Q 038542 312 PMH----------ESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 312 p~~----------~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+.+ ...|..|=.++.-.++.|-+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 321 135555555555555555443
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00091 Score=60.45 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=110.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 93 (475)
+.-+...+|+..|..+++.-...+-+....+--.+...|.+.| ++++|..++..+.+ ++...|-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5556677888889988887765543333344445666777888 99999999887764 4666788888888888889
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
.+|..+-.+.. -++.....++....+.++-++-..+++.+...- .-.-+|..+....-.+++|++++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887765432 234444455556667777777777666655321 12223444444444577788887776
Q ss_pred CCC--ChhHHHH-HHHHHHHcCChHHHHHHHHHHHH
Q 038542 174 NGR--TIVSWTS-VIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 174 ~~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
... +....|. +.-+|.+..-++-+.+++.--.+
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 543 2233333 23345555555555555554443
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00045 Score=70.35 Aligned_cols=253 Identities=13% Similarity=0.137 Sum_probs=150.0
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (475)
.++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++....+
T Consensus 1090 ~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66667666666554 467999999999999999999888654 3677899999999999999999999998888
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHHcCChHHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------------------TIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A 197 (475)
..-.|.+ -+.||-+|++.+++.+-+++...-... ++.-|..|...+...|.+..|
T Consensus 1162 k~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1162 KVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred hhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7666554 468999999999998877765421110 223344444444455555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-P 276 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 276 (475)
.+.-++ ..+..||..+-.+|...+.+..| +|.- .++.....-..-++.-|-..|-+++...+++.. |
T Consensus 1240 VD~aRK------Ans~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1240 VDAARK------ANSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHhhh------ccchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 443322 12344555555555554444333 2221 122233344455666666666666666666654 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 277 IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 277 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
++. .-..|+-|.-.|.+-+ +++..+.++-.-.. ...--+++++..+--|.+..-++..-
T Consensus 1308 LERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 332 3334444444444432 33333322222111 11223556666666666666555543
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=9.9e-05 Score=69.47 Aligned_cols=120 Identities=21% Similarity=0.208 Sum_probs=105.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELK 298 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~ 298 (475)
-.+...|..++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345578999999999999887 55566777778889999999999999999998 66675 778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+|+.+++.....+|.++..|..|..+|...|+..++...+.+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877665
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.34 E-value=9e-07 Score=52.59 Aligned_cols=35 Identities=31% Similarity=0.688 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 112 (475)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=2e-05 Score=63.51 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+....-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+++.++..+..+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556667788999999999999988 4555 6778899999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHh
Q 038542 326 AKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~ 343 (475)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988775
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.4e-06 Score=51.79 Aligned_cols=34 Identities=50% Similarity=0.853 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 212 (475)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=4.3e-05 Score=66.16 Aligned_cols=134 Identities=16% Similarity=0.049 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTL 287 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 287 (475)
.|+......+-.++...|+-+....+...... ....+.......+....+.|++.+|...|++. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433336677788888998888888877654 44455566677899999999999999999998 445689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..+|.+.|+++.|...+.+.+++.|.++..++.|...|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998876544
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00086 Score=58.33 Aligned_cols=228 Identities=15% Similarity=0.066 Sum_probs=119.1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCCccHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li 154 (475)
++..-.-+-++|...|.+...+.- ... |-.|....+..+.......++.+.- ..+.+.+.......+......-.
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 333444455666666665443222 221 1123333333333333333333222 23333343333333323333334
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVD 230 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~ 230 (475)
..|.+.|++++|++.......-+....+ ...+.+..+.+-|.+.+++|.+. .+..|.+.|.+++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 5677778888888887774332333332 34455667777788888888763 355666666665543 35567
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGEL-KLAESITKRL 307 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~ 307 (475)
+|.-+|++|.. ...|+..+.+.+..+....|++++|..++++. ....++.+...++..-...|.. +.-.+.+.++
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 77777777765 45566666666666666677777777766666 2222445554444444444433 3344555555
Q ss_pred HhCCCCC
Q 038542 308 IGNEPMH 314 (475)
Q Consensus 308 ~~~~p~~ 314 (475)
....|..
T Consensus 269 k~~~p~h 275 (299)
T KOG3081|consen 269 KLSHPEH 275 (299)
T ss_pred HhcCCcc
Confidence 5555554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00048 Score=64.98 Aligned_cols=146 Identities=15% Similarity=0.070 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVD 257 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 257 (475)
..+--..-.+...|+.++|+..++.+... .+-|..........+...++.++|.+.++.+... .|+ ....-.+..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 34444455566789999999999998875 2344555555667889999999999999999863 555 566777889
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... ...|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999988 33448899999999999999988776654 34677889999999
Q ss_pred HHHHHHHhCC
Q 038542 336 KIREVMDKRG 345 (475)
Q Consensus 336 ~~~~~m~~~~ 345 (475)
.......++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9988887754
No 125
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.27 E-value=0.00092 Score=65.13 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=166.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
|..++..| ..+++...+++.+.+... .+-...|.....-.+...|+-++|........+..+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344443 356677777777777662 2333445444444456677888887777776665443 45567777777777
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 160 CGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
..++++|++.|.... ..|...|.-+.-.-++.|+++.......+..+.. +-....|..+..+.--.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888887654 3366666666655667777777777777776642 223456667777777788888888888
Q ss_pred HHhhhhcCCCCChhHHHHHHH------HHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 237 DSMKNDFGIIPKIEHYGCMVD------MLCRSGRVKEAHEFIQKMP-IEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~------~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+...+...-.|+...|.-... .....|.+++|++.+..-. -.-| ...-.+-...+.+.+++++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888775333466655554433 3456788888888777661 1112 2222334456778899999999999999
Q ss_pred hCCCCCCchHHHHHHHHH-hccChhHHHHHHHHHHh
Q 038542 309 GNEPMHESNYVLLSHIYA-KLLRWEKKTKIREVMDK 343 (475)
Q Consensus 309 ~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 343 (475)
..+|++...|..+..++. -.+..+....++....+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 999998888888888876 23333333355554443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=1.5e-05 Score=64.40 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..+..+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777778888888877776 3334 56777777778888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHhC
Q 038542 327 KLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888776653
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=2.7e-05 Score=73.79 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCA 293 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 293 (475)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++.+. ...| +...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566666677788888888877764 233 4455667777777777777777766 2233 66666667777889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.++++.|..+++++.+..|.+..+|..|..+|...|+++.|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=0.00044 Score=70.90 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDA-IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...+.+=.+.+.-|..++| .+++.+..+ ++...........+..-...... ....+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 33444444555566666666 344444432 33333333333333222222222 24557888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
...+.|.+++|+.+++...+ | +...+..+...+.+.+++++|+...++..... +-+......+..++.+.|++++|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999998864 3 56788889999999999999999999999863 33456677778889999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|...-|+.++. +...-..+++++.
T Consensus 174 ~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 174 DACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 999999997 33345788999999999999999999999998 33455566665543 3333445555554
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2.2e-06 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 110 (475)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.21 E-value=0.0011 Score=65.31 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=114.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHH
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 96 (475)
+.+....+.|.+|..+++.+... ...+.-|..+.+.|+..| +++.|.++|-+. ..++--|..|.++|+|..|
T Consensus 739 ieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~-dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKG-DFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccch-hHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 34444556677777777766655 233445666777777777 888888877553 2355567777788888877
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 176 (475)
.++-.+.. |.......|..-..-.-..|.+.+|.+++-.+ | .|+ .-|.+|-+.|..++.+++..+-...
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 77755443 22333444444444456667777776665332 1 223 2466777777777777776654321
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 177 -TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 177 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
-..|...+..-|-..|+...|...|-+..+ |.+.++.|-.++.+++|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 123444555666667777777766654332 445556666666666665543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.0022 Score=66.86 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=160.8
Q ss_pred CCC-CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHH
Q 038542 6 VSP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI-HVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83 (475)
Q Consensus 6 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~l 83 (475)
+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...|.+.+ +.+++..+ .+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~-~~~~~~lv-------------~~ 89 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRR-PLNDSNLL-------------NL 89 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhc-chhhhhhh-------------hh
Confidence 344 4457888999999999999999999977765 4444 33333333566666 65544433 45
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
+.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 55556666665555555666653 3355678889999999999999999999999987 55888999999999999 99
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
++|.+++.+.. .-|...+++.++.++|.++... .|+... |..+++.....
T Consensus 166 ~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~---------------- 216 (906)
T PRK14720 166 EKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH---------------- 216 (906)
T ss_pred HHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh----------------
Confidence 99999988753 3477788999999999999885 344332 33333222211
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.|..--..++-.+...|-...+++++..+++.+ ...| |.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 121222334444555666777777777777776 4343 4455555555554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=8.3e-05 Score=60.07 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=86.8
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038542 200 LFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI 277 (475)
Q Consensus 200 l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 277 (475)
+|++.... .|+ ......+...+...|++++|...++.... ..+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555543 343 34556677778888999999999988876 23446778888888888999999999888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 278 EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 278 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.| +...|..+...+...|+++.|...+++..+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5777888888899999999999999999999987754
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=9.8e-05 Score=70.03 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
..+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..... +-|......-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34556666667888888888888887776666677788888888888888888887652 34555555556667788888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
+.|..+.+++.+ -.+-+..+|..|..+|.+.|++++|+-.++.+|..|
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888875 233344588888888888888888888888886554
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00069 Score=67.65 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=157.9
Q ss_pred ChhHHHHHHH--HHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-C--------CCCCH
Q 038542 44 DIHVQNTLVH--MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-G--------VCPDE 112 (475)
Q Consensus 44 ~~~~~~~li~--~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 112 (475)
|..+-.++++ .|...| +.+.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 4455555554 356667 8888887766654 4567888888888888877776666555431 1 1222
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHc
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMH 191 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 191 (475)
.+=.-+......+|.+++|+.+|.+-.+. ..|=..|-..|.|++|.++-+.-..-- -.||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222333346788899999999887654 234456777889999888765432111 13455455555556
Q ss_pred CChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 192 GRGLEAVALFEEM----------LEAG---------VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 192 g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
++.+.|++.|++. .... -.-|...|.-........|+++.|+.+|...+. |
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~ 941 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------Y 941 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------h
Confidence 7777777777652 2111 123445566666677788999999999887765 6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
-+++...|-.|+.++|-++-++-+ |......|.+.|-..|++.+|...|.++.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677788888888888888888765 55556667788888888888888777654
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0091 Score=57.29 Aligned_cols=336 Identities=10% Similarity=0.095 Sum_probs=198.9
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--ChhHHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER--DSVSWSAMI 84 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--~~~~~~~li 84 (475)
+-|..+|+.|++-+... ..++++..++++... ++.....|..-|.+-.+.. +++..+++|.+.... ++..|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 44778999999877665 999999999999875 4667788888899888888 999999999998654 777888777
Q ss_pred HHHHHc-CChhH----HHHHHHHH-HHCCCCCCHH-HHH---HHHHH------HhccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 85 GGYARL-GLSTD----AIDLFRQM-QISGVCPDEI-TMV---TVLSA------CTDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 85 ~~~~~~-g~~~~----A~~~~~~m-~~~g~~p~~~-t~~---~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
+--.+. |+... ..+.|+-. .+.|..+-.. .|+ ..+.. +....+++..+.++++++...+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 654443 22222 22333322 3335433222 222 23322 233335566667777766432211001
Q ss_pred HHH------HHHHH-------HHhcCCHHHHHHHHHhcCC--------------CC-------hhHHHHHHH--------
Q 038542 149 LCN------ALIDM-------FAKCGDVDKALKLFRSMNG--------------RT-------IVSWTSVIA-------- 186 (475)
Q Consensus 149 ~~~------~li~~-------y~~~g~~~~A~~~~~~~~~--------------~~-------~~~~~~li~-------- 186 (475)
.|+ .=|+- --+...+..|++++++... +. +..|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111 00110 1122335556666554321 00 011211111
Q ss_pred -----------------------------------------HHHHcCC-------hHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 187 -----------------------------------------GLAMHGR-------GLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 187 -----------------------------------------~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 3344444444433222223333433
Q ss_pred HHHHHh---cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHH
Q 038542 219 LLSACS---HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 219 ll~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~~~ 291 (475)
+...-- .-...+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.++ +..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332111 1112445556666666554555654 6777888888888889999999888 4444 778888888877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
+. ++..-|.++|+--+...++++..-...+.-+...++-..+..+|++....++.
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 64 67888999999988888877766667777788889989999999988887544
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.0013 Score=65.81 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=223.3
Q ss_pred CcchHHHHHH--HHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-----------
Q 038542 9 NKFTYPFVLK--ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER----------- 75 (475)
Q Consensus 9 ~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~----------- 75 (475)
|..|=.+++. .|...|+.+.|-.-...+. +..+|..+..|+.+.. +++-|.-.+..|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4444455552 3456678887766655543 3468999999999988 888888777777531
Q ss_pred Ch-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH
Q 038542 76 DS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 76 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 154 (475)
|. .+=.-....-...|..++|+.+|++-+. |..+=..|...|.+++|.++-+.--+..+. .+|....
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 11 1111222333466888888888888765 334445567788888887775532222111 2344444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 155 DMFAKCGDVDKALKLFRSMNGR-----------------------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.-+-..+|.+.|++.|++...+ |...|.=-....-..|..+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 4455567788888877765322 222222222233346788888888776654
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|-++++..|-.|+.++|-++-++-. |......|...|-..|++.+|..+|.+.. ++...|+.|
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq------afsnAIRlc 1003 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRAQ------AFSNAIRLC 1003 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 5567777888999999998876533 45566678899999999999999998862 333334433
Q ss_pred HhcCC---------------HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH--------HHhCCCcc
Q 038542 292 CARGE---------------LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV--------MDKRGMKK 348 (475)
Q Consensus 292 ~~~g~---------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------m~~~~~~~ 348 (475)
..++- .-.|-++|++. ......-...|-++|.+.+|.++--+ +...++.+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 33322 22233333331 12233445678888888888776322 12222222
Q ss_pred CCCccEEEECCEEEEEEeCCCCCccHHHHHHHHH------HHHHHHHHcCcccCCc-----ccc--ccCChhhhhhhhhh
Q 038542 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD------EMGRKMKKAGYVPTTS-----EVL--LDINEEDKEDALNK 415 (475)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~l~~~m~~~g~~pd~~-----~~~--~~~~~~~~~~~~~~ 415 (475)
... ..+-+....|+. .|.+.+++..+|- +.++..++.|+..... |.. ...+++++..+|..
T Consensus 1077 ~sD---p~ll~RcadFF~---~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1077 GSD---PKLLRRCADFFE---NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred CCC---HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 111 111111111222 3455555554432 3333334444332211 111 12344444444432
Q ss_pred hhHHHHH--HH---hccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEee
Q 038542 416 HSEKLAI--AF---ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465 (475)
Q Consensus 416 ~~e~la~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~r 465 (475)
..|.+-- +| .-.-|..|..++.++.|-..||-....-|-+...+|||-+=
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYIm 1205 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIM 1205 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeee
Confidence 2221110 00 11235566666777777777777777777777777887664
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=5.1e-06 Score=48.90 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.08 E-value=0.00042 Score=70.57 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
...+|..+...+....+++-|...|.+...++|.+...|......-...|+.-++..+|..
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4555666666666666777777777777777777766666666666666766666666655
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0009 Score=58.22 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=149.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
++-+.-.|.+..++..-...... +-+...-..+-++|...|.+... ...+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45566678888777665554433 13444444566666666655322 122222 2223333333333333333443
Q ss_pred HHH-HHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 164 DKA-LKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 164 ~~A-~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
++- .++.+.+..+ +......-...|++.|++++|++..+... ..+.. ..=...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333444333 22222223445888999999998887621 12222 2223445667788999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
|..- .+..+.+.|..++.+ .+.+.+|.-+|++| ...|+..+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9862 344566666666654 46688999999999 4678888888888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhccChhHH-HHHHHHHH
Q 038542 313 MHESNYVLLSHIYAKLLRWEKK-TKIREVMD 342 (475)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 342 (475)
.++.+...++-.-...|.-.++ .+....++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 8888888887777777765443 44444444
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0021 Score=55.60 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=92.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
-..|++++|+++++...+.. +.|.+++..=+...-..|+.-+|++-+....+ .+..|.+.|.-+...|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34678888888888888765 55666776666666667777788887877776 5677888899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCch
Q 038542 269 HEFIQKM-PIEA-NPIIWRTLISACCA---RGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 269 ~~~~~~m-~~~p-~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.-.++++ -+.| ++..+..+...+.. ..+++.|.+++.+.+++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 8888888 3445 44455555554433 346778899999999998855443
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=9.8e-06 Score=46.48 Aligned_cols=31 Identities=29% Similarity=0.797 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 108 (475)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00014 Score=53.87 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|.+.+++.....|.+...+..+..++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 3334 34667777788888888889998888888888887778888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 038542 330 RWEKKTKIREVMDK 343 (475)
Q Consensus 330 ~~~~a~~~~~~m~~ 343 (475)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.0011 Score=54.34 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHHcCCH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPD---DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI--EHYGCMVDMLCRSGRV 265 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~ 265 (475)
.++...+...++.+.... +.+ ......+...+...|++++|...|+..... ...|+. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555542 111 122223344555566666666666665553 211211 1223344455555566
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 266 KEAHEFIQKMPIE-ANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 266 ~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
++|+..++..+-. .....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6665555554211 1233444445555555555555555544
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00055 Score=56.03 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP----IIWRTL 287 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l 287 (475)
..|..++.++ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+. .....|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455566665 48889999999999988533221 1234444667888999999999999998 222433 345557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
...+...|++++|...++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999999763 23344456778899999999999999999875
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.6e-05 Score=45.54 Aligned_cols=29 Identities=38% Similarity=0.624 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00034 Score=54.90 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLIS 289 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~ 289 (475)
+..+...+...|++++|...|..+.....-.| ....+..+..++.+.|++++|.+.|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554211101 1233444555555556666665555554 11221 344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
++...|+.+.|...++++.+..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666665543
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=2.3e-05 Score=57.36 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 263 GRVKEAHEFIQKM----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 263 g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
|++++|..+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 2111333444455566666666666666655 4444444444445566666666666666665
Q ss_pred HH
Q 038542 339 EV 340 (475)
Q Consensus 339 ~~ 340 (475)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00037 Score=54.69 Aligned_cols=96 Identities=19% Similarity=0.096 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLL 321 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 321 (475)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677788899999999999999988 22332 4567778899999999999999999999887765 4568888
Q ss_pred HHHHHhccChhHHHHHHHHHHhCC
Q 038542 322 SHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988754
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0053 Score=58.78 Aligned_cols=245 Identities=11% Similarity=-0.039 Sum_probs=155.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccH-------HHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL-------CNA 152 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ 152 (475)
.-.+.++.-+..++..|++-+....+.. -+..-++....++...|.+.+........++.|-. ...- ...
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456777777788888888888877643 23333444555577777777776666665555422 1111 122
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLV 229 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 229 (475)
+..+|.+.++++.|...|.+...+ +.. ...+....++++.......- +.|.. .-...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 344777778888888888774321 211 11222334444444444333 23332 1122235667789999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
..|...|.++.+ ..+.|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 44667889999999999999999998876655 44453 444544455666778999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 308 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++.+|.+......+.+++......+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999988766555555554432233333333
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.0006 Score=64.84 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=63.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
.......|++++|...|+...+ --+.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3445556777777777777665 22334556666666677777777777776666 3344 455666666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
++|...++++++++|.++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777777777777665544443
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.0001 Score=51.52 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc-ChhHHHHHHHHHHh
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL-RWEKKTKIREVMDK 343 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 343 (475)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999887664
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0069 Score=52.52 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=121.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG-LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
|..++-+....|+.+-|...++.+... + |...-... -.--+-..|++++|.++++.+.++ -+.|..+|-.-+.+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 334455566678888888888888775 2 43321111 111234578999999999999984 355677788778788
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc---ChhHH
Q 038542 260 CRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL---RWEKK 334 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 334 (475)
-..|+--+|.+-+.+. .+..|...|.-|-..|...|+++.|.-.+++++=..|.++..+..+...+.-.| +.+.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888777665 455699999999999999999999999999999999999988888888876555 56677
Q ss_pred HHHHHHHHhCC
Q 038542 335 TKIREVMDKRG 345 (475)
Q Consensus 335 ~~~~~~m~~~~ 345 (475)
.+.+.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77777766543
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.70 E-value=0.0016 Score=66.47 Aligned_cols=179 Identities=9% Similarity=-0.024 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 163 VDKALKLFRSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 163 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
...|...|-+....|+ ..|..|...|+..-+...|.+.|++..+.. ..|..........|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4444444444333332 567777777776667777777777776643 334555666777777777777777763222
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+.-....-...|....-.|...++...|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211000001122222333455667777777777766 4445 67778888888888888888888888887777776544
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
-.-..-+-+..|.+.++...+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555566677777776666554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00072 Score=49.94 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.+..+...+...|++++|.+.++.. ...| +..++..+...+...|+++.|...+.+..+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444444454444443 1112 223455555555555555556555555554443
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.001 Score=63.27 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=82.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
....+...|++++|+.+|++..+.. +.+...|..+..+|...|++++|+..++.+.. --+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3456778899999999999999864 45677888889999999999999999999986 23346778889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 264 RVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 264 ~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5566544444443
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0026 Score=58.81 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=159.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
.....+.+..++.+|+..+....... +-+..-|..-+..+...++++++.--.+.-++.... ....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34455666777888888888877753 223445555555566666666665444333322100 1111222223333333
Q ss_pred CHHHHHHHHH---------------hcCC-----CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 162 DVDKALKLFR---------------SMNG-----RTIVSWTSV-IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 162 ~~~~A~~~~~---------------~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
+..+|...|+ .... |.-.+|-.+ ...+...|++++|...--..++.. ..+. +...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchh--HHHHh
Confidence 3333333332 1111 111233322 234667788888888777666542 1222 22233
Q ss_pred H--HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH-------------HHHHHHHcCCHHHHHHHHHhC-C-----CCC
Q 038542 221 S--ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-------------MVDMLCRSGRVKEAHEFIQKM-P-----IEA 279 (475)
Q Consensus 221 ~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m-~-----~~p 279 (475)
+ ++...++.+.|...|++..+ ..|+-..-.. =..-..+.|++.+|.+.+.+. + .+|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3 34457788888888887663 3444322111 123356789999999999987 3 445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
+...|.....+..+.|+.++|+.-.+++.+++|.-...|..-.+++...++|++|.+-++...+...
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6677888888889999999999999999999988888888889999999999999999988776543
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.043 Score=56.00 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=65.4
Q ss_pred CHHHHHHHHhccCCCC-hhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERD-SVSWSAMIGG--YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 137 (475)
++..|....+++.++. -..|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...+.++++..+|+.
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5666666666654421 1223333333 34567777777666666544322 566666666666777777777777776
Q ss_pred HHHcCCCCCccHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHH
Q 038542 138 IEKQMVNRSVGLCNALIDMFAKCGDVDK----ALKLFRSMNGRTIVSW 181 (475)
Q Consensus 138 ~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~~~~~~~ 181 (475)
..+. .|+......+..+|.+.+++.+ |.++++..+++--.-|
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence 6654 2345555556666666665543 4445554443333333
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.062 Score=54.91 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=99.5
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--YGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 96 (475)
..+++.+|.+-.+.+.+. .|+.. |...+.+ ..+.| +.++|..+++.... .|..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457889999998888876 45543 2233333 35677 99999999888754 3888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
..+|++.... -|+..-...+..+|.+.+++.+-.++--++-+. ++-+.+.+=+.++.+..
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 9999999874 678888888999999999998877776666664 44455555556665554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0019 Score=54.64 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 254 (475)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345666777777788888888888888776432222 356677777788888888888888777652 2224455566
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 122677888888888888876 5566666655554
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00018 Score=49.63 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+...+...|++++|...|+++++..|.++..+..+..++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677888888888888888888888888888888888888888888888888765
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0046 Score=50.12 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=72.3
Q ss_pred HhccC-CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 038542 69 FDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146 (475)
Q Consensus 69 f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (475)
+..+. +.+......+...+...|++++|.++|+-+... .| +..-|-.|...|-..|++++|...|.......+ .|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence 33444 445555666677777888888888888887764 34 444555666667778888888888888877763 46
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
+..+-.+..+|.+.|+.+.|++.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777778888888888888887764
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0047 Score=61.52 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444433333445555555555444 3334444444444455555555555555555555554443
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0022 Score=58.77 Aligned_cols=133 Identities=13% Similarity=0.155 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344443333 33457788899999999984 4456777888999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22233 3589999999999999999999999999887764
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0011 Score=55.97 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22221 35667777777788888888888888888777777777777777
Q ss_pred HHhccC
Q 038542 325 YAKLLR 330 (475)
Q Consensus 325 ~~~~g~ 330 (475)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777665
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.001 Score=59.07 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=73.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
..+.+++++|+..|...++ -.+-|..-|..-..+|.+.|.++.|.+-.+.. .+.| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4556778888888887775 23345556666677888888888887776665 5566 467888899999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHH
Q 038542 301 ESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
++.|++.++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999999988744444433
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0014 Score=49.23 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC--------CHHHHHHHHHHhhhhcCCCCChhH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCG--------LVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999999887643 344567788888875 88999999
Q ss_pred HHHHHHHHHH
Q 038542 252 YGCMVDMLCR 261 (475)
Q Consensus 252 ~~~li~~~~~ 261 (475)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887764
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0013 Score=55.36 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++....|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777778888899988888877 23232 357888889999999999999999999999988888888888
Q ss_pred HHHH-------hccChhHHHHHHHHH
Q 038542 323 HIYA-------KLLRWEKKTKIREVM 341 (475)
Q Consensus 323 ~~~~-------~~g~~~~a~~~~~~m 341 (475)
.+|. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 777877666665543
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.08 Score=49.25 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
.|.-+...|+...|.++-++.. .||..-|...+.+++..++|++-.++-.. +-++.-|...+..+.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 3444445555555555544331 24555555555555555555554443221 112344555555555555
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 264 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
+..+|..++.+++. ..-+..|.+.|++.+|.+..
T Consensus 252 ~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHH
Confidence 55555555555321 22334445555555554443
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.084 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 293 (475)
.+.+..+.-|...|+...|.++-.. +.+ |+...|-..+.+|+..++|++-.++... +.++.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566777778888877776444 444 7888999999999999999998887664 2345778889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.|+.++|..+..+ ..+..-+..|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999988877 12356778899999999998875443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0039 Score=57.18 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA-CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888899999999888543 2234444444333 33456777799999988876 56678888888999
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 038542 157 FAKCGDVDKALKLFRSMNGR------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 207 (475)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987643 2357888888888888888888888888774
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.46 E-value=0.0016 Score=55.29 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.7
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-------------
Q 038542 167 LKLFRSM--NGRTIVSWTSVIAGLAMH-----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC------------- 226 (475)
Q Consensus 167 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 226 (475)
...|+.. ..++..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888888754 67777778888999999999999999999887542
Q ss_pred ---CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC
Q 038542 227 ---GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 227 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (475)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 244668888999988 4999999999999888877664
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0036 Score=59.92 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHH
Q 038542 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPII 283 (475)
Q Consensus 208 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~ 283 (475)
+.+.+......+++.+....+++++..++...+.... ...-..|..++|..|...|..+++..+++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4566778888889999888889999888887775311 1122334558999999999999999998765 88899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHhc
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNE-PMHESNYVLLSHIYAKL 328 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 328 (475)
++.|++.+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888876554 66667777666666555
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00041 Score=47.79 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4455 677888888999999999999999999999888763
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.00059 Score=60.48 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
.-+.+.+++.+|+..|.+. .+.| |.+.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4467889999999999988 6676 7788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 038542 335 TKIREVMDK 343 (475)
Q Consensus 335 ~~~~~~m~~ 343 (475)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999866554
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.00061 Score=49.75 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (475)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.... +. .+......+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777665321 1333444466677777777777777766211 11 12233334466666777777777
Q ss_pred HHHHh
Q 038542 270 EFIQK 274 (475)
Q Consensus 270 ~~~~~ 274 (475)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.015 Score=53.53 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=85.3
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV---CPD--EITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
++++|..+|++ ....|...|++++|.+.|.+...... .+. ...|......+ +..++++|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 56666666544 56777788888888888877643211 111 11122222222 222444444444
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCC
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEA----GVP 210 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~ 210 (475)
.. .++.|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. | .
T Consensus 98 ~~---------------A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 98 EK---------------AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp HH---------------HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HH---------------HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 33 34556666666666555444 34455555 6666666666665432 2 1
Q ss_pred CC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC-----CCh-hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 211 PD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII-----PKI-EHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 211 p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+. ...+..+...+.+.|++++|..+|++.... ... .+. ..+-..+-++...|++..|.+.+++.
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 123445556666666777777766666542 111 111 12222333444556666666666654
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0035 Score=47.18 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPDEITMVTVLSACTDLG--------ALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
|-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999876543 23456788889999999999999
Q ss_pred HHHHHHHHHh
Q 038542 150 CNALIDMFAK 159 (475)
Q Consensus 150 ~~~li~~y~~ 159 (475)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887664
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0025 Score=60.94 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=91.5
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R-----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 113 (475)
+.+.+......+++...... +++.+..++-+... | -..|.+++++.|...|..++++.++..=...|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~-~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKD-DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHh-HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 33555556666777776666 78888888777654 2 12356789999999999999999999888899999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|++.++..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888776666666665555555554
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.36 E-value=0.029 Score=53.96 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHH
Q 038542 93 STDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALKLF 170 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 170 (475)
.+.....+++++..- +.| ..+|...++.-.+..-++.|+.+|.++.+.+..+ +++++++++.-|+ .+|.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 344445555554321 222 2345566666666666777777777777666555 6666777776665 45666777777
Q ss_pred HhcCC--CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-
Q 038542 171 RSMNG--RTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFG- 244 (475)
Q Consensus 171 ~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~- 244 (475)
+--.. .|... -+..+.-+...++-..|..+|++....++.||. ..|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 64332 23322 234455556666666777777777666555553 4566677666667777776666666555333
Q ss_pred -CCCChhHHHHHHHHHHHcCCHH
Q 038542 245 -IIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 245 -~~p~~~~~~~li~~~~~~g~~~ 266 (475)
..|...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00023 Score=49.56 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=41.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...|++++|.+.++++.+..|.+...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888866654
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.018 Score=50.18 Aligned_cols=136 Identities=10% Similarity=0.033 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHH-----H
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL-----I 154 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i 154 (475)
-+.++..+.-.|.+.-.+.++.+..+...+.++...+.+.+...+.|+.+.|...++...+..-..+....+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34566666667777778888888877655556667777777778888888888888877654433333333333 3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
..|.-..++..|...|.++... |++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3455566777777777776643 4555555555555567888888888888774 44444433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.0084 Score=46.74 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=66.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CccHHHHHHHHH
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR--SVGLCNALIDMF 157 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y 157 (475)
.+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........+ +..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776554 2355566667778888888888888777653211 222223334455
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 188 (475)
...|+.++|.+.+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766554444444444444444
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0077 Score=53.87 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=85.4
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR---GELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
-+-|.+.|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++..+ ....++..+|++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999888 3333 667777777665443 3467889999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999865
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.00098 Score=47.08 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..+...++++.|.+++++++..+|.++..+.....+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788899999999999999999988889999999999999999999998887643
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.0021 Score=59.30 Aligned_cols=258 Identities=15% Similarity=0.048 Sum_probs=146.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHH--H--cCCC-CCccHHHHHHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIE--K--QMVN-RSVGLCNALID 155 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~li~ 155 (475)
.-+++.|+....+.+|+...+-|. -|.. .|+.+-++|.-.+++++|.++|..=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 346677777777777777777662 2333 34445566666777777777664321 1 0100 01112223344
Q ss_pred HHHhcCCHHHHHHHHHhcC-------CC--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH-
Q 038542 156 MFAKCGDVDKALKLFRSMN-------GR--TIVSWTSVIAGLAMHGR--------------------GLEAVALFEEML- 205 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~- 205 (475)
.+--.|.+++|.-.-.+-. .+ ...++-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544322111 11 11233334445544331 233444443321
Q ss_pred ---HcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh---hhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 038542 206 ---EAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSM---KNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-- 275 (475)
Q Consensus 206 ---~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 275 (475)
+.|-. .-...|..|.+.|.-.|+++.|+...+.- .+++|-.. ....+..+..++.-.|+++.|.+.|+..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 11234566666666778899888766532 23345433 2356777888888889999988888765
Q ss_pred -----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 276 -----PIE-ANPIIWRTLISACCARGELKLAESITKRLI----GNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 276 -----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+-+ ....+..+|..+|.-..+++.|+.++.+-+ +++ .-...++-+|.++|...|..++|....+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222 245566778888888888999988887743 222 22345788899999999999888877665543
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.033 Score=51.25 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCC---C-----CCCH
Q 038542 215 AFVGLLSACSHC-GLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKMP---I-----EANP 281 (475)
Q Consensus 215 t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~ 281 (475)
.+..+...|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. . +.++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444566677777 8999999998887764332222 2456677788999999999999999871 1 1122
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 282 I-IWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 282 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
. .+-..+-.+...||+..|.+.+++.....|.-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 23333445667899999999999999888743
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.058 Score=48.25 Aligned_cols=173 Identities=10% Similarity=0.079 Sum_probs=97.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--Ch-h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR--TI-V---SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH- 225 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~--~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~- 225 (475)
....+.+.|++++|.+.|+++... +. . ..-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344455677777777777776532 11 1 1223456677778888888888877764221112233333333321
Q ss_pred -C---------------CC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 038542 226 -C---------------GL---VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286 (475)
Q Consensus 226 -~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 286 (475)
. .+ ...|...|+.+.+ -|=...-..+|...+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 0 11 1233344444443 2222223344443333331000000 113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..-|.+.|.+..|..-++.+++.-|..+. +...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445678889999999999999988776544 56678899999999999998876654
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.011 Score=49.67 Aligned_cols=81 Identities=7% Similarity=-0.105 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 154 (475)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4466677777777788888888777776542222 12356666666777777777777777766542 22233444444
Q ss_pred HHHH
Q 038542 155 DMFA 158 (475)
Q Consensus 155 ~~y~ 158 (475)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.15 E-value=0.069 Score=50.23 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR---TI----VSWTSVIAGLAM---HGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
-.|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888999999999888754 11 111223445556 788999999998866666678888888777
Q ss_pred HHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH----HHHHHH---HhC-------CC
Q 038542 221 SACSH---------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK----EAHEFI---QKM-------PI 277 (475)
Q Consensus 221 ~~~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~ 277 (475)
..|-. ....++|...|.+. +.+.|+..+--.++..+...|.-. +..++- ... .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22356666666543 344555544333344444444321 222221 111 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..+-..+.+++.++.-.|+.+.|.+..+++....|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2355556677777777777777777777777776543
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.0051 Score=52.29 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHHHhcc--CCCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 038542 66 RKVFDEM--SERDSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL------------- 125 (475)
Q Consensus 66 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 125 (475)
...|+.. ..++-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666777777776654 45555666677777777777788888777776441
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 126 ---GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 126 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
.+.+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2446778888888888888888888888888876654
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.076 Score=52.26 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 93 STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+-+.+.-+++|++.|-.|+... +...|+-.|.+.+|.++|.+ .|.. |.-+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3345555678888888888764 34457778888888888753 4433 3456777777777777776654
Q ss_pred cCCC--------------ChhHHHHHHHHHHHcCChHHHHHHHHH-----H-HHcCC---CCCHHHHHHHHHHHhcCCCH
Q 038542 173 MNGR--------------TIVSWTSVIAGLAMHGRGLEAVALFEE-----M-LEAGV---PPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 173 ~~~~--------------~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~g~---~p~~~t~~~ll~~~~~~g~~ 229 (475)
-... |+.-=.+....+...|+.++|..+.-+ | .+-+- ..+..+...+...+-+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 3211 111111223344556666666554322 1 11111 23344555556666667778
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHhcCCH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPII-----------WRTLISACCARGEL 297 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~li~~~~~~g~~ 297 (475)
..|-++|..|-. ...++++....+++++|..+-++.| +.||+.. +...-.+|.+.|+-
T Consensus 764 gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 764 GLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred chHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 888888888764 2467888888999999999888883 4444321 11223455666666
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
.+|.++++++.
T Consensus 834 ~EA~~vLeQLt 844 (1081)
T KOG1538|consen 834 REAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHHhh
Confidence 66666666654
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.00096 Score=46.53 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG-ELKLAESITKRLIGNEP 312 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p 312 (475)
++..|..+...+...|++++|...|++. ...| +...|..+..++...| ++++|.+.+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566777888888888888888888877 4444 5677888888888888 68999999988888776
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.0043 Score=50.55 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChh
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 332 (475)
...-+-..|++++|..+|+-+ -..| +..-|..|...+-..++++.|...+.....++++|+..+.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 2223 56678888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 038542 333 KKTKIREVMDK 343 (475)
Q Consensus 333 ~a~~~~~~m~~ 343 (475)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.00074 Score=46.93 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444555444444 2222 44444445555555555555555555555554443
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.10 E-value=0.025 Score=56.38 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHc--------CCHHHHHHHHH
Q 038542 208 GVPPDDVAFVGLLSACSHC-----GLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRS--------GRVKEAHEFIQ 273 (475)
Q Consensus 208 g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 273 (475)
+.+.|...|...+++.... +..+.|..+|++..+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3466778888888875442 236788888888885 3555 34455444433221 12344555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 274 KM---P-IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 274 ~m---~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+. + ...+...|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 233567788887777788999999999999999999 57899999999999999999999998876543
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.41 Score=48.29 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=181.8
Q ss_pred ccCCCCCCcchHHH-----HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--CCHHHHHHHHhccCC
Q 038542 2 LEYGVSPNKFTYPF-----VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE--GGIELGRKVFDEMSE 74 (475)
Q Consensus 2 ~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--g~~~~A~~~f~~~~~ 74 (475)
.+-|++.+..-|.. ++.-+...+.+..|.|+-..+...-... ..++.....-+.+.. .+.+.+..+=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34566555544443 4555556677777877776664221111 566666666666652 133444555555555
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 038542 75 --RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC----PDEITMVTVLSACTDLGALEVGKWVESFIEKQM------ 142 (475)
Q Consensus 75 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 142 (475)
..-++|..+.+---..|+++-|..+++.=...+.. .+-.-+...+.-+...|+.+...++.-.+.+.-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 45678888888888889999888877643332211 122234556666777888877776666554321
Q ss_pred -----CCCCccHHHHHHH--------HHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCCh---HHH--
Q 038542 143 -----VNRSVGLCNALID--------MFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRG---LEA-- 197 (475)
Q Consensus 143 -----~~~~~~~~~~li~--------~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~---~~A-- 197 (475)
.+....+|.-++. .+...++-..+...|..=. ..-.........++.+.... ++|
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1112222222221 0011122122222111000 01111222233444444331 111
Q ss_pred -----HHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 198 -----VALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 198 -----~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+.+.+.+.. .|......|.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 122222221 2333444455566667777888888888766544 37888888888899999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 272 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
-+... .+.-|.-+..+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 88773 134456678889999999999888865422 2256788899999998887653
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.0063 Score=54.88 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHE---SNYVLL 321 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 321 (475)
..|...+..+.+.|++++|...|+.. ...|+ ...+..+..+|...|+++.|...|+.+.+..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777776 22332 24555677778888888888888888887766543 345556
Q ss_pred HHHHHhccChhHHHHHHHHHHh
Q 038542 322 SHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+.+|...|++++|.++++.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6777788888888888877765
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.15 Score=42.37 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHH
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI-IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NPII 283 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 283 (475)
..|+..--..|..+....|+..+|...|.+... |+ .-|....-.+.++....+++.+|...+++. ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457777677788888899999999999988887 54 456677777788888889999998888887 1112 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
-..+...+...|.+..|+..|+.+....|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455778888999999999999999988774 34445556677888887777665555443
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.31 Score=45.33 Aligned_cols=282 Identities=20% Similarity=0.163 Sum_probs=182.3
Q ss_pred HHHHHHHHHhCC-CCHHHHHHHHhccC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 038542 48 QNTLVHMYGSCE-GGIELGRKVFDEMS---ERDSVSWSAMIGG--YARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVL 119 (475)
Q Consensus 48 ~~~li~~~~~~g-g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 119 (475)
|.+|-.++.-.| |+-..|++.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 444444443322 37777877765543 2344444444433 34569999999999999862 3322 233344
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChh--HHHHHHHHHHH--
Q 038542 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-----GRTIV--SWTSVIAGLAM-- 190 (475)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~-- 190 (475)
-...+.|+.+.|.++-+..-.... .-...+.+++...+..|+|+.|+++.+.-. ++|+. .-..|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 445678899988888877765532 245577889999999999999999998654 34442 22233333221
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 191 -HGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 191 -~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
.-+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+. .|.+..+.. ..+.+.|+. +
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a 311 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--A 311 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--H
Confidence 2345556555554444 5677543 234457889999999999999999864 455443332 223455543 3
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH-hccChhHHHHHHHHHH
Q 038542 269 HEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA-KLLRWEKKTKIREVMD 342 (475)
Q Consensus 269 ~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 342 (475)
.+-+++. .++| +..+..++..+-...|++..|..-.+.+....|. ...|..|.++-. ..|+-.++.+.+.+-.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 2222222 3445 5677777888889999999999999999888885 578888888764 4499888888876554
Q ss_pred h
Q 038542 343 K 343 (475)
Q Consensus 343 ~ 343 (475)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 4
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.015 Score=45.28 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCchHHHHHHHHHhcc
Q 038542 258 MLCRSGRVKEAHEFIQKM---PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPM---HESNYVLLSHIYAKLL 329 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 329 (475)
++-..|+.++|..+|++. +.... ...+-.+..++...|++++|..++++.....|+ +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 22211 223334455555556666666666555555444 3333444444555556
Q ss_pred ChhHHHHHHH
Q 038542 330 RWEKKTKIRE 339 (475)
Q Consensus 330 ~~~~a~~~~~ 339 (475)
++++|...+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 6666555543
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.92 E-value=0.029 Score=44.72 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch-HHHHHHHHHhcc
Q 038542 256 VDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN-YVLLSHIYAKLL 329 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g 329 (475)
.....+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++.+ |.....+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778999999998888 3333 44556678999999999999999999999999988763 555555554433
Q ss_pred ChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccC
Q 038542 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 396 (475)
..+.. +..+ ...+.......+++..|++++..-.+.-|.||
T Consensus 97 ~~~~~---~~~~-----------------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 97 QDEGS---LQSF-----------------------FRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhhhH---Hhhh-----------------------cccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 22211 1111 11223334577888888888877666655554
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.19 Score=41.71 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=23.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
.+..+....|+..+|...|++....-+..|..+.-.+.++....++...|...+++
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34444444444444444444444333333443444444444444444444444443
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.89 E-value=0.021 Score=46.69 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...++..+...|+++.|...++++...+|.+...|..++.+|...|+...|.++++.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566778888999999999999999999999999999999999999999999999998853
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.16 Score=50.67 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH--HHHHH--H--HHHHhccCChHHHHHH
Q 038542 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDE--ITMVT--V--LSACTDLGALEVGKWV 134 (475)
Q Consensus 62 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~--l--l~~~~~~~~~~~a~~~ 134 (475)
+++|.+..+.- |-+..|..+...-.+.-.++-|...|-+.... |++.-. .|..+ + ....+--|.+++|+++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 45555554442 34456666665555555555555555444321 221100 00000 0 0111224566666666
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--T---IVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
+-.+-+.. .-|.++.+.|||-...++++.-... | ..+|+.+...++....+++|.+.|..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554332 2356666667776666666543221 1 13455555555555555555555443
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.38 Score=43.03 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHhccCChHHHHHHHHHHHHcC
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TM---VTVLSACTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (475)
+...+-.....+.+.|++++|.+.|+++... -|+.. .- -.+..++.+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444445566667778888888888888764 33322 21 234455677777888887777777654
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.75 E-value=0.00098 Score=38.85 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
++++++.+|+++.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0062 Score=42.89 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
..|.+.+++++|.+.++.+ ...| ++..|......+...|++++|.+.+++..+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678888888888888887 4445 567777888888999999999999999999988765443
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.23 Score=49.04 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCCCcHHHHHH--HHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 13 YPFVLKACAGIGDLNLGKSV--HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
++..=++|.+.++..--+-+ ++++.++|-.|+... +...++-.| .+.+|-++|.+ +
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~g-KF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQG-KFHEAAKLFKR------------------S 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhh-hHHHHHHHHHH------------------c
Confidence 34444555555554433222 344555665566543 334444556 78888887754 4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH-
Q 038542 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL- 169 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~- 169 (475)
|....|+++|..|+-. -...-+...|..++-+.+.++-.+.. .++.--.+-..++..+|+.++|..+
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh
Confidence 4455555555555421 11222333444443333332221110 0110112233444555555555544
Q ss_pred ------------HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 170 ------------FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 170 ------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
-.++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-+
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 33333334455555555566667778888888887542 357778888999999998877
Q ss_pred HhhhhcCCCCChhH-H----------HHHHHHHHHcCCHHHHHHHHHhC
Q 038542 238 SMKNDFGIIPKIEH-Y----------GCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 238 ~m~~~~~~~p~~~~-~----------~~li~~~~~~g~~~~A~~~~~~m 275 (475)
..-+ ..||+.. | .-.-.+|.++|+-.||.++++++
T Consensus 798 ~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 798 KHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hCcc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 6553 3444321 1 11223455666666666666655
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.70 E-value=0.003 Score=39.39 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
.+|..+..+|...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999888776653
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.01 Score=56.47 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP----IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566777777777777777777777774 555643 34777777777777777777777777776321 121111
Q ss_pred H--HHHhccChhHHHHHHHHHHhCCCc
Q 038542 323 H--IYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 323 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
. .+....+.++..++++...+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223344666666666666643
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.63 E-value=0.049 Score=49.15 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLI 288 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li 288 (475)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ +..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434445666666666666665321111 1234556666666777777777766666 2222 244455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
..+...|+.+.|...++++++..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667778888888888888888888754
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.56 E-value=0.037 Score=43.62 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
..|+..+..+++.+|+..|++..|.++++...+.|+++-+...|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456777777777777777777777777777777677666666666666543
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.19 Score=45.26 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHhC-CCCC-CHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---GRVKEAHEFIQKM-PIEA-NPIIW 284 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p-~~~~~ 284 (475)
+-|...|..|..+|...|+.+.|..-|....+ -..+++..+..+..++... ....++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45667777788888888888888887777765 3334555555555554432 2345677888877 4455 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.-|...+...|++.+|...|+.|++..|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 667778888889999999999888888765
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.46 E-value=0.52 Score=40.90 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
.+-.....+.+.|++.+|.+.|+++...-... -....-.+..++-+.|+++.|...++..++.-......-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 33444556667777777777777776542111 1223344556666777777777777776665322111112211111
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 157 FAKCGDVDKALKLFRSMNGRTI-------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
.+........ + ...+|. ..+..++.-|=.+....+|...+..+... .-.. -..+..-|.+.|.+
T Consensus 87 ~~~~~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-H
T ss_pred HHHHHhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccH
Confidence 1111111111 0 111111 23444555555555555555544444331 0011 11245566777777
Q ss_pred HHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 268 (475)
..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777764322221 13445556666666665533
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.39 Score=42.27 Aligned_cols=232 Identities=14% Similarity=0.077 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hH-HHHHHHHHHHHcCCCCCccHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC-TDLGA-LE-VGKWVESFIEKQMVNRSVGLCNA 152 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~ 152 (475)
....|+.-+.++++....++|..=+.-..+.. .||.. |...=..+ .+.|. +. ..+.+|..+... .|+ -++.
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lgn--pqes 141 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LGN--PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cCC--cHHH
Confidence 34567777888888888888776655554432 22211 00000000 11221 11 123334444332 122 2456
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNG--RTI--------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
|...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 66666655445555555543322 222 23355666666677777888888888887666677778888888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH-----HHHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV-----DMLCRSGRVKEAHEFIQKMPIE-A-NPIIWRTLISACCARG 295 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 295 (475)
-.+.|+.+.|..+|+...+. .-+.+..+.+.++ ..|.-++++.+|...+++.+.. | |+..-|+=.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88889999999998877764 3333333333333 3455567777888888777322 2 3333333222333457
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 038542 296 ELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~ 314 (475)
+...|.+..+.+.+..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 7778888888888777654
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=0.8 Score=42.74 Aligned_cols=208 Identities=12% Similarity=0.066 Sum_probs=132.1
Q ss_pred CHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---ccCChHHH
Q 038542 61 GIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEI--TMVTVLSACT---DLGALEVG 131 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~---~~~~~~~a 131 (475)
+.+.|...-++..+ | =.-.|.+.+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-. -..+...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 55555554444332 1 23467889999999999999999998776543 344433 2233443321 12244555
Q ss_pred HHHHHHHHHcCCCCCccH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC
Q 038542 132 KWVESFIEKQMVNRSVGL-CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GV 209 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 209 (475)
...-.+..| +.|+..- --.-..++.+.|++.++-.+++.+-+.....- +...|....-.+.++.-+++.... .+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 555555444 4555432 22334788999999999999998864333221 223444444444555555554332 25
Q ss_pred CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 038542 210 PPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR-SGRVKEAHEFIQKM 275 (475)
Q Consensus 210 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 275 (475)
+|| ......+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 665 4566677888888999988887666655 558888899988887665 49999999998877
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.41 E-value=0.13 Score=40.09 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=82.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 244555555544444444444555555544422222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 269 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
...+-.++ .+.......++++..+|+-|.-.+++..+.+.+..++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234455667888999999999999999998766667888999999999999999999999999999975
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.33 E-value=0.54 Score=40.78 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 335 (475)
+..-|.+.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456688999999999999999999887644 4567888999999888544
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.28 E-value=0.062 Score=42.35 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|..++..++.++++.|+++....+++.. +|+.++...-. +. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4567778888888888888877777544 35444321100 00 011115667777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCchHHHHHHHH
Q 038542 292 CARGELKLAESITKRLIGNE--PMHESNYVLLSHIY 325 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 325 (475)
+..|++..|.++.+...+.- |.+...|..|++-.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777776654 23334555555433
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.01 Score=42.39 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhccChhHHHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++..++.+|...|++++|.+.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444555444444443
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.063 Score=50.11 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++..|...+.+.+++..|++...+.++.+|+|..+...-..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466778888899999999999999999999999999999999999999999999999998863
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.10 E-value=0.058 Score=47.68 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------
Q 038542 165 KALKLFRSMN--GRTIVSWTSVIAGLAMH-----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---------- 227 (475)
Q Consensus 165 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 227 (475)
..++.|...+ ++|..+|-+++..|... +..+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888888888888654 566777778899999999999999999998875532
Q ss_pred ------CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 038542 228 ------LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV-KEAHEFIQKM 275 (475)
Q Consensus 228 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 275 (475)
+-+-++.++++|.. +|+.||-++-..|++++++.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 33457899999998 69999999999999999998864 3444554444
No 223
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.04 E-value=2.1 Score=45.87 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHH
Q 038542 81 SAMIGGYARLG--LSTDAIDLFRQMQI 105 (475)
Q Consensus 81 ~~li~~~~~~g--~~~~A~~~~~~m~~ 105 (475)
-.+|.+|++.+ ..++|+....+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35677788777 66677777666664
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.03 E-value=0.088 Score=42.93 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChhH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN----DFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 251 (475)
...++..+...|++++|+.+.+.+.... +-|...|..++.++...|+...|.++|+.+.+ ++|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777666653 44566667777777777777777766665542 3466666544
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.011 Score=42.20 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-------P-IEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888999999999999999999887 2 1233 5678889999999999999999999865
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=2.2 Score=43.34 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSER--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--------- 107 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------- 107 (475)
..+|..+..--..+| +.+.|..+.+.=+.. +..-+..-+.-..+.|+++-...++..+.+.-
T Consensus 507 ~iSy~~iA~~Ay~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 507 GISYAAIARRAYQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred ceeHHHHHHHHHhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777 999999988764431 33445566677777888888777777665421
Q ss_pred -CCC-CHHHHHHHHH---------HHhccCChHHHHHHHHHH---HHcCCCCCccHHHHHHHHHHhcCCHHHH-------
Q 038542 108 -VCP-DEITMVTVLS---------ACTDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKA------- 166 (475)
Q Consensus 108 -~~p-~~~t~~~ll~---------~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~li~~y~~~g~~~~A------- 166 (475)
..| ....|.-+++ .|-...+......++-+- .+. +.+-........+.+.+.....-.
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1112222222 111122222222222111 011 122222333445555554442211
Q ss_pred ---HHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 167 ---LKLFRSMNGR-----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 167 ---~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
..+++.+... .--+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-++
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1222222211 11244555666778899999998877764 58888888889999999999988876665
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
++. +.-|.-.+..+.+.|+.+||.+.+-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 543 4456678889999999999999999884332 456778888999888776644
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.86 E-value=0.65 Score=37.44 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=55.9
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
.....++..+...+.+.....+++.+.+.+ ..+...++.++..|++.. .....+.+.. ..+.......++.|.+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 344567777777778888888888888776 467778888888888754 4445555542 12233334455555555
Q ss_pred CChhHHHHHHHHH
Q 038542 91 GLSTDAIDLFRQM 103 (475)
Q Consensus 91 g~~~~A~~~~~~m 103 (475)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6555555555554
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.2 Score=38.82 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCchHHH
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMP-------IEANP-IIWRTLISACCARGELKLAESITKRLIGN----EPMHESNYVL 320 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 320 (475)
...-..|.+..++++|-..|.+-+ -.|+. ..|...|-.+.-..++..|++.++.--+. +|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445666667766665555441 11222 23444455555666788888888775443 2555666777
Q ss_pred HHHHHHhccChhHHHHHH
Q 038542 321 LSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~ 338 (475)
|+.+| ..|+.+++.++.
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 77776 456777766554
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.70 E-value=0.079 Score=50.64 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI----EHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+.+...++.+..+|...|++++|...|+...+ +.|+. ..|..+..+|...|++++|...+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567888888899999999999999988775 35553 34888888999999999999888887
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=1.6 Score=39.37 Aligned_cols=168 Identities=11% Similarity=0.047 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
...+++++...+....--.-.......|+..+|..+|....... +-+...-..+..+|...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44455555544422222223345677899999999999888763 233445567888899999999999999887653 1
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCchHHHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE--PMHESNYVLL 321 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 321 (475)
-.........-|..+.+.....+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11112222344566677666666666666664456 67777778888889999999988777776554 4455677788
Q ss_pred HHHHHhccChhHH
Q 038542 322 SHIYAKLLRWEKK 334 (475)
Q Consensus 322 ~~~~~~~g~~~~a 334 (475)
+..+.-.|.-+.+
T Consensus 279 le~f~~~g~~Dp~ 291 (304)
T COG3118 279 LELFEAFGPADPL 291 (304)
T ss_pred HHHHHhcCCCCHH
Confidence 8888777744443
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.086 Score=49.13 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH----cCC-CCCccHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCC--hhH
Q 038542 115 MVTVLSACTDLGALEVGKWVESFIEK----QMV-NRSVGLCNALIDMFAKCGDVDKALKLFRSM-------NGRT--IVS 180 (475)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~--~~~ 180 (475)
|..+-+.|.-.|+++.|...|+.-.. -|- ......+..|.++|.-.|+++.|.+.|+.. ..+. ..+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444556778888777765432 121 112345666778888888888888777643 2332 245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLE----AG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
.-+|...|.-...+++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55677777777778888887766432 11 12234567788888888888888877665544
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=0.95 Score=36.47 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=20.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
.++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444455555555555555444 2344455555555544
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.54 E-value=2.3 Score=40.34 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.|-..+.+++.++.-.|+.+.|.+..+.|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4556667778888888888888888888876
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.12 Score=45.83 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 321 (475)
|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+..|++ +..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444333 445566666655554 223333333 6666666777777777776666654433 3445556
Q ss_pred HHHHHhccChhHHHHHHHHHHh
Q 038542 322 SHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+..+.|+.++|..+++.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666777777777666654
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.38 E-value=2.7 Score=40.24 Aligned_cols=316 Identities=13% Similarity=0.074 Sum_probs=170.4
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
..+......|.+.+|+.+++.+...=++ =++.+||.++-++++.= +-++ -+.+...=..-|.-||..|.+.
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--fLEl---~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--FLEL---KESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--HHHH---HHhcccccChHHHHHHHHHHHH
Confidence 3456677889999999999888765433 67888998888887643 1111 1111111111233333333221
Q ss_pred C-------------------------------ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHH
Q 038542 91 G-------------------------------LSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFI 138 (475)
Q Consensus 91 g-------------------------------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 138 (475)
= +..--++++....+.-+.|+.. ....+...+.+ +.+++..+.+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 1 1111122222223333445433 22333333333 555555555554
Q ss_pred HHcCCCC----CccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChh-------HHHHHHHHHH----HcCChHHHHHHH
Q 038542 139 EKQMVNR----SVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV-------SWTSVIAGLA----MHGRGLEAVALF 201 (475)
Q Consensus 139 ~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~l~ 201 (475)
....+.+ =..++..++....+.++...|...+.-+. +|+.. +-.++-+..+ ..-+...=+.+|
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4332111 13356667777788888888877776554 33221 0111112222 112233445566
Q ss_pred HHHHHcCCCCCHH-HHHHHH---HHHhcCCC-HHHHHHHHHHhhhhcCCCCChhHHHHHH----HHHHHc---CCH---H
Q 038542 202 EEMLEAGVPPDDV-AFVGLL---SACSHCGL-VDKGREYFDSMKNDFGIIPKIEHYGCMV----DMLCRS---GRV---K 266 (475)
Q Consensus 202 ~~m~~~g~~p~~~-t~~~ll---~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li----~~~~~~---g~~---~ 266 (475)
+......+ |.. .-..|+ .-+-+.|. -+.|.++++.+.+- -.-|...-|.+. ..|.++ ..+ -
T Consensus 366 e~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 366 EEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66655432 221 111122 22334444 77888888887752 122333222222 122221 112 2
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKMPIEA----NPIIWRTLISA--CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m~~~p----~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
+-..++++.|+.| +...-|.|.+| +..+|++.++.-.-..+.+..| ++.+|..++-+.....++++|...+..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3344555667666 34455666655 5679999999999999999999 789999999999999999999999976
Q ss_pred HH
Q 038542 341 MD 342 (475)
Q Consensus 341 m~ 342 (475)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 53
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.36 E-value=1.7 Score=37.70 Aligned_cols=194 Identities=20% Similarity=0.153 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG-----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS- 221 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 221 (475)
..+......+...+++..+...+..... .....+......+...+....+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444555555555555555555554321 2233444444555555556666666666555332221 11111222
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGI--IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN--PIIWRTLISACCARGE 296 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~ 296 (475)
.+...|+++.+...+...... .. ......+......+...++.+++...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 556666666666666665321 11 112233333333455566666666666665 22222 4556666666666667
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++.|...+.......|.....+..+...+...+.++.+...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777776665444455555555555566666666655544
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.34 E-value=0.3 Score=39.97 Aligned_cols=93 Identities=12% Similarity=-0.025 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
-....-+-+.|++++|..+|+-+...+ .-|..-+..|...+-..++++.|...|......+. .|+...--...+|...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 334445566788888888887776643 22444445555566677778888777777665543 2333344456777777
Q ss_pred CCHHHHHHHHHhcCC
Q 038542 161 GDVDKALKLFRSMNG 175 (475)
Q Consensus 161 g~~~~A~~~~~~~~~ 175 (475)
|+.+.|+..|.....
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777766543
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.31 Score=45.69 Aligned_cols=94 Identities=21% Similarity=0.139 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+.-+|.+.+++.+|.+..+.. ... +|+...--=..+|...|+++.|+..|+++++.+|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778888999999998888776 333 4677666677899999999999999999999999998888888777766
Q ss_pred ccChhHH-HHHHHHHHh
Q 038542 328 LLRWEKK-TKIREVMDK 343 (475)
Q Consensus 328 ~g~~~~a-~~~~~~m~~ 343 (475)
..+..+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6655544 778888865
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.19 E-value=0.23 Score=38.64 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC---chHHHHHHHHHhccCh
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE-PMHE---SNYVLLSHIYAKLLRW 331 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 331 (475)
+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|..-+++.+++. |... .+|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 566778888888888776 3333 56778888888888888888888888887764 3322 2466667778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 038542 332 EKKTKIREVMDKRGM 346 (475)
Q Consensus 332 ~~a~~~~~~m~~~~~ 346 (475)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.19 E-value=0.18 Score=44.66 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHhccC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 038542 64 LGRKVFDEMS--ERDSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG---------- 126 (475)
Q Consensus 64 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 126 (475)
-.++.|.... ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|..||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56888888888887654 455666677888999999999999999998875532
Q ss_pred ------ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC-HHHHHHHHHhc
Q 038542 127 ------ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-VDKALKLFRSM 173 (475)
Q Consensus 127 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~ 173 (475)
+-..+..++++|...|+-||..+-..|++++++.|- ..+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 335678899999999999999999999999988775 33444444444
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.18 E-value=0.55 Score=45.94 Aligned_cols=132 Identities=16% Similarity=0.272 Sum_probs=79.1
Q ss_pred HHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH
Q 038542 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
..-.|+++++.++...-. -..+ | ..-.+.++.-+.+.|..+.|+++...-.. -.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 345677777666554111 1112 2 33466677777777888887776443322 245566788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 267 ~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|.++.++.. +...|..|.......|+++.|++.+++. .-+..|+-.|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8877776653 6778888888888888888888888763 346677777778888777777766666555
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.14 E-value=0.68 Score=45.29 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=64.5
Q ss_pred HcCCCcHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHH
Q 038542 21 AGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL 99 (475)
Q Consensus 21 ~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 99 (475)
.-.++++.+.+..+.-. -..++ ....+.++..+-+.| -.+.|+++-..- ..-.....+.|+.+.|.++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G-~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKG-YPELALQFVTDP--------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT--HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCC-CHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHH
Confidence 34566666544443110 00111 233555666555555 666666653221 1123334455555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 038542 100 FRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179 (475)
Q Consensus 100 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 179 (475)
.++ .++...|..|...+...|+++.|+..+.+.. -+..|+-.|.-.|+.++-.++.+....++
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 321 2244455555555555555555555554432 13344555555555555444444433221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
-+|....++...|+.++..+++.
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12333333444455555554443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.88 Score=41.56 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCCHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV----GLLSACSHCGLVDKG 232 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a 232 (475)
.|+..+|-..++++.+ .|..+|+--=.++.-.|+.+.-...+++.... -.||...|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444432 24455555555555555555555555555433 122322111 122233345555555
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
++.-++..+ -.+.|...-.++...+...|++.++.++..+-
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555444432 11223334444455555555555555555544
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.82 E-value=1.1 Score=42.74 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHH-HHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSW-TSVIAG 187 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~ 187 (475)
...|...+++-.+..-++.|+.+|-++.+.| +.+++.++++++..|+ .|+..-|.++|+--. -+|...| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4456667777777777888888888888777 5677788888887665 467777788877432 2344333 334555
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
+...++-+.|..+|+..... +..+ ...|..++..-+.-|++..+..+=+.|... -|...+.......|+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHh
Confidence 66677778888888755433 2222 346777887777788887777776666653 344433344444443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.78 E-value=4.6 Score=40.11 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-------ChhHHHHHHHHHHHcCChhHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-------DSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A 96 (475)
.+.+.+.+++..+.++ -|+...|...-.-+.+..|+++.|.+.|++.... ....+-.+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556677777777665 5666666555444444444777777777754321 223444455556667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCh-------HHHHHHHHHHH
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSAC-TDLGAL-------EVGKWVESFIE 139 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~-------~~a~~~~~~~~ 139 (475)
.+.|..+.+.. .-...+|.-+..+| ...++. ++|..++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77777777643 22344444444433 344555 55555555543
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.76 E-value=0.47 Score=43.73 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGI--IP--KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIW--- 284 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~--- 284 (475)
+..++...+.++++++.|+...+--.- .| ...+|..|...|.+..++++|.-+..+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444444555555555555544431010 11 2245555666666666655554443332 222111111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 285 --RTLISACCARGELKLAESITKRLIGN----E--PMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 285 --~~li~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.-+..++...|..-.|.+..++..++ + |........+.++|...|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 12334555555555555555554322 1 2222233455556666666555544443
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.72 E-value=4.2 Score=38.97 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIW-RTLISA 290 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~~ 290 (475)
..|...+++..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|.++|+-- ..-||...| +..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777777788888888888775 5 5677778888777665 45666777777654 223444333 445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 291 CCARGELKLAESITKRLIGNEPM--HESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+...++-..|..+|+...+.-.. -...|..++.--..-|+...+..+-++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 66677777777777754432211 13456666666666666666555555543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.66 E-value=2.7 Score=41.77 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDD-----VAFVGLLSACSH----CGLVDKGREYFDSMKNDFGIIPKIE 250 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 250 (475)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3345555566789999999988876543 22111 223333433333 46788899999999874 45554
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH-H
Q 038542 251 HYGC-MVDMLCRSGRVKEAHEFIQKMPI-E-----ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL-S 322 (475)
Q Consensus 251 ~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 322 (475)
.|.. -...+...|++++|.+.|++.-. + .....+--+...+....++++|...|.++.+...-+...|..+ .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4443 34566778999999999997621 1 1223344456667788999999999999999876655666544 4
Q ss_pred HHHHhccCh-------hHHHHHHHHHHhC
Q 038542 323 HIYAKLLRW-------EKKTKIREVMDKR 344 (475)
Q Consensus 323 ~~~~~~g~~-------~~a~~~~~~m~~~ 344 (475)
-+|...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455677888 8888888877553
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.55 E-value=2.8 Score=36.23 Aligned_cols=199 Identities=16% Similarity=0.089 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH-H
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIA-G 187 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 187 (475)
..+......+...+.+..+...+...... ........+..+...+...+++..+...+...... +...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555554444431 12223334444555555555566666666655431 1122222222 5
Q ss_pred HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCC
Q 038542 188 LAMHGRGLEAVALFEEMLEAGV--PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 264 (475)
+...|+.+.|...+.+...... ......+......+...++.+.+...+..... .... ....+..+...+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 6777778888877777754211 11233344444446667788888888887775 3333 35667777778888888
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 265 VKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888777 33443 445555555555667788999888888888775
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.55 E-value=5.5 Score=39.60 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=161.3
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChhH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE------RDSVSWSAMIGGYARLGLSTD 95 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~ 95 (475)
+.|..+.+..+|+..++ |++.+...|...+.......|+.+..++.|+.... .+..-|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 45777888888888776 46777788888877777766688888888877653 256678888887778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----cCChHHHHHHHHHHHH--------------------cC--------
Q 038542 96 AIDLFRQMQISGVCPDEITMVTVLSACTD-----LGALEVGKWVESFIEK--------------------QM-------- 142 (475)
Q Consensus 96 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~--------------------~~-------- 142 (475)
...++++.++.-..-=...|......... ....+++.++-....+ .+
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 88888888763100000011111111000 1112222111111110 00
Q ss_pred ---------------------------------------C----CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-
Q 038542 143 ---------------------------------------V----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI- 178 (475)
Q Consensus 143 ---------------------------------------~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~- 178 (475)
+ +++..+|..-++.-.+.|+.+.+.-+|++..-+-.
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~ 329 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL 329 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh
Confidence 0 00112223333333333333333333333322200
Q ss_pred --hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHH
Q 038542 179 --VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHYGCM 255 (475)
Q Consensus 179 --~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 255 (475)
..|--.+.-....|+.+-|..++....+--++-...+-..-..-+-..|+.+.|..+++.+..+ . |+. ..-..-
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~ 406 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRK 406 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHH
Confidence 1111111112222444444444433333222222221111112234568999999999999885 3 543 333445
Q ss_pred HHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 256 VDMLCRSGRVKEAH---EFIQKM-PIEANPIIWRTLIS-----ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 256 i~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
+....+.|..+.+. .++... +.+-+..+...+.- .+...++.+.|..++.++.+..|++...|..+++...
T Consensus 407 ~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 407 INWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 66677888888877 444444 21222222222222 2445688999999999999999999999999988877
Q ss_pred hcc
Q 038542 327 KLL 329 (475)
Q Consensus 327 ~~g 329 (475)
..+
T Consensus 487 ~~~ 489 (577)
T KOG1258|consen 487 IQP 489 (577)
T ss_pred hCC
Confidence 665
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.44 E-value=6.4 Score=39.90 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038542 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 143 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
++.+....-.+.+++.+.|.-++|.+.|-+...|.. .+..|...+++.+|.++-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777766554422 2233444445555554443
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.24 E-value=4.3 Score=37.17 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Confidence 33333444444555555555555554
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.22 E-value=0.087 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.+|..+...+...|++++|...++++++.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888775
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.97 E-value=0.15 Score=29.30 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888887754
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=6 Score=37.51 Aligned_cols=116 Identities=11% Similarity=-0.039 Sum_probs=61.7
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHH--HHHHhcCCHHHHHHHHHhcCCCChh---------------HHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALI--DMFAKCGDVDKALKLFRSMNGRTIV---------------SWTSV 184 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 184 (475)
+...++.+.|.++-..+.+... ...+..++ .++--.++.++|...|++-..-|.. .|..=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 4567777777777666665431 11222222 2333456777787777776543321 12222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..-..+.|++.+|.+.|.+.+.. +.+|+...|.....+..+.|+.++|+.--+...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 22334566666666666666542 233444455555555556666666665554443
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.68 E-value=0.61 Score=36.35 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=44.3
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPI---IWRTLISACCARG 295 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~li~~~~~~g 295 (475)
.+..|+++.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. +-+ +.. .|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445555555555555443 22334445555555555555555555554444 111 111 1222223456667
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 038542 296 ELKLAESITKRLIGNEPM 313 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~ 313 (475)
+.+.|..-|+..-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777776666643
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.54 E-value=6.9 Score=37.10 Aligned_cols=150 Identities=9% Similarity=-0.006 Sum_probs=81.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hh
Q 038542 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK--IE 250 (475)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 250 (475)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888899999999999999998887754211 2233334455566778888888888777762 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 251 HYGCMVDMLCRSGRVKEAHEF-IQKMPIEANPIIWRTLISACCAR------GELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
....+...+.. ..+..... ........-...+..+..-+... +..+.+...++.+.+..|.....|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112222233333333 77888899999999998887777777766
Q ss_pred HHHhc
Q 038542 324 IYAKL 328 (475)
Q Consensus 324 ~~~~~ 328 (475)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66443
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.47 E-value=7.6 Score=37.36 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=155.2
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-ChhHHHHHHHHH--HHcC
Q 038542 21 AGIGDLNLGKSVHGAVLKFQFGDD------IHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGGY--ARLG 91 (475)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g 91 (475)
-+.+++.++..+|..+.+.. ..+ ....+.++++|... +++..........+. ....|-.+..++ -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 46789999999999988763 222 23457788888874 577766666555542 133455555443 3678
Q ss_pred ChhHHHHHHHHHHHC--CCCCC------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC----CCccHHHHH
Q 038542 92 LSTDAIDLFRQMQIS--GVCPD------------EITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVGLCNAL 153 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l 153 (475)
.+.+|++.+..-.+. +-.|. -.-=...+..+...|.+.+|+.+++++...=++ .+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988877654 22221 111133455677899999999999888755443 788899998
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC--C
Q 038542 154 IDMFAKCGDVDKALKLFRSMNG---RTI-VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC--G 227 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--g 227 (475)
+-+++++ .|-++.+ -|+ .-|--||..|.+.=+.-++.. =..+-|-...+..++....-. .
T Consensus 174 vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~------Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 174 VLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP------YEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch------HHhhCcHHHHHHHHHHHHHhCCHh
Confidence 8888764 3333221 122 345555555544321111100 001233333333333322211 1
Q ss_pred CHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHH
Q 038542 228 LVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM---PIEA----NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~li~~~~~~g~~~~ 299 (475)
...--.+++....+ +-+.|+- -....|+..+.. +.+++..+-+.+ .+++ -..++..++..+.+.++...
T Consensus 240 ~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 240 RLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 12222333333333 2444542 233344444443 445555554444 1111 24567888888888999999
Q ss_pred HHHHHHHHHhCCCCC
Q 038542 300 AESITKRLIGNEPMH 314 (475)
Q Consensus 300 a~~~~~~~~~~~p~~ 314 (475)
|.+.+..+.-.+|..
T Consensus 317 a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 317 AKQYLALLKILDPRI 331 (549)
T ss_pred HHHHHHHHHhcCCcc
Confidence 998888888887765
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.36 E-value=2.4 Score=39.14 Aligned_cols=130 Identities=8% Similarity=0.016 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh--CC---CCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCCh
Q 038542 26 LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--CE---GGIELGRKVFDEMSE-------RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 26 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g---g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~ 93 (475)
++....+++.+.+.|+..+..+|-+..-.... .. .....|..+|+.|++ ++-.++.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999888777664443333 11 136678999999985 245566666555 33333
Q ss_pred ----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 94 ----TDAIDLFRQMQISGVCPDEI--TMVTVLSACTDLGA--LEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 94 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
+.+...|+.+...|...+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 56778888888888776433 33444444433333 347788888999999888887777665433
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=2.2 Score=38.09 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
--|..++...|++++|...|..+ |-.| -+...-.|.......|+.++|...|+++.+..|..+
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 33444444444444444444443 2222 223444455555555666666666666665555543
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.31 E-value=2.4 Score=33.94 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=56.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGV--PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.....+.|++++|.+.|+.+...-. +-....-..|+.+|.+.+++++|...++...+-+--.|+ ..|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556666666666666655410 112234445666666666666666666666654222333 2344444443332
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 263 GRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 263 g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
...+. .|..+ +.. ...+....|...|+++++.-|++.
T Consensus 96 ~~~~~---~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22211 11111 111 111234577777888888778753
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.17 E-value=5.8 Score=35.16 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..-|.+.|.+-.|..-++++++.-|.... .+..+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456688999999999999999988765544 456677889999999999888766654
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=12 Score=38.84 Aligned_cols=181 Identities=13% Similarity=0.013 Sum_probs=107.9
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHH----hcC-----CC-------ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLK----FQF-----GD-------DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-----~~-------~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~ 74 (475)
...+.++.++...+.+-.=.-+++.+.+ .+. .. .......-+++..+.. -++.|..+-..-..
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~-ly~~Ai~LAk~~~~ 362 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKN-LYKVAINLAKSQHL 362 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhh-hHHHHHHHHHhcCC
Confidence 3456677777777765544444444332 220 01 1122345666677766 78888887665443
Q ss_pred CChhHHHHH----HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 75 RDSVSWSAM----IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 75 ~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
+..+-..+ ..-+.+.|++++|...|-+-... +.| +.++.-+.......+-..+++.+.+.|+. +...-
T Consensus 363 -d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 363 -DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 22332233 34455789999999888776543 233 23555566666677777788888888876 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHcCChHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGRTIV--SWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~ 201 (475)
+.|+++|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 788999999999988888777665 2211 1233344444444445544443
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.15 E-value=3 Score=40.54 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPM--HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
..|...+.+.|+.++|.+.++++.+..|. +......|+.++...+.+.++..++.+-.+...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 44566666777778888777777766543 334566777777777777777777776554333
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.14 E-value=1.3 Score=36.49 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHH-H
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA-L 153 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 153 (475)
+-..|..-+. +++.+..++|+.-|..+...|...-+. ..-.......+.|+-..|...|+++-+....|.+.--.+ |
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 345666777777777777665432111 111122234566777777777777765443333221111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHhcCCC-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 154 --IDMFAKCGDVDKALKLFRSMNGR-TI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 154 --i~~y~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.-.+...|.+++.....+-+..+ +. ..-.+|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12344567777777666665432 21 234455556667777777777777766543334
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=92.95 E-value=6.7 Score=38.02 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=101.3
Q ss_pred hHH--HHHHHHHHHcC-----ChHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHhc---------CCCHHHHHHHHHHhh
Q 038542 179 VSW--TSVIAGLAMHG-----RGLEAVALFEEMLEA-GVPPDD-VAFVGLLSACSH---------CGLVDKGREYFDSMK 240 (475)
Q Consensus 179 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~ 240 (475)
..| ...+.+..... ..+.|+.+|.+.... .+.|+- ..|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 345788899998821 245553 344433333221 233455666665555
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
+ --+-|+.....+..++.-.++++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.+++.+++.|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 23446677777777778888899999999998 56664 45566666667778999999999999999998765432
Q ss_pred --HHHHHHHHhccChhHHHHHH
Q 038542 319 --VLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 319 --~~l~~~~~~~g~~~~a~~~~ 338 (475)
...+..|... ..++|.+++
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHH
Confidence 2344456554 466676666
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.82 E-value=24 Score=41.34 Aligned_cols=311 Identities=12% Similarity=0.021 Sum_probs=172.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHh-ccCCCChhHHHHHHHHHHH
Q 038542 15 FVLKACAGIGDLNLGKSVHGAV----LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD-EMSERDSVSWSAMIGGYAR 89 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~-~~~~~~~~~~~~li~~~~~ 89 (475)
++..+-.+.+.+..|...++.- .+. ......+-.+...|+..+ ++|....+.. ....++. ..-|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIH-DPDGVEGVSARRFADPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhcCccH---HHHHHHHHh
Confidence 3444556677778888777773 111 122234445555888888 8888777766 3334433 234555667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHH-HHHHHHHhcCCHHHHHH
Q 038542 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN-ALIDMFAKCGDVDKALK 168 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~~A~~ 168 (475)
.|++..|...|+.+.+.+ ++...+++.++..-...+.++......+-.... ..+....++ .=+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998763 333667888888777777777766644444332 222333333 33455577888888777
Q ss_pred HHHhcCCCChhHHHHH-H-HHHHHc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH------
Q 038542 169 LFRSMNGRTIVSWTSV-I-AGLAMH--GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS------ 238 (475)
Q Consensus 169 ~~~~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~------ 238 (475)
... ..+..+|.+. + ....+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-.
T Consensus 1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHH
Confidence 766 5566666665 2 222222 22222223444443321111 1122222211111111110
Q ss_pred ----hhhhcCCCCChh------HHHHH---HHHHHHcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 038542 239 ----MKNDFGIIPKIE------HYGCM---VDMLCRSGRVKEAHE-FIQKMPIEA-----NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 239 ----m~~~~~~~p~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~li~~~~~~g~~~~ 299 (475)
.....+..++.. .|..- .+.+.+....--|.+ .+.....+| -..+|-...+.++..|.++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111112222221 11111 112222111111111 111111121 35689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
|...+-.+.+..+ +..+.-.+......|+-..|..+++.-.+...
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9998888877774 46788889999999999999999988876543
No 268
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.66 E-value=14 Score=38.30 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 265 VKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 265 ~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.++|...++... ...+...+..-+..-...++++.+...+..|-........-..=+.+++...|+.++|...|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555431 11122223333333335555555555555543322223334444555555556666665555554
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.58 E-value=7.1 Score=34.63 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
+..-|.+.|.+..|..-+++| +-.+ .....-.+..+|...|-.++|....+-+...-|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 345677888888887777777 1111 234455677889999999999888776666667654
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.56 E-value=0.67 Score=41.87 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..++..++..+...|+.+.+.+.++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345667788888889999999999999999999999999999999999999999999998876
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.47 E-value=5.2 Score=37.22 Aligned_cols=125 Identities=18% Similarity=0.068 Sum_probs=56.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHhcCCCHHHHHHHHHHhh---hhcCCCCChhHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGV-PP----DDVAFVGLLSACSHCGLVDKGREYFDSMK---NDFGIIPKIEHYGCM 255 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~-~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~l 255 (475)
|..++.-.+.++++++.|+....--- .. ....+..|-..|....+.++|.-+..... ..+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444445555566666555433110 11 12345555555555556655544433222 112322222222222
Q ss_pred H-----HHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 256 V-----DMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 256 i-----~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+ -+|...|.+-+|.+.-++. |.+| .......+.+.|...|+.+.|..-++.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2344445544444444332 3332 23334456666777777777666665543
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=1.8 Score=39.67 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=118.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH----HHHHHHHcCCH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC----MVDMLCRSGRV 265 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 265 (475)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++.+.. ...|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 378888898999998876 577888888888999999999999999988875 34455544433 34445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCchHHHHHHHHHhccChhHHHHHHH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM----HESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
++|++.-++. .+.| |...-.++...+-..|+++++.++..+-...-.. -...|=...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988 5555 6677778888888899999999988775433211 12245556667788899999999998
Q ss_pred HHHhCCCccCCC
Q 038542 340 VMDKRGMKKIPG 351 (475)
Q Consensus 340 ~m~~~~~~~~~~ 351 (475)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 866555555444
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=92.30 E-value=2.8 Score=40.49 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 228 LVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCR---------SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
..+.|..+|.+......+.|+- ..|..+..++.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567888888887433556653 444444433322 22345666666665 4444 7777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+++.|...|+++..++|+...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999877543
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.30 E-value=8.4 Score=34.81 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+.....|...|.+.+|.++.++++..+|.+...+..|++.++..|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446788999999999999999999999999999999999999998888777777753
No 275
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.26 E-value=0.59 Score=39.39 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 258 MLCRSGRVKEAHEFIQKM--PIEA-----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m--~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
-+.+.|++++|..-|... ..++ -...|..-..++.+.+.++.|+.-..+.++++|....+...-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 466778888888877776 1111 234555566778889999999999999999999888888888889999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038542 331 WEKKTKIREVMDKRG 345 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~ 345 (475)
+++|..-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998887643
No 276
>PRK09687 putative lyase; Provisional
Probab=92.06 E-value=9.6 Score=34.93 Aligned_cols=79 Identities=8% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS----TDAIDLFRQMQISGVCPDEITMVT 117 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ 117 (475)
.+|..+....+..+...| ..+....+..-+..+|...-...+.++.+.|+. .+++.++..+... .|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 344444444555555544 322222222222333444444445555555542 2344555444222 234443334
Q ss_pred HHHHHh
Q 038542 118 VLSACT 123 (475)
Q Consensus 118 ll~~~~ 123 (475)
.+.++.
T Consensus 111 A~~aLG 116 (280)
T PRK09687 111 AINATG 116 (280)
T ss_pred HHHHHh
Confidence 444433
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.01 E-value=3.1 Score=35.07 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRT------IVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566777777777777777777765442 13455566666666676666666665544
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.93 E-value=11 Score=35.57 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEP----MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
....+|..+...+.+.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999987652 2355666778888899999999999988877433
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.89 E-value=0.39 Score=28.14 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887744
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.78 E-value=5.3 Score=31.43 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
.-.|.+++..++..+... .+..-+|=+|.-....-+-+-..+.++.. |--.|. +..|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHHHHH
Confidence 345778888888877653 34444444443333333333333443333 322222 2234444444444
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
-.+-. +.+....-++.+...|+-+...+++..+ .-++++...-.+..||.+.|+..++.++++++-+.+
T Consensus 80 ~~~n~------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRNK------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33222 4455667788889999999888888886 356788888899999999999999999999887766
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=11 Score=39.21 Aligned_cols=179 Identities=17% Similarity=0.119 Sum_probs=108.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV--GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 191 (475)
+...-+....+...++.|..+-. ..+.+++. .......+-+.+.|++++|...|-+....-..+ .+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCH
Confidence 34455566666666666655432 33333332 223334455567788888888776654321122 255666667
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.+.-.++.+.-.+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 77777778888888887543 33345688888888888887776655442 221 11234566677777778888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 272 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777653 344444444 4457888888877653
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.66 E-value=1.6 Score=39.51 Aligned_cols=74 Identities=12% Similarity=0.245 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLE-----AGVPPDDVAFVGLL 220 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll 220 (475)
++..++..+..+|+.+.+.+.++++... +...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 5566777777777777777777776533 556777788888888887777777777654 35666655544444
Q ss_pred HH
Q 038542 221 SA 222 (475)
Q Consensus 221 ~~ 222 (475)
.+
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.19 E-value=12 Score=34.50 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHc
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACTD--LG----ALEVGKWVESFIEKQ 141 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 141 (475)
++.+.+++.|.+.|.+-+..+|.+....... .. ....+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 4556777888888888777777554433322 22 334567777777764
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=3.8 Score=35.90 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKI--EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
.|......|...|.++.|-..++...+.. ++.|+. ..|..-+..+...++...|.++ +...-..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------------~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------------YGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------------HHHhhhHh
Confidence 34445555666666666555554433210 233332 1222222233333333334333 33444556
Q ss_pred HhcCCHHHHHHHHHHHHh----C--CCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 292 CARGELKLAESITKRLIG----N--EPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~----~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
.+...+++|-..+.+-.. . -|..-..|+..+-+|.-..++..|.+.++.
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 777777777776665432 1 233345688888888888999999988854
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.90 E-value=6.4 Score=33.21 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH--H
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG--C 254 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~ 254 (475)
..+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...+++..+...+.+.........+...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778889999999999999999999887655554 3466788888889999999888887765311111111111 1
Q ss_pred HHH--HHHHcCCHHHHHHHHHhC
Q 038542 255 MVD--MLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 255 li~--~~~~~g~~~~A~~~~~~m 275 (475)
... .+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 233567888888888776
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.79 E-value=1 Score=27.80 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQIS 106 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (475)
.+|..+...|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888887775
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.69 E-value=0.4 Score=28.11 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 284 WRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
|..|...|...|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.66 E-value=4 Score=33.44 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038542 259 LCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (475)
+.+.|++.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44445555555555554
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=2.4 Score=38.55 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=72.7
Q ss_pred hcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038542 39 FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 39 ~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 109 (475)
.|.+....+...++..-.... +++++...+-.+.. | ...+|--++. .-++++++.++..=.+.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccc
Confidence 355556666677777666666 88888888777653 2 2333333333 23677999999888899999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (475)
||.+++..+++.+.+.+++..|.++.-.++...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877776543
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=13 Score=33.70 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=87.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHH---HHHHHHHHHcCCh
Q 038542 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VSW---TSVIAGLAMHGRG 194 (475)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~---~~li~~~~~~g~~ 194 (475)
.......+++.++...+......... +..+--.|..+|...|+.+.|..++..++.... ..| .+-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33457788999999999988876433 456677889999999999999999999885421 122 2223444444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 195 LEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++-.-.-|...-..+++.+.-.|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444433 34 5555556777778888888887765554442122223344444554444444
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.45 E-value=0.44 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+|..+...+...|++++|...|++..+..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888887777663
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.42 E-value=13 Score=33.29 Aligned_cols=259 Identities=17% Similarity=0.242 Sum_probs=152.1
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC----C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCC
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE----R---DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GVC 109 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 109 (475)
+-.||+..-|..-+.-+-....+++|+.-|++..+ + .-.+.-.+|..+.+.|++++.+..|.+|... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 44666665554333322222267888887777643 1 2334556788899999999999988888642 111
Q ss_pred --CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC------
Q 038542 110 --PDEITMVTVLSACTDLGALEVGKWVESFIEKQ----M-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR------ 176 (475)
Q Consensus 110 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 176 (475)
-...+.++++.-.+...+.+.-..+++.-.+. . -..--.+-+.|...|...|.+.+-.+++.++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 24557788888877777777777776654421 0 0001123356788888888888888888876421
Q ss_pred --C-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----cCCCHHHHHH-HHHHhh
Q 038542 177 --T-------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACS-----HCGLVDKGRE-YFDSMK 240 (475)
Q Consensus 177 --~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~-----~~g~~~~a~~-~~~~m~ 240 (475)
| ...|..-|..|....+-.+-..++++...-. -.|.+.. ..+++-|. +.|.+++|-. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 2467777888888888888778888765432 2344443 34555553 4677777754 444433
Q ss_pred hhcCC--CCCh---hHHHHHHHHHHHcCCHHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 241 NDFGI--IPKI---EHYGCMVDMLCRSGRVKEAHEFIQK--M-PI--EANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 241 ~~~~~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
. |.- .|.. --|-.|..++.+.|- .-|+. + |. .|.......|+.+|.. +++.+-+++++.
T Consensus 260 N-YDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 N-YDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred c-ccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 2 322 2222 234555666666552 11111 1 33 3445567778888754 455554444443
No 293
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.50 E-value=5.6 Score=29.51 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554322 22222223445667899999999999999999999977654 467888888888888887
Q ss_pred cCCCCCHHHHHH
Q 038542 207 AGVPPDDVAFVG 218 (475)
Q Consensus 207 ~g~~p~~~t~~~ 218 (475)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566665543
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.34 E-value=23 Score=34.78 Aligned_cols=179 Identities=14% Similarity=0.120 Sum_probs=125.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (475)
-++++..|.. | -+....+.+ |-...-+++..+.++..++-...+..+|...| -+...|..++..|... .
T Consensus 45 k~si~~lyis-g-~~~~s~~~l------~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~ 113 (711)
T COG1747 45 KNSIIALYIS-G-IISLSKQLL------DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-G 113 (711)
T ss_pred hhhhHHHHHH-H-HHHhhhccc------cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-C
Confidence 3455555544 3 333333333 44456678899999999999999999999865 5777888899998887 5
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCChHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI---------VSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~ 198 (475)
-++-..+++++.+..+. |+....-|+..|-+ ++.+++..+|.+...+-+ ..|.-++..- ..+.+..+
T Consensus 114 n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl 189 (711)
T COG1747 114 NEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFL 189 (711)
T ss_pred chhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHH
Confidence 56777888888888765 56666777777777 888999888887643211 3566555421 34566666
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 199 ALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 199 ~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.+..+.... |..--.+.+.-+-.-|+...++.+|++++..+.+
T Consensus 190 ~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 190 RLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 666666543 4444456666677788899999999999987665
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.34 E-value=2.6 Score=30.99 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+..+.+-| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999998885323 24456666553
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=2.1 Score=35.08 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 251 HYGCMVDML---CRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 251 ~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
..+.||..+ .+.++.+++..+++.+ -++|. ..++... .+...|++.+|.++|+.+.+..|..+..-..+..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344444443 3456777777777766 23333 3333322 2556677777777777766666655444444444
Q ss_pred HHHhccC
Q 038542 324 IYAKLLR 330 (475)
Q Consensus 324 ~~~~~g~ 330 (475)
++...|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 4444443
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.70 E-value=2.1 Score=34.42 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.++.+++..++..+.-+.|..+..-..-...+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444455555555554444444444444444444555555555555444443
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.56 E-value=6.8 Score=31.61 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=8.4
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038542 259 LCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (475)
+.+.|++++|.++|++.
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34445555555555554
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.50 E-value=1.1 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677788888888888888888888776
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=5.3 Score=36.40 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=71.4
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-R--------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.|.+....+...++..-....+++++...+-++.. + ...+|--++. .=++++++.++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555566666666667788888888777653 2 2234433332 346778888888888899999
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
|.+|+..+++.+.+.++..+|.++...|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
No 301
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.25 E-value=25 Score=33.85 Aligned_cols=63 Identities=17% Similarity=-0.010 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
...|+.-|...|++.+|.+..+++---.-.+...+..++.+..+.|+-.....+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 346788888999999998887765332234556788888888888887766666666555553
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.04 E-value=2.6 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+-| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566666677777889999999999999999999999999999887534 33336777664
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.96 E-value=17 Score=31.48 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..||-+.--+...|+++.|.+.|+...+... ....++..-.-++.-.|+++.|.+=+...-.+-.-.|-...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 4566666666677777777777777766431 1122222222233445667666654444332101112111221111
Q ss_pred HHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CchHHHHHHHHHhccC
Q 038542 259 LCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH-------ESNYVLLSHIYAKLLR 330 (475)
Q Consensus 259 ~~~~g~~~~A~~~~-~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 330 (475)
-+.-++.+|..-+ ++.. ..|..-|..-|..+.- |++. .+.+++++.....++ ..+|..|..-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233445554333 3331 2344555554444322 2211 123334443322222 3578889999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038542 331 WEKKTKIREVMDKRG 345 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~ 345 (475)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998776544
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.55 E-value=0.49 Score=38.33 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
+..+.+.+.......+++.+...+...+....+.++..|++.+..+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555566665554444445555666666666655555555444
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.03 E-value=4.5 Score=26.20 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCc
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 393 (475)
...+.-++.+.|++++|.+..+.+.+. .|...++..+-+.+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999998863 35566676666666777887774
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.98 E-value=4.7 Score=31.83 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-CCCCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCAR---GELKLAESITKRLIG-NEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..+--.+..++.+. .++++++.+++.+.+ -.|.... ....|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333444455443 356777888888886 3344333 3345666788888999998888887753
No 307
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=12 Score=37.28 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 234 (475)
....+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|.+.+. |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34456788888877766543 567788888888888888888888776654 3356666666776665444
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
+-...+++ |.. | .-.-+|...|+++++.+++.+-+.-|
T Consensus 714 la~~~~~~-g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 714 LASLAKKQ-GKN-N-----LAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh-ccc-c-----hHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444443 432 1 22335667788888888887764334
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.81 E-value=53 Score=35.95 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
.+.+|..+|+|++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34555556666666665555443 11111222244555555566665555555554
No 309
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.68 E-value=34 Score=33.64 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-I-EAN--PIIWRTLISACCA 293 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~~~~~ 293 (475)
.+..++-+.|+.++|.+.+++|.+.+...........|+.++...+.+.++..++.+-. + -|. ...|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 45556667777777777777777643222234456667777777777777777777662 1 122 2344444333222
Q ss_pred cCC---------------HHHHHHHHHHHHhCCCCC
Q 038542 294 RGE---------------LKLAESITKRLIGNEPMH 314 (475)
Q Consensus 294 ~g~---------------~~~a~~~~~~~~~~~p~~ 314 (475)
-++ -..|.+++.++.+.+|..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 222 123567788887777654
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.85 E-value=28 Score=31.86 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.7
Q ss_pred HHcCChhHHHHHHHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~ 105 (475)
.++|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356677777777766654
No 311
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.81 E-value=19 Score=29.91 Aligned_cols=137 Identities=9% Similarity=0.149 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHhC
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG--RVKEAHEFIQKM 275 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 275 (475)
+++++.+.+.+++|+...+..+++.+.+.|.+..-.+++ . +++-||.....+.+-.+.... -..-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 456666777888999999999999999998876654443 3 466677766666554444322 134456666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 276 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
+. .+..++..+...|++-+|.++.+.....+. .....++.+-.+.++...-..+++-..+++.+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 42 244566778888999999888877644332 12345566666777777767777777665543
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.80 E-value=0.5 Score=38.25 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChh
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 94 (475)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.+ +.+...++++.... .-...++..+.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 356777778888888889999988776677888999999999987 77888887774332 33344556666666666
Q ss_pred HHHHHHHHH
Q 038542 95 DAIDLFRQM 103 (475)
Q Consensus 95 ~A~~~~~~m 103 (475)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 666665554
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.70 E-value=1.9 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777788888888888888887765
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.64 E-value=5.1 Score=38.69 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=80.7
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 190 MHGRGLEAVA-LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 190 ~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
..|+...|-+ ++.-++...-.|+.+...+.+ ..+.|+++.+.+.+..... -+.....+-.+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566655544 445555544456655544444 5678889988888877665 4455667788888888889999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 269 HEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 269 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..+-..| +.+ .++.+......+....|-+|++.-.++++..+.|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888777 211 144444444445566778888888888888777543
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.63 E-value=24 Score=32.10 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 194 GLEAVALFEEMLE-AGVPPDDVAFVGLLSACSH--CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 194 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
..+|+++|+.... ..+--|......+++.... ......-.++.+.+...++-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCC-CCCCchHHHHHHHHHhcc
Q 038542 271 FIQKM----PIEANPIIWRTLISACCARGELKLAESITKR-----LIGNE-PMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 271 ~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~-p~~~~~~~~l~~~~~~~g 329 (475)
+.+.. +...|...|..+|..-...|+......+..+ +.+.+ +.++..-..|-..+.+.|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.63 E-value=2 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888877777654
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.60 E-value=49 Score=34.41 Aligned_cols=147 Identities=13% Similarity=0.119 Sum_probs=89.2
Q ss_pred cCCCcHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGD---DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
+.+.+++|...-+... |..| -..++...|+.+.-.| ++++|-...-.|-..+..-|---+.-+...++......
T Consensus 368 ~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~-~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEG-KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcc-hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 3445555555544332 3334 3457788888887777 99999998888888888888888888877776654333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------------C-------CCCCccHHHHHHHHHHh
Q 038542 99 LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------------M-------VNRSVGLCNALIDMFAK 159 (475)
Q Consensus 99 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~-------~~~~~~~~~~li~~y~~ 159 (475)
+ +.......+...|..+|..+.. .+. ..+++.+.+. . ..-+...-..|+..|..
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 2 2221112344556666655544 111 1111111110 0 01122344568999999
Q ss_pred cCCHHHHHHHHHhcCCCCh
Q 038542 160 CGDVDKALKLFRSMNGRTI 178 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~ 178 (475)
.+++.+|...+-...++++
T Consensus 518 d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred ccChHHHHHHHHhccChHH
Confidence 9999999999998887654
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.34 E-value=1.6 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+..++...|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666555553
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=25 Score=30.82 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=15.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 038542 291 CCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~ 311 (475)
-...+++.+|+.+++++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999998887544
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.69 E-value=9.4 Score=36.97 Aligned_cols=126 Identities=12% Similarity=0.011 Sum_probs=85.4
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~ 301 (475)
...|+.-.|.+-+....+.+.-.|+ +.......+...|.++.+...+... -+.....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665544444442333444 3334444567789999999998877 23345677888999999999999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
...+.|+..+-.++.....-...-...|-++++...|+++..-+-..+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999998775555544433334456688999999998887654333333
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.50 E-value=6.9 Score=33.42 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=37.6
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChH
Q 038542 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 195 (475)
++.|+ +.|...|-.+...+.-.++....+|...|. ..|.++|..++.+.. ..|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33343 344455555554444445555555555554 345555555554432 224555666666666666666
Q ss_pred HHH
Q 038542 196 EAV 198 (475)
Q Consensus 196 ~A~ 198 (475)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 553
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.25 E-value=2.2 Score=39.15 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=75.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGEL 297 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~ 297 (475)
+-|.+.|.+++|+..|..-.. ..| ++.+|..-..+|.+..++..|+.-.... .+. .-+..|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 568899999999999987664 355 8888888899999999998887655544 111 1233455555555566788
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
.+|.+-++.+++++|.+. -|-..|++.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 889999999999999853 3444455555444443
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.13 E-value=6.8 Score=29.22 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 275 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367789999999999999999999999999988755433333565544
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.99 E-value=7.2 Score=28.76 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 275 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+.+-|++.+..+-+.||.+.+++..|.++++-+...-..+...|..++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 367788888888899999999999999988877744332334454443
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.96 E-value=2 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=10.9
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELG 65 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A 65 (475)
+.+..+|+.|...|...| ++++|
T Consensus 10 P~n~~a~~nla~~~~~~g-~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQG-DYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCc-CHHhh
Confidence 334444445555555444 44444
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.19 E-value=1.7 Score=23.22 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhccChhHHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
....|..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566677777777777776654
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.57 E-value=33 Score=30.13 Aligned_cols=91 Identities=8% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhhhhcCCC-CChhHHHHHH---HHHHHcCCHHHHHHHHHhC---CCCCCHHHHHH---HH-HHHHh--
Q 038542 227 GLVDKGREYFDSMKNDFGII-PKIEHYGCMV---DMLCRSGRVKEAHEFIQKM---PIEANPIIWRT---LI-SACCA-- 293 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li---~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---li-~~~~~-- 293 (475)
.+++.|+..|+...+-|... .+...--|++ +.-+..+++.+|.++|++. .+..+..-|.. ++ .+++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45556666665554432221 2222222333 3335678889999998887 23333333322 22 22222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCch
Q 038542 294 RGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
..+.-.+...+++..+.+|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 256667788888888888865443
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.41 E-value=2.9 Score=22.25 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~ 171 (475)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666666666666654
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.41 E-value=2.8 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555566666666666666655544
No 330
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.91 E-value=34 Score=29.73 Aligned_cols=171 Identities=11% Similarity=-0.031 Sum_probs=98.6
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (475)
|+..|+.+--. -+..||-|.--+...|+++.|.+.|+...+.... ...+...-.-++--.|++..|.+-+...-+
T Consensus 87 DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 87 DFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 45555544222 3457888888889999999999999988875321 233333323334456788888766655544
Q ss_pred cCC-CCCccHHHHHHHHHHhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------
Q 038542 141 QMV-NRSVGLCNALIDMFAKCGDVDKALK-LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD------ 212 (475)
Q Consensus 141 ~~~-~~~~~~~~~li~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------ 212 (475)
... +|-...|--++ -..-+..+|.. +.++....|-.-|..-|-.|.-..-.+ ..++++...- -..+
T Consensus 162 ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~ 235 (297)
T COG4785 162 DDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEH 235 (297)
T ss_pred cCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHH
Confidence 421 22222222222 22335556554 445555566666665555544222222 2234443332 1211
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 213 -DVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 213 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
..||--|..-+...|+.++|..+|+-....
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 257888999999999999999999887763
No 331
>PRK09687 putative lyase; Provisional
Probab=81.76 E-value=42 Score=30.75 Aligned_cols=241 Identities=13% Similarity=0.027 Sum_probs=143.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL- 128 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~- 128 (475)
++...|.+.. ...+++.+..+|....-..+.++...|. .++...+..+.. .+|...-...+.++++.|+.
T Consensus 15 ~~~~~~~~~~-----~~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 15 SLYSQCKKLN-----DDELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred HHHHHHhhcc-----HHHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCc
Confidence 4555554433 3344445566777777777888877774 445555555554 34555555667777777763
Q ss_pred ---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH-----HHHHHHHHh-cCCCChhHHHHHHHHHHHcCChHHHHH
Q 038542 129 ---EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-----DKALKLFRS-MNGRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 129 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
..+...+..+... .++..+-...+.+++..+.- ..+...+.. +.+++...--..+.++.+.|+ .+|+.
T Consensus 86 ~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~ 162 (280)
T PRK09687 86 RCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIP 162 (280)
T ss_pred cchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHH
Confidence 3455555555332 45666666666666665421 233333433 334555555566777777775 56777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCG-LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (475)
.+-.+.. .+|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|...-.-.+++.+..
T Consensus 163 ~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~- 234 (280)
T PRK09687 163 LLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELKK- 234 (280)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHcC-
Confidence 7777765 345444455555666543 23455555555554 35777778888888888885433344444432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++ .....+.++...|.. +|...+.++.+..|+
T Consensus 235 ~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 235 GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 33 334677788888885 688888888876663
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.53 E-value=4.1 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+++.|...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 333
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.53 E-value=18 Score=27.36 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777766543 122222233445667777777744444455667777765443 46677777777777666
Q ss_pred HcCCCCCHHHH
Q 038542 206 EAGVPPDDVAF 216 (475)
Q Consensus 206 ~~g~~p~~~t~ 216 (475)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3444444
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=24 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
+..-|..|..+..+.+++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34445555555555555555555555443
No 335
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.91 E-value=65 Score=32.40 Aligned_cols=128 Identities=12% Similarity=0.030 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 88 (475)
.+++++.---...+++.++.++..++.. .|.-..-|......-.+.| ..+.+.++|++-.+ .++..|.....-+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444444333344455566666666543 1222234555555556666 78888888877654 25566666555444
Q ss_pred -HcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 038542 89 -RLGLSTDAIDLFRQMQIS-GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQ 141 (475)
Q Consensus 89 -~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 141 (475)
..|+.+...++|+..... |..- ...-|--.+.--...+++.....+++++++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 346667777777776653 2211 2223444555556667777777777777664
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.24 E-value=8.6 Score=33.20 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.+.-+..+.+.+.+.+|....+.- .-+| |...-..++..++..|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566778888888888877654 4455 566677788899999999999988888888887653
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.14 E-value=18 Score=30.91 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 191 HGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
..+.++|..++.+..+. +-.+|+..+.+|++.+.+.|+.+.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44445555554444432 1133444444444444444444443
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.54 E-value=38 Score=28.86 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH-----HHHHHHHcCCHHHH
Q 038542 196 EAVALFEEMLEAGVPPDDVAF--VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-----MVDMLCRSGRVKEA 268 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 268 (475)
+......++.....+..--++ ..+...+...+++++|...++..... |....+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555555543211111112 23445677888899988888876642 33333333 34567788999999
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 269 HEFIQKMPIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 269 ~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+.+++...-+ -.......-.+.+...|+-++|...+++.++.++.
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999876311 12222334456788999999999999999888743
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.49 E-value=45 Score=29.97 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHhcCC----C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHhcCCC
Q 038542 161 GDVDKALKLFRSMNG----R---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA---GV--PPDDVAFVGLLSACSHCGL 228 (475)
Q Consensus 161 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~~~~~~g~ 228 (475)
.++++|+.-|++..+ + ...+...+|..+.+.|++++..+.+.+|... .+ .-+..+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456667766665542 1 2234455677777777777777777776432 11 1234566777777777777
Q ss_pred HHHHHHHHHHhhhhcC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CC---C---CCHHHHHHHHHH
Q 038542 229 VDKGREYFDSMKNDFG----IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--------PI---E---ANPIIWRTLISA 290 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~---~---p~~~~~~~li~~ 290 (475)
.+.-..+++.-..... -...-.|-+-|...|...|.+.+..+++.++ |- + .-..+|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6666665554433211 1122234455666676667776666666665 10 0 013456666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCchHHHHHH-----HHHhccChhHHHH
Q 038542 291 CCARGELKLAESITKRLIGNE--PMHESNYVLLSH-----IYAKLLRWEKKTK 336 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~-----~~~~~g~~~~a~~ 336 (475)
|...++-..-..++++.+... -++|. ....++ +..+.|+|++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHh
Confidence 777777777777777766443 11222 122222 3346677777754
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.17 E-value=3.4 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998763
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.00 E-value=35 Score=27.57 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHhcCCCCh--hHHHHHHHHHHhCCCCHHHHHHHHhccCC---------CChhHHHHHHHHHHHcCC-hhHHHHHHHHH
Q 038542 36 VLKFQFGDDI--HVQNTLVHMYGSCEGGIELGRKVFDEMSE---------RDSVSWSAMIGGYARLGL-STDAIDLFRQM 103 (475)
Q Consensus 36 ~~~~g~~~~~--~~~~~li~~~~~~gg~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 103 (475)
|.+.+..++. ...|.++.-.+..+ ++.....+++.+.. .+-.+|++++.+.++..- ---+..+|..|
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3444455544 34577777766666 78877777776642 255578888888766555 34467777888
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc
Q 038542 104 QISGVCPDEITMVTVLSACTDL 125 (475)
Q Consensus 104 ~~~g~~p~~~t~~~ll~~~~~~ 125 (475)
++.+.+++..-|..++.+|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 7777788888888888887654
No 342
>PRK10941 hypothetical protein; Provisional
Probab=77.98 E-value=13 Score=33.77 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..+.|-.+|.+.++++.|.++.+.++...|+++.-+.--.-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667778999999999999999999999999887888888999999999999988887654
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.03 E-value=10 Score=35.13 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=61.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
.+-|.++|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=......- . ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 35689999999999999988774 56 8999999999999999888777655554431 0 011223333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 038542 264 RVKEAHEFIQKM-PIEANP 281 (475)
Q Consensus 264 ~~~~A~~~~~~m-~~~p~~ 281 (475)
...+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555554 566763
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.78 E-value=1.1e+02 Score=32.59 Aligned_cols=264 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC----TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
..+...|.+.+|++.--... |..+...++.-+ ...+.+..-......+-..-+..++...-.-+-.....
T Consensus 355 ~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~ 428 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ 428 (894)
T ss_pred HHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHHhcCCCChh-----------HHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHh
Q 038542 161 GDVDKALKLFRSMNGRTIV-----------SWTSVIAGLAMH-GRGLEAVALFEEMLEA----GVPPDDVAFVGLLSACS 224 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~~~~ 224 (475)
.++++|..+..+....=.. .|+++-...... |++++|.++-+..... -..+..+.+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-----HHHcC--CHHHHHHHHHhC------CCCCCHHHHHHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM-----LCRSG--RVKEAHEFIQKM------PIEANPIIWRTLISAC 291 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-----~~~~g--~~~~A~~~~~~m------~~~p~~~~~~~li~~~ 291 (475)
-.|++++|..+.....+. .-.-+..++...... +...| ..++.+..|... ...-.......-+..+
T Consensus 509 ~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 509 IRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCC----CCCCchHHH---HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEE
Q 038542 292 CARGELKLAESITKRLIGNE----PMHESNYVL---LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLI 355 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 355 (475)
...-+.+.+..-.....+.+ |..-..+.. |+.++...|+.++|....+++........+...|.
T Consensus 588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.65 E-value=29 Score=25.92 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
..++|..+-+.+...+- ....+--.-+..+...| ++++|..+.+.+.-||...|-+|-.. +.|...++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG-~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRG-DYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccc-hHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 35677777777665541 12222222233344556 99999999999888899998877654 5676677777777777
Q ss_pred HCCCCCCHHHHH
Q 038542 105 ISGVCPDEITMV 116 (475)
Q Consensus 105 ~~g~~p~~~t~~ 116 (475)
..| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 766 45554443
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.25 E-value=4.1 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+.-++.+.|+++.|.+..+.+++.+|.+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667899999999999999999999988543
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.67 E-value=7.7 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777788888888888888877765
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.66 E-value=1e+02 Score=31.62 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCC-ChhHHHHHHH----H-HHHcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhcCC--
Q 038542 163 VDKALKLFRSMNGR-TIVSWTSVIA----G-LAMHGRGLEAVALFEEMLE-------AGVPPDDVAFVGLLSACSHCG-- 227 (475)
Q Consensus 163 ~~~A~~~~~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 227 (475)
...|..+++...+. ++..-..+.. + +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766544 3333332222 2 4456788899999988866 44 2234556666776643
Q ss_pred ---CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHH
Q 038542 228 ---LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR-SGRVKEAHEFIQKMPIEANPIIWRTLISAC----CARGELKL 299 (475)
Q Consensus 228 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~li~~~----~~~g~~~~ 299 (475)
+.+.|..++...... | .|+....-..+..... -.+...|.++|......-.....-.+...| ....+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 567788888887762 4 3444333333322222 245778999998883222333222222222 23457889
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
|...++++-+.++.....-......+.. ++++.+.-.+..+.+.|...
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 9999999988884322222233334444 88888888888888777554
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.30 E-value=1.1e+02 Score=31.20 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhcCCCChh--HHHHHHHH-HHhCCCCHHHHHHHHhccCC-------C-ChhHHHHHHHHHHHcC---
Q 038542 26 LNLGKSVHGAVLKFQFGDDIH--VQNTLVHM-YGSCEGGIELGRKVFDEMSE-------R-DSVSWSAMIGGYARLG--- 91 (475)
Q Consensus 26 ~~~a~~~~~~~~~~g~~~~~~--~~~~li~~-~~~~gg~~~~A~~~f~~~~~-------~-~~~~~~~li~~~~~~g--- 91 (475)
...+.++++...+.|. .... .......+ ++... |++.|...|....+ . +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~-d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQ-DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 4567777777777652 2121 12222222 34555 78888887776643 1 3445556666666643
Q ss_pred --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCC
Q 038542 92 --LSTDAIDLFRQMQISGVCPDEITMVTVLSACTD-LGALEVGKWVESFIEKQMV 143 (475)
Q Consensus 92 --~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~ 143 (475)
+.+.|+.++.+.-..| .|+...+...+.-... ..+...|.++|....+.|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 4455777777776665 3444443333322222 2345667777776666664
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.13 E-value=6.1 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 319 VLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..|..+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887544
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.58 E-value=22 Score=30.79 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh-cCCCCChhHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND-FGIIPKIEHYGCMVDM 258 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~ 258 (475)
|.+..++.+.+.+...+|+...++-.+.. +.|..+-..+++.++-.|++++|..-++....- -...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888899999999888877763 445556667788888999999998776655431 0223334556555543
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.57 E-value=11 Score=26.60 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 270 (475)
+....++|+..|....+...-.|+. .+..+++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554432222221 234444455555555544443
No 353
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.08 E-value=1.1e+02 Score=30.36 Aligned_cols=239 Identities=14% Similarity=0.157 Sum_probs=133.3
Q ss_pred CHHHHHHHHhccCC--CChhHHHHHHHHHHHcC------ChhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHhccCCh-H
Q 038542 61 GIELGRKVFDEMSE--RDSVSWSAMIGGYARLG------LSTDAIDLFRQMQIS-GVCPD-EITMVTVLSACTDLGAL-E 129 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-g~~p~-~~t~~~ll~~~~~~~~~-~ 129 (475)
+.+....+|++..+ ++...|+..|..+...- .....+.+|+..... +..|+ ...|..+.-.+...... +
T Consensus 297 k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 297 KESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 34444466666554 34556666666655432 344555666655443 33443 33455544444443332 2
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh--------cCCCChhHHHHHHHHHHHcCC-hHH-HHH
Q 038542 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS--------MNGRTIVSWTSVIAGLAMHGR-GLE-AVA 199 (475)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~-~~~-A~~ 199 (475)
-|..+. ..++..+...|-.-+....+... ++.-+|.. +..+-...|++.. .|+ ... .+.
T Consensus 377 ~a~~l~----~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 377 VAVKLT----TELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HHHHhh----HHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 233332 22344455555544444442211 22222222 2233445666555 222 221 222
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH---HHcCCHHHHHHHHHhC
Q 038542 200 LFEEMLEAGVPPDDVAF-VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML---CRSGRVKEAHEFIQKM 275 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m 275 (475)
++-.....-..|+..|+ +.++.-+-..|-..+|..++..+.. -.+|+...|..+|..= ..+| +..+..+++.|
T Consensus 446 ~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a 522 (568)
T KOG2396|consen 446 LIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRA 522 (568)
T ss_pred HHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHH
Confidence 22222222246676665 4567777888889999999999886 5677888888888653 3344 77788888888
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCC
Q 038542 276 --PIEANPIIWRTLISACCARGELKLAESITKRLIG-NEPM 313 (475)
Q Consensus 276 --~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~p~ 313 (475)
.+..|+..|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 523 ~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 523 LREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 2236888898888888889999888888777654 3443
No 354
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.91 E-value=57 Score=27.14 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=9.1
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~ 203 (475)
++..+...|++-+|+++.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33444444444444444443
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.67 E-value=58 Score=29.51 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh--
Q 038542 84 IGGYARLGLSTDAIDLFRQMQIS--GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK-- 159 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 159 (475)
|.+++..|++.+++...-+--+. .++|.. ...-|-.|++.+....+.++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67788888888877666555432 233332 223333456667766666665555543222233346666665544
Q ss_pred ---cCCHHHHHHHH
Q 038542 160 ---CGDVDKALKLF 170 (475)
Q Consensus 160 ---~g~~~~A~~~~ 170 (475)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555554
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.42 E-value=39 Score=35.03 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=37.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhc---
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKC--- 160 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~--- 160 (475)
..+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-.+-.+... ..+.... -.|..--+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567889999988877 2234556666666665544333222211 2221111 011113456677777763
Q ss_pred CCHHHHHHHHHhcC
Q 038542 161 GDVDKALKLFRSMN 174 (475)
Q Consensus 161 g~~~~A~~~~~~~~ 174 (475)
.+...|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777777665543
No 357
>PRK12798 chemotaxis protein; Reviewed
Probab=71.17 E-value=1e+02 Score=29.77 Aligned_cols=180 Identities=18% Similarity=0.190 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHhcCCC----ChhHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCCHH
Q 038542 160 CGDVDKALKLFRSMNGR----TIVSWTSVIAG-LAMHGRGLEAVALFEEMLEAGVPPDDV----AFVGLLSACSHCGLVD 230 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~ 230 (475)
.|+.++|.+.|..+... .+..+-+|+.+ .....+..+|+++|+..+-. -|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68888999988888643 44566666665 44557888999999988763 45432 2333344567889999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHH-HHHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYG-CMVDMLCR---SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
++..+-......|.-.|=...|. .+..++.+ .-..+....++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777776666555443332 23333333 334555666677774233466888888999999999999999999
Q ss_pred HHhCCCCCCchHHHHHHHHHh-----ccChhHHHHHHHHHH
Q 038542 307 LIGNEPMHESNYVLLSHIYAK-----LLRWEKKTKIREVMD 342 (475)
Q Consensus 307 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 342 (475)
.+.+... ...-...+..|.. ..+.+++.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 8877622 2233334444432 234555555554443
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.88 E-value=27 Score=27.27 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+..+-++.+....+.|+......-++||.+.+++..|.++|+.++.+ ..+....|..++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 45556666677788999999999999999999999999999998864 334444565554 4455566666
Q ss_pred CC
Q 038542 276 PI 277 (475)
Q Consensus 276 ~~ 277 (475)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 359
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.06 E-value=78 Score=27.94 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 181 WTSVIAGLA--MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 181 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
|..++.|+. .++++++|++++-.- .+.|+-. ..++.++...|+.+.|..+++.+.- ...+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444555543 345666666665321 1222211 1355666667777777777766542 11222223333333
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038542 259 LCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 295 (475)
..++.+.||..+-+...-.-....|..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 555777777777776632222346666666665433
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.71 E-value=34 Score=29.31 Aligned_cols=89 Identities=12% Similarity=-0.019 Sum_probs=44.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDE-----ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 158 (475)
.+-+..+|++++|..-|...+.. +++.. ..|..-..+..+++.++.|..-....++.+.. .....-.-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 44566777777777777777764 23322 22333334455666666666666665554321 1111111123444
Q ss_pred hcCCHHHHHHHHHhcC
Q 038542 159 KCGDVDKALKLFRSMN 174 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~ 174 (475)
+...+++|+.-|.++.
T Consensus 180 k~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL 195 (271)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4444555554444443
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.88 E-value=13 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038542 185 IAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555554443
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.27 E-value=18 Score=36.12 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~ 301 (475)
.|+...|...+..... ..|- ......|...+.+.|..-+|..++... .+ ...+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3556666665554432 2332 223444555666666667777766554 21 223456667777888888888888
Q ss_pred HHHHHHHhCCCCCCchHHHHHHH
Q 038542 302 SITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
+.|++++++.|.++..-..|..+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 88888888888877766665544
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.53 E-value=1.2e+02 Score=29.32 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--cCCCHHHHHHHHHHhhh
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDV--AFVGLLSACS--HCGLVDKGREYFDSMKN 241 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~m~~ 241 (475)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344788999999999999886 555554 3333444443 46778888888888776
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.29 E-value=48 Score=29.41 Aligned_cols=58 Identities=7% Similarity=-0.017 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+-..+...|++-++++....++...|.+..+|..-..+.+..=+.++|.+-|....+
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3345556778899999999999999999999998888887777777777777766654
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.77 E-value=43 Score=24.27 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=29.4
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038542 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (475)
..|+.+.|.+++..++ +....|..+++++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 77778888888887777765554
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.23 E-value=28 Score=29.21 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
+++|...|+++.+.+|.+ ..|..-+.+. ++|-+++.++.+++...
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 567777778888888976 4565555554 35777777777766443
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.08 E-value=1.3e+02 Score=28.87 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=50.6
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCC-CCchHHHHHHHHH-hccChhHHHHHHHHHHh
Q 038542 280 NPIIWRTL---ISACCARGELKLAESITKRLIGNEPM-HESNYVLLSHIYA-KLLRWEKKTKIREVMDK 343 (475)
Q Consensus 280 ~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 343 (475)
|...|.++ +..+.+.|-+..|.++.+-+..++|. |+-.-...|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55556555 55778899999999999999999998 7777777788774 66788878887776654
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.87 E-value=86 Score=28.47 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-
Q 038542 185 IAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR- 261 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 261 (475)
|.+++..+++.+++...-+--+ ..++|...-.- |-.|++.+.+..+.++-...... .-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5677777777776665433322 12444433333 33467778887777777766654 222233347777666654
Q ss_pred ----cCCHHHHHHHHHh
Q 038542 262 ----SGRVKEAHEFIQK 274 (475)
Q Consensus 262 ----~g~~~~A~~~~~~ 274 (475)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5788888877743
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.51 E-value=4.7 Score=37.23 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 263 GRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 263 g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
|.+++|.+.|... ...| ....|..=.+++.+.++...|++=+....+++|+....|-.-..+....|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555544 3333 2333333344555555666666666666666666555555555555556666666666666
Q ss_pred HHhCCCc
Q 038542 341 MDKRGMK 347 (475)
Q Consensus 341 m~~~~~~ 347 (475)
..+.++.
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 6555544
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.30 E-value=28 Score=29.74 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.21 E-value=1.3e+02 Score=30.13 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--ChhH---HHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR--TIVS---WTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..|+.-|.+++++++|..++..|.-. .... .+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999988632 2223 33344444444444555555555544
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.82 E-value=1.5e+02 Score=29.44 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=75.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
|....-++++.++..-++.-.+.+-.+|. ..+...+-.++..|..+ ..++-..+|+++.+.. -|.+.+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 33344455555555555555555555543 22444555566666655 4455555666555542 2223333222222
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPK------IEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPIIWRTLISACCA 293 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~ 293 (475)
...++.+.+..+|..+.. .+.|. .+.|.-++..- ..+.+..+.+..++ +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 233555555555555553 22221 12333333221 12333333333333 222233444444455556
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 038542 294 RGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..++++|++++..+++.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 666666666666666555444
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.52 E-value=12 Score=20.43 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 295 GELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 295 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888887877766665544
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.14 E-value=61 Score=24.58 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
-..++|..+.+.+...+- ....+--.-+..+...| ++++|+..=.....||...|-+|-.. +.|-.+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG-~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRG-DYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT--HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhH-HHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 456788888888887753 33333333344455667 89999665555566888888776544 678888888888877
Q ss_pred HHCCCCCCHHHH
Q 038542 104 QISGVCPDEITM 115 (475)
Q Consensus 104 ~~~g~~p~~~t~ 115 (475)
...| .|..-.|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 3443343
No 375
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.91 E-value=94 Score=26.60 Aligned_cols=128 Identities=14% Similarity=0.048 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCChHHHHHHHHHHHHcCCCCCc--cHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT--VLSACTDLGALEVGKWVESFIEKQMVNRSV--GLCNALI 154 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 154 (475)
.|..++.... .+.+ +......++....-.-.--++.+ +...+...++++.|...+.......-+.+. .+--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 4444554443 3333 45555566655321111112222 233466777788877777766643211111 1112344
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 155 DMFAKCGDVDKALKLFRSMNGRTIVS--WTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
......|.+|+|..+++....++-.+ ...-...+...|+-++|..-|.+..+.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 56667778888888877776664433 2333455777777788887777777764
No 376
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.63 E-value=9.4 Score=39.84 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=66.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
..++++.+.+.+...--| .++|..+.+.|.++-|+.+.+.=..+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666666555433222 23556667778888777765544332 223457888998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 271 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
.-.+++ +..+|..|.......|+.+.|+..+++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 888774 67789999998889999999988888866543
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.50 E-value=2.2e+02 Score=30.76 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=24.3
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
+......+.+..+++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555666677777777765555566666667766654
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.39 E-value=1.5e+02 Score=28.80 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCCHHHHHHHHhccCCCCh---hHHHHHHHHHHHcCCh
Q 038542 19 ACAGIGDLNLGKSVHGAVLKFQFGDDIHV--QNTLVHMYGSCEGGIELGRKVFDEMSERDS---VSWSAMIGGYARLGLS 93 (475)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~gg~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~ 93 (475)
..+..|+.+. .+.+.+.|..++... ..+.+...++.| +.+-+.-+++.-..++. ..++ -+...+..|+.
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~ 81 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFR-DSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDV 81 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCH
Confidence 3345566654 444445676655432 234455555666 77766666654333321 1222 34445566776
Q ss_pred hHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccH--HHHHHHHHHhcCCHHHHHH
Q 038542 94 TDAIDLFRQMQISGVCPDEI---TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~ 168 (475)
+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 66544443 22211110 0112233334455553 4455556666554321 1234445566777777666
Q ss_pred HHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhcCCCHHHH
Q 038542 169 LFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF---VGLLSACSHCGLVDKG 232 (475)
Q Consensus 169 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a 232 (475)
+++.-... |..-++.+.. .+..|+.+ +.+.+.+.|..|+.... .+++...+..|+.+-+
T Consensus 154 Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv 218 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218 (413)
T ss_pred HHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH
Confidence 66554322 2222222222 23445543 44445566665554321 2334433445555433
No 379
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.00 E-value=91 Score=26.16 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=78.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh-HHHHHHH--HHHHcC
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE-HYGCMVD--MLCRSG 263 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~--~~~~~g 263 (475)
+++.+..++|+.-|.++.+.|...-++ .-........+.|+...|...|+++.++ ...|-.. -...|=. ++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456778888888888888766432221 1222334566788888899999888875 3334332 2222222 345678
Q ss_pred CHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 264 RVKEAHEFIQKMPI--EA-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 264 ~~~~A~~~~~~m~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.+++.....+-+.. .| -...-..|.-+-.+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888877777722 22 233445666677788999999999988876
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.90 E-value=2e+02 Score=29.95 Aligned_cols=48 Identities=17% Similarity=-0.005 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHhCC---CC------CCchHHHHHHHHHhccChhHHHHHHH
Q 038542 292 CARGELKLAESITKRLIGNE---PM------HESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
+..+++..|....+.+.+.. |. .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45788999999999887542 22 12334444555567799999999997
No 381
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.54 E-value=1e+02 Score=32.16 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCChHHHHHHHHHHHHcC--CCC
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI----------TMVTVLSACTDLGALEVGKWVESFIEKQM--VNR 145 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 145 (475)
.+-..++-.|....+++..+++.+.++. -||.. .|.-.++---+.|+-+.|..+.--+++.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455566666667777777777777765 23322 12223333334556666665555444322 223
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA---FVGLLSA 222 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~ 222 (475)
| +||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 D---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 D---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred c---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 3 34444543 22221 12334555666778888887766 4666543 3334433
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAES 302 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~ 302 (475)
-.+ .++...+ +.. .-..|-..+++.|.+++....++- .+ .+.+-.-.+++.+|.+
T Consensus 333 aG~--~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV-------~~---y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV-------AT---YFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhH-------HH---hhhhhhhccCHHHHHH
Confidence 221 1111111 111 111233456777777766655442 22 3445556678888888
Q ss_pred HHHHHHhCCCCC
Q 038542 303 ITKRLIGNEPMH 314 (475)
Q Consensus 303 ~~~~~~~~~p~~ 314 (475)
+.+.|.++.|+.
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 888888888764
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.44 E-value=33 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=42.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+.......+.+......+.+.+.....|++..|..++.++...|+.++|.+..+++
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334666666666666666665567888888999999999999999998888887
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.99 E-value=59 Score=23.61 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 97 (475)
+.++++.+...|+-.. .....+-..- ..+|+.+.|+++++.++ +....|...++++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~aa~-~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIEAAT-ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhc-cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777664222 2222222211 23348888999998888 78888888888888888766554
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.84 E-value=20 Score=25.41 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 337 (475)
...+.+.|...++.+++..++.+. ++-.|+.+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888776654444 344566777778877777654
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.80 E-value=47 Score=26.01 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 272 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+-.+.+-|++.+...-+.+|.+-+++..|.++|+-+...-+.....|-.+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33447788999999999999999999999999998876544333344433
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.79 E-value=2.1e+02 Score=29.94 Aligned_cols=186 Identities=8% Similarity=-0.124 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 163 VDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 163 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..+|...++..... +...+.--+......++++.+...+..|-... .-...-.--+..+....|+.++|..+|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34455555543321 22222223333345666666666666653321 1122233345555555666666666666553
Q ss_pred hh-----------cCCCCC------hh--------HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038542 241 ND-----------FGIIPK------IE--------HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG 295 (475)
Q Consensus 241 ~~-----------~~~~p~------~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g 295 (475)
.. .|.++. .. .-..-+..+...|...+|...+..+....+......+.......|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 21 111100 00 011223456677888888877776622345555566666667788
Q ss_pred CHHHHHHHHHHHHhCC---CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 038542 296 ELKLAESITKRLIGNE---PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKI 349 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 349 (475)
..+.+..........+ -.-+..|...+..+++.-..+.+.-.--...+.++.+.
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 8888887776543211 01133466777777766666666543333346666554
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.12 E-value=62 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777788888888888888887766
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.64 E-value=51 Score=25.93 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhC--CCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 299 LAESITKRLIGN--EPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 299 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
.+.++|+.|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888654 456667788888899999999999988864
No 389
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.40 E-value=17 Score=35.25 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=56.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEANPIIWRTL-ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
-+...+.++.|..++.++ .+.||-..|-.. -.++.+.+++..|..=+.++++.+|.....|..-..++.+.+.+.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556666677666665 556654443322 256677777777777777777777777777777777777777777777
Q ss_pred HHHHHHH
Q 038542 336 KIREVMD 342 (475)
Q Consensus 336 ~~~~~m~ 342 (475)
..++.-.
T Consensus 93 ~~l~~~~ 99 (476)
T KOG0376|consen 93 LDLEKVK 99 (476)
T ss_pred HHHHHhh
Confidence 7775543
No 390
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=59.58 E-value=47 Score=32.31 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=90.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcC--CCChhHH-HHHHHHHHhCCCCHHHHHHHHhccCCCC---hhHHHHH-HHHHHH
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQF--GDDIHVQ-NTLVHMYGSCEGGIELGRKVFDEMSERD---SVSWSAM-IGGYAR 89 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~-~~li~~~~~~gg~~~~A~~~f~~~~~~~---~~~~~~l-i~~~~~ 89 (475)
+.+.+..|.++-.+.+ ++.|. ..++.|- +-|-.+|.. | +++-..-+.+.-..++ ..-.+.| |.+|
T Consensus 88 LWaAsaAGHl~vVk~L----~~~ga~VN~tT~TNStPLraACfD-G-~leivKyLvE~gad~~IanrhGhTcLmIa~y-- 159 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLL----LRRGASVNDTTRTNSTPLRAACFD-G-HLEIVKYLVEHGADPEIANRHGHTCLMIACY-- 159 (615)
T ss_pred hhHHhccCcHHHHHHH----HHhcCccccccccCCccHHHHHhc-c-hhHHHHHHHHcCCCCcccccCCCeeEEeeec--
Confidence 4455566777644444 44443 3333333 234444444 5 8988888887655543 2222333 3333
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHH--HHHHHHHHhcCCHHH
Q 038542 90 LGLSTDAIDLFRQMQISGVCPDEITM--VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC--NALIDMFAKCGDVDK 165 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~y~~~g~~~~ 165 (475)
.|..+ +-+.+.+.|..++..++ ++.+.-|+..|.++-. +.+++.|...+...+ +-| -+....|..+-
T Consensus 160 kGh~~----I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv----q~Ll~~ga~i~~d~~GmtPL-~~Aa~tG~~~i 230 (615)
T KOG0508|consen 160 KGHVD----IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV----QLLLKHGAKIDVDGHGMTPL-LLAAVTGHTDI 230 (615)
T ss_pred cCchH----HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH----HHHHhCCceeeecCCCCchH-HHHhhhcchHH
Confidence 34444 44555667888887776 6788889999988754 444454433222111 122 23345666666
Q ss_pred HHHHHHhcCCC--ChhHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 038542 166 ALKLFRSMNGR--TIVSWTSVIAGLAMH-GRGLEAVALFEEML 205 (475)
Q Consensus 166 A~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~A~~l~~~m~ 205 (475)
...+.+.+.++ -+.....+...|... .+.-.|++.|.+..
T Consensus 231 Ve~L~~~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aM 273 (615)
T KOG0508|consen 231 VERLLQCETSRESRIEALELLGATYVDKKRDLLGALKYWRRAM 273 (615)
T ss_pred HHHHhcCCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 66666644433 123333333334332 34556666666543
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.75 E-value=21 Score=26.15 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 303 ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.++...+.+|.+...-..+...+...|++++|.+.+-.+.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444555666666666666666666666666666555543
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.69 E-value=2.2e+02 Score=28.86 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=77.6
Q ss_pred hcCCCHHHHHHHHHHhhhhcC-------CCCChhHHHHH---HHHHHHcCCHHHHHHHHHhC----------CC------
Q 038542 224 SHCGLVDKGREYFDSMKNDFG-------IIPKIEHYGCM---VDMLCRSGRVKEAHEFIQKM----------PI------ 277 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m----------~~------ 277 (475)
.++..++++..-|......+. +..+++|...| .+++...|+.+-|.+++++. .+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 345556677666665554221 11234444444 45567788877776666554 11
Q ss_pred ------CC-CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCC-CCchHHHHHHHHH-hccChhHHHHHHHHHHh
Q 038542 278 ------EA-NPIIWRTL---ISACCARGELKLAESITKRLIGNEPM-HESNYVLLSHIYA-KLLRWEKKTKIREVMDK 343 (475)
Q Consensus 278 ------~p-~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 343 (475)
.| |...|.+| +..+.+.|-+..|.+..+.+..++|. ||.....+++.|+ ++.+|.--.++++..+.
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 12 33334433 45667889999999999999999988 8888888888885 56778777777777643
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.58 E-value=30 Score=30.47 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=46.0
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLI-SACCARGELKL 299 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li-~~~~~~g~~~~ 299 (475)
|.....++.|...|.... -+.|+. .-|+.-+..+.+..+++.+..--.+. .+.||.+--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666666554444 345555 33444555566666666655433333 5556554433333 34455666777
Q ss_pred HHHHHHHHHh
Q 038542 300 AESITKRLIG 309 (475)
Q Consensus 300 a~~~~~~~~~ 309 (475)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777643
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=1.5e+02 Score=27.07 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHhccCChHHHHHHHH----HHHHcCCCCCccHHH
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT-------VLSACTDLGALEVGKWVES----FIEKQMVNRSVGLCN 151 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~ 151 (475)
+.+-..+.+++++|+..+.+....|+..|..+.+- +...|...|+...-.+... .|..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 152 ALIDMFAKCGD-VDKALKLFRSMNGR---------TIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 152 ~li~~y~~~g~-~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
+|++.+....+ ++.-+.+.....+- -...-.-+|..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.94 E-value=1.6e+02 Score=27.04 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
+.....|..+|.+.+|.++.++. .+.| +...|-.|+..+...|+--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445666777777777777766 4444 5666777777777777755555544443
No 396
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.65 E-value=1.2e+02 Score=29.80 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 038542 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141 (475)
Q Consensus 62 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 141 (475)
++.-.++++..+--+.+-+...+...-.......--+.+.+..+.|.. ++.--+..+.+++-.++++.+.+.
T Consensus 12 ~~~r~evl~~w~t~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~~g~~--------l~QPR~G~~~~~e~i~lL~~l~~~ 83 (480)
T TIGR01503 12 HKIREEVLQQWPTGKDVDLQDAVDYHKSIPAHKNFAEKLELAKKKGKT--------MAQPRAGVALLDEHIELLRTLQEE 83 (480)
T ss_pred HHHHHHHhhcCCccccCCHHHHHHHHHhCCccccHHHHHHHHHhcCCE--------eecCCCCCCcHHHHHHHHHHHHHc
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHH-----HHcCChHHHHHHHHH
Q 038542 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-------------TIVSWTSVIAGL-----AMHGRGLEAVALFEE 203 (475)
Q Consensus 142 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~-----~~~g~~~~A~~l~~~ 203 (475)
| ...+...-|+.|.+.+++++|...+++-.+. .+.+...++.+. .++|-. .+..+++-
T Consensus 84 g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp-DarlL~e~ 159 (480)
T TIGR01503 84 G---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP-DARLLAEI 159 (480)
T ss_pred c---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-cHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH---Hhhhhc---CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD---SMKNDF---GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~---~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (475)
+...|+....--..+----|++.--++++...|+ ++...| |+..|.+++..|...+ +
T Consensus 160 ~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL-----------------v 222 (480)
T TIGR01503 160 ILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL-----------------V 222 (480)
T ss_pred HHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc-----------------c
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh--CCCccCCCccEE
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK--RGMKKIPGSTLI 355 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~s~~ 355 (475)
+|....--.+|.++....+ --.++.-.|.++|+..+=......+++ ...-+.-++..+
T Consensus 223 PPsisiav~ilE~Lla~eq--------------------GVksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv 282 (480)
T TIGR01503 223 PPSISNAIGIIEGLLAAEQ--------------------GVKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDV 282 (480)
T ss_pred ChHHHHHHHHHHHHHHHHc--------------------CCeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCce
Q ss_pred EECCEEEEEEeCCCCCccHHHHHHHHHHHHHHH
Q 038542 356 ELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388 (475)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m 388 (475)
.+...+|.++.+..........+--+......+
T Consensus 283 ~i~tV~hqwMG~FP~d~~~A~~lis~~a~~A~l 315 (480)
T TIGR01503 283 FVTTVFHQWMGGFPEDESKAFGVISTATTIAAL 315 (480)
T ss_pred EEEEEeeeccCCCCCChhhhhhHHHHHHHHHHH
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.12 E-value=80 Score=27.59 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhCC--CCC----CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 283 IWRTLISACCARGELK-------LAESITKRLIGNE--PMH----ESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~-------~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
++.-+...|...|+.+ .|.+.|.+..+.+ |.. ......++..+.+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444445566666633 4555555555443 222 2345567788889999999999998887654
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.96 E-value=65 Score=25.96 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccCh
Q 038542 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 331 (475)
-+.|.++.+-|| ...............|++.-|.++.+.+...+|++...-....++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777777775 3344445556677899999999999999999999988888888888776643
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.14 E-value=15 Score=28.95 Aligned_cols=33 Identities=42% Similarity=0.681 Sum_probs=25.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
...|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999986 55666654
No 400
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.00 E-value=3.4e+02 Score=29.88 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=9.6
Q ss_pred CChhHHHHHHHHHHHcCCHH
Q 038542 247 PKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~ 266 (475)
++...-...+.++++.|..+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPP 806 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcc
Confidence 34444445555555555443
No 401
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.90 E-value=2e+02 Score=30.32 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGR-----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 228 (475)
++-+.+.+.+++|.+.-+..... -...+...|..+.-.|++++|-.+.-.|... +..-|.--+..++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45556677777777777665432 1235666777777777777777777776543 44455555555555554
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
.... +.-+-.. .-..+...|..++..+..
T Consensus 439 l~~I---a~~lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCC-CcccCchHHHHHHHHHHH
Confidence 4332 2222221 112345566666666655
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.49 E-value=29 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
-||..|....+.|++++|+.++++..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999998766666665444
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.44 E-value=2.8e+02 Score=28.84 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHhCCCCHHHHHHHHhccC---CCChhHHHHHHHHHHHcCCh-------hHHHHHHHHHHHC
Q 038542 43 DDIHVQNTLVHMYGSCEGGIELGRKVFDEMS---ERDSVSWSAMIGGYARLGLS-------TDAIDLFRQMQIS 106 (475)
Q Consensus 43 ~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~ 106 (475)
.+..+| ++|-.+.||| ++++|.++..+.. ++....+-..+..|..+.+- ++...-|++....
T Consensus 110 ~~~p~W-a~Iyy~LR~G-~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCG-DYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHH-HHHHHHHTTT--HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccH-HHHHHHHhcC-CHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344556 4566677888 8888888883332 23445666677777665322 2444555555443
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.37 E-value=1.7e+02 Score=26.40 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=72.7
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF----RQMQISGVCPDEITMVTVLSACTDLGALE-VGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~ 135 (475)
++++|.+++.. =...+.+.|+...|-++- +-..+.+.++|......++..+...+.-+ .-..+.
T Consensus 5 ky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi 73 (260)
T PF04190_consen 5 KYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFI 73 (260)
T ss_dssp -HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 66666666533 133445555554444333 33333455666655555555544332211 122222
Q ss_pred HHHH---HcC--CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 038542 136 SFIE---KQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210 (475)
Q Consensus 136 ~~~~---~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 210 (475)
..++ +.+ ..-++.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++
T Consensus 74 ~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------------- 140 (260)
T PF04190_consen 74 KAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------------- 140 (260)
T ss_dssp HHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-------------
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-------------
Confidence 2222 222 1236677888899999999999998887665444333332233333333333222
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
|...-.+++. |...+++..|...++...+
T Consensus 141 -dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 -DLFIARAVLQ-YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 2222223333 4446777777777766654
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.37 E-value=55 Score=20.59 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
..+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777777777777777777776666654
No 406
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=52.63 E-value=17 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 038542 372 HQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400 (475)
Q Consensus 372 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 400 (475)
+...+++..+++...+++..|+.||..-+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 44567888899999999999999997544
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.30 E-value=31 Score=31.61 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 116 (475)
-||..|..-.+.|+.++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46688888888888888888888888888654444543
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.69 E-value=54 Score=24.07 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCC----CCC-----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 291 CCARGELKLAESITKRLIGNE----PMH-----ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+.|++..|.+.+.+..+.. ... ..+...+...+...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888877666665432 111 12334566778888999999999888764
No 409
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.52 E-value=59 Score=27.35 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC----hhHHHHHHHHH
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR----WEKKTKIREVM 341 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 341 (475)
+++|+.-|++++.++|+...++..+.++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4566777777888999999999999999987664 33444444443
No 410
>PRK10941 hypothetical protein; Provisional
Probab=50.48 E-value=1.5e+02 Score=27.02 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 254 CMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+-.+|.+.++++.|+...+.+ .+.| ++.-|.--.-.|.+.|.+..|..=++..++.-|.++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3455677788888888887777 4444 44556555666788888888888888888887776654
No 411
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.43 E-value=2.1e+02 Score=26.49 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----------cCCHHH
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----------SGRVKE 267 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 267 (475)
.++++.|.+.++.|.-..|.-+.-.+++.=.+...+.+|+.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 456777777778887777777766677777777778888777763 2224444444432 466777
Q ss_pred HHHHHHhCC
Q 038542 268 AHEFIQKMP 276 (475)
Q Consensus 268 A~~~~~~m~ 276 (475)
..++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776653
No 412
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.31 E-value=2.5e+02 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=12.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDV 214 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~ 214 (475)
++.+.|+..+..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 55555666666666655544433
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.46 E-value=2e+02 Score=25.99 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=78.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhcCCCHH-HHH
Q 038542 159 KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM----LEAGVPPDDVAFVGLLSACSHCGLVD-KGR 233 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 233 (475)
+.+++++|.+++..- ...+.++|+...|.++-.-| .+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456677777765542 23445566655554443333 33456666655555555554433211 112
Q ss_pred HHHHHhhhh--cCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 234 EYFDSMKND--FGI--IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 234 ~~~~~m~~~--~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.+.+.+.+- .+- .-++.....+...|.+.|++.+|+..|-... .|+...+..++.-+...|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 222222211 122 2356778888889999999999988776542 2222222223333333332
Q ss_pred CCCCCCchHH-HHHHHHHhccChhHHHHHHHHHHhC
Q 038542 310 NEPMHESNYV-LLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 310 ~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
|.....|. ..+--|.-.|+...|...++...++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333333 3344577788999999988888764
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.33 E-value=22 Score=28.12 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=25.3
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038542 87 YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
....|.-..|-.+|.+|+..|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33456677899999999999999986 45565543
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.11 E-value=2.1e+02 Score=27.83 Aligned_cols=200 Identities=11% Similarity=0.037 Sum_probs=101.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc--HHHHHHHHHHhcC
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDEIT--MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCG 161 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g 161 (475)
..++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...++.|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33456666444 44455687776543 2345555666777754 44555666555432 1223455667889
Q ss_pred CHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCCCHHHHHHH
Q 038542 162 DVDKALKLFRSMNGRT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF--VGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 162 ~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~ 235 (475)
+.+.+..+++.-...+ ...++ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-...+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9998888887543221 11122 23334456665 455555666766654221 1234444566777665555
Q ss_pred HHHhhhhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 038542 236 FDSMKNDFGIIPKI---EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII---WRTLISACCARGELKLAESITK 305 (475)
Q Consensus 236 ~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~ 305 (475)
++. |..++. .-.+. +...+..|+.+-+.-+++. |..|+... ..+++......|+.+.+.-+++
T Consensus 155 l~~-----g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 155 IDH-----KACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred Hhc-----CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 432 443332 22222 3334456776655555544 33333211 1244444456677655444443
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.08 E-value=1.2e+02 Score=31.25 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 038542 183 SVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 183 ~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
+|..+|..+|++..+..+++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 344455555555555555544443
No 417
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.73 E-value=1.1e+02 Score=28.61 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM----PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
|--=.+-|.+..++..|...|.+. --.| +.+.|+.=..+-.-.|++..++.=..+++..+|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333345577888888888888776 1123 5667777777777789999999999999999999888888777777
Q ss_pred HhccChhHHHHHHHHH
Q 038542 326 AKLLRWEKKTKIREVM 341 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m 341 (475)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7777766666555443
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.05 E-value=88 Score=30.29 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhc-C----C-CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDF-G----I-IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~-~----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
..|++.++-.|++..|+++++.+.-.. + + .-...+|--+.-+|.-.+++.+|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777766553210 0 0 112334555556666667777777766654
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.60 E-value=2.3e+02 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=18.9
Q ss_pred ChhHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 76 DSVSWSAMIGGYAR--LGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 76 ~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
.+..++-+|+-|.- .+--++..+++.-++ |..++...=.+++.+
T Consensus 110 ~~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Ta 155 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTA 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHH
Confidence 34556666654432 222233333333322 345555544444443
No 420
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.37 E-value=1.8e+02 Score=24.86 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCC--------------CCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMV--------------NRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+++-.|.+..++.+++.+++.+-+..+ .+--.+.|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455667777778888888777765322 22334556666777777777777777764
No 421
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.72 E-value=1.6e+02 Score=23.92 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 213 DVAFVGLLSACSHCGL-VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
..+|.+++.+.++..- ---+..+|+.+++ .+.+++...|.++|.+..+-
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 3456666666655544 3344555566655 25566666666666655443
No 422
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.44 E-value=92 Score=30.33 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 272 IQKMPIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 272 ~~~m~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
|...+++|. ..+..+-+..+.+++++..|..+.+++++++|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333355653 3456667777889999999999999999998854
No 423
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.43 E-value=4.8e+02 Score=29.18 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 038542 155 DMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~ 174 (475)
.+|..+|...+|...|.+..
T Consensus 928 ~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeeecCCchHHHHHHHHHHh
Confidence 34667777777777776653
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.34 E-value=1.5e+02 Score=23.71 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHHHcCCHH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 246 IPKIEHYGCMVDMLCRSGRVK---EAHEFIQKM-P-IEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.++..+--.+.-++.+..+.+ +...+++.. + -.| ......-|.-++.+.++++.+.++.+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444445555555554433 334445444 1 222 2233334666788999999999999999999987743
No 425
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=2.9e+02 Score=26.57 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhCC---CCC---
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT------------LISACCARGELKLAESITKRLIGNE---PMH--- 314 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~------------li~~~~~~g~~~~a~~~~~~~~~~~---p~~--- 314 (475)
..|...+-.+|++++|.+++.+.+++ ||.+ -++.|...+++-.|.-+-+++.... |+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34556677899999999999998543 3333 2467888899999988888876432 221
Q ss_pred -CchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEEC
Q 038542 315 -ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358 (475)
Q Consensus 315 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 358 (475)
...|..++......+.+=++-+.++..-..|..+....-|+..-
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 23577888888889999999999999888776655444455443
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.96 E-value=1.1e+02 Score=22.52 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 286 TLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
.+.......|+.++|...+++.++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445567789999999999888754
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.90 E-value=1e+02 Score=31.20 Aligned_cols=133 Identities=15% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHhC-CCCC--CHHH
Q 038542 210 PPDDVAFVGLLSACSHC--GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC-RSGRVKEAHEFIQKM-PIEA--NPII 283 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p--~~~~ 283 (475)
.|+..|..+++.-.... ...+-|-.++..|.+ .+.|--...| +...|- -.|+...|...+... ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 36666665555444332 223445556666654 3334322222 223343 368888888877776 3333 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
...|.......|-...|-.++.+.+.+....+-++..+.++|....+.+.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566677777888889999999888886677789999999999999999999998876644
No 428
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.55 E-value=1.2e+02 Score=21.93 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 96 (475)
...+++.+.+.|+-.. ...-...+... +.+.|.++++.++.+...+|.+...++...|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~----~~~e~I~~~~t-r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP----DMIEEIQAAGS-RRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH----HHHHHHHcCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3456777777663222 12222223333 788888888888888888888888888877765544
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.40 E-value=2.6e+02 Score=25.88 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 229 VDKGREYFDSMKNDFGI---IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
.+.|.+.|+........ ..++.....+.....+.|..++-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777888887762111 345556666677777777766655555555445577888889999999999999999999
Q ss_pred HHHhCC
Q 038542 306 RLIGNE 311 (475)
Q Consensus 306 ~~~~~~ 311 (475)
.+...+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 988853
No 430
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.03 E-value=80 Score=19.82 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=17.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 119 (475)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555666665555555555554444
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.00 E-value=40 Score=22.63 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.-.-.+|.+|.+.|++++|.++++++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334567778888888888877777654
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.19 E-value=3.3e+02 Score=26.63 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHH
Q 038542 80 WSAMIGGYAR---LGLSTDAIDLFRQMQISGVCPDEIT 114 (475)
Q Consensus 80 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t 114 (475)
+..+++++.+ ..+++.|+..+..|.+.|..|....
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344444444 3566666666666666665554433
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.98 E-value=4.7e+02 Score=28.41 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH-
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF- 157 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y- 157 (475)
-|..|+..|...|..++|++++.+....--.-|... .+.-..+.+.+.+.+-+ +.. |+-.|
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~~----Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NLD----LILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhccc-chh----HHHHHh
Confidence 478888899999999999999988876310011110 11111233333333322 111 11111
Q ss_pred --HhcCCHHHHHHHHHhcCCCChhHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 158 --AKCGDVDKALKLFRSMNGRTIVSWT-SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 158 --~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
.-..+.+...++|..-......+.+ .-+-.|......+-+..+++.+....-.++..-.+.++..|..
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223444555555441100001110 1223455666777778888887776656666666777666643
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.68 E-value=3.2e+02 Score=26.42 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCCC
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG------RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA---------GVPPD 212 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~ 212 (475)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+.... -+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3566788899999999999999998542 12345666666666677777766666665542 13333
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
...+..+...+.+ ++..|.+.|-...
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCC
Confidence 4444455444433 6666666554444
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.64 E-value=2.9e+02 Score=25.86 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhh---cCCCCChhHHHHHHHHHHH-----cCCHHHHHHHHHhCCC---CCCHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKND---FGIIPKIEHYGCMVDMLCR-----SGRVKEAHEFIQKMPI---EANPI 282 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~---~p~~~ 282 (475)
.........|++.|+.+.|.+.+....++ .|.+-|+..+..-+..+.- ...++.|..++++-|- +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556667788888888888777654432 2555565544443333322 2345667777776631 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 283 IWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+|..+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444333 3344667777776665543
No 436
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=2.5e+02 Score=25.04 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHhcC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHHHHHHH
Q 038542 160 CGDVDKALKLFRSMN--GRTI-VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~ 235 (475)
..+++.|...|.+.. .|++ .-|..=+..+.+..+++.+..--.+..+ +.||.+- ...+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555554432 3333 2233444455555555555544444444 3444332 22233344444555555555
Q ss_pred HHHh
Q 038542 236 FDSM 239 (475)
Q Consensus 236 ~~~m 239 (475)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5443
No 437
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.87 E-value=4.1e+02 Score=27.33 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=57.8
Q ss_pred CChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 43 DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 43 ~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
+....+..|+...... +.+.-.++++++.. . ...|..++++....|-.....-+.+.+....+.+ ...-..+..+
T Consensus 308 ~~~~~f~~lv~~lR~~--~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~ 383 (574)
T smart00638 308 PAAAKFLRLVRLLRTL--SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVL 383 (574)
T ss_pred chHHHHHHHHHHHHhC--CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Confidence 3455677777777665 47777777777665 4 6788888888888887665555555555544432 2222222222
Q ss_pred --HhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 122 --CTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 122 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
....-..+....++..+......+...+
T Consensus 384 ~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l 413 (574)
T smart00638 384 PHTARYPTEEILKALFELAESPEVQKQPYL 413 (574)
T ss_pred HHhhhcCCHHHHHHHHHHhcCccccccHHH
Confidence 2233444444444444443334444433
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.77 E-value=4.8e+02 Score=28.17 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=91.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
......||+++.|++.-.++. |..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 345678999999998877765 567899999999999999999999988654 333334466678888776
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
++.+....+ .|.. .....-.-.|+.++-.+++...+..|- .|. .-..+|.-+.|.++.++....
T Consensus 719 Km~~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 665554432 2221 112222346888998999998875542 221 124578888999999888653
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.67 E-value=42 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHHHHHHhccCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 62 IELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 62 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
++...++++.+.. .|-.-.-.+|.+|.+.|++++|.+.+.++..
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444432 1333444578888899999999888887764
No 440
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.37 E-value=3.8e+02 Score=26.83 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=16.0
Q ss_pred hcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhc
Q 038542 39 FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71 (475)
Q Consensus 39 ~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~ 71 (475)
.|+.-+..+...++.. .+|++..|...++.
T Consensus 192 egi~i~~eal~~Ia~~---s~GdlR~aln~Le~ 221 (472)
T PRK14962 192 EGIEIDREALSFIAKR---ASGGLRDALTMLEQ 221 (472)
T ss_pred cCCCCCHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 3555555554444432 23477777666655
No 441
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.39 E-value=1.9e+02 Score=29.86 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=12.4
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLK 38 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~ 38 (475)
+++.+|...|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 445555555555555555555443
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.22 E-value=1.4e+02 Score=21.52 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHH
Q 038542 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 197 (475)
.++..+.+.|+- +....-...+..-+.++|.++++.++.++..+|.++..++...|...-|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 455566655532 2222223334455678888888888888888888888888777765444
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.29 E-value=1e+02 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 283 IWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
-|..|+.-|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777888888888877765
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.07 E-value=3.7e+02 Score=26.05 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSE------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+.-+.+.|..|| +++.|.+.+.+..+ ..+..|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG-~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCG-QLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhc-cHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4556667777777 77777777766432 1233555666666666777666666666554
No 445
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.33 E-value=55 Score=31.98 Aligned_cols=57 Identities=7% Similarity=-0.049 Sum_probs=47.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
......+.++.|...+.++++++|+....|..-..++.+.+++..|..=.....+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 445566889999999999999999988888888889999999999988776666544
No 446
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=38.29 E-value=17 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=8.8
Q ss_pred cCcchhhHHHHh
Q 038542 445 NDCHSATKFISK 456 (475)
Q Consensus 445 ~~~~~~~~~is~ 456 (475)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457888888874
No 447
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.24 E-value=73 Score=28.03 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..+.++.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456666666666655 3333 45566666666667777777777777777666654
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.16 E-value=2.8e+02 Score=24.41 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH----HHHHcCCHHHHHHHHHh
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD----MLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 274 (475)
......|+.+.|.+..+.+... -+..|...+-.|.. =+.|.|..++|+++.+.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334555555555555544432 22333222211111 13455566666666654
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.01 E-value=3.4e+02 Score=25.39 Aligned_cols=50 Identities=6% Similarity=0.196 Sum_probs=24.2
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
.+.|+..+|.+.|+.+.++..+..-......|+.++....-+.+...++-
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655532221112233445555555554544444443
No 450
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.82 E-value=3.4e+02 Score=25.21 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHcCChHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A 197 (475)
-+|.-|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3555666666666655443
No 451
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.52 E-value=3.2e+02 Score=24.88 Aligned_cols=122 Identities=14% Similarity=-0.087 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-------CHHHHHHHHHhcCCC-ChhHHHHHHHHHHH----cCCh
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-------DVDKALKLFRSMNGR-TIVSWTSVIAGLAM----HGRG 194 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-------~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~ 194 (475)
+..+|...+..+.+.|..+.......+..+|..-. +...|...|.+.... +......+...|.. ..+.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 55666666666666554432222333444443321 122566666554432 22233333323322 2355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---------------CHHHHHHHHHHhhhhcCCCCChhHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---------------LVDKGREYFDSMKNDFGIIPKIEHYG 253 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---------------~~~~a~~~~~~m~~~~~~~p~~~~~~ 253 (475)
.+|...|....+.|. +..... +. .+...| +...|...+...... +.........
T Consensus 208 ~~A~~wy~~Aa~~g~-~~a~~~--~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 276 (292)
T COG0790 208 KKAFRWYKKAAEQGD-GAACYN--LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL-GFDNACEALR 276 (292)
T ss_pred HHHHHHHHHHHHCCC-HHHHHH--HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc-CChhHHHHHH
Confidence 667777776666653 222211 11 222222 667777777776663 5555544444
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.49 E-value=1.7e+02 Score=24.42 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=43.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
+...|++++..-. .++......+..-.|.++++.+.+. +...+..|...-++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4566777666544 4455555556667888899988885 767777777777888888887643
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.48 E-value=2e+02 Score=22.55 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCchHH----HHHHHHHhccChhHHHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLI-------GNEPMHESNYV----LLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~ 340 (475)
|...+..|-.++...|+++++....++.+ +++.+....|. .-..++...|+.++|.+-|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
No 454
>PF15161 Neuropep_like: Neuropeptide-like
Probab=37.11 E-value=19 Score=23.21 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=13.3
Q ss_pred cccccCcCcchhhHHHHhHh
Q 038542 439 KNLRVCNDCHSATKFISKIY 458 (475)
Q Consensus 439 ~~~~~~~~~~~~~~~is~~~ 458 (475)
---|-|.|||-+. |+.+..
T Consensus 11 aesRPCVDCHAFe-fmqRAL 29 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRAL 29 (65)
T ss_pred CCCCCchhhHHHH-HHHHHH
Confidence 3468899999765 666543
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.93 E-value=2.3e+02 Score=22.95 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH
Q 038542 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV 265 (475)
Q Consensus 201 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (475)
.+.+.+.|++++..= ..++..+.+.+..-.|.++++.+.+. +..-+..|-..-++.+...|-+
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 344455565555432 23555555555556677777777664 5445555555556666666654
No 456
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.93 E-value=1.7e+02 Score=21.41 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHhccChh-HHHHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPM--HESNYVLLSHIYAKLLRWE-KKTKIREVM 341 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 341 (475)
|......+...+...|+++.|.+.+-.+++.+|. +...-..|+.++.-.|.-+ -+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5667777888888999999999988888887754 3556778888888777743 444444444
No 457
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.70 E-value=1.6e+02 Score=21.49 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCCh
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 93 (475)
...+++.+.+.|+-.+. .+ -...+..- +.+.+.++++.++.+...+|..+..++...+..
T Consensus 22 ~~~v~~~L~~~gvlt~~-~~---~~I~~~~t-~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTDS-MA---ESIMAKPT-SFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCHH-HH---HHHHcCCC-cHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 34566666666642222 12 22223334 678888888888888888888888888665543
No 458
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.64 E-value=2.1e+02 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=11.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~ 109 (475)
++..+.+.++.-.|.++++++.+.+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 344444444444444444444444333
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.46 E-value=1.3e+02 Score=26.84 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-------PI-EANPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
+..-|.+.|++++|.++|+.+ +- .+...+...+..++...|+.+....+.-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334444555555555555544 00 1122233334444455555555544433
No 460
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=36.20 E-value=2.1e+02 Score=22.48 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWR-TLISACCARGELKLAESITK 305 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~ 305 (475)
..+-.++..++.-.|..++|.++++..+..++-...| -++..|....+.++..++-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444555666666666666666666664433333322 35566666555555444433
No 461
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.98 E-value=1.4e+02 Score=27.57 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
+.|+.++|..+|+.++.+.|.++....-+........+.-+|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 345555555555555555555544444333333333333333333
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.55 E-value=1.9e+02 Score=28.02 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C---------ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG--R---------TIVSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~--~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
...|++.++-.||+..|+++++.+.- + .+.++--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888876641 1 33456667777888888888888888764
No 463
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.28 E-value=91 Score=28.77 Aligned_cols=75 Identities=4% Similarity=0.023 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRT-LISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
.|+..|...+.--.+.|.+.+...+|.+. ...| |+..|-. --.-+..+++++.+..+|.+.++++|.+|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34445555444444445555555555554 3334 4555532 12234567888888888888888888888766543
No 464
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.94 E-value=70 Score=21.75 Aligned_cols=51 Identities=10% Similarity=-0.100 Sum_probs=35.8
Q ss_pred CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 038542 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS 57 (475)
Q Consensus 6 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 57 (475)
+.|+...++.++..+++...++.+...++.+.+.| .-+..+|-.-+..+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888877 3556666666665555
No 465
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.84 E-value=4.2e+02 Score=27.45 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHH-------HHHcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHhc
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDM-------LCRSGRVKEAHEFIQKM-PIEA-N------PIIWRTLISACCAR 294 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~-------~~~~g~~~~A~~~~~~m-~~~p-~------~~~~~~li~~~~~~ 294 (475)
++..++|..-.. |...+.+..+++=.. ..+..++..+.++|..- ..-| | ......|--.|...
T Consensus 330 E~I~e~F~~~~t--~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L 407 (872)
T KOG4814|consen 330 EEIAESFENFST--QMELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL 407 (872)
T ss_pred HHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH
Confidence 444444544332 344444444444333 23556677777776543 2111 1 23456666778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 295 GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 295 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.+.|.|.++++++.+.+|.++-.-.....+....|.-++|..+....+..
T Consensus 408 ~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 408 EQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999999999988877777888888889999999888777643
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.28 E-value=3.8e+02 Score=24.79 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=16.6
Q ss_pred CHHHHHHHHhcc-C-CCChhHHHHHHHHHH
Q 038542 61 GIELGRKVFDEM-S-ERDSVSWSAMIGGYA 88 (475)
Q Consensus 61 ~~~~A~~~f~~~-~-~~~~~~~~~li~~~~ 88 (475)
++..++++...+ + +++...|..++..+.
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 466777777777 3 456667776665543
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.27 E-value=1.9e+02 Score=24.17 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
...-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334455555555554444333333333444444443
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.49 E-value=2.1e+02 Score=26.35 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
|...|..+..||...|+...+.+-+
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6677777777777777666555433
No 469
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=33.31 E-value=8.8 Score=36.97 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=84.2
Q ss_pred cCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHH-HHHHH-HhCCCCHHHHHHHHhccCC--CCh-
Q 038542 3 EYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT-LVHMY-GSCEGGIELGRKVFDEMSE--RDS- 77 (475)
Q Consensus 3 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~-~~~gg~~~~A~~~f~~~~~--~~~- 77 (475)
..|+.||.++|.+=..+--+......|+..++.++ ||...... .-+.- ...| .-..-+++|+.+.- |++
T Consensus 408 sa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~-k~q~~le~F~~I~Iedprv~ 481 (650)
T KOG4334|consen 408 SAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDG-KQQGFLELFKKIKIEDPRVV 481 (650)
T ss_pred cccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccc-cchhHHHHhhcccccCchHH
Confidence 35788888888876655555566777777777664 33332221 00111 1112 45566888888752 322
Q ss_pred ---------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 038542 78 ---------VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT-VLSACTDLGALEVGKWVESFIEKQMVNRSV 147 (475)
Q Consensus 78 ---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 147 (475)
..|+.|..++.++-.+.+. .+=.+|...|-.-+.++... -...-+...+..++.++-.+.+-.-+.|.+
T Consensus 482 e~ctk~~~psPy~iL~~cl~Rn~g~~d~-~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~ 560 (650)
T KOG4334|consen 482 EMCTKCAIPSPYNILRDCLSRNLGWNDL-VIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHL 560 (650)
T ss_pred HHhhhcCCCCHHHHHHHHHHhhcCCcce-eeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHh
Confidence 3588888888887666421 22233443333333322210 000011223456666666665545578889
Q ss_pred cHHHHHHHHHHhc
Q 038542 148 GLCNALIDMFAKC 160 (475)
Q Consensus 148 ~~~~~li~~y~~~ 160 (475)
.+|.+|+.+|.+.
T Consensus 561 ~twGSlLriYGr~ 573 (650)
T KOG4334|consen 561 LTWGSLLRIYGRL 573 (650)
T ss_pred hhHHHHHHHhhhh
Confidence 9999999999875
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.78 E-value=2.5e+02 Score=22.13 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCC--CCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 300 AESITKRLIGNE--PMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 300 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
..++|..|...+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566788777554 5556678888888999999999998885
No 471
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.30 E-value=73 Score=29.38 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH-HHHHHHhccChhHHHHHHHH
Q 038542 277 IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL-LSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 277 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~ 340 (475)
+..|+..|...+.--.+.|-+.+...++.++....|.+...|.. -..-|...++++.+..+|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 34488889888887778888999999999999999999887765 44456777899999888744
No 472
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.59 E-value=1.1e+02 Score=17.82 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 038542 286 TLISACCARGELKLAESI 303 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~ 303 (475)
.+.-.+-..|++++|..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444555555555555
No 473
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=31.57 E-value=2.1e+02 Score=21.02 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=26.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHcCcccCCccccc
Q 038542 368 DKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402 (475)
Q Consensus 368 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 402 (475)
...||.....-+..+++.....+.|+.|....-+.
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~ 91 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLA 91 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 45688888888888888888888999987654443
No 474
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=31.29 E-value=5.1e+02 Score=25.35 Aligned_cols=235 Identities=9% Similarity=-0.039 Sum_probs=123.1
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHH
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 96 (475)
|.++...| ..+...+-...... ++..++-...-++.... +......+.+.+..++.........++...+...-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~-~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~ 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQE-DALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccC-ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH
Confidence 44555555 34555554444332 22333333222332222 233355566666666666777888888777765544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 176 (475)
- .+..+.+ .++...-...+.++...+. + +........+ .++..+-..-+.+.++.|+.+..-.+-......
T Consensus 120 ~-~L~~~L~---~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~ 190 (410)
T TIGR02270 120 P-WLEPLLA---ASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDS 190 (410)
T ss_pred H-HHHHHhc---CCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCC
Confidence 4 4444443 2344444455566665442 1 2222333332 456666666777777776654444444444556
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV 256 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 256 (475)
|...-..-+.+....|. .+|...+...... |+......+.......| .+++...+....++ + .+-...+
T Consensus 191 ~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d----~--~vr~~a~ 259 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA----A--ATRREAL 259 (410)
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCC-chhHHHHHHHHhcC----h--hhHHHHH
Confidence 66666666777777777 6666666653332 22222222232332223 33566666555542 2 2555667
Q ss_pred HHHHHcCCHHHHHHHHHhCC
Q 038542 257 DMLCRSGRVKEAHEFIQKMP 276 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~ 276 (475)
.++++.|+..-+.-+.+.|.
T Consensus 260 ~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHcCCcchHHHHHHHhc
Confidence 77778877776666666664
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.19 E-value=1.9e+02 Score=26.26 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+=.++.+.++++.|....++.+..+|.++.-..--.-+|.+.|...-|.+-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445778889999999999999999999887777778889999999999888877554
No 476
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.19 E-value=1.5e+02 Score=30.48 Aligned_cols=75 Identities=12% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
....+.+...-...+.....-++..|.+.|-.+.+..++..+-..-.. ..-|..-+..+.++|+......+-+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333344443322234445555666677777666666666655433221 123445556666777766665555544
No 477
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.16 E-value=3.1e+02 Score=27.67 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
...++.-|.+.+++++|+.++..|.=
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 44567778888888888888877753
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.07 E-value=3e+02 Score=24.55 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m 204 (475)
|..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455556666666665555
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.46 E-value=1e+02 Score=27.18 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
....++.+.+.+++.+++++-|.....|..+...-.+.|+++.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999887644
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.36 E-value=3.4e+02 Score=23.08 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHCCCCC--CHHHHHHHHHH-----HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 93 STDAIDLFRQMQISGVCP--DEITMVTVLSA-----CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
.+.|+.+++.+.+.--.| -......++.. |.+.|.+++|.+++++... .|+......-+.+..++.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 481
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.98 E-value=3.6e+02 Score=23.17 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhc-------------CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDF-------------GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+++..|-+.-++.++.++++.|.+-. +..+.-..-|.-...+.+.|.+|-|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45556667777777777777765420 11222334444555555666666665555543
No 482
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.94 E-value=2e+02 Score=20.27 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=10.8
Q ss_pred HHHHHhCCCCHHHHHHHHhccCC
Q 038542 52 VHMYGSCEGGIELGRKVFDEMSE 74 (475)
Q Consensus 52 i~~~~~~gg~~~~A~~~f~~~~~ 74 (475)
+...+..| +.+-+..+++.-..
T Consensus 30 l~~A~~~~-~~~~~~~Ll~~g~~ 51 (89)
T PF12796_consen 30 LHYAAENG-NLEIVKLLLENGAD 51 (89)
T ss_dssp HHHHHHTT-THHHHHHHHHTTTC
T ss_pred HHHHHHcC-CHHHHHHHHHhccc
Confidence 33334444 66555555554433
No 483
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.88 E-value=4.6e+02 Score=24.40 Aligned_cols=71 Identities=7% Similarity=0.063 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH----------HcCChHHHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLA----------MHGRGLEAVALF 201 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~l~ 201 (475)
.++++.+...++.|.-+.+.-+.-++.++=.+.+...+++.+... ..-|..++..|| -.|++..-++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456777777777777777777777777777788888888776542 212433443333 257777666665
Q ss_pred HH
Q 038542 202 EE 203 (475)
Q Consensus 202 ~~ 203 (475)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 53
No 484
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.32 E-value=3.7e+02 Score=23.08 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=12.3
Q ss_pred hccChhHHHHHHHHHHh
Q 038542 327 KLLRWEKKTKIREVMDK 343 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~ 343 (475)
+.|+++.|.+.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 56777888777777764
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.27 E-value=5.3e+02 Score=24.90 Aligned_cols=55 Identities=7% Similarity=-0.162 Sum_probs=32.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHc
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVLSACT--DLGALEVGKWVESFIEKQ 141 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 141 (475)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 2333333332 344556666666665543
No 486
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.82 E-value=1.8e+02 Score=19.45 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hcCCCHHHHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-----SHCGLVDKGREY 235 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~ 235 (475)
...|++-+|-++++++-..-..|....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34666667777776665432223444455555433 234555555443
No 487
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.82 E-value=1.3e+02 Score=20.88 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 038542 87 YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126 (475)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (475)
....++.+.+.+++++....|..|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888889999998888887777776666666654443
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.62 E-value=1.5e+02 Score=22.50 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (475)
.++..+...+..-.|.++++++.+.+..++..|.-..|+.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555666666677888888888777666776666666666665543
No 489
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.41 E-value=1.5e+02 Score=22.52 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=25.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666665555555555555555555543
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.36 E-value=2.1e+02 Score=21.48 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=24.9
Q ss_pred HHHHHHHHhCC-CCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 301 ESITKRLIGNE-PMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 301 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++.++++...+ +..+.....|.-.|++.|+-+.+.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444433 44456666777777777777777776654
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.34 E-value=5.2e+02 Score=24.47 Aligned_cols=87 Identities=22% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE-AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++..... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 345666666666665555555554334444444444433333333 33344444333 77777777777777766665
Q ss_pred HHHHHHHHhhh
Q 038542 231 KGREYFDSMKN 241 (475)
Q Consensus 231 ~a~~~~~~m~~ 241 (475)
.....+..+..
T Consensus 248 ~~~~~i~~~L~ 258 (340)
T PF12069_consen 248 LVAILIDALLQ 258 (340)
T ss_pred HHHHHHHHHhc
Confidence 55554555554
No 492
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=28.17 E-value=3.2e+02 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.5
Q ss_pred hcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhc
Q 038542 39 FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71 (475)
Q Consensus 39 ~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~ 71 (475)
..+.||..+.|-+...++.+- ..+-...+++.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~-Stev~~a~Wdl 208 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSM-STEVCHALWDL 208 (669)
T ss_pred cccCchHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 345566665555555555554 44444444443
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.15 E-value=1.2e+02 Score=22.89 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 038542 83 MIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m 103 (475)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555555555555555554
No 494
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.10 E-value=8.4e+02 Score=26.86 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=153.9
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
.+|..+-..-+..+.+.+ ..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT-PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHH
Confidence 688888888888888877 6555455556666666665556666665554322223344444442 566666667777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHH-HHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLE-AVAL 200 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l 200 (475)
+...+..+ ...+. ... -.+|..+-...+.+..+.+..+ .+.....+++...-...+.++...+..+. +...
T Consensus 708 L~~~~~~~-~~~l~-~~L---~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAGD-AALFA-AAL---GDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccCC-HHHHH-HHh---cCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 66544221 12222 222 2456667777777777766543 34444566677666677777777776543 4555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 038542 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEAN 280 (475)
Q Consensus 201 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 280 (475)
+..+.. .+|...-...+.++...|..+.+...+..+.++ ++..+-...+.++.+.+.- ++...+..+--.|+
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~ 851 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAAD-VAVPALVEALTDPH 851 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhcccc-chHHHHHHHhcCCC
Confidence 555554 457777778888898888876654445444442 5666666778888887763 45555555433667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
..+-...+.++...+....+...+..+++
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77777888888776444566677766665
No 495
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=27.83 E-value=5.3e+02 Score=24.41 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=88.5
Q ss_pred CCCCh---hHHHHHHHHHHhCC--CCHHHHHHHHhccCCCChhHHHH-----HHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038542 41 FGDDI---HVQNTLVHMYGSCE--GGIELGRKVFDEMSERDSVSWSA-----MIGGYARLGLSTDAIDLFRQMQISGVCP 110 (475)
Q Consensus 41 ~~~~~---~~~~~li~~~~~~g--g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p 110 (475)
++|+. .++|+++..-.... ..++.|..+|..=. ....|-. +.+.+++.++.+.+..+-+.+.. -|
T Consensus 122 FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP 196 (340)
T PF12069_consen 122 FKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LP 196 (340)
T ss_pred cCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CC
Confidence 35554 46778877654432 13777777775422 2445554 45677888877776666555544 34
Q ss_pred CHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhHHHHHHHH-
Q 038542 111 DEITMVTVLSACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTIVSWTSVIAG- 187 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~- 187 (475)
..+-+ .++.++-...- -+.+..+.+.+... +|.....+++++.+...........+..+. ++....-..++..
T Consensus 197 ~~vl~-aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IA 272 (340)
T PF12069_consen 197 PEVLY-ALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIA 272 (340)
T ss_pred hHHHH-HHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHH
Confidence 44433 34444333332 23344455555443 688888888888887766655555344333 3221111122222
Q ss_pred ---HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 188 ---LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 188 ---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
+....+.+....+++++-. .+|...|+.+..=..
T Consensus 273 gR~W~~L~d~~~l~~fle~LA~---~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 273 GRCWQWLKDPQLLRLFLERLAQ---QDDQALFNQLFADLV 309 (340)
T ss_pred hcCchhcCCHHHHHHHHHHHHc---ccHHHHHHHHHHHHH
Confidence 2222344444555555543 334555665554433
No 496
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.20 E-value=2.5e+02 Score=20.42 Aligned_cols=43 Identities=28% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 199 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
++|+-....|+.-|...|..++....-.--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777776666666777777777665
No 497
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.16 E-value=4.3e+02 Score=26.77 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038542 36 VLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115 (475)
Q Consensus 36 ~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 115 (475)
+.+.|+..+......++.. ++|++..|..++++.. +|. .|... .+....|. | .++....
T Consensus 191 l~~egi~~~~~al~~ia~~---s~GslR~al~lLdq~i------------a~~-~~~It--~~~V~~~l--g-~~~~~~i 249 (509)
T PRK14958 191 LKEENVEFENAALDLLARA---ANGSVRDALSLLDQSI------------AYG-NGKVL--IADVKTML--G-TIEPLLL 249 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHH------------hcC-CCCcC--HHHHHHHH--C-CCCHHHH
Confidence 3445766665555545443 2349999998886532 121 22211 11222332 2 2344444
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRS 146 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (475)
..++.++.. ++.+.+..+++.+...|.++.
T Consensus 250 ~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 250 FDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 455555443 666667777777777666554
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.77 E-value=4.8e+02 Score=26.14 Aligned_cols=97 Identities=6% Similarity=-0.086 Sum_probs=56.2
Q ss_pred HHHHHHHHH-HhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 29 GKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 29 a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
..+.+..+. +.|+..+......++. .++|++..|+.++++... ....++.. + .++.
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~---~S~Gd~RdAL~lLeq~i~~~~~~it~~~-------------V----~~~l- 243 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAK---KGDGSVRDMLSFMEQAIVFTDSKLTGVK-------------I----RKMI- 243 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH---HcCChHHHHHHHHHHHHHhCCCCcCHHH-------------H----HHHh-
Confidence 334444443 3466666655544432 234599999999987421 11111111 1 2222
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 106 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
|. ++...+..++.+....+....+..++..+.+.|..|...
T Consensus 244 -g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 -GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred -CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 33 366666677777666666678888889998888776554
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.27 E-value=5.5e+02 Score=24.14 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCCCH----HH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR--------TIVSWTSVIA-GLAMHGRGLEAVALFEEMLEAGVPPDD----VA 215 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 215 (475)
..-....-|++-||.+.|.+.+.+.-++ |++.+..-+. .|..+.-..+-++..+.+.+.|...+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4455667788888888888887765443 3333332222 233344445556666666666654432 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
|..+- |....++.+|-.+|-....
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 43332 3344566666666655443
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.17 E-value=2.6e+02 Score=20.32 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=43.8
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS 73 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~ 73 (475)
|+...|...++....... +=.++|+.....|+..|..++..+++...-+= ..+...+++..|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls~--eE~EL~ELa~~AGv~~dp~VFriildLL~~nV-sP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA--EEVELYELAQLAGVPMDPEVFRIILDLLRLNV-SPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccCH--HHHHHHHHHHHhCCCcChHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 345556655544333322 22389999999999999999999999876655 6777777777664
Done!