Query 038542
Match_columns 475
No_of_seqs 613 out of 3542
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 21:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.5E-32 2.9E-36 274.8 32.5 333 5-344 195-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.4E-33 3.2E-37 281.9 24.6 374 8-397 82-514 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.6E-35 257.1 22.3 183 78-261 27-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.1E-29 1.7E-33 245.8 22.4 200 94-294 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-25 3.3E-29 210.4 37.7 330 7-344 29-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.8E-24 2E-28 204.9 35.5 320 17-344 6-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.7E-23 2.3E-27 201.4 32.8 308 9-325 25-373 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.7E-22 2E-26 194.7 30.5 309 29-344 11-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.7E-21 5.8E-26 194.5 28.5 330 8-344 37-478 (514)
10 2gw1_A Mitochondrial precursor 99.9 2.3E-20 7.9E-25 186.3 28.5 329 11-345 7-445 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 3.4E-19 1.2E-23 168.9 33.4 312 10-329 3-354 (359)
12 3fp2_A TPR repeat-containing p 99.9 2.6E-19 8.7E-24 179.9 31.6 325 12-345 27-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 8.6E-19 3E-23 166.1 33.3 296 44-344 2-335 (359)
14 3hym_B Cell division cycle pro 99.8 1.5E-18 5.3E-23 162.5 29.3 286 42-331 19-321 (330)
15 3hym_B Cell division cycle pro 99.8 1.7E-17 6E-22 155.3 31.7 288 5-298 17-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 3.4E-18 1.2E-22 163.0 23.6 277 58-339 38-354 (368)
17 4eqf_A PEX5-related protein; a 99.8 4.2E-18 1.4E-22 162.4 20.1 261 76-340 64-352 (365)
18 1b89_A Protein (clathrin heavy 99.8 3E-19 1E-23 168.6 11.3 250 57-338 15-266 (449)
19 3fp2_A TPR repeat-containing p 99.8 3.9E-17 1.3E-21 163.9 26.9 294 45-345 25-408 (537)
20 3mkr_A Coatomer subunit epsilo 99.8 2.6E-16 8.9E-21 144.8 29.5 267 57-338 11-288 (291)
21 1b89_A Protein (clathrin heavy 99.8 5.3E-19 1.8E-23 167.0 10.2 282 22-338 15-305 (449)
22 3cv0_A Peroxisome targeting si 99.8 3.9E-17 1.3E-21 152.6 22.0 258 78-340 22-311 (327)
23 4eqf_A PEX5-related protein; a 99.8 1.3E-16 4.4E-21 152.0 23.5 254 48-306 68-352 (365)
24 1fch_A Peroxisomal targeting s 99.7 2.3E-16 7.7E-21 150.3 24.3 283 19-308 34-357 (368)
25 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-18 8.3E-23 174.9 8.9 128 146-274 126-261 (1134)
26 3mkr_A Coatomer subunit epsilo 99.7 2.5E-16 8.6E-21 144.9 21.3 246 84-344 6-264 (291)
27 3cv0_A Peroxisome targeting si 99.7 9.1E-16 3.1E-20 143.3 24.7 258 9-273 20-310 (327)
28 4g1t_A Interferon-induced prot 99.7 3.3E-15 1.1E-19 147.4 29.4 340 8-354 49-469 (472)
29 2xm6_A Protein corresponding t 99.7 6E-14 2E-18 139.2 37.2 317 10-345 39-433 (490)
30 2xm6_A Protein corresponding t 99.7 1.1E-13 3.6E-18 137.4 38.0 298 29-345 26-397 (490)
31 3spa_A Mtrpol, DNA-directed RN 99.7 9.9E-18 3.4E-22 170.5 8.2 147 45-192 127-286 (1134)
32 2ooe_A Cleavage stimulation fa 99.7 2.7E-13 9.1E-18 135.9 35.6 367 9-385 12-493 (530)
33 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.9E-20 135.1 18.9 225 77-311 5-237 (258)
34 3uq3_A Heat shock protein STI1 99.7 7.8E-15 2.7E-19 131.9 21.2 220 112-344 5-236 (258)
35 2pl2_A Hypothetical conserved 99.7 7.3E-15 2.5E-19 129.0 19.0 195 144-341 2-211 (217)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1E-18 129.5 20.7 241 89-338 17-269 (275)
37 3u4t_A TPR repeat-containing p 99.6 2.8E-14 9.6E-19 129.6 20.2 249 50-327 8-267 (272)
38 2ooe_A Cleavage stimulation fa 99.6 1.9E-12 6.5E-17 129.7 31.7 304 33-344 2-420 (530)
39 1xi4_A Clathrin heavy chain; a 99.6 2.8E-12 9.4E-17 135.0 33.2 286 13-338 1052-1339(1630)
40 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.8E-18 130.5 22.1 247 76-328 96-366 (382)
41 2pl2_A Hypothetical conserved 99.6 2.6E-13 8.8E-18 119.1 19.9 193 76-274 4-210 (217)
42 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 120.2 21.9 195 148-344 38-238 (252)
43 2ho1_A Type 4 fimbrial biogene 99.6 7.7E-13 2.6E-17 118.6 23.3 206 77-317 37-245 (252)
44 2vq2_A PILW, putative fimbrial 99.6 5.6E-13 1.9E-17 117.0 21.9 195 147-343 8-210 (225)
45 1ouv_A Conserved hypothetical 99.6 1.5E-12 5E-17 118.5 25.3 223 76-312 5-253 (273)
46 1ouv_A Conserved hypothetical 99.6 2.9E-12 1E-16 116.5 26.9 223 111-345 5-252 (273)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.4E-18 122.8 17.3 195 147-344 23-222 (243)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.3E-18 122.9 16.8 214 76-325 22-237 (243)
49 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.5E-17 117.9 23.9 227 10-241 3-249 (272)
50 2vq2_A PILW, putative fimbrial 99.5 1.6E-12 5.4E-17 114.0 23.1 209 76-319 7-220 (225)
51 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-13 1.4E-17 131.4 21.0 311 16-346 9-353 (452)
52 1xi4_A Clathrin heavy chain; a 99.5 1.3E-11 4.3E-16 130.1 32.8 281 22-337 1088-1377(1630)
53 4a1s_A PINS, partner of inscut 99.5 1.5E-13 5.3E-18 132.8 17.0 265 79-344 50-372 (411)
54 3sf4_A G-protein-signaling mod 99.5 2.8E-13 9.7E-18 130.4 18.7 266 77-343 9-335 (406)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.8E-13 2.3E-17 120.5 19.5 235 61-304 20-269 (275)
56 3ro2_A PINS homolog, G-protein 99.5 3E-13 1E-17 126.2 16.8 265 79-344 7-332 (338)
57 2h6f_A Protein farnesyltransfe 99.5 9E-13 3.1E-17 125.4 19.7 227 112-343 97-347 (382)
58 3sf4_A G-protein-signaling mod 99.5 9.8E-13 3.4E-17 126.5 20.3 295 9-333 8-365 (406)
59 4g1t_A Interferon-induced prot 99.5 8.6E-12 2.9E-16 122.8 26.8 297 43-344 49-401 (472)
60 3vtx_A MAMA; tetratricopeptide 99.5 3E-12 1E-16 108.9 19.4 164 178-344 5-170 (184)
61 4abn_A Tetratricopeptide repea 99.5 7.8E-13 2.7E-17 130.3 15.8 208 128-340 84-317 (474)
62 2ond_A Cleavage stimulation fa 99.4 3.4E-11 1.2E-15 111.6 25.2 218 94-315 33-275 (308)
63 4a1s_A PINS, partner of inscut 99.4 2.1E-12 7.2E-17 124.7 16.8 267 45-312 48-374 (411)
64 3vtx_A MAMA; tetratricopeptide 99.4 5.2E-12 1.8E-16 107.4 17.2 166 146-314 4-174 (184)
65 3ro2_A PINS homolog, G-protein 99.4 4E-12 1.4E-16 118.5 17.4 270 13-312 8-334 (338)
66 3ulq_A Response regulator aspa 99.4 1.6E-11 5.5E-16 117.5 19.8 288 20-308 22-366 (383)
67 3ulq_A Response regulator aspa 99.4 1.3E-11 4.3E-16 118.3 18.1 284 56-343 23-367 (383)
68 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.7E-17 121.3 9.9 166 76-241 26-223 (311)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-12 4.1E-17 121.0 9.6 246 44-312 26-309 (311)
70 1hz4_A MALT regulatory protein 99.4 7.2E-10 2.4E-14 105.5 28.9 263 81-343 18-321 (373)
71 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 5.9E-16 125.8 18.5 163 178-343 9-173 (723)
72 3e4b_A ALGK; tetratricopeptide 99.3 7.5E-11 2.6E-15 115.4 21.3 311 17-346 42-389 (452)
73 3as5_A MAMA; tetratricopeptide 99.3 4.1E-11 1.4E-15 101.3 16.9 160 149-343 10-172 (186)
74 2ond_A Cleavage stimulation fa 99.3 1.7E-10 5.8E-15 106.9 22.1 212 129-345 33-271 (308)
75 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.1E-15 97.8 18.8 159 112-274 8-169 (186)
76 4abn_A Tetratricopeptide repea 99.3 5E-11 1.7E-15 117.4 17.2 209 61-275 83-318 (474)
77 3q15_A PSP28, response regulat 99.3 9.4E-11 3.2E-15 112.0 17.8 162 180-342 184-363 (378)
78 3q15_A PSP28, response regulat 99.3 1.2E-09 4E-14 104.3 25.4 304 6-310 6-365 (378)
79 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.6E-15 100.9 18.3 204 110-324 5-223 (228)
80 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.7E-15 100.2 18.3 189 146-344 6-209 (228)
81 1hz4_A MALT regulatory protein 99.2 4.1E-09 1.4E-13 100.2 24.5 232 79-311 55-323 (373)
82 3edt_B KLC 2, kinesin light ch 99.2 1.4E-10 4.7E-15 105.3 11.6 118 89-206 13-155 (283)
83 1qqe_A Vesicular transport pro 99.2 5.9E-10 2E-14 102.3 15.3 185 156-340 46-265 (292)
84 4gyw_A UDP-N-acetylglucosamine 99.1 2E-09 6.7E-14 110.6 19.0 160 77-240 9-172 (723)
85 1qqe_A Vesicular transport pro 99.1 1.5E-09 5.2E-14 99.6 16.0 244 27-313 2-272 (292)
86 3qky_A Outer membrane assembly 99.1 1.4E-08 4.7E-13 91.3 21.4 205 146-390 14-247 (261)
87 3edt_B KLC 2, kinesin light ch 99.1 2.7E-09 9.1E-14 96.7 16.8 131 76-206 42-197 (283)
88 4e6h_A MRNA 3'-END-processing 99.1 1.9E-07 6.5E-12 94.9 30.6 335 8-345 64-534 (679)
89 2fo7_A Synthetic consensus TPR 99.1 6E-09 2E-13 82.6 15.2 128 181-311 4-133 (136)
90 3mv2_B Coatomer subunit epsilo 99.1 5.5E-08 1.9E-12 88.1 23.0 235 58-315 26-287 (310)
91 3mv2_B Coatomer subunit epsilo 99.0 1.5E-08 5.1E-13 91.8 18.6 240 84-345 20-283 (310)
92 3qky_A Outer membrane assembly 99.0 4.5E-09 1.5E-13 94.6 15.4 202 110-333 13-250 (261)
93 2fo7_A Synthetic consensus TPR 99.0 6.3E-09 2.1E-13 82.4 14.0 128 215-344 3-132 (136)
94 2pzi_A Probable serine/threoni 99.0 1.3E-09 4.4E-14 112.3 11.6 169 158-330 402-583 (681)
95 3qou_A Protein YBBN; thioredox 99.0 1.2E-08 4.1E-13 93.2 16.7 176 163-342 102-282 (287)
96 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.8E-08 1.6E-12 85.7 19.3 179 148-345 5-214 (225)
97 4ga2_A E3 SUMO-protein ligase 99.0 4.4E-10 1.5E-14 92.0 5.5 137 190-330 9-149 (150)
98 2pzi_A Probable serine/threoni 98.9 3.6E-08 1.2E-12 101.4 19.0 189 123-316 402-608 (681)
99 4e6h_A MRNA 3'-END-processing 98.9 9.1E-07 3.1E-11 89.9 28.3 213 131-345 328-571 (679)
100 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.7E-13 84.5 13.1 76 268-343 93-172 (176)
101 2vsy_A XCC0866; transferase, g 98.9 1.6E-08 5.6E-13 101.9 14.5 160 160-322 2-169 (568)
102 2vsy_A XCC0866; transferase, g 98.9 3E-08 1E-12 100.0 16.3 147 125-275 2-154 (568)
103 2ifu_A Gamma-SNAP; membrane fu 98.9 6.1E-08 2.1E-12 89.5 17.1 219 90-336 4-253 (307)
104 4ga2_A E3 SUMO-protein ligase 98.9 6E-09 2.1E-13 85.1 8.1 122 219-343 3-128 (150)
105 3rjv_A Putative SEL1 repeat pr 98.9 2.1E-07 7.3E-12 80.7 18.5 160 177-345 17-198 (212)
106 3urz_A Uncharacterized protein 98.8 7.7E-08 2.6E-12 83.2 15.0 128 183-314 59-190 (208)
107 3urz_A Uncharacterized protein 98.8 1.9E-07 6.4E-12 80.8 16.0 186 78-288 5-197 (208)
108 3rjv_A Putative SEL1 repeat pr 98.8 3.7E-07 1.3E-11 79.2 17.9 158 76-242 17-197 (212)
109 3qou_A Protein YBBN; thioredox 98.8 3.1E-07 1.1E-11 83.8 18.2 163 110-274 115-280 (287)
110 3dra_A Protein farnesyltransfe 98.8 7.2E-06 2.5E-10 74.8 27.1 227 90-322 46-300 (306)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.4E-07 1.5E-11 78.4 17.9 145 150-314 9-154 (213)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.1E-12 81.6 15.8 185 111-316 3-219 (225)
113 3gyz_A Chaperone protein IPGC; 98.8 4.5E-08 1.5E-12 79.7 10.5 102 244-345 30-134 (151)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.3E-07 1.1E-11 79.2 16.2 126 215-345 8-151 (213)
115 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 79.1 13.3 155 150-308 9-171 (176)
116 2vgx_A Chaperone SYCD; alterna 98.7 4.3E-08 1.5E-12 79.7 9.2 97 248-344 20-118 (148)
117 3u3w_A Transcriptional activat 98.7 2.3E-06 7.9E-11 78.2 21.4 160 184-343 81-265 (293)
118 4gco_A Protein STI-1; structur 98.7 1.6E-07 5.4E-12 74.0 11.5 107 215-323 15-123 (126)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 5.3E-07 1.8E-11 82.5 16.7 163 180-342 77-264 (293)
120 1a17_A Serine/threonine protei 98.7 3.9E-07 1.3E-11 75.1 14.1 127 215-343 15-145 (166)
121 3dra_A Protein farnesyltransfe 98.7 3.6E-06 1.2E-10 76.8 21.2 213 127-343 48-286 (306)
122 3u3w_A Transcriptional activat 98.7 8E-06 2.7E-10 74.5 23.9 203 32-240 33-264 (293)
123 1na0_A Designed protein CTPR3; 98.7 3.7E-07 1.3E-11 70.9 12.7 114 214-329 10-125 (125)
124 4gco_A Protein STI-1; structur 98.6 1.9E-07 6.6E-12 73.5 10.6 100 245-344 8-110 (126)
125 2vyi_A SGTA protein; chaperone 98.6 4.3E-07 1.5E-11 71.2 12.7 118 213-332 12-131 (131)
126 2c2l_A CHIP, carboxy terminus 98.6 9.3E-08 3.2E-12 87.0 9.6 187 148-344 5-199 (281)
127 2lni_A Stress-induced-phosphop 98.6 4.4E-07 1.5E-11 71.6 12.2 115 214-330 17-133 (133)
128 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4.1E-11 80.1 16.6 128 77-205 75-223 (293)
129 2xcb_A PCRH, regulatory protei 98.6 4.7E-07 1.6E-11 72.9 12.2 97 248-344 17-115 (142)
130 2ifu_A Gamma-SNAP; membrane fu 98.6 2.8E-07 9.4E-12 85.0 11.8 197 124-342 3-222 (307)
131 1p5q_A FKBP52, FK506-binding p 98.6 4.5E-07 1.5E-11 84.7 12.4 94 249-342 196-292 (336)
132 2uy1_A Cleavage stimulation fa 98.5 3.8E-05 1.3E-09 75.5 25.7 354 11-392 16-418 (493)
133 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.6E-11 75.2 12.8 150 159-308 4-174 (203)
134 2uy1_A Cleavage stimulation fa 98.5 4.2E-05 1.5E-09 75.1 25.6 321 7-343 44-412 (493)
135 2e2e_A Formate-dependent nitri 98.5 8.8E-07 3E-11 74.1 11.7 127 189-318 21-152 (177)
136 3q7a_A Farnesyltransferase alp 98.5 0.00011 3.6E-09 67.9 26.1 235 80-320 57-342 (349)
137 2vgx_A Chaperone SYCD; alterna 98.5 2.4E-07 8.1E-12 75.3 7.6 102 214-317 22-125 (148)
138 1wao_1 Serine/threonine protei 98.5 9.4E-07 3.2E-11 86.7 12.9 119 220-340 13-135 (477)
139 2e2e_A Formate-dependent nitri 98.5 2.1E-07 7.2E-12 78.0 7.2 120 224-345 21-145 (177)
140 3upv_A Heat shock protein STI1 98.5 6.9E-07 2.3E-11 70.1 9.8 96 249-344 4-101 (126)
141 1a17_A Serine/threonine protei 98.5 3.8E-06 1.3E-10 69.0 14.5 127 179-308 14-144 (166)
142 3gw4_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 74.8 11.4 112 61-172 7-132 (203)
143 3gyz_A Chaperone protein IPGC; 98.5 6.1E-07 2.1E-11 73.0 8.9 98 215-314 38-137 (151)
144 1elw_A TPR1-domain of HOP; HOP 98.4 3.9E-06 1.3E-10 64.2 13.1 109 214-324 5-115 (118)
145 4f3v_A ESX-1 secretion system 98.4 5.8E-06 2E-10 73.8 15.6 69 252-321 174-247 (282)
146 4f3v_A ESX-1 secretion system 98.4 4.9E-06 1.7E-10 74.3 15.0 185 89-280 18-240 (282)
147 1hxi_A PEX5, peroxisome target 98.4 8.1E-07 2.8E-11 69.3 8.9 94 251-344 19-114 (121)
148 2kck_A TPR repeat; tetratricop 98.4 1.9E-06 6.6E-11 65.4 10.5 98 248-345 5-107 (112)
149 2fbn_A 70 kDa peptidylprolyl i 98.4 2.9E-06 9.8E-11 72.5 12.5 170 153-343 10-185 (198)
150 2c2l_A CHIP, carboxy terminus 98.4 2.8E-06 9.4E-11 77.2 13.0 190 112-311 4-200 (281)
151 3upv_A Heat shock protein STI1 98.4 1.9E-06 6.6E-11 67.5 10.4 108 215-324 6-121 (126)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 1.3E-06 4.4E-11 72.1 9.7 94 250-343 12-107 (164)
153 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.7E-11 69.6 10.1 104 215-320 20-125 (142)
154 3q49_B STIP1 homology and U bo 98.4 3.1E-06 1.1E-10 67.2 11.6 98 247-344 7-106 (137)
155 1na0_A Designed protein CTPR3; 98.4 1.1E-05 3.6E-10 62.4 14.5 92 149-241 11-105 (125)
156 3sz7_A HSC70 cochaperone (SGT) 98.4 3E-06 1E-10 69.9 11.5 107 213-321 11-119 (164)
157 2lni_A Stress-induced-phosphop 98.4 2.7E-06 9.3E-11 66.9 10.8 99 246-344 13-113 (133)
158 1elw_A TPR1-domain of HOP; HOP 98.4 4E-06 1.4E-10 64.1 11.0 97 248-344 3-101 (118)
159 4gcn_A Protein STI-1; structur 98.3 2.2E-06 7.6E-11 67.4 9.0 94 250-343 9-111 (127)
160 2dba_A Smooth muscle cell asso 98.3 6.4E-06 2.2E-10 66.1 11.9 94 250-343 29-127 (148)
161 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4E-10 64.5 13.4 110 212-324 27-142 (148)
162 3q49_B STIP1 homology and U bo 98.3 4.7E-06 1.6E-10 66.1 10.6 101 211-313 7-109 (137)
163 2vyi_A SGTA protein; chaperone 98.3 1.2E-05 3.9E-10 62.8 12.7 113 180-295 14-128 (131)
164 1wao_1 Serine/threonine protei 98.3 1.1E-05 3.9E-10 79.0 14.8 117 154-273 13-134 (477)
165 3dss_A Geranylgeranyl transfer 98.3 0.0002 7E-09 65.7 21.8 229 89-324 41-318 (331)
166 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.7E-10 75.3 13.7 129 178-308 147-292 (336)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-05 4.3E-10 78.3 14.3 94 249-342 317-413 (457)
168 2kck_A TPR repeat; tetratricop 98.2 5.8E-06 2E-10 62.6 9.4 100 214-315 7-111 (112)
169 2fbn_A 70 kDa peptidylprolyl i 98.2 1.5E-06 5E-11 74.3 6.6 148 118-269 10-176 (198)
170 3q7a_A Farnesyltransferase alp 98.2 8.1E-05 2.8E-09 68.7 18.4 214 126-343 68-330 (349)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.6E-05 5.4E-10 62.0 12.0 107 216-325 7-122 (131)
172 3rkv_A Putative peptidylprolyl 98.2 1.3E-05 4.4E-10 65.9 10.8 64 281-344 63-126 (162)
173 2xev_A YBGF; tetratricopeptide 98.2 7.2E-06 2.5E-10 64.2 8.5 90 254-343 7-104 (129)
174 1hxi_A PEX5, peroxisome target 98.1 1E-05 3.5E-10 62.9 9.1 96 217-314 21-118 (121)
175 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.8E-09 70.8 18.4 158 151-308 59-243 (434)
176 4b4t_Q 26S proteasome regulato 98.1 2.6E-05 8.7E-10 75.3 13.8 164 180-343 57-244 (434)
177 2hr2_A Hypothetical protein; a 98.1 9.8E-06 3.3E-10 65.4 8.8 91 253-343 15-130 (159)
178 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4E-10 62.8 8.9 96 249-344 4-108 (131)
179 2xev_A YBGF; tetratricopeptide 98.1 4.2E-05 1.4E-09 59.7 11.9 99 219-319 8-114 (129)
180 1ihg_A Cyclophilin 40; ppiase 98.1 2.2E-05 7.4E-10 74.2 11.9 138 179-337 224-363 (370)
181 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.1E-10 64.7 9.5 62 282-343 90-157 (164)
182 4gcn_A Protein STI-1; structur 98.1 6E-05 2.1E-09 59.0 12.5 59 181-240 11-69 (127)
183 3ro3_A PINS homolog, G-protein 98.1 2.3E-05 7.8E-10 63.6 10.5 96 215-310 51-158 (164)
184 3k9i_A BH0479 protein; putativ 98.1 3.2E-06 1.1E-10 65.3 4.7 82 262-343 3-89 (117)
185 3rkv_A Putative peptidylprolyl 98.1 1.4E-05 4.6E-10 65.7 8.5 76 249-324 63-141 (162)
186 3dss_A Geranylgeranyl transfer 98.0 0.0011 3.8E-08 60.8 21.6 217 124-344 41-304 (331)
187 2if4_A ATFKBP42; FKBP-like, al 98.0 1.9E-05 6.5E-10 73.7 9.9 146 179-344 180-328 (338)
188 3k9i_A BH0479 protein; putativ 98.0 5.7E-06 1.9E-10 63.9 4.6 91 226-317 3-97 (117)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.7E-10 74.1 8.5 114 214-344 180-293 (338)
190 3n71_A Histone lysine methyltr 98.0 0.00011 3.7E-09 71.8 14.4 124 222-345 318-465 (490)
191 2l6j_A TPR repeat-containing p 97.9 3.7E-05 1.3E-09 58.1 8.1 91 248-338 3-101 (111)
192 1dce_A Protein (RAB geranylger 97.9 0.00086 2.9E-08 67.0 19.0 167 164-333 46-244 (567)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00025 8.4E-09 69.1 14.0 127 178-307 268-412 (457)
194 2hr2_A Hypothetical protein; a 97.8 2.6E-05 8.9E-10 62.9 5.8 69 251-319 59-140 (159)
195 3ma5_A Tetratricopeptide repea 97.8 9E-05 3.1E-09 55.2 8.4 65 280-344 6-70 (100)
196 2kat_A Uncharacterized protein 97.8 5.6E-05 1.9E-09 57.8 7.3 76 268-343 4-81 (115)
197 1na3_A Designed protein CTPR2; 97.8 0.00012 4E-09 53.0 8.7 81 249-329 9-91 (91)
198 1ihg_A Cyclophilin 40; ppiase 97.7 0.00022 7.7E-09 67.2 11.8 117 149-268 225-360 (370)
199 1zu2_A Mitochondrial import re 97.6 4.5E-05 1.5E-09 61.4 3.9 85 260-344 13-120 (158)
200 3n71_A Histone lysine methyltr 97.5 0.0004 1.4E-08 67.8 10.6 123 187-309 318-463 (490)
201 3qwp_A SET and MYND domain-con 97.5 0.00046 1.6E-08 66.2 10.9 116 256-389 294-427 (429)
202 2kat_A Uncharacterized protein 97.4 0.00031 1.1E-08 53.5 6.8 79 232-312 4-84 (115)
203 2l6j_A TPR repeat-containing p 97.4 0.00044 1.5E-08 52.0 7.5 66 279-344 2-67 (111)
204 1klx_A Cysteine rich protein B 97.3 0.0034 1.2E-07 49.6 12.3 111 192-311 9-127 (138)
205 1klx_A Cysteine rich protein B 97.3 0.0037 1.3E-07 49.4 12.4 109 92-208 10-127 (138)
206 3bee_A Putative YFRE protein; 97.3 0.0011 3.8E-08 48.3 8.3 67 279-345 4-73 (93)
207 1dce_A Protein (RAB geranylger 97.3 0.0051 1.7E-07 61.4 15.8 149 192-343 43-220 (567)
208 3qww_A SET and MYND domain-con 97.3 0.00056 1.9E-08 65.6 8.1 104 261-382 310-431 (433)
209 1zu2_A Mitochondrial import re 97.2 0.00019 6.4E-09 57.8 3.6 74 265-345 62-148 (158)
210 1na3_A Designed protein CTPR2; 97.2 0.0042 1.4E-07 44.4 10.3 61 180-241 11-71 (91)
211 1pc2_A Mitochondria fission pr 97.1 0.0025 8.6E-08 50.7 9.0 91 279-395 30-125 (152)
212 3ma5_A Tetratricopeptide repea 97.1 0.0022 7.7E-08 47.3 8.4 62 178-240 7-68 (100)
213 3mkq_A Coatomer beta'-subunit; 96.9 0.06 2.1E-06 56.1 19.9 41 61-103 667-707 (814)
214 1wy6_A Hypothetical protein ST 96.9 0.035 1.2E-06 42.5 12.5 141 188-347 17-157 (172)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0069 2.3E-07 44.2 8.7 64 255-318 6-72 (99)
216 3ly7_A Transcriptional activat 96.8 0.025 8.5E-07 52.2 13.9 137 176-314 192-343 (372)
217 3qww_A SET and MYND domain-con 96.8 0.0091 3.1E-07 57.2 11.5 93 225-317 310-423 (433)
218 3qwp_A SET and MYND domain-con 96.8 0.014 4.9E-07 55.8 12.8 101 219-319 293-414 (429)
219 2kc7_A BFR218_protein; tetratr 96.7 0.0035 1.2E-07 45.9 6.6 59 287-345 6-65 (99)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.3E-06 53.7 20.0 130 116-275 633-762 (814)
221 3bee_A Putative YFRE protein; 96.5 0.02 6.9E-07 41.5 9.2 78 246-324 3-85 (93)
222 3mkq_B Coatomer subunit alpha; 96.5 0.27 9.2E-06 40.0 16.4 130 52-204 12-141 (177)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.024 8.3E-07 42.0 8.6 73 249-321 5-86 (104)
224 3ly7_A Transcriptional activat 96.2 0.18 6.3E-06 46.5 15.9 72 177-253 276-347 (372)
225 3mkq_B Coatomer subunit alpha; 96.2 0.15 5E-06 41.6 13.5 130 154-307 12-141 (177)
226 1nzn_A CGI-135 protein, fissio 95.8 0.053 1.8E-06 41.4 8.6 65 279-343 33-102 (126)
227 3u64_A Protein TP_0956; tetrat 95.6 0.038 1.3E-06 48.9 8.1 87 265-351 179-276 (301)
228 1pc2_A Mitochondria fission pr 95.5 0.048 1.6E-06 43.3 7.6 72 247-318 30-108 (152)
229 1qsa_A Protein (soluble lytic 95.5 2.3 8E-05 42.4 24.7 249 49-309 76-347 (618)
230 1y8m_A FIS1; mitochondria, unk 95.1 0.63 2.2E-05 36.1 12.4 91 278-394 36-130 (144)
231 4gns_B Protein CSD3, chitin bi 94.5 0.22 7.4E-06 50.8 11.2 54 289-342 345-398 (754)
232 2v5f_A Prolyl 4-hydroxylase su 94.3 0.22 7.5E-06 36.7 8.3 65 280-344 4-75 (104)
233 3u64_A Protein TP_0956; tetrat 94.2 1.9 6.4E-05 38.2 14.8 114 159-275 133-266 (301)
234 4h7y_A Dual specificity protei 93.7 0.35 1.2E-05 38.0 8.3 56 262-318 73-131 (161)
235 3lvg_A Clathrin heavy chain 1; 93.0 0.0095 3.3E-07 56.4 -1.8 181 9-199 82-325 (624)
236 3lvg_A Clathrin heavy chain 1; 92.5 0.0068 2.3E-07 57.4 -3.4 213 44-270 53-325 (624)
237 1nzn_A CGI-135 protein, fissio 92.5 0.73 2.5E-05 35.1 8.3 35 284-318 77-111 (126)
238 1wy6_A Hypothetical protein ST 92.2 3.1 0.00011 32.0 16.4 145 149-312 7-156 (172)
239 3o48_A Mitochondria fission 1 92.1 0.91 3.1E-05 34.8 8.4 65 279-343 38-106 (134)
240 4h7y_A Dual specificity protei 91.7 3.6 0.00012 32.3 11.4 98 175-275 10-120 (161)
241 2p58_C Putative type III secre 90.8 2.3 8E-05 30.5 8.7 89 125-218 20-108 (116)
242 3lpz_A GET4 (YOR164C homolog); 90.6 9.6 0.00033 34.5 21.8 168 149-343 37-215 (336)
243 2uwj_G Type III export protein 90.5 2.1 7.3E-05 30.6 8.2 89 125-218 19-107 (115)
244 1v54_E Cytochrome C oxidase po 90.4 1.3 4.3E-05 32.0 7.1 63 193-257 25-87 (109)
245 2ff4_A Probable regulatory pro 90.1 0.72 2.5E-05 43.3 7.7 68 284-351 174-246 (388)
246 2ff4_A Probable regulatory pro 89.5 1.9 6.6E-05 40.3 10.1 68 182-250 175-246 (388)
247 4ady_A RPN2, 26S proteasome re 87.7 19 0.00065 37.7 16.5 20 187-206 569-588 (963)
248 4ady_A RPN2, 26S proteasome re 87.5 30 0.001 36.2 18.0 214 55-275 384-620 (963)
249 4fhn_B Nucleoporin NUP120; pro 87.4 11 0.00036 41.0 15.5 163 50-231 817-989 (1139)
250 4gns_B Protein CSD3, chitin bi 86.9 22 0.00075 36.3 16.3 126 47-174 250-398 (754)
251 4b4t_P 26S proteasome regulato 86.5 23 0.00078 33.7 17.3 94 182-275 141-244 (445)
252 2wpv_A GET4, UPF0363 protein Y 86.2 18 0.00063 32.3 18.0 169 47-242 35-217 (312)
253 4fhn_B Nucleoporin NUP120; pro 86.2 12 0.00042 40.5 15.1 123 219-347 818-970 (1139)
254 2y69_E Cytochrome C oxidase su 86.0 3 0.0001 31.8 7.1 63 193-257 68-130 (152)
255 4b4t_P 26S proteasome regulato 85.6 25 0.00085 33.4 15.6 93 217-309 141-246 (445)
256 1v54_E Cytochrome C oxidase po 85.4 7.5 0.00026 28.0 8.5 50 274-323 38-87 (109)
257 3lpz_A GET4 (YOR164C homolog); 85.0 22 0.00075 32.2 21.6 168 47-241 37-215 (336)
258 3ffl_A Anaphase-promoting comp 84.0 4 0.00014 32.6 7.4 112 216-341 23-148 (167)
259 3txn_A 26S proteasome regulato 83.1 30 0.001 32.2 16.4 23 184-206 105-127 (394)
260 2wpv_A GET4, UPF0363 protein Y 82.6 26 0.00091 31.3 21.7 169 149-343 35-216 (312)
261 3ffl_A Anaphase-promoting comp 82.4 8.7 0.0003 30.7 8.8 55 152-206 25-91 (167)
262 2uwj_G Type III export protein 81.2 13 0.00044 26.7 9.5 87 24-116 20-106 (115)
263 2p58_C Putative type III secre 80.5 14 0.00047 26.6 9.9 87 24-116 21-107 (116)
264 3o48_A Mitochondria fission 1 79.9 18 0.00062 27.6 9.5 71 246-316 37-113 (134)
265 3txn_A 26S proteasome regulato 79.9 39 0.0013 31.4 18.9 294 12-346 21-345 (394)
266 2y69_E Cytochrome C oxidase su 78.4 16 0.00055 27.9 8.5 55 269-323 76-130 (152)
267 1zbp_A Hypothetical protein VP 77.9 5 0.00017 35.0 6.5 57 258-314 6-64 (273)
268 1y8m_A FIS1; mitochondria, unk 76.6 24 0.00083 27.3 11.2 71 246-316 36-112 (144)
269 1zbp_A Hypothetical protein VP 75.8 40 0.0014 29.3 12.2 54 187-241 6-59 (273)
270 3ltm_A Alpha-REP4; protein eng 75.1 33 0.0011 28.1 17.9 15 148-162 96-110 (211)
271 1wdy_A 2-5A-dependent ribonucl 74.4 31 0.0011 29.7 11.3 52 16-72 8-62 (285)
272 4b4t_R RPN7, 26S proteasome re 64.4 80 0.0027 29.7 12.3 60 182-241 135-196 (429)
273 3esl_A Checkpoint serine/threo 63.5 62 0.0021 26.7 13.0 82 266-348 61-148 (202)
274 3mv2_A Coatomer subunit alpha; 62.6 86 0.0029 28.0 11.7 60 272-345 196-257 (325)
275 4b4t_R RPN7, 26S proteasome re 62.4 65 0.0022 30.3 11.3 33 312-346 344-376 (429)
276 3ltj_A Alpharep-4; protein eng 62.3 61 0.0021 26.2 18.2 48 146-193 89-136 (201)
277 2qx5_A Nucleoporin NIC96; mRNA 61.7 60 0.0021 32.5 11.1 25 11-36 154-178 (661)
278 2pk8_A Uncharacterized protein 61.4 9 0.00031 26.7 3.6 48 371-426 12-59 (103)
279 1k1a_A B-cell lymphoma 3-encod 58.2 42 0.0014 28.0 8.6 84 17-102 13-101 (241)
280 1wdy_A 2-5A-dependent ribonucl 56.5 40 0.0014 28.9 8.3 114 50-173 7-128 (285)
281 4a1g_A Mitotic checkpoint seri 55.6 72 0.0025 24.9 9.1 49 300-348 84-134 (152)
282 3ltj_A Alpharep-4; protein eng 55.0 82 0.0028 25.4 19.3 155 42-206 25-179 (201)
283 2nsz_A Programmed cell death p 54.2 43 0.0015 25.3 6.9 63 48-111 10-77 (129)
284 2nsz_A Programmed cell death p 52.1 74 0.0025 24.0 8.5 64 150-213 10-78 (129)
285 2wvi_A Mitotic checkpoint seri 50.7 92 0.0032 24.7 9.2 49 300-348 79-129 (164)
286 2d2s_A Exocyst complex compone 49.8 64 0.0022 27.4 8.0 87 83-172 24-116 (235)
287 3ltm_A Alpha-REP4; protein eng 48.2 1.1E+02 0.0037 24.8 19.1 155 42-206 30-184 (211)
288 2ion_A PDCD4, programmed cell 46.6 69 0.0024 25.0 7.2 63 150-212 12-79 (152)
289 2ion_A PDCD4, programmed cell 46.3 37 0.0013 26.6 5.5 63 48-111 12-79 (152)
290 4gq2_M Nucleoporin NUP120; bet 46.1 1.8E+02 0.0062 30.6 12.4 86 219-310 816-926 (950)
291 2d2s_A Exocyst complex compone 45.8 1.1E+02 0.0036 26.1 8.7 30 246-275 88-117 (235)
292 3kea_A K1L; tropism, ANK repea 41.4 81 0.0028 27.4 7.8 118 224-350 103-223 (285)
293 3ygs_P Procaspase 9; apoptosis 39.8 42 0.0014 23.9 4.5 39 161-199 51-89 (97)
294 3ygs_P Procaspase 9; apoptosis 37.9 40 0.0014 24.0 4.2 38 61-98 52-89 (97)
295 4b4t_S RPN3, 26S proteasome re 36.8 1.1E+02 0.0037 29.5 8.1 63 213-275 231-296 (523)
296 4b4t_S RPN3, 26S proteasome re 36.6 2.7E+02 0.0091 26.9 10.7 63 179-241 232-298 (523)
297 4gq2_M Nucleoporin NUP120; bet 35.5 3.4E+02 0.012 28.5 12.5 127 51-192 816-950 (950)
298 2lo3_A SAGA-associated factor 34.7 11 0.00037 21.9 0.5 12 440-451 16-27 (44)
299 3esl_A Checkpoint serine/threo 34.4 1.9E+02 0.0067 23.7 11.1 67 180-248 82-149 (202)
300 3eu9_A Huntingtin-interacting 33.6 1.2E+02 0.0043 24.7 7.5 57 287-344 180-236 (240)
301 2r9g_A AAA ATPase, central reg 33.6 2E+02 0.0068 23.6 8.2 64 80-144 14-85 (204)
302 2fe3_A Peroxide operon regulat 32.4 1.3E+02 0.0045 23.0 6.7 64 202-267 11-74 (145)
303 2xig_A Ferric uptake regulatio 30.8 1.8E+02 0.0062 22.4 7.3 63 202-266 16-78 (150)
304 1oyz_A Hypothetical protein YI 30.6 2.5E+02 0.0086 23.8 19.7 232 67-314 27-267 (280)
305 3bqo_A Telomeric repeat-bindin 30.3 2.3E+02 0.0078 23.3 11.9 60 265-324 94-160 (211)
306 3mkr_B Coatomer subunit alpha; 30.1 1.5E+02 0.0052 26.4 7.3 60 272-345 187-248 (320)
307 2fe3_A Peroxide operon regulat 29.7 1.8E+02 0.0061 22.2 7.1 33 129-161 38-70 (145)
308 1ug3_A EIF4GI, eukaryotic prot 29.4 2.8E+02 0.0096 24.9 9.4 61 48-109 14-78 (339)
309 4aez_C MAD3, mitotic spindle c 29.3 1.5E+02 0.0051 24.9 6.7 51 298-348 131-183 (223)
310 1bd8_A P19INK4D CDK4/6 inhibit 29.0 93 0.0032 23.6 5.5 15 158-172 109-123 (156)
311 3hra_A Ankyrin repeat family p 29.0 1.8E+02 0.0061 23.0 7.5 16 57-73 14-29 (201)
312 3ljn_A Hypothetical protein; a 28.5 1.7E+02 0.0058 26.2 8.0 83 256-340 177-266 (364)
313 2yru_A Steroid receptor RNA ac 28.1 92 0.0032 23.1 4.8 43 98-140 47-89 (118)
314 3eiq_C Programmed cell death p 27.7 3.5E+02 0.012 24.6 15.6 211 47-262 56-301 (358)
315 2xig_A Ferric uptake regulatio 27.7 1.9E+02 0.0065 22.3 7.0 36 126-161 40-75 (150)
316 1n11_A Ankyrin; clathrin, BAND 27.2 2.1E+02 0.007 26.4 8.5 299 16-347 17-336 (437)
317 3ljn_A Hypothetical protein; a 27.0 1.5E+02 0.0052 26.5 7.4 12 61-72 65-76 (364)
318 3aji_A 26S proteasome non-ATPa 26.7 2.6E+02 0.0087 22.7 8.5 18 17-34 10-27 (231)
319 1ug3_A EIF4GI, eukaryotic prot 26.6 1.2E+02 0.0042 27.3 6.4 150 12-172 13-166 (339)
320 4ets_A Ferric uptake regulatio 26.3 1.5E+02 0.0053 23.2 6.2 71 195-266 14-86 (162)
321 2w57_A Ferric uptake regulatio 24.7 1.9E+02 0.0064 22.3 6.4 61 101-162 6-67 (150)
322 2p1h_A APAF-1, apoptotic prote 24.5 1.4E+02 0.0049 20.7 5.2 38 160-197 49-86 (94)
323 3bu8_A Telomeric repeat-bindin 23.9 2.5E+02 0.0085 23.4 6.9 68 229-296 88-162 (235)
324 1bpo_A Protein (clathrin); cla 23.4 4.8E+02 0.016 24.7 12.0 139 126-277 343-484 (494)
325 2p1h_A APAF-1, apoptotic prote 23.4 1.9E+02 0.0064 20.0 7.2 63 29-96 24-86 (94)
326 4ets_A Ferric uptake regulatio 22.8 1.6E+02 0.0055 23.1 5.7 58 104-162 25-84 (162)
327 1k1a_A B-cell lymphoma 3-encod 22.5 1.7E+02 0.0059 23.9 6.4 19 124-142 18-36 (241)
328 3bge_A Predicted ATPase; struc 22.5 2.9E+02 0.01 22.6 7.1 46 81-126 8-56 (201)
329 3eiq_C Programmed cell death p 22.0 1.8E+02 0.0063 26.4 6.6 26 49-75 221-246 (358)
330 2zu6_B Programmed cell death p 21.6 4.2E+02 0.014 23.4 14.3 77 181-259 169-247 (307)
331 3i5p_A Nucleoporin NUP170; hel 21.5 5.5E+02 0.019 24.7 11.3 34 312-345 214-247 (525)
332 4fke_A Aminopeptidase N; zinc 21.3 7.1E+02 0.024 25.9 16.3 23 218-240 763-785 (909)
333 3b7b_A Euchromatic histone-lys 21.2 1.3E+02 0.0046 24.6 5.4 52 17-73 15-68 (237)
334 2o03_A Probable zinc uptake re 20.9 1.7E+02 0.0058 21.9 5.3 46 82-127 15-60 (131)
335 2o03_A Probable zinc uptake re 20.3 1.7E+02 0.0058 21.9 5.2 38 226-264 23-60 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-32 Score=274.83 Aligned_cols=333 Identities=8% Similarity=-0.018 Sum_probs=299.3
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHH----------------------------------
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT---------------------------------- 50 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------------------------- 50 (475)
|.+++..+|+.++.+|.+.|++++|.++|+.+.+.+ +.+...+..
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 556678899999999999999999999999999875 233333333
Q ss_pred ----HHHHHHhCCCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 51 ----LVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 51 ----li~~~~~~gg~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
++.+|.++| ++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++.+
T Consensus 274 ~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 274 LYMLKLNKTSHED-ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHTTSCTTTTHH-HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 355667788 99999999999987 799999999999999999999999999999765 3477889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999764 5578899999999999999999999999875 347889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC------
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM------ 275 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 275 (475)
+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 567889999999999999999999999999873 3457899999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 276 -PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 276 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..|+ ..+|..++.+|...|++++|.+.++++.+.+|.++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55787 7899999999999999999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-33 Score=281.92 Aligned_cols=374 Identities=11% Similarity=0.004 Sum_probs=317.5
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC--CCChhHHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIG 85 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~--~~~~~~~~~li~ 85 (475)
++...|+.++..|.+.|+++.|..+++.+.+. .|+..++..++..|.+.| ++++|..+|+.+. .++..+|+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHH
Confidence 57778999999999999999999999999865 578889999999999999 9999999999984 578999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 86 GYARLGLSTDAIDLFRQMQIS---------------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
+|.+.|++++|+++|+++... |.+++..+|..++.++.+.|++++|...|+++.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 999999999999999953322 23446789999999999999999999999999987532 33332
Q ss_pred --------------------------------------HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 038542 151 --------------------------------------NALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAM 190 (475)
Q Consensus 151 --------------------------------------~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 190 (475)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2335677789999999999999987 789999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+ ..+.+..++..++.+|.+.|++++|.+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999875 44778899999999999999999999999986 445678899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
+|+++ ...| +..+|+.++.+|.+.|++++|.++|+++.+..|.+..+|..++.+|.+.|++++|.++++.+.+..-.
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 473 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY- 473 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988 3334 68899999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCC
Q 038542 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTT 397 (475)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 397 (475)
....|.. +...+...++.+++.+.++++.+...+.|..|+.
T Consensus 474 -~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 474 -DPLLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -CHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -ChHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 1111211 1122345678889999999888777777888874
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-30 Score=257.09 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCCcc
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA---------LEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 148 (475)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888888888888888888888888888888888776543 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888775 35778888888888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
+.|++++|.+++++|.+. |..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888875 888888888888887765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.1e-29 Score=245.82 Aligned_cols=200 Identities=12% Similarity=0.127 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC---------H
Q 038542 94 TDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD---------V 163 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 163 (475)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456677788877776654 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 164 DKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 164 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999996 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCAR 294 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~ 294 (475)
.+. |+.||..+|++||.+|++.|++++|.++|++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 986 99999999999999999999999999999999 8999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.6e-25 Score=210.44 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=281.5
Q ss_pred CCCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHH
Q 038542 7 SPNK-FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSA 82 (475)
Q Consensus 7 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~ 82 (475)
.|+. ..+..+...+...|+++.|...++.+.+.. +.+..+|..+...|.+.| ++++|...|+++.+ | +..+|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcchHHHHHH
Confidence 3544 345555567788899999999999888864 667788999999999998 99999999998753 3 5668999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+..++.+.|++++|++.|+++... .|+ ...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999875 454 4566677778888999999999999998874 335678899999999999
Q ss_pred CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 162 DVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 162 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
++++|...|+++. ..+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+.
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999875 2356788889999999999999999999988863 34578889999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
+.+ ..+.+...|..+..++.+.|++++|.+.|+++ .. +++..+|..+...+...|++++|...++++.+..|.+..
T Consensus 263 al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 263 AIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 987 33445778999999999999999999999988 22 347889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999998763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.8e-24 Score=204.95 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=281.2
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 93 (475)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.| ++++|...++...+ .+..+|+.+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456778899999999999998874 555667777888888888 99999999987653 4778999999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 94 TDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
++|++.|+++... .| +..++..+..++...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999875 45 45678999999999999999999999999875 33566788899999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh
Q 038542 173 MNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249 (475)
Q Consensus 173 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 249 (475)
+.. .+..+|+.+...|...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++..... .+.+.
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 752 367899999999999999999999999999864 445778899999999999999999999998863 23357
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+..+|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++.+..|.+..++..++.+|..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 88999999999999999999999998 4445 578899999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhC
Q 038542 328 LLRWEKKTKIREVMDKR 344 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~~ 344 (475)
.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV 334 (388)
T ss_dssp TTCHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.7e-23 Score=201.38 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=264.7
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~ 85 (475)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+...|.+.| ++++|...|+++.+ .+..+|..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45678888899999999999999999999874 667889999999999999 99999999998864 36889999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDE----ITMVTV------------LSACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
+|.+.|++++|++.|+++... .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999875 4543 454444 344888999999999999999874 447788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL------- 219 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l------- 219 (475)
+..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 3478999999999999999999999999998753 3334444444
Q ss_pred -----HHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 038542 220 -----LSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTL 287 (475)
Q Consensus 220 -----l~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 287 (475)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..+..++.+.|++++|...++++ ...| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999874 343 457899999999999999999999987 4445 68999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
..+|...|++++|...++++++..|.++..+..+..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 99999999999999999999999999988888887543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.7e-22 Score=194.71 Aligned_cols=309 Identities=9% Similarity=-0.019 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
+...+..+.... +.+...+..+...|.+.| ++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444443 567788999999999999 99999999998753 4788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc---cHHHHH------------HHHHHhcCCHHHHHHHH
Q 038542 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV---GLCNAL------------IDMFAKCGDVDKALKLF 170 (475)
Q Consensus 106 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~ 170 (475)
.+ +.+..++..+...+...|++++|...++.+.+... .+. ..+..+ ...|.+.|++++|...|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 34677888999999999999999999999988642 233 455555 44599999999999999
Q ss_pred HhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 171 RSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 171 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
+++. ..+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+.+... .+.
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9875 3477899999999999999999999999998863 567889999999999999999999999999863 223
Q ss_pred ChhHHHHH------------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 248 KIEHYGCM------------VDMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 248 ~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...+..+ ...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444 78899999999999999998 34454 45788899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 310 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-21 Score=194.55 Aligned_cols=330 Identities=9% Similarity=-0.066 Sum_probs=255.6
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCC-----------
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD----------- 76 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~----------- 76 (475)
||..+|..+..++...|+++.|.+.++.+++.. +.+..++..+...|.+.| ++++|...|+++.+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG-KFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 677777777777778888888888888777764 455667777777787777 8888877776652110
Q ss_pred -----------------------------------------------------------------------hhHHHHHHH
Q 038542 77 -----------------------------------------------------------------------SVSWSAMIG 85 (475)
Q Consensus 77 -----------------------------------------------------------------------~~~~~~li~ 85 (475)
...|..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 222333333
Q ss_pred HHHH---cCChhHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYAR---LGLSTDAIDLFRQMQI-----SGVCP--------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
.+.. .|++++|+.+|+++.. ..-.| +..++..+...+...|++++|...+..+.+.... ..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 3333 6778888888877776 21111 2345666777788888888888888888877543 777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 78888888888888888888887653 356788889999999999999999999998864 34567888888999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cC
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEAN----PIIWRTLISACCA---RG 295 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~---~g 295 (475)
|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++ +..++ ..+|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999998873 3345678888999999999999999999887 22222 4488889999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999899999999999999999999999988764
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.3e-20 Score=186.29 Aligned_cols=329 Identities=10% Similarity=-0.032 Sum_probs=275.7
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
..+......+.+.|++++|...|+.+++.. |+..++..+...|.+.| ++++|...|+++.+ .+..+|..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 356667788899999999999999999985 78999999999999999 99999999998753 3678999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCC----------------------------------------------------------
Q 038542 88 ARLGLSTDAIDLFRQMQISGVC---------------------------------------------------------- 109 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~---------------------------------------------------------- 109 (475)
.+.|++++|+..|+++...+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999775421
Q ss_pred -------------------CC-HHHHHHHHHHHh---ccCChHHHHHHHHHHHH-----cCC--------CCCccHHHHH
Q 038542 110 -------------------PD-EITMVTVLSACT---DLGALEVGKWVESFIEK-----QMV--------NRSVGLCNAL 153 (475)
Q Consensus 110 -------------------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 153 (475)
|+ ...+......+. +.|++++|...+..+.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11 222222222233 38999999999999988 311 2235678888
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
...|...|++++|...|+++. .++...|..+...|...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999874 2347888999999999999999999999998864 4467788899999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
|...++.+.+ -.+.+...+..+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 33446778999999999999999999999987 2233 567899999999999999999999999998
Q ss_pred CCCCCCc------hHHHHHHHHHh---ccChhHHHHHHHHHHhCC
Q 038542 310 NEPMHES------NYVLLSHIYAK---LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 310 ~~p~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~ 345 (475)
..|.++. .+..++.+|.. .|++++|...++...+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 8877755 89999999999 999999999999987743
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.4e-19 Score=168.90 Aligned_cols=312 Identities=11% Similarity=-0.013 Sum_probs=252.8
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHH
Q 038542 10 KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGG 86 (475)
Q Consensus 10 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~ 86 (475)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...| ++++|...|++..+ .+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4567777888999999999999999999875 566788999999999999 99999999998753 367899999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 87 YARLGLSTDAIDLFRQMQISGVCP----DEITMVTV------------LSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
|...|++++|+..|+++... .| +...+..+ ...+...|++++|...+..+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 99999999999999999875 45 33344433 467888999999999999998874 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----------
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV---------- 217 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---------- 217 (475)
..+...|...|++++|...|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 8899999999999999999988753 367889999999999999999999999998753 23333332
Q ss_pred --HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038542 218 --GLLSACSHCGLVDKGREYFDSMKNDFGIIPKI----EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLIS 289 (475)
Q Consensus 218 --~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 289 (475)
.+...+...|++++|...++.+.+. . +.+. ..+..+...+...|++++|.+.+++. ...| +..+|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2356688899999999999988874 2 1222 23556778889999999999999887 3344 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
.+...|++++|...++++.+..|.+...+..+..++...+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887777777665443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.6e-19 Score=179.86 Aligned_cols=325 Identities=10% Similarity=-0.009 Sum_probs=240.6
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 88 (475)
.|..+...+.+.|++++|...++.+++.. +.+...+..+...|.+.| ++++|.+.|++..+ .+..+|..+..+|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44555566666777777777777776654 455666666677777766 77777777766542 25566666667777
Q ss_pred HcCChhHHHHHHH-------------------------------------------------------------------
Q 038542 89 RLGLSTDAIDLFR------------------------------------------------------------------- 101 (475)
Q Consensus 89 ~~g~~~~A~~~~~------------------------------------------------------------------- 101 (475)
..|++++|+..|+
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 7776666666553
Q ss_pred ------------------------------------------HHHHCCCCCC--------HHHHHHHHHHHhccCChHHH
Q 038542 102 ------------------------------------------QMQISGVCPD--------EITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 102 ------------------------------------------~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a 131 (475)
++.+. .|+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 33221 222 11344445566777888888
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
...+..+.+.. |+..++..+...|...|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 88888888764 446778888888888999999999888764 3467788888999999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----P----IEAN 280 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~ 280 (475)
+.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...|+++ + ....
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 334677888888999999999999999988873 3445678888899999999999999999886 1 1112
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 281 PIIWRTLISACCAR----------GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 281 ~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
...+..+...+... |++++|...++++.+..|.+...+..++.+|...|++++|.+.+++..+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33345556677777 999999999999999999999999999999999999999999999887643
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=8.6e-19 Score=166.08 Aligned_cols=296 Identities=10% Similarity=-0.003 Sum_probs=248.2
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 120 (475)
+...+..+...+.+.| ++++|...|++..+ .+..+|..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456777888899998 99999999998753 368899999999999999999999999998753 336678888999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCC--CCccHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 038542 121 ACTDLGALEVGKWVESFIEKQMVN--RSVGLCNAL------------IDMFAKCGDVDKALKLFRSMN---GRTIVSWTS 183 (475)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 183 (475)
.+...|++++|...+..+.+.... .+...+..+ ...|...|++++|...|+++. ..+...|..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999886420 244455444 588999999999999999875 346788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH----------
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG---------- 253 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---------- 253 (475)
+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 557788999999999999999999999999874 222333332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 254 --CMVDMLCRSGRVKEAHEFIQKM-PIEAN-P----IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 254 --~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999987 33343 3 23556778999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-18 Score=162.48 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=220.4
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 118 (475)
+.+..++..+...+...| ++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 556666777777777777 88888888887653 255667777788888888888888888887753 3356677777
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCh
Q 038542 119 LSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRG 194 (475)
Q Consensus 119 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 194 (475)
...+...| ++++|...+..+.+.. +.+...+..+..+|...|++++|...|++.. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8888888888887764 3356678888888888888888888888764 23456777788888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------CCCChhHHHHHHHHHHHcCCHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-------IIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
++|...|++..+.. +.+...+..+...+...|++++|...++...+... .+.....+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888763 45567788888888888999999888888776321 13345788888999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HhccCh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-AKLLRW 331 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 331 (475)
|...+++. ...| +...|..+...+...|++++|.+.++++.+..|.++..+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99998887 2233 6778888999999999999999999999999999888888888887 444543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-17 Score=155.26 Aligned_cols=288 Identities=10% Similarity=-0.012 Sum_probs=242.2
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHH
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWS 81 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~ 81 (475)
+.+.|...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+.+.| ++++|..+|+++.+ .+...|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHH
Confidence 456677788888999999999999999999999875 556667777888888888 99999999998754 3678999
Q ss_pred HHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+...| ++++|++.|++..... +.+...+..+...+...|++++|...+..+.+... .+...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998763 33577888999999999999999999999998753 3567788899999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhcCCCH
Q 038542 161 GDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--------VPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 161 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~~~~~~g~~ 229 (475)
|++++|...|++..+ .+...|..+...|...|++++|...|++..+.. .+.+..++..+..++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999998753 367889999999999999999999999987742 133457888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC-CARGELK 298 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~~~ 298 (475)
++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999873 3446788999999999999999999999998 5566 677888887777 4556543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.4e-18 Score=162.97 Aligned_cols=277 Identities=12% Similarity=-0.024 Sum_probs=226.0
Q ss_pred CCCCHHHHHH-HHhccCC--C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 038542 58 CEGGIELGRK-VFDEMSE--R-----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129 (475)
Q Consensus 58 ~gg~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 129 (475)
.| +++.|.. .|++..+ | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 38 ~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 35 8889988 8876543 1 35678899999999999999999999999864 446778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHH---------------HHHHHHHc
Q 038542 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTS---------------VIAGLAMH 191 (475)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~ 191 (475)
+|...+..+.+.. +.+..++..+...|...|++++|...|+++... +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999999875 447788999999999999999999999987532 2222221 23344489
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998864221 5788999999999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CchHHHHHHHHHhccChhHHHHH
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH-----------ESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
.|+++ ...| +..+|..+...+...|++++|...++++.+..|.+ ..+|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3334 68899999999999999999999999999887766 67899999999999999999988
Q ss_pred HH
Q 038542 338 RE 339 (475)
Q Consensus 338 ~~ 339 (475)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.2e-18 Score=162.38 Aligned_cols=261 Identities=10% Similarity=-0.074 Sum_probs=216.5
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56679999999999999999999999998863 4467889999999999999999999999999875 346788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRT-------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 221 (475)
+|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999875321 123344578899999999999999999986422 16889999999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|...|+++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456789999999999999999999999988 4445 58899999999999999999
Q ss_pred HHHHHHHHHhCCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 300 AESITKRLIGNEPM------------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 300 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
|...++++++..|. +...|..|..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987655 356789999999999999998877643
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=3e-19 Score=168.60 Aligned_cols=250 Identities=15% Similarity=0.135 Sum_probs=111.3
Q ss_pred hCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 57 SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 57 ~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
++| ++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 556 899999999998655 4899999999999999999999965 2577788889999999999999999888
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 216 (475)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 34577888899999999999998888763 67779999999999999999999999876 368
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 296 (475)
..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+ -...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad--~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH--HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh--hHHHHHHHHHHCCC
Confidence 88999999999999999988876 2678899999999999999999776666554443 34468888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--cChhHHHHHH
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKL--LRWEKKTKIR 338 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 338 (475)
+++|..+++..++.++.....|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999998888888888888888765 3444444443
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=3.9e-17 Score=163.87 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
...+..+...|.+.| ++++|.+.|++..+ .++.+|..+..+|.+.|++++|++.|+++.... +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456777888899998 99999999998853 478899999999999999999999999998864 3467788889999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCcc-----------------------------------------------------
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVG----------------------------------------------------- 148 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------------------------------- 148 (475)
+...|++++|...+..+ .....+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999988633 211110000
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHcCChHH
Q 038542 149 --------------LCNALIDMFAK--------CGDVDKALKLFRSMNGR---T-------IVSWTSVIAGLAMHGRGLE 196 (475)
Q Consensus 149 --------------~~~~li~~y~~--------~g~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~ 196 (475)
....+...|.. .|++++|..+|+++.+. + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 22222222222 24788999999887643 2 2356777788899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038542 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275 (475)
Q Consensus 197 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 275 (475)
|...|++..+. .|+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999985 566888999999999999999999999999873 3456788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 276 PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 276 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++.+.+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 567899999999999999999999999999999999999999999999999999999999987644
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.6e-16 Score=144.80 Aligned_cols=267 Identities=11% Similarity=0.020 Sum_probs=214.9
Q ss_pred hCCCCHHHHHHHHhccCCCC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 038542 57 SCEGGIELGRKVFDEMSERD----SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 57 ~~gg~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 132 (475)
..| +++.|...++.....+ ......+.++|...|++++|+..++. . -+|+..++..+...+...++.+.|.
T Consensus 11 ~~g-~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIG-SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTT-CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHH-HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 446 9999999988876543 23556678999999999999987654 2 3567778888888899999999999
Q ss_pred HHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 133 WVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
+.++.+...+..| +..++..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 9999998876444 566777788999999999999999999 5678899999999999999999999999999864 5
Q ss_pred CHHHH---HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038542 212 DDVAF---VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRT 286 (475)
Q Consensus 212 ~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 286 (475)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54321 22334455679999999999999984 5568889999999999999999999999997 4445 7888999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 287 LISACCARGELKL-AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 287 li~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++..+...|+.++ +.++++++.+.+|.++.+ .+...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999876 678999999999988643 34556666666665443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=5.3e-19 Score=166.99 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=138.8
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (475)
+.|+++.|.++++.+ ++..+|..|..++.+.| ++++|.+.|.+. +|..+|..++.++.+.|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g-~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcC-CHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567899999999888 22359999999999999 999999999764 577799999999999999999999877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 038542 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181 (475)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 181 (475)
..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77664 5567888999999999999999988874 367789999999999999999999999988 489
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..++.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.....++..|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHH
Confidence 99999999999999999999988 3789999999999999999999654443 23355556679999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----CCCchHHHHHHHHHhccChh
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR--GELKLAESITKRLIGNEP-----MHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 332 (475)
.|++++|..+++.. +..+ ....|+-|..++++. ++..+..+.|..-....| .+...|.-+...|...++|+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999999887 5554 677888887777765 455555555554333334 56778999999999999999
Q ss_pred HHHHHH
Q 038542 333 KKTKIR 338 (475)
Q Consensus 333 ~a~~~~ 338 (475)
.|..+.
T Consensus 300 ~A~~tm 305 (449)
T 1b89_A 300 NAIITM 305 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.9e-17 Score=152.64 Aligned_cols=258 Identities=11% Similarity=-0.031 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
..|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666665542 2244555556666666666666666666666553 23455666666666
Q ss_pred HhcCCHHHHHHHHHhcCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNGR---TIVSWTSV--------------IA-GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
...|++++|...|+++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6666666666666655321 12222222 22 3667788999999999998864 4467888899
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999998873 3446788999999999999999999999987 3334 688899999999999999
Q ss_pred HHHHHHHHHHHhCCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 298 KLAESITKRLIGNEPM------------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++|.+.++++.+..|. +...+..+..+|...|++++|..+++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999998887 677899999999999999999988854
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.3e-16 Score=152.04 Aligned_cols=254 Identities=12% Similarity=-0.017 Sum_probs=134.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
+..+...|.+.| ++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+..
T Consensus 68 ~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444555554 55555555554432 244455555555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCC---------CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNR---------SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R---TIVSWTSVIAGLAM 190 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~ 190 (475)
.|++++|...+..+.+..... ...++..+...|.+.|++++|...|+++.+ | +..+|..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 555555555555555432110 112223345566666666666666665531 1 45566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
.|++++|+..|++..+.. +.+..++..+..+|...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|..
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666542 334556666666666666666666666666552 22335566666666666666666666
Q ss_pred HHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 271 FIQKM-PIEA-------------NPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 271 ~~~~m-~~~p-------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
.|+++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 66665 0000 245677777777777777777666554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.3e-16 Score=150.29 Aligned_cols=283 Identities=13% Similarity=0.005 Sum_probs=213.2
Q ss_pred HHHcCCCcHHHHH-HHHHHHHhcC-CC--ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 038542 19 ACAGIGDLNLGKS-VHGAVLKFQF-GD--DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLG 91 (475)
Q Consensus 19 ~~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 91 (475)
++.-.|+++.|.. .+....+..- .| +...+..+...|.+.| ++++|...|+++.+ .+..+|..+..+|...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 3445578888888 8877665421 11 3456777888888888 99999999988753 36778888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHH----------------HHHH
Q 038542 92 LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN----------------ALID 155 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~ 155 (475)
++++|++.|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999888753 346778888888889999999999999988876533 222221 2333
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG--R---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
.+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|+++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 34 88999999999988752 2 46788899999999999999999999988863 446788899999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA------------NPIIWRTLISACCARGEL 297 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~~~~~~li~~~~~~g~~ 297 (475)
+|...|+.+.+. .+.+...+..+..+|.+.|++++|...|+++ ...| ...+|..+..++...|+.
T Consensus 269 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 269 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999998863 3446788899999999999999999999887 1111 268899999999999999
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
++|..++++.+
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 99998877543
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=174.90 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=113.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997763 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 219 LLSACSHCGLV-DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 219 ll~~~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
||.++++.|+. ++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 99999999984 7899999999997 9999999999999888887655555444333
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.5e-16 Score=144.92 Aligned_cols=246 Identities=10% Similarity=0.041 Sum_probs=202.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDE--ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+.-....|++++|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999877543 4543 3556678899999999999876543 24567778888999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 162 DVDKALKLFRSMN----GR-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 162 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777888999999999999999987 567888999999999999999999999
Q ss_pred HHhhhhcCCCCChhHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHY---GCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 3553211 23344555569999999999998 333478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhccChhH-HHHHHHHHHhC
Q 038542 312 PMHESNYVLLSHIYAKLLRWEK-KTKIREVMDKR 344 (475)
Q Consensus 312 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 344 (475)
|.++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887754
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=9.1e-16 Score=143.30 Aligned_cols=258 Identities=12% Similarity=-0.013 Sum_probs=152.2
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~ 85 (475)
+...+......+...|++++|..+++.+.+.. +.+...+..+...|.+.| ++++|.+.|++..+ .+..+|..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 33455666777788888888888888887764 456677777888888887 88888888877643 36677888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHH--------------HH-HHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDE-ITMVTV--------------LS-ACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
.|...|++++|++.++++.... |+. ..+..+ .. .+...|++++|...+..+.+.. +.+..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 8888888888888888887652 322 222222 11 2455566666666666665553 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 5555666666666666666655543 2234555555555555555555555555555432 23344555555555555
Q ss_pred CCHHHHHHHHHHhhhhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIP-----------KIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
|++++|...++.+.+. ...+ +...+..+..++.+.|++++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555555555555432 1110 23344444455555555555544444
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.3e-15 Score=147.43 Aligned_cols=340 Identities=9% Similarity=-0.084 Sum_probs=229.9
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh-----c---CCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-----
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-----Q---FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE----- 74 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~----- 74 (475)
.....|+.+...+...|+.++|.+.++..++. + .+....+|+.+...|...| ++++|...|++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhc
Confidence 34557888889999999999999999988653 1 1234567899999999999 99999988876531
Q ss_pred ------CChhHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HhccCChHHHHHHHHHHHHcC
Q 038542 75 ------RDSVSWSAMIGGYARL--GLSTDAIDLFRQMQISGVCPD-EITMVTVLSA---CTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 75 ------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 142 (475)
....+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+.+.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1355777777666654 4689999999999875 454 4444444444 345677788888998888764
Q ss_pred CCCCccHHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 038542 143 VNRSVGLCNALIDMFAK----CGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 143 ~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 215 (475)
+.+..++..+...+.. .|++++|.+.+++.. ..+...|..+...|...|++++|+..|++..+.. +-+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3355566666555554 467788999998754 3467889999999999999999999999998863 334566
Q ss_pred HHHHHHHHhcC-------------------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038542 216 FVGLLSACSHC-------------------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275 (475)
Q Consensus 216 ~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 275 (475)
+..+..+|... +..+.|...++..... .+.+...+..+...|...|++++|.+.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 66666555321 2356677777777652 2345667888999999999999999999987
Q ss_pred CCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHhC------------------------CCCCCchHHHHHHHHH
Q 038542 276 PIEANPII----WRTLIS-ACCARGELKLAESITKRLIGN------------------------EPMHESNYVLLSHIYA 326 (475)
Q Consensus 276 ~~~p~~~~----~~~li~-~~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~ 326 (475)
...|+... +..+.. .....|+.++|+..++++++. +|.++.+|..|+.+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444332 233332 234678999999888877654 4667789999999999
Q ss_pred hccChhHHHHHHHHHHhCCCccCCCccE
Q 038542 327 KLLRWEKKTKIREVMDKRGMKKIPGSTL 354 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 354 (475)
..|++++|.+.+++..+.+-......+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999988766433333333
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=6e-14 Score=139.25 Aligned_cols=317 Identities=12% Similarity=0.030 Sum_probs=159.7
Q ss_pred cchHHHHHHHHHc----CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCCC-ChhHH
Q 038542 10 KFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSER-DSVSW 80 (475)
Q Consensus 10 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~~-~~~~~ 80 (475)
...+..+-..+.. .+++++|...+....+.| +...+..|...|.. .+ +.++|.+.|++..+. +...+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 3344444444444 555555555555555542 33444445555554 44 555555555554332 44455
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHHH
Q 038542 81 SAMIGGYAR----LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCNA 152 (475)
Q Consensus 81 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (475)
..|...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|...+....+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555555 455555555555555443 33333344444433 445555555555544432 3334444
Q ss_pred HHHHHHh----cCCHHHHHH------------------------------------HHHhcCC-CChhHHHHHHHHHHH-
Q 038542 153 LIDMFAK----CGDVDKALK------------------------------------LFRSMNG-RTIVSWTSVIAGLAM- 190 (475)
Q Consensus 153 li~~y~~----~g~~~~A~~------------------------------------~~~~~~~-~~~~~~~~li~~~~~- 190 (475)
|..+|.. .++.++|.. .|++..+ .+..++..+...|..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 4444444 444444444 4444322 233344444444444
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 191 ---HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 191 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.++.++|+..|++..+.| +...+..+...|... ++.++|..+|+...+. + +...+..+..+|...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 455555555555554433 233334444444444 5555555555555542 2 334445555555544
Q ss_pred C---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh----ccCh
Q 038542 263 G---RVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVLLSHIYAK----LLRW 331 (475)
Q Consensus 263 g---~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 331 (475)
| ++++|.+.|++.--..++..+..|...|.. .+++++|...+++..+.+ ++..+..|..+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 4 455566666555112345556666666665 566666666666666554 24456666666665 5666
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|...+++..+.+
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665544
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.1e-13 Score=137.43 Aligned_cols=298 Identities=10% Similarity=-0.005 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCC-CChhHHHHHHHHHHH----cCChhHHHHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSE-RDSVSWSAMIGGYAR----LGLSTDAIDL 99 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 99 (475)
+...+....+. .+...+..|...|.. .+ +++.|...|++..+ .++..+..|...|.. .+++++|++.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34555555543 466777788888887 67 99999999998765 478899999999999 9999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHHH
Q 038542 100 FRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKALKLFR 171 (475)
Q Consensus 100 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 171 (475)
|++..+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|...|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 56667777777777 789999999999998876 56778889999988 889999999998
Q ss_pred hcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhh
Q 038542 172 SMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVDKGREYFDSMKND 242 (475)
Q Consensus 172 ~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 242 (475)
+..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...|.. .++.++|..+|+...+.
T Consensus 176 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 176 KAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 7653 466777778888877 788888888888877654 34455555555553 55666666666655542
Q ss_pred cCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCC-------------------------------------CCCH
Q 038542 243 FGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKMPI-------------------------------------EANP 281 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-------------------------------------~p~~ 281 (475)
+ +...+..+..+|.. .++.++|.++|++.-- ..+.
T Consensus 253 -~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 253 -G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp -T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred -C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 1 23334444444444 4445555554444311 1233
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCC
Q 038542 282 IIWRTLISACCARG---ELKLAESITKRLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 282 ~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 345 (475)
..+..|...+...| +.++|.+.+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 44444444444433 5556666666665553 34566677777776 677777777777776655
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=9.9e-18 Score=170.50 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccC-------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMS-------ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 117 (475)
..+||+||++|+++| ++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 358999999999999 9999999997763 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 038542 118 VLSACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----TIVSWTSVIAGLAMH 191 (475)
Q Consensus 118 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 191 (475)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998888766555555554444321 123444455555554
Q ss_pred C
Q 038542 192 G 192 (475)
Q Consensus 192 g 192 (475)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.7e-13 Score=135.93 Aligned_cols=367 Identities=8% Similarity=-0.029 Sum_probs=246.6
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CChhHHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGG 86 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~~~~~~~li~~ 86 (475)
|...|..++.. .+.|+++.|..+++.+++.- +.+...|..++..+.+.| +++.|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 55678888874 67899999999999999863 667788999999999998 99999999999875 677778777753
Q ss_pred H-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 87 Y-ARLGLSTDAID----LFRQMQI-SGVCP-DEITMVTVLSACTD---------LGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 87 ~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
. ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++........+|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34566666654 6665543 24444 34455555544433 56777777777776652111001122
Q ss_pred HHHHHHH-------------HhcCCHH-----------------------------------------------------
Q 038542 151 NALIDMF-------------AKCGDVD----------------------------------------------------- 164 (475)
Q Consensus 151 ~~li~~y-------------~~~g~~~----------------------------------------------------- 164 (475)
....... .+.++++
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2111100 0011122
Q ss_pred -------HHHHHHHhcCC---CChhHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 165 -------KALKLFRSMNG---RTIVSWTSVIAGLAM-------HGRGL-------EAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 165 -------~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
.|..+|++... .+...|...+..+.+ .|+.+ +|..+|++..+.-.+.+...+..++
T Consensus 249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 33344444331 245677777777765 68887 8999999988632234577888889
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCC-h-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcC
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIPK-I-EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISA-CCARG 295 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~-~~~~g 295 (475)
..+.+.|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 999999999999999999886 2454 2 57888899999999999999999988 33332 2333222222 33689
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC-ccC-CCccEEEECCEEEEEEeCCCCCcc
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM-KKI-PGSTLIELDNEIYEFVCGDKSHHQ 373 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 373 (475)
+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+- .+. ...-|..+.. |....+....
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~----~e~~~G~~~~ 481 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA----FESNIGDLAS 481 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH----HHHHSSCHHH
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH----HHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999887642 221 1112311111 2222334566
Q ss_pred HHHHHHHHHHHH
Q 038542 374 SKEIYEMLDEMG 385 (475)
Q Consensus 374 ~~~~~~~l~~l~ 385 (475)
...+.....+..
T Consensus 482 ~~~~~~r~~~~~ 493 (530)
T 2ooe_A 482 ILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 677766666555
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-15 Score=135.07 Aligned_cols=225 Identities=11% Similarity=-0.046 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--C----ccHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR--S----VGLC 150 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 150 (475)
...|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776654 556666666666677777777777766666542111 1 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
..+...|.+.|++++|...|++....+.. ...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 55556666666666666655554321100 123444455555555555555531 222334445555555555555
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555542 1223444555555555555555555555544 1122 34455555555555555555555555555
Q ss_pred hCC
Q 038542 309 GNE 311 (475)
Q Consensus 309 ~~~ 311 (475)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 444
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.8e-15 Score=131.92 Aligned_cols=220 Identities=7% Similarity=-0.035 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-------hhHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---T-------IVSW 181 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~ 181 (475)
...+..+...+...|++++|...+..+++.. .+..++..+..+|...|++++|...|++..+. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888999999999999999999987 78889999999999999999999999987531 1 5788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999985 4554 345566889999999999886 334456788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.|++++|...++++ ...| +..+|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988 3333 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 038542 340 VMDKR 344 (475)
Q Consensus 340 ~m~~~ 344 (475)
...+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=7.3e-15 Score=129.03 Aligned_cols=195 Identities=13% Similarity=0.002 Sum_probs=150.8
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 144 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888888888888888888887643 356788888888888889999998888888764 44566778888
Q ss_pred HHHhcC-----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 221 SACSHC-----------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 221 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
.++... |++++|...++...+. -+.+...+..+..+|...|++++|...|++. ....+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999988863 2335678888999999999999999999887 1116888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.++...|++++|...++++++.+|.++..+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888654
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=3.1e-14 Score=129.47 Aligned_cols=241 Identities=12% Similarity=-0.052 Sum_probs=173.8
Q ss_pred HcCChhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 038542 89 RLGLSTDAIDLFRQMQISGV--CP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 165 (475)
..|++++|++.|+++.+... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776531 11 34566667777777788888888887777764 3356677778888888888888
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 166 ALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 166 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
|...|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877652 35678888888888888888888888888875 344444444555556678899999999777763
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.+++...+ .++..+...++.++|.+.+++. ...| +..+|..+...+...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 3667777788888888888876 3333 2578889999999999999999999999999987754
Q ss_pred hHHHHHHHHHhccChhHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888888887765
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.8e-14 Score=129.63 Aligned_cols=249 Identities=8% Similarity=-0.024 Sum_probs=123.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTD 124 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 124 (475)
.....+.+.| ++++|...|++..+ | +...|..+...|...|++++|++.|++....+..|+ ...|..+...+..
T Consensus 8 ~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNN-NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444455555 66666666555432 1 344555555566666666666666665555221111 1224455555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|+..|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543 223445555555555555555555555554421 3334444441222233555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGL---VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (475)
++..+.. +.+...+..+..++...|+ .++|...++...+...-.|+.. - .
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-------------------------~ 218 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-------------------------D 218 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------H
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------H
Confidence 5544431 1223333333333333333 3333333333332111111100 0 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
....+|..+...+...|++++|.+.++++++.+|.++.+...+......
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 0124677788888889999999999999999999887776666555443
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.9e-12 Score=129.70 Aligned_cols=304 Identities=13% Similarity=0.105 Sum_probs=222.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038542 33 HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 33 ~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 109 (475)
++..++.. +-+...|..++. +.+.| +++.|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 44555553 567889999998 47777 99999999999875 3 6778999999999999999999999999975 4
Q ss_pred CCHHHHHHHHHHH-hccCChHHHHH----HHHHHHHc-CCCC-CccHHHHHHHHHHh---------cCCHHHHHHHHHhc
Q 038542 110 PDEITMVTVLSAC-TDLGALEVGKW----VESFIEKQ-MVNR-SVGLCNALIDMFAK---------CGDVDKALKLFRSM 173 (475)
Q Consensus 110 p~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~ 173 (475)
|+...|...+... ...|+.+.|.+ +|+..++. |..| +..+|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7777776666532 34566666654 77766643 5444 45677777776655 78999999999986
Q ss_pred CC-CC---hhHHHHHHHH--------------------------HH----------------------------------
Q 038542 174 NG-RT---IVSWTSVIAG--------------------------LA---------------------------------- 189 (475)
Q Consensus 174 ~~-~~---~~~~~~li~~--------------------------~~---------------------------------- 189 (475)
.+ |. ...|...... |.
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 54 21 1223211110 00
Q ss_pred -----Hc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHhhhh
Q 038542 190 -----MH----GRG----LEAVALFEEMLEAGVPPDDVAFVGLLSACSH-------CGLVD-------KGREYFDSMKND 242 (475)
Q Consensus 190 -----~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~ 242 (475)
.. ++. ..|..+|++.... .+-+...|...+..+.+ .|+++ +|..+|+...+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~- 314 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS- 314 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-
Confidence 00 011 2445566666654 23456677777777764 79987 89999999886
Q ss_pred cCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 243 FGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-P-IIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 243 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.+.| +...|..++..+.+.|++++|..+|+++ ...|+ . ..|..++..+.+.|+++.|..+|+++.+..|.+...|
T Consensus 315 -~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 315 -TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp -TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred -HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 3344 5788999999999999999999999988 45553 3 5899999999999999999999999999988776666
Q ss_pred HHHHHH-HHhccChhHHHHHHHHHHhC
Q 038542 319 VLLSHI-YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 319 ~~l~~~-~~~~g~~~~a~~~~~~m~~~ 344 (475)
...+.+ +...|++++|..+|+...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 655444 34689999999999988764
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=2.8e-12 Score=135.01 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=228.6
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCC
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 92 (475)
..-+...|...|.+++|.++|+... ......+.++. ..+ ++++|.++.++.. +..+|..+..++...|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 3345667778888888888888752 11222233332 556 8999999988764 57889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 93 STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377788899999999999999999999888764 44444556999999999999655443
Q ss_pred cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aW 1253 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTW 1253 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHH
Confidence 4556777888999999999999999999984 379999999999999999999988763 55889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--cC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL--LR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~ 330 (475)
..+..++...|++..|......+ ..++..+..++..|...|.+++|+.+++..++++|.+...|.-|..+|++. ++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 99999999999999999877753 345667778999999999999999999999999998888998888888765 34
Q ss_pred hhHHHHHH
Q 038542 331 WEKKTKIR 338 (475)
Q Consensus 331 ~~~a~~~~ 338 (475)
..++.+.|
T Consensus 1332 lmEhlk~f 1339 (1630)
T 1xi4_A 1332 MREHLELF 1339 (1630)
T ss_pred HHHHHHHH
Confidence 44444444
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.7e-13 Score=130.45 Aligned_cols=247 Identities=10% Similarity=0.034 Sum_probs=205.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCccHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNAL 153 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (475)
+...|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++++++... .+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 3568999999999999999999999999985 45 56788888889999996 9999999999998853 377889999
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCCH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-CGLV 229 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~ 229 (475)
..+|.+.|++++|+..|+++. ..+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999875 3477899999999999999999999999999874 4467888889999988 6665
Q ss_pred HHH-----HHHHHHhhhhcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 038542 230 DKG-----REYFDSMKNDFGIIPKIEHYGCMVDMLCRSG--RVKEAHEFIQKMPIEA-NPIIWRTLISACCARG------ 295 (475)
Q Consensus 230 ~~a-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g------ 295 (475)
++| +..++..... -+-+...|..+..+|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 4778777752 2335678888888898888 6899999988875455 5778888998888874
Q ss_pred ---CHHHHHHHHHHH-HhCCCCCCchHHHHHHHHHhc
Q 038542 296 ---ELKLAESITKRL-IGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 296 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 328 (475)
..++|.++++++ .+.+|.....|..+...+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999888888777766543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=2.6e-13 Score=119.08 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++..++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455555555666666666666666555432 2234455555555555666666666665555543 223445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 156 MFAKC-----------GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
+|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 55555555544432 1133444444445555555555555555544443 34444444555
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
++...|++++|...|+...+. .+.+...+..+..++.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544431 122334444444444444444444444443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=4.4e-13 Score=120.20 Aligned_cols=195 Identities=7% Similarity=-0.000 Sum_probs=126.5
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 445555566666666666666666543 2245566666666666777777777776666543 335556666666677
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 301 (475)
..|++++|..+++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777766665 12333 3455666666777777777777777665 2222 4666777777777777777777
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++++.+..|.+...+..+..+|...|++++|.+.++.+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777777667777777777777777777777776653
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=7.7e-13 Score=118.63 Aligned_cols=206 Identities=12% Similarity=-0.013 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888888888888888888888887642 3355566666666777777777777777766653 2244455555555
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
|...|++++|.+.|+++. ..+..| +...+..+...+...|++++|..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEAS-------------------------------QDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHHT-------------------------------TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-------------------------------hCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555543 311222 233444444555555555555555
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.++|.+.++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5555442 1223455555666666666666666666555 222 24556666777777777777777777777777776
Q ss_pred CCch
Q 038542 314 HESN 317 (475)
Q Consensus 314 ~~~~ 317 (475)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=5.6e-13 Score=116.99 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=116.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
..++..+...|...|++++|...|++.. ..+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344555555555555555555555443 2234555556666666666666666666665542 33455566666666
Q ss_pred hcC-CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 224 SHC-GLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 224 ~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666655 122232 455566666666666666666666655 2222 45666666666667777777
Q ss_pred HHHHHHHHHhCCC-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 300 AESITKRLIGNEP-MHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 300 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...++++.+..| .+...+..+...+...|+.+.+...++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777666666 6666666666666667777777666666654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.5e-12 Score=118.53 Aligned_cols=223 Identities=13% Similarity=-0.045 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCN 151 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (475)
++.++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566677777777777777777777777662 244555556666666 777777777777766654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 152 ALIDMFAK----CGDVDKALKLFRSMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 152 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
.+..+|.. .|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666665442 244556666666666 666666666666666644 34445555555
Q ss_pred Hhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 038542 223 CSH----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKM-PIEANPIIWRTLISACCA 293 (475)
Q Consensus 223 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~ 293 (475)
|.. .+++++|...|+...+. + +...+..+..+|.. .+++++|...|++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 555 56666666666665542 2 33444555555555 55555555555544 111 24444455555555
Q ss_pred ----cCCHHHHHHHHHHHHhCCC
Q 038542 294 ----RGELKLAESITKRLIGNEP 312 (475)
Q Consensus 294 ----~g~~~~a~~~~~~~~~~~p 312 (475)
.+++++|.+.++++.+.+|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 5555555555555555554
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=2.9e-12 Score=116.51 Aligned_cols=223 Identities=10% Similarity=-0.065 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKALKLFRSMNG-RTIVSWTSVI 185 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 185 (475)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667777888899999999999999999983 355778889999999 9999999999998754 3778899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 186 AGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 186 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67888889999998 99999999999999874 4 5677888888
Q ss_pred HHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh--
Q 038542 258 MLCR----SGRVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVLLSHIYAK-- 327 (475)
Q Consensus 258 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 327 (475)
.|.. .+++++|...|++.--..+...+..+...+.. .+++++|...+++..+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8988 99999999999987222367888889999999 9999999999999999876 5688899999999
Q ss_pred --ccChhHHHHHHHHHHhCC
Q 038542 328 --LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 328 --~g~~~~a~~~~~~m~~~~ 345 (475)
.+++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988766
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.3e-13 Score=122.83 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=121.0
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
...+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34555566666666777777666666532 245666666677777777777777777766653 33556666677777
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~ 301 (475)
...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...|..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776652 2335566667777777777777777777766 222 25667777777777777777777
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++++.+..|.+...+..++.+|...|++++|.+.+++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777653
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.3e-13 Score=122.89 Aligned_cols=214 Identities=13% Similarity=0.034 Sum_probs=121.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
...+|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~----------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-S----------- 88 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-----------
Confidence 44566666666777777777777777666532 2244455555555555666666666555555442 1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
.+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+
T Consensus 89 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 89 --------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 233445555555555666666666666655543 33455566666666666777777776
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|.
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 6666652 2334566667777777777777777777766 222 35777888888888889999999999999888888
Q ss_pred CCchHHHHHHHH
Q 038542 314 HESNYVLLSHIY 325 (475)
Q Consensus 314 ~~~~~~~l~~~~ 325 (475)
++..+..+....
T Consensus 226 ~~~~~~~~~~l~ 237 (243)
T 2q7f_A 226 HMLALHAKKLLG 237 (243)
T ss_dssp CHHHHHHHTC--
T ss_pred hHHHHHHHHHHH
Confidence 877666554443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1.6e-12 Score=117.93 Aligned_cols=227 Identities=9% Similarity=-0.085 Sum_probs=183.9
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC----hhHHHHH
Q 038542 10 KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD----SVSWSAM 83 (475)
Q Consensus 10 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~----~~~~~~l 83 (475)
...+......+...|+++.|...++.+++.. +.+...+..+...|.+.| ++++|...|++..+ ++ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3455666778899999999999999999874 455668889999999999 99999999988754 22 3358999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH-HHHHhcCC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI-DMFAKCGD 162 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 162 (475)
...|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+...++.. +.+..++..+. ..|. .++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 999999999999999999998853 3366788999999999999999999999988763 34666777777 5554 569
Q ss_pred HHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhcCCCH
Q 038542 163 VDKALKLFRSMN---GRTIVSWTSVIAGLAMHGR---GLEAVALFEEMLEAG-VPPD------DVAFVGLLSACSHCGLV 229 (475)
Q Consensus 163 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~~~~~~g~~ 229 (475)
+++|...|++.. ..+...|..+...+...|+ .++|...|++..+.. -.|+ ..+|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999875 3356788888888888888 888999999987642 1233 24677788888889999
Q ss_pred HHHHHHHHHhhh
Q 038542 230 DKGREYFDSMKN 241 (475)
Q Consensus 230 ~~a~~~~~~m~~ 241 (475)
++|...|+...+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988886
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.6e-12 Score=114.04 Aligned_cols=209 Identities=13% Similarity=-0.019 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 34455666666666666666666666655532 2234444444455555555555555555554432
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 233 (475)
..+..+|..+...|... |++++|...++++.+.+..|+ ...+..+..++...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12334455555555556 666666666666555222232 345566666666667777777
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE--ANPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
..++.+.+. .+.+...+..+...+.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 766666652 2234566666777777777777777777665 112 35566666677777788888888888888777
Q ss_pred CCCCCchHH
Q 038542 311 EPMHESNYV 319 (475)
Q Consensus 311 ~p~~~~~~~ 319 (475)
.|.++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777655443
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=4.2e-13 Score=131.43 Aligned_cols=311 Identities=10% Similarity=0.050 Sum_probs=191.4
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCH---HHHHHHHhccCCCChhHHHHHHHHHHHcC-
Q 038542 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI---ELGRKVFDEMSERDSVSWSAMIGGYARLG- 91 (475)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g- 91 (475)
+...+.+.|++++|.+++..+.+.| .+ ..+..|..+|...| +. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~--~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YS--EAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CC--TGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 4566778899999999999998887 23 34445666676666 77 89999999988778888888888666665
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---
Q 038542 92 ----LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE---VGKWVESFIEKQMVNRSVGLCNALIDMFAKCG--- 161 (475)
Q Consensus 92 ----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--- 161 (475)
++++|+..|++....|.. + .+..+...|...+..+ .+.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999987633 3 4444555555444332 3344444444443 3456666777777776
Q ss_pred -CHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----CCHHHHH
Q 038542 162 -DVDKALKLFRSMNGRTIVSWTSVIAGLAMHG---RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGR 233 (475)
Q Consensus 162 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~ 233 (475)
+.+.+..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..|...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4555666666666666667777777777777 7778888888877776 45555555566666554 6777888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDM-L--CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG-----ELKLAESITK 305 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~ 305 (475)
.+|+... +-+...+..|..+ | ...+++++|.+.|++.--..+...+..|...|. .| ++++|...|+
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8777765 2244555556555 3 356777888887777622235666666666665 44 7777887777
Q ss_pred HHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 038542 306 RLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 346 (475)
+.. |.++..+..|..+|.. ..++++|.+.+++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 776 5566777777777766 3377777777777776653
No 52
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=1.3e-11 Score=130.10 Aligned_cols=281 Identities=10% Similarity=0.055 Sum_probs=223.9
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (475)
..+++++|.++.+.+ .+..+|..+..++.+.| ++++|.+.|.+. .|...|..++.++.+.|++++|++.|.
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G-~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC-CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556665555533 45778999999999998 999999999764 678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 038542 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181 (475)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 181 (475)
..++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHH
Confidence 887754 34333345888899999988644442 2 345567778999999999999999999985 589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHH
Confidence 99999999999999999999976 4568899999999999999999886653 33467778899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----CCCchHHHHHHHHHhccChh
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR--GELKLAESITKRLIGNEP-----MHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 332 (475)
.|.+++|..+++.. +..| ....|.-|...+.+. ++..++.++|..-....| .+...|.-+...|.+.|+|+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999877 5554 455676666666654 566667777776555544 45667899999999999999
Q ss_pred HHHHH
Q 038542 333 KKTKI 337 (475)
Q Consensus 333 ~a~~~ 337 (475)
.|...
T Consensus 1373 nA~~t 1377 (1630)
T 1xi4_A 1373 NAIIT 1377 (1630)
T ss_pred HHHHH
Confidence 99843
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.5e-13 Score=132.76 Aligned_cols=265 Identities=12% Similarity=-0.023 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----ITMVTVLSACTDLGALEVGKWVESFIEKQ----M-VNRSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 149 (475)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+.+..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455566667777777777777776642 1122 34555666666777777777777666543 1 1123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGR---------TIVSWTSVIAGLAMHGR-----------------GLEAVALFEE 203 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 203 (475)
+..+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 666777777777777777777664321 23466777777777788 7777777777
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 204 MLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 204 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
..+. +..| ...++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5442 1111 2246677777888888888888888877653111112 23677788888888888888888877
Q ss_pred C----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 275 M----PIEA----NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 275 m----~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
. +... ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 1111 2467778888899999999999999988765422 234778889999999999999999988
Q ss_pred HHhC
Q 038542 341 MDKR 344 (475)
Q Consensus 341 m~~~ 344 (475)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.8e-13 Score=130.36 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-Cc
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD----EITMVTVLSACTDLGALEVGKWVESFIEKQ----MVNR-SV 147 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 147 (475)
...+......+...|++++|+..|++....+ +.+ ...+..+...+...|+++.|...+..+.+. +.+| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445555555666666666666666655532 112 134444555555666666666665554432 1111 13
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGR--------------------GLEAV 198 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 198 (475)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455556666666666666666655432 11 2355666666666666 66666
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHH
Q 038542 199 ALFEEMLEA----GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 199 ~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 269 (475)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666665432 11111 235666666777777777777777666542111122 235666777777777777777
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHHHHHHHHHhccChhHHH
Q 038542 270 EFIQKM----PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 270 ~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 335 (475)
..+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777665 11111 4566677777777888888888877776543221 346667777888888888888
Q ss_pred HHHHHHHh
Q 038542 336 KIREVMDK 343 (475)
Q Consensus 336 ~~~~~m~~ 343 (475)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=6.8e-13 Score=120.46 Aligned_cols=235 Identities=9% Similarity=-0.115 Sum_probs=145.7
Q ss_pred CHHHHHHHHhccCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 038542 61 GIELGRKVFDEMSER-------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 133 (475)
++++|...|+++.+. +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 566666666555431 34456666666667777777777776666542 2345666666666777777777777
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.+..+++.. +.+..++..+..+|.+.|++++|...|+++. .|+...+...+..+...|++++|...+++..... ++
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 777766653 2345666777777777777777777777664 2333333333444455678888888887766653 33
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWR 285 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 285 (475)
+...+ .++..+...++.++|...+...... .|+ ...+..+...|.+.|++++|...|+++ ...|+. +.
T Consensus 177 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 177 EQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 43333 3666677777778888777766542 221 467777888888888888888888877 555532 22
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 038542 286 TLISACCARGELKLAESIT 304 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~ 304 (475)
....++...|++++|.+.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3344566677777776665
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=3e-13 Score=126.23 Aligned_cols=265 Identities=12% Similarity=0.011 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD----EITMVTVLSACTDLGALEVGKWVESFIEKQ----MVN-RSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 149 (475)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+....+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566667777777777777766642 112 234555666666777777777776665432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGR--------------------GLEAVAL 200 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 200 (475)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777888777777766432 12 2366777777777787 7888877
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHH
Q 038542 201 FEEMLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 201 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776432 1111 1346677778888888999988888877643111111 23677788888899999999888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHHHHHHHHHhccChhHHHHH
Q 038542 272 IQKM----PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 272 ~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
+++. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..+..+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876 11112 5567788888999999999999999887654322 33677899999999999999999
Q ss_pred HHHHHhC
Q 038542 338 REVMDKR 344 (475)
Q Consensus 338 ~~~m~~~ 344 (475)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888763
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=9e-13 Score=125.44 Aligned_cols=227 Identities=10% Similarity=0.072 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-VDKALKLFRSMN---GRTIVSWTSVIAG 187 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 187 (475)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|++.. ..+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777778889999999999999999875 3467889999999999997 999999999876 3477899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-cCCHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR-SGRVK 266 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 266 (475)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++.+.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999874 456788999999999999999999999999973 34467889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc--------
Q 038542 267 EA-----HEFIQKM-PIEA-NPIIWRTLISACCARG--ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL-------- 329 (475)
Q Consensus 267 ~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 329 (475)
+| ...|++. .+.| +...|..+...+...| ++++|.+.++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677766 4455 6789999999998888 689999999998 888999899999999999875
Q ss_pred -ChhHHHHHHHHH-Hh
Q 038542 330 -RWEKKTKIREVM-DK 343 (475)
Q Consensus 330 -~~~~a~~~~~~m-~~ 343 (475)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=9.8e-13 Score=126.54 Aligned_cols=295 Identities=13% Similarity=0.012 Sum_probs=180.0
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCCCHHHHHHHHhccCC-----C----
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEGGIELGRKVFDEMSE-----R---- 75 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-----~---- 75 (475)
....+......+...|++++|...++.+.+.+ +.+ ..++..+...|...| ++++|...|++..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHH
Confidence 34455556667777888888888888887763 223 245667777777777 88877777765421 1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGA--------------------LEV 130 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~ 130 (475)
...+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244666677777777777777777766654210 001 2234444444444554 444
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
|...+....+. +.....+ ...+|..+...|...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44333333221 1111111 12355666666667777777777776665421
Q ss_pred C-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 038542 209 V-PPD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM---- 275 (475)
Q Consensus 209 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---- 275 (475)
. .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 235666777777788888888777776542111111 456777778888888888888888776
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHHHHhccChhH
Q 038542 276 PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNE------PMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 276 ~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
+..++ ..++..+...+...|++++|...++++.+.. +....++..+..+|...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11112 5577888889999999999999999987653 2224467778888888887643
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=8.6e-12 Score=122.83 Aligned_cols=297 Identities=12% Similarity=-0.053 Sum_probs=201.8
Q ss_pred CChhHHHHHHHHHHhCCCCHHHHHHHHhccC-----------C-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 038542 43 DDIHVQNTLVHMYGSCEGGIELGRKVFDEMS-----------E-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---- 106 (475)
Q Consensus 43 ~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 106 (475)
.....||.|...|...| +.++|++.|++.. . ...++|+.+..+|...|++++|+..+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34567888888898888 9999988887642 1 24678999999999999999999999887642
Q ss_pred -C-CCC-CHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH---HhcCCHHHHHHHHHhcC---C
Q 038542 107 -G-VCP-DEITMVTVLSACTD--LGALEVGKWVESFIEKQMVNRSVGLCNALIDMF---AKCGDVDKALKLFRSMN---G 175 (475)
Q Consensus 107 -g-~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~~~g~~~~A~~~~~~~~---~ 175 (475)
+ ..+ ...++.....++.. .+++++|...|++.++... .++..+..+..++ ...|+.++|.+.|++.. .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 24455555545443 4578899999999888742 2455555555553 34566677777777643 3
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 038542 176 RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 176 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
.+...+..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++...+. .+.+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 455666666555544 467788999998887764 456677888888999999999999999988863 3335566
Q ss_pred HHHHHHHHHHc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 252 YGCMVDMLCRS-------------------GRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 252 ~~~li~~~~~~-------------------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
+..+..+|... +..++|...+++. ...| +..+|..+...+...|++++|...|+++++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 76666665432 2345666666665 2223 4556777888888888888898888888888
Q ss_pred CCCCCc---hHHHHHHH-HHhccChhHHHHHHHHHHhC
Q 038542 311 EPMHES---NYVLLSHI-YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 311 ~p~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 344 (475)
.|++.. .+..+... +...|++++|...+++..+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 765433 23333333 34678888888888777653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=3e-12 Score=108.85 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+..... ..+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 4455566666666666666666666666542 33455566666666666666666666666654 22334455555666
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
.+...+++++|...+.+. ...| +...|..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 666666776666666665 2223 56667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhC
Q 038542 336 KIREVMDKR 344 (475)
Q Consensus 336 ~~~~~m~~~ 344 (475)
+.+++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777776553
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=7.8e-13 Score=130.33 Aligned_cols=208 Identities=9% Similarity=-0.059 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-DKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
++.+...+....+. .+.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555544433 233566677777777777777 77777777654 23567888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc--------CCHH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHC---------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS--------GRVK 266 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 266 (475)
..+. .|+...+..+..++... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 57778888888888888 9999999999988863 344577888888888888 8899
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKM-PIEA----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
+|.+.|++. ...| +...|..+..++...|++++|.+.++++.+.+|.+..++..+..++...|++++|.+.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 3344 7889999999999999999999999999999999999999999999999999999876543
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=3.4e-11 Score=111.58 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACT-------DLGAL-------EVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
++|+.+|++..... +-+...|..+...+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666676666531 224445555555443 24664 6777777777763122345567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCHHHHHH
Q 038542 160 CGDVDKALKLFRSMNG--R-TIV-SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDKGRE 234 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 234 (475)
.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777643 2 333 67777777778888888888888877753 33344444333332 23688888888
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-P---IEA--NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887763 2335677778888888888888888888877 1 344 46678888888888888888888888888
Q ss_pred hCCCCCC
Q 038542 309 GNEPMHE 315 (475)
Q Consensus 309 ~~~p~~~ 315 (475)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8887654
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2.1e-12 Score=124.72 Aligned_cols=267 Identities=10% Similarity=-0.010 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-Ch----hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DS----VSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCP-DE 112 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 112 (475)
...+..+...+...| ++++|...|++..+ | +. ..|..+...|...|++++|+..|++.... +-.| ..
T Consensus 48 ~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAG-DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455666667777 77777777776643 2 22 36777777777778888887777776542 1112 23
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCCCccHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGD-----------------VDKALKLF 170 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~ 170 (475)
.++..+...+...|++++|...+....+.. .+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 456666677777888888877777766431 11234467777888888888 88888877
Q ss_pred HhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 171 RSMNG-----R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD----DVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 171 ~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 76532 1 234777788888999999999999988765311 112 236778888999999999999999
Q ss_pred HHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 237 DSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 237 ~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
+.......-.. ....+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88765311111 2467888899999999999999999877 1111 2457788889999999999999999
Q ss_pred HHHHhCCC
Q 038542 305 KRLIGNEP 312 (475)
Q Consensus 305 ~~~~~~~p 312 (475)
+++.+..+
T Consensus 367 ~~al~~~~ 374 (411)
T 4a1s_A 367 EQHLQLAX 374 (411)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99988764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=5.2e-12 Score=107.38 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=137.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
+..+|..+...|.+.|++++|++.|++.. ..+..+|..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55678888888888888888888888764 3467788888888999999999999998887763 4456677777888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
+...++++.+...+..... -.+.+...+..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999988876 33446678888889999999999999999887 3444 678899999999999999999
Q ss_pred HHHHHHHHhCCCCC
Q 038542 301 ESITKRLIGNEPMH 314 (475)
Q Consensus 301 ~~~~~~~~~~~p~~ 314 (475)
.+.++++++.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998865
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=4e-12 Score=118.53 Aligned_cols=270 Identities=13% Similarity=0.026 Sum_probs=156.4
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCCCHHHHHHHHhccCC---------CChhH
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEGGIELGRKVFDEMSE---------RDSVS 79 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---------~~~~~ 79 (475)
+......+...|+++.|...++.+.+.. +.+ ..++..+...|...| ++++|.+.|++..+ ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4444566777888888888888888764 223 356677777777777 88888887766432 12446
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHHHHHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGA--------------------LEVGKWV 134 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 134 (475)
|..+...|...|++++|+..+.+...... .++ ..++..+...+...|+ ++.|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777777888877777777654210 011 2244445555555555 5555544
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CC
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PP 211 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 211 (475)
+....+. +.....+ ....+..+...|...|++++|...+++..+... .+
T Consensus 166 ~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 166 YEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4443321 0011000 122444455555555566555555555443200 01
Q ss_pred C----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------C
Q 038542 212 D----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-------P 276 (475)
Q Consensus 212 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~ 276 (475)
+ ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|...+++. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 225555666666666666666666655432111111 345666677777777777777777665 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 277 IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 277 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
..+ ...++..+...+...|++++|...++++.+..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 111 244677788888888889999888888887654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.6e-11 Score=117.51 Aligned_cols=288 Identities=10% Similarity=0.042 Sum_probs=149.8
Q ss_pred HHcCCCcHHHHHHHHHHHHh--cCCCC--hhHHHHHHHHHH--hCCCCHHHHH-----------HHHhccCC-C-Chh--
Q 038542 20 CAGIGDLNLGKSVHGAVLKF--QFGDD--IHVQNTLVHMYG--SCEGGIELGR-----------KVFDEMSE-R-DSV-- 78 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~li~~~~--~~gg~~~~A~-----------~~f~~~~~-~-~~~-- 78 (475)
+.+.+++++|..+.+.+.+. .+..| ...|-.++..-. -.+ +++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~-~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLE-YLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-HHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh-hcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 34678899999998888664 22223 333333333211 111 222233 34443321 1 111
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----
Q 038542 79 ----SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR---- 145 (475)
Q Consensus 79 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 145 (475)
.|......+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+.+..+.....
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 122355667778888888888888765310 122 2456666667777777777777777766431111
Q ss_pred --CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-
Q 038542 146 --SVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GV- 209 (475)
Q Consensus 146 --~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~- 209 (475)
...+++.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 123556666667777777777666665431 11 135555666666666666666666665541 22
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIPKIEHYGCMVDMLCRSGR---VKEAHEFIQKMPIEAN-PI 282 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~ 282 (475)
+....++..+...+...|++++|...++...+.. +.+.....+..+...|...|+ +++|..++++.+..|+ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 2223455566666666666666666665554321 111111223344444555555 5555555555533221 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
.+..+...|...|++++|...++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555555555444
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=1.3e-11 Score=118.26 Aligned_cols=284 Identities=9% Similarity=-0.013 Sum_probs=201.1
Q ss_pred HhCCCCHHHHHHHHhccCC--------CChhHHHHHHHH--HHHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 038542 56 GSCEGGIELGRKVFDEMSE--------RDSVSWSAMIGG--YARLGLSTDAI-----------DLFRQMQISGVCPDEIT 114 (475)
Q Consensus 56 ~~~gg~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 114 (475)
.+.+ ++++|..+++++.+ ++...|..++.. ..-.+..+.+. +.++.+.... ++...
T Consensus 23 i~~~-~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 23 IRRF-SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHc-CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4556 99999998877642 234444444432 11223334444 6666665421 11121
Q ss_pred HH------HHHHHHhccCChHHHHHHHHHHHHc----CCCC-CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-
Q 038542 115 MV------TVLSACTDLGALEVGKWVESFIEKQ----MVNR-SVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT- 177 (475)
Q Consensus 115 ~~------~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~- 177 (475)
+. .....+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 21 2445578899999999999999864 1111 345788899999999999999998887542 12
Q ss_pred ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CC
Q 038542 178 ----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GI 245 (475)
Q Consensus 178 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~ 245 (475)
..+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 35788899999999999999999999875311 122 2478889999999999999999999887621 23
Q ss_pred -CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 038542 246 -IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH 314 (475)
Q Consensus 246 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~ 314 (475)
+....++..+...|.+.|++++|...+++. +.......+..+...+...|+ +++|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 334567888999999999999999999887 111122335667778888888 77777777765 222444
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...+..++..|...|++++|.+.+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55788999999999999999999998865
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=121.28 Aligned_cols=166 Identities=13% Similarity=0.049 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------M 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 142 (475)
+..+|..+...|...|++++|+.+|+++... ..+.....+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999988762 11223456667777788888888888888877654 1
Q ss_pred C-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 038542 143 V-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-------R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--- 207 (475)
Q Consensus 143 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 207 (475)
. +....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+..|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22344566677777777777777777665431 1 1234555556666666666666666665543
Q ss_pred ---CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 208 ---GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 208 ---g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
+..|+ ..++..+...+...|++++|..+++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555566666666666666655553
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=121.01 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=158.3
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--------R---DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------ 106 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 106 (475)
+..++..+...|...| ++++|..+|++..+ . ...+|..+...|...|++++|+..+++....
T Consensus 26 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888899988 99999999988754 1 3557888999999999999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 038542 107 GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQ------MV-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-- 176 (475)
Q Consensus 107 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 176 (475)
+-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2223 3457777888899999999999999988864 22 223456788889999999999999988876421
Q ss_pred ---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 177 ---------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 177 ---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
...+|..+...|...|++++|...|+++.+.. |+. .+..+- ........
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~---------------- 242 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM---------------- 242 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------
Confidence 23578888899999999999999999987641 110 000000 00000000
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
....+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|.+.++++++..|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 01112222223333444444555555442 222 345667777777777777777777777766544
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=7.2e-10 Score=105.50 Aligned_cols=263 Identities=15% Similarity=0.011 Sum_probs=171.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-C----ccHHH
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNR-S----VGLCN 151 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 151 (475)
......+...|++++|...+++........+.. ++..+...+...|+++.|...+.+..+..... + ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455666777888887777776643222222 34444555667788888877777766432111 1 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMNG----------R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP--P--DDVAF 216 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~ 216 (475)
.+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 667778888888888887776531 1 1235566777788888888888888887664221 1 23567
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-----CMVDMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWR 285 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~ 285 (475)
..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7777888888999999998888765311111111121 2334477889999999999887 22221 33566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-----C-CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPM-----H-ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...+...|++++|...++++.+..+. . ...+..+..+|...|++++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888999999999999887654321 1 13566778889999999999998888765
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.7e-11 Score=125.81 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+. -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777778888888888888888877753 334667778888888888888888888887752 2234677888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|++.++++++++|++..++..|+.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888877 4455 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 038542 336 KIREVMDK 343 (475)
Q Consensus 336 ~~~~~m~~ 343 (475)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=7.5e-11 Score=115.40 Aligned_cols=311 Identities=14% Similarity=0.043 Sum_probs=207.2
Q ss_pred HHHHHcCCCc---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC----CCHHHHHHHHhccCCC-ChhHHHHHHHHHH
Q 038542 17 LKACAGIGDL---NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE----GGIELGRKVFDEMSER-DSVSWSAMIGGYA 88 (475)
Q Consensus 17 l~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----g~~~~A~~~f~~~~~~-~~~~~~~li~~~~ 88 (475)
-..+...|+. ++|...+....+. +...+..|..++...+ ++.++|...|++..++ +...+..|...|.
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 117 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYL 117 (452)
T ss_dssp C--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344556666 8999999888854 4455666666444433 2678999999887654 5668888999998
Q ss_pred HcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---C
Q 038542 89 RLGLST---DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---D 162 (475)
Q Consensus 89 ~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~ 162 (475)
..+... ++.+.+......| +......+...+...+.++.+......+.+.-...++..+..|..+|.+.| +
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~ 194 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQ 194 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Confidence 876644 4555555555544 334455566666666644444333333332223334558889999999999 9
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hcCCCHHHH
Q 038542 163 VDKALKLFRSMNGR---TIVSWTSVIAGLAMH----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-C--SHCGLVDKG 232 (475)
Q Consensus 163 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a 232 (475)
.++|...|++..+. +...+..+...|... ++.++|+..|++.. .| +...+..|... + ...++.++|
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999987532 444446677777554 68999999999987 43 44455555555 3 568999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-----RVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESI 303 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~ 303 (475)
..+|+...+. | +...+..|..+|. .| ++++|.+.|++.- ..++..+..|...|.. ..++++|...
T Consensus 271 ~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 271 MKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 9999998874 5 6677788888887 55 9999999999998 6688888888877776 3499999999
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 346 (475)
+++..+.+ ++.....|..+|.. ..+.++|...++...+.|.
T Consensus 345 ~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 345 LLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998866 45678889999875 4589999999999888774
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=4.1e-11 Score=101.33 Aligned_cols=160 Identities=14% Similarity=0.023 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
.+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4445555666666666666666665432 34455555555555555555555555555432 2234444444444555
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
.|++++|..+++.+.+. . +.+...|..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555555555444431 1 1244555555666666666666666666
Q ss_pred HHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++.+..|.++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665544
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.7e-10 Score=106.86 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 038542 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFA-------KCGDV-------DKALKLFRSMNG---R-TIVSWTSVIAGLAM 190 (475)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 190 (475)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888763 457778888888776 35885 899999998654 2 56789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH-HcCCHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPD-DV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC-RSGRVKE 267 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 267 (475)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 7888999999999999999999999863 2344555554444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC-CCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGN---EPM-HESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
|..+|++. ...| +...|..++..+...|++++|..+|+++++. .|. ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 2223 6889999999999999999999999999986 343 5567888999999999999999999998
Q ss_pred HhCC
Q 038542 342 DKRG 345 (475)
Q Consensus 342 ~~~~ 345 (475)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.5e-10 Score=97.78 Aligned_cols=159 Identities=16% Similarity=0.033 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGL 188 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 188 (475)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999887653 3467788899999999999999999999865 34678899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 456777888888888889999998888887763 1 22334444444444444444444
Q ss_pred HHHHHh
Q 038542 269 HEFIQK 274 (475)
Q Consensus 269 ~~~~~~ 274 (475)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=5e-11 Score=117.38 Aligned_cols=209 Identities=9% Similarity=-0.112 Sum_probs=178.5
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 61 GIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 61 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
.++.+...+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+...+...|++++|...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57777777766543 3778999999999999999 99999999998753 3357788899999999999999999999
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhc---------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc--------CChHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKC---------GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMH--------GRGLE 196 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~--------g~~~~ 196 (475)
.+++.. |+...+..+...|... |++++|...|++.. ..+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998864 5578888999999999 99999999999865 34678999999999988 99999
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 197 AVALFEEMLEAGVP---PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 197 A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
|+..|++..+.. + -+...+..+..+|...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999863 2 37889999999999999999999999998873 23456778899999999999999999888
Q ss_pred hC
Q 038542 274 KM 275 (475)
Q Consensus 274 ~m 275 (475)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 77
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=9.4e-11 Score=111.97 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIPKIEH 251 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~ 251 (475)
+++.+...|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...++....-. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444445555555555555555544331 1000 11234445555555555555555555544310 11112344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM----PI--EA-NPIIWRTLISACCARGE---LKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m----~~--~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+..+...|.+.|++++|...+++. .. .| ....+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 455555555555555555555544 10 11 12233333334444455 44444444431 1112223345556
Q ss_pred HHHHHhccChhHHHHHHHHHH
Q 038542 322 SHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666665553
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.2e-09 Score=104.33 Aligned_cols=304 Identities=11% Similarity=0.019 Sum_probs=211.8
Q ss_pred CCCCcchHHHHHHHH--HcCCCcHHHHHHHHHHHHhc--CCCC--hhHHHHHHHHH----H-hCCCCHH---------HH
Q 038542 6 VSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQ--FGDD--IHVQNTLVHMY----G-SCEGGIE---------LG 65 (475)
Q Consensus 6 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~~----~-~~gg~~~---------~A 65 (475)
+.|+...-+.+-.-+ ...+++++|..+.+.+.+.. +..| ...|-.|+..- . ... ... .+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~-~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLE-PGKTYGNRPTVTEL 84 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCC-C--------CHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcC-cccccccccchHHH
Confidence 345555445555555 67899999999999987642 2223 33334444321 1 111 122 33
Q ss_pred HHHHhccCCC--Ch---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHH
Q 038542 66 RKVFDEMSER--DS---VSWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 66 ~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
.+-.+....+ +. ..|......+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3333332222 11 1234455667889999999999999876411 123 346777888899999999999999
Q ss_pred HHHHHcCCC------CCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHH
Q 038542 136 SFIEKQMVN------RSVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVAL 200 (475)
Q Consensus 136 ~~~~~~~~~------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l 200 (475)
....+.... ....+++.+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 988754211 1245677899999999999999999987642 12 25788889999999999999999
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHHcCC---HHHHHH
Q 038542 201 FEEMLEA----GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI---IPKIEHYGCMVDMLCRSGR---VKEAHE 270 (475)
Q Consensus 201 ~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~ 270 (475)
|++..+. +.+....++..+...+.+.|++++|..+++...+...- +.....+..+...|...|+ +.+|..
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9998761 22334678888999999999999999999998764222 2223455666667777888 899999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 271 FIQKMPIEAN-PIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 271 ~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
.+++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999755443 346677888999999999999999987653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=2.2e-10 Score=100.91 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIA 186 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 186 (475)
.|+..+......+...|++++|...+...++...+++...+..+..+|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999886546777777799999999999999999988753 35578888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDD-------VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK---IEHYGCMV 256 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 256 (475)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+...+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 3334 4577778888899999999999998875 3454 56777777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+|...|+. .++++ .+ ..+...|.... ....+.+++|...++++.+..|.++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 22332 11 12344444433 3345678999999999999999987766666544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=2.8e-10 Score=100.20 Aligned_cols=189 Identities=8% Similarity=-0.049 Sum_probs=116.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN---G-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
++..+..+...|.+.|++++|...|++.. . ++...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 44566667777777777777777777653 2 455566667777777777777777777777642 223456666777
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISA 290 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~ 290 (475)
++...|++++|...++...+. .+.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 777777777777777776653 12223 34566666666777777777777665 44554 3455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.. .+...++++....+.+...|..+ .....+.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 533 33444555555555444333332 233445668888888877653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=4.1e-09 Score=100.24 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC--C-C
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPDE----ITMVTVLSACTDLGALEVGKWVESFIEKQ----MVN--R-S 146 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 146 (475)
+++.+...+...|++++|.+.+++...... .++. .++..+...+...|++++|...++...+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 344455555556666666666655543110 0111 12334444555666666666666655532 111 1 1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMNG----R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DVAF 216 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~ 216 (475)
...+..+...|...|++++|...+++... . ...+|..+...+...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 23445566666777777777776665321 0 124566666777777888888888777654311111 1111
Q ss_pred H----HHHHHHhcCCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-
Q 038542 217 V----GLLSACSHCGLVDKGREYFDSMKNDFGIIP---KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANP- 281 (475)
Q Consensus 217 ~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~- 281 (475)
. ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|...+++. +..++.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 2233466788888888888777642 2111 1224556677788888888888887765 211122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
..+..+..++...|+.++|...+++.....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 255666777888888888888888877554
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=1.4e-10 Score=105.27 Aligned_cols=118 Identities=13% Similarity=0.031 Sum_probs=56.3
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCCccHHHHHH
Q 038542 89 RLGLSTDAIDLFRQMQIS-------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------MV-NRSVGLCNALI 154 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 154 (475)
..|++++|+.+|++..+. ..+....++..+...+...|++++|...+..+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555555431 11112344555555566666666666666655543 11 11233455555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNG-------R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544321 0 123344444444444555555444444433
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=5.9e-10 Score=102.35 Aligned_cols=185 Identities=10% Similarity=0.011 Sum_probs=114.3
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG-------R--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~ 221 (475)
.|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555544321 1 1245666666666777777777666665442 1100 1346777778
Q ss_pred HHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 038542 222 ACSHC-GLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NP-----IIWRTL 287 (475)
Q Consensus 222 ~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~l 287 (475)
.|... |++++|...|++..+-..-..+ ..++..+...|.+.|++++|...|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888877653111111 346777888888999999999888876 2222 21 156777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCch-----HHHHHHHHH--hccChhHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESN-----YVLLSHIYA--KLLRWEKKTKIREV 340 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~ 340 (475)
..++...|+++.|...+++.++..|..... +..++..|. ..+++++|.+.++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 888888999999999999999988865443 334555554 44667777776644
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=2e-09 Score=110.61 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+.+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+++.++.. +.+..+|..|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666666666666666666666666653 33 34556666666666666666666666666653 224556666666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
+|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666543 2345666666666777777777777777666642 22355666666667777776666
Q ss_pred HHHHHHhh
Q 038542 233 REYFDSMK 240 (475)
Q Consensus 233 ~~~~~~m~ 240 (475)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1.5e-09 Score=99.56 Aligned_cols=244 Identities=10% Similarity=-0.070 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhC-CCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 27 NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 27 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+|.+++.+..+.- +++...+ .+ +... ++++++|...|++. ...|...|++++|++.|.+...
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---FSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---HSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---cCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 35677777777762 3322222 22 2211 21488888777653 7788888999999988887754
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 038542 106 S----GVCPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180 (475)
Q Consensus 106 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 180 (475)
. |-+++ ..+|..+..++...|++++|...++..++.. ...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 3466666667777777777777766665421 112222211 123
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-Ch----
Q 038542 181 WTSVIAGLAMH-GRGLEAVALFEEMLEAGVP-PD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KI---- 249 (475)
Q Consensus 181 ~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~---- 249 (475)
|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|+...+. .... ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 198 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHH
Confidence 45555666664 6666666666665542100 01 234566666777777777777777766652 2111 11
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCC
Q 038542 250 -EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP------IIWRTLISACC--ARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 250 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~p~ 313 (475)
..|..+..++...|++++|...|++. .+.|+. ..+..++.++. ..+++++|...++++...+|.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14555666677777777777777766 333321 12334444543 345577777777666666554
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=1.4e-08 Score=91.34 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=134.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-T---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD-DVAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 217 (475)
+...+-.+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666777777777777777777653 2 2 45666677777777777777777777776421 112 34455
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038542 218 GLLSACSH--------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289 (475)
Q Consensus 218 ~ll~~~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 289 (475)
.+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 56666666 777777777777776531 11222222211111110000 112466788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHhc----------cChhHHHHHHHHHHhCCCccCCCccEEE
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHE---SNYVLLSHIYAKL----------LRWEKKTKIREVMDKRGMKKIPGSTLIE 356 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 356 (475)
.+...|++++|...++++++..|.++ ..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 89999999999999999999988754 4788889999877 89999999999887642
Q ss_pred ECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 038542 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 390 (475)
..++...++...+.++...+.+
T Consensus 226 ------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2356667777777776666544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=2.7e-09 Score=96.65 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQM------ 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 142 (475)
...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+.+..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3567888889999999999999999888754 2223 34567778888889999999999988887641
Q ss_pred -CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 143 -VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------TIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 143 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+....++..+...|...|++++|...|++..+. ...++..+...|...|++++|...|++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1224567778888899999999998888765321 123444455555555555555555555443
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1.9e-07 Score=94.87 Aligned_cols=335 Identities=9% Similarity=-0.025 Sum_probs=223.6
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCC---HHHHHHHHhccCC-----CChhH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEMSE-----RDSVS 79 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~---~~~A~~~f~~~~~-----~~~~~ 79 (475)
-|..+|..++..+.+.+.++.+..+++.++.. ++.....|..-+..-.+.+ + ++.+..+|++... |++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~-~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKM-EELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 46778999999999999999999999999987 5778888999999988888 8 9999999999764 68888
Q ss_pred HHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 038542 80 WSAMIGGYARLGLS--------TDAIDLFRQMQI-SGV-CPD-EITMVTVLSACT---------DLGALEVGKWVESFIE 139 (475)
Q Consensus 80 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 139 (475)
|...+....+.++. +...++|+.... .|. .|+ ...|...+.... ..+.++.+..+|..++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888776665553 234477776554 466 554 445555554432 2334667778887776
Q ss_pred HcCCCCCccHHHHHH---HHH----------HhcCCHHHHHHHHH-----------------------------------
Q 038542 140 KQMVNRSVGLCNALI---DMF----------AKCGDVDKALKLFR----------------------------------- 171 (475)
Q Consensus 140 ~~~~~~~~~~~~~li---~~y----------~~~g~~~~A~~~~~----------------------------------- 171 (475)
......-..+|.... ..+ -...+++.|...+.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 431111111221111 000 00011222222222
Q ss_pred --------------------------------hcC---CCChhHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHH
Q 038542 172 --------------------------------SMN---GRTIVSWTSVIAGLAMHGRGLEAV-ALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 172 --------------------------------~~~---~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 215 (475)
+.. ..+...|-..+.-+...|+.++|. ++|++.... ++.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 111 012234444455556678888886 999988875 4556666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcC--------CCCC------------hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFG--------IIPK------------IEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+...+......|+++.|..+|+.+..... -.|+ ...|...+....+.|.++.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67778888889999999999998886310 0132 346788888888899999999999887
Q ss_pred -CC--CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 276 -PI--EANPIIWRTLISACCAR-GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 276 -~~--~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.. .+...+|...+..-... ++.+.|..+|+.+++..|.++..+...+......|+.+.|..+|++.....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 21 11233443333323333 458999999999999888888888888888888999999999999887654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=6e-09 Score=82.56 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4445555555555555555555555432 233444455555555555555555555555432 1222333334444444
Q ss_pred HcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 261 RSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 444444444444333 111 123334444444444444444444444444433
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=5.5e-08 Score=88.06 Aligned_cols=235 Identities=13% Similarity=0.074 Sum_probs=135.0
Q ss_pred CCCCHHHHHHHHhccCCCC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 58 CEGGIELGRKVFDEMSERD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 58 ~gg~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
.| .+..+..-...+...+ ...-.-+.++|...|++... ..-.|....+..+... ...+ +...++
T Consensus 26 ~G-~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 26 TG-NFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TT-CHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred hh-HHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 45 7777777555554322 22233345777777776642 1123343333333332 2222 455555
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
...+.+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 555444 33444455667777777888888777777632 23456666777777778888888888777663 45
Q ss_pred -----CHHHHHHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----
Q 038542 212 -----DDVAFVGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI---- 277 (475)
Q Consensus 212 -----~~~t~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---- 277 (475)
+..+...|..++. ..++.++|..+|+++... .|+..+...++.++.+.|++++|.+.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3455555555522 233777777777777643 343223333444677777777777777654 11
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 278 ------EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 278 ------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.| |+.+...+|......|+ .|.++++++.+..|+++
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 13 45555455555555565 66777777777777664
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.5e-08 Score=91.81 Aligned_cols=240 Identities=8% Similarity=0.019 Sum_probs=150.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
++-..-.|++..++.-..++.. ........-+.+++...|++... ..-.|.......+ ..|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~l-a~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLY-VQFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHH-HHHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHH-HHHhccc--
Confidence 4445567888887773332221 11223333455667666665531 1112222233332 3333322
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 164 DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 164 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776553 34555567777888888888888888887665431 24556777788888888888888888888
Q ss_pred hhhcCCCC-----ChhHHHHHHHHH--HHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 240 KNDFGIIP-----KIEHYGCMVDML--CRSG--RVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 240 ~~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.+. .| +..+...|..++ ...| ++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 45 245555555552 2233 788888888888 3345533334444577888888888888887766
Q ss_pred C----------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 310 N----------EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 310 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
. +|.++.++..++..+...|+ +|.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4 47777777777777777776 7788888887643
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=4.5e-09 Score=94.59 Aligned_cols=202 Identities=9% Similarity=-0.040 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNG--R----TIVS 180 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 180 (475)
.+...+-.....+.+.|++++|...+..+++.... + ..++..+..+|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667777788889999999999999999987432 3 56778889999999999999999998753 2 1356
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 038542 181 WTSVIAGLAM--------HGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
+..+..++.. .|++++|+..|++..+.. |+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 999999999999998853 442 222111 111111111 1123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCc
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCAR----------GELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
+..+...|.+.|++++|...|+++ |-.+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888889999998888877 2222 245677777777766 8999999999999999998854
Q ss_pred ---hHHHHHHHHHhccChhH
Q 038542 317 ---NYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 317 ---~~~~l~~~~~~~g~~~~ 333 (475)
+...+..++...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=6.3e-09 Score=82.45 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. +.+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788899999999999999999873 2446778888999999999999999999987 22 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|.+.++++.+..|.+...+..++.+|...|++++|...++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999988889999999999999999999999988764
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1.3e-09 Score=112.27 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=118.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 158 AKCGDVDKALKLFRSMN-----------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56777777777777664 2355677777777777788888888887777653 33556777777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887777752 22345667777777777788777 7777766 3334 5667777777788888888888888
Q ss_pred HHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 305 KRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 305 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
+++.+.+|.+..++..+..+|...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88877777777777777777755444
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=1.2e-08 Score=93.25 Aligned_cols=176 Identities=9% Similarity=-0.037 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3445555555555556677778888899999999999999998863 446678888999999999999999999988753
Q ss_pred cCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--Cch
Q 038542 243 FGIIPKIEHYGCM-VDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH--ESN 317 (475)
Q Consensus 243 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 317 (475)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4554433322 33366777888888888776 3344 68899999999999999999999999999999987 778
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=4.8e-08 Score=85.68 Aligned_cols=179 Identities=8% Similarity=0.032 Sum_probs=115.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG--RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD----VAFV 217 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 217 (475)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3455566777888888888888887652 22 2456667778888888888888888887753 322 1333
Q ss_pred HHHHHHhc------------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 218 GLLSACSH------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 218 ~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
.+..++.. .|+.++|...|+.+.+. .+-+...+.+...... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH----------
Confidence 34444432 35566666666666542 1111222211111000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE---SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
......+...+...|+++.|...++++++..|.++ .++..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456678899999999999999999998875 468889999999999999999999888765
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=4.4e-10 Score=92.00 Aligned_cols=137 Identities=9% Similarity=-0.019 Sum_probs=87.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
..|++++|+..++..... .|+ ...+..+...|.+.|++++|...|+...+. -+-+...|..+..+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 345555555555554332 222 234445556666666666666666666542 223455666666666666677776
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 269 HEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESI-TKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 269 ~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
...|++. .+.| +...|..+...+...|++++|.+. ++++++++|.++.+|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666665 3344 567788888888888888766554 588888889888888888888777764
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=3.6e-08 Score=101.42 Aligned_cols=189 Identities=14% Similarity=0.051 Sum_probs=149.9
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 038542 123 TDLGALEVGKWVESFIE--------KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMH 191 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 191 (475)
...|++++|...++... +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 43 244677888899999999999999999998763 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|+...+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 3456788889999999999999 9999998863 234667899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCc
Q 038542 272 IQKM-PIEAN-PIIWRTLISACCARGE-----LKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 272 ~~~m-~~~p~-~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 316 (475)
|++. ...|+ ...|..+..++...++ .+...++.+.+....+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 66775 5677778888766555 34444555555555544444
No 99
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.92 E-value=9.1e-07 Score=89.89 Aligned_cols=213 Identities=8% Similarity=-0.022 Sum_probs=160.2
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL-KLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
...+|++.+.. ++.+..+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567766665 3446667777788888889988896 88887642 3566788888888899999999999999886
Q ss_pred cC---------CCCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-C
Q 038542 207 AG---------VPPD------------DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-R 264 (475)
Q Consensus 207 ~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~ 264 (475)
.. -.|+ ...|...+....+.|..+.|..+|....+. -..+....|...+..-.+.+ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 41 0132 235777777777889999999999999873 12223445554444444554 4
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCchHHHHHHHHHhccChhHHHHHHH
Q 038542 265 VKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM---HESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 265 ~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.+.|.++|+.. ....+...|...+.-....|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999987 22336778888888888899999999999999998873 34567888888889999999999999
Q ss_pred HHHhCC
Q 038542 340 VMDKRG 345 (475)
Q Consensus 340 ~m~~~~ 345 (475)
++.+.-
T Consensus 566 R~~~~~ 571 (679)
T 4e6h_A 566 RFFEKF 571 (679)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 998754
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.9e-08 Score=84.48 Aligned_cols=76 Identities=8% Similarity=-0.129 Sum_probs=60.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...+++. ...| +...+..+...+...|++++|...++++++.+|.. ...+..+..+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555544 2344 57888889999999999999999999999998765 45888999999999999999988877643
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=1.6e-08 Score=101.92 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998764 356889999999999999999999999998864 445788999999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR---GELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 311 (475)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999873 3445788999999999999999999999987 3344 678899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 038542 312 PMHESNYVLLS 322 (475)
Q Consensus 312 p~~~~~~~~l~ 322 (475)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887765
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=3e-08 Score=99.99 Aligned_cols=147 Identities=10% Similarity=-0.057 Sum_probs=111.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999888763 33677889999999999999999999998754 35688999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---GRVKEAHEFIQKM 275 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 275 (475)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998864 446778899999999999999999999998873 234567888999999999 9999999999887
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=6.1e-08 Score=89.47 Aligned_cols=219 Identities=14% Similarity=0.018 Sum_probs=155.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 038542 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 169 (475)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888876531 111 0 11146777777776654 4567888999999888
Q ss_pred HHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCCHHHHHHH
Q 038542 170 FRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG---VPPD--DVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 170 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876542 12 3578888899999999999999999876531 1122 3577888888988 999999999
Q ss_pred HHHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 038542 236 FDSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI---EAN----PIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 236 ~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
|++...-+.-.. ...++..+...|.+.|++++|...|++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998775321111 1467888899999999999999999887 11 112 23566777778888999999999
Q ss_pred HHHHHhCCCCCCch-----HHHHHHHHHhccChhHHHH
Q 038542 304 TKRLIGNEPMHESN-----YVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 304 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 336 (475)
+++.+ ..|..... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865433 33445555 5677665555
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=6e-09 Score=85.13 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=101.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455667889999998887764 233 3456677899999999999999999988 4555 7889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHH-HHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI-REVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 343 (475)
++++|...++++++.+|.++.++..+..+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466554
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=2.1e-07 Score=80.71 Aligned_cols=160 Identities=11% Similarity=-0.055 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG----LVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
+..++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|+...+. | +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 55555566666666666666666666666654 44455555555655 5 677777777776552 2 45556
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 253 GCMVDMLCR----SGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 253 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .+++++|...+++..+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 66777777777776 33332 6677777777777 77888888888888877 445667888
Q ss_pred HHHHHHhc-c-----ChhHHHHHHHHHHhCC
Q 038542 321 LSHIYAKL-L-----RWEKKTKIREVMDKRG 345 (475)
Q Consensus 321 l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 345 (475)
|..+|... | ++++|.+.++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88888754 3 7888888888877766
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=7.7e-08 Score=83.25 Aligned_cols=128 Identities=8% Similarity=-0.002 Sum_probs=92.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 183 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+...+. -+.+...+..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 37778888899999999998888763 445678888888888899999999999888863 234567777787777655
Q ss_pred CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 263 GR--VKEAHEFIQKMPIEANP--IIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 263 g~--~~~A~~~~~~m~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
|. .+.+...++... .|+. ..|..+..++...|++++|...|+++++..|.+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 43 345566666652 3333 344455666777889999999999999998863
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.9e-07 Score=80.79 Aligned_cols=186 Identities=14% Similarity=0.022 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
..+-.....+...|++++|+..|++.... .|+.. .+.. .. ..... .......+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~~---~~~~~---------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-TN---VDKNS---------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-HH---SCTTS---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-hh---hcchh---------------hhhHHHHHHHHHH
Confidence 33444556667777778887777777663 34322 2211 00 00000 0011223346666
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH--HH
Q 038542 157 FAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV--DK 231 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~--~~ 231 (475)
|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|.. +.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 666777777777666553 2355666666677777777777777777766643 33455666666665444332 23
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 143 ~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 143 LETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333333322 11222223333444555667777777777765 5566655444433
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.7e-07 Score=79.18 Aligned_cols=158 Identities=10% Similarity=-0.023 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCCccHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG----ALEVGKWVESFIEKQMVNRSVGLCN 151 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (475)
++.++..|...|...+++++|++.|++..+.| +...+..+...+.. + ++++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56666667777777777777777777776654 44555555555555 5 6777777777776654 445666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 152 ALIDMFAK----CGDVDKALKLFRSMNGRT-----IVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 152 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
.|..+|.. .+++++|...|++..+.+ ..++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666666 667777777777766443 4666777777776 66777777777777665 223334555
Q ss_pred HHHHHhcC-C-----CHHHHHHHHHHhhhh
Q 038542 219 LLSACSHC-G-----LVDKGREYFDSMKND 242 (475)
Q Consensus 219 ll~~~~~~-g-----~~~~a~~~~~~m~~~ 242 (475)
|...|... | +.++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555432 2 677777777777663
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=3.1e-07 Score=83.82 Aligned_cols=163 Identities=7% Similarity=-0.036 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHHH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWT-SVIA 186 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~ 186 (475)
.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344566667777888899999999999888774 33667788888899999999999999988864 3333222 2233
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
.+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 4667777888888888887763 456677888888888888999998888888874111122567777888888888877
Q ss_pred HHHHHHHh
Q 038542 267 EAHEFIQK 274 (475)
Q Consensus 267 ~A~~~~~~ 274 (475)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77776654
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=7.2e-06 Score=74.81 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=166.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCccHHHHHHHHH----Hhc--
Q 038542 90 LGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLG--ALEVGKWVESFIEKQMVNRSVGLCNALIDMF----AKC-- 160 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 160 (475)
....++|++++.++... .|+ ...|+.--..+...+ +++++...++.++....+ +..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 34446899999888874 454 445666666677777 889999999888887533 555666554444 455
Q ss_pred -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC------
Q 038542 161 -GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL------ 228 (475)
Q Consensus 161 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 228 (475)
+++++++++++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78889999888875 347788888877888888888 9999999998875 4466667666666666666
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE-AHEFIQKM-PI----EANPIIWRTLISACCARGELKLAES 302 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~~~~~~g~~~~a~~ 302 (475)
++++++.++.+.. -.+-|...|+-+-..+.+.|+..+ +..+..+. .. ..++..+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8888888888876 344567788888888888887444 55566665 21 2377888888899999999999999
Q ss_pred HHHHHHh-CCCCCCchHHHHH
Q 038542 303 ITKRLIG-NEPMHESNYVLLS 322 (475)
Q Consensus 303 ~~~~~~~-~~p~~~~~~~~l~ 322 (475)
+++.+.+ .+|.....|...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 9999886 6887766665443
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=4.4e-07 Score=78.44 Aligned_cols=145 Identities=11% Similarity=-0.086 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456677777888888888887777777777777777888888888888887777653 34566677777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
++|...|+...+. . +.+.... +...| +...| ....|..+..++...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~-~-~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ-L-RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT-T-TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-C-CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777776652 1 1111000 00000 01223 34677788888888899999999999988
Q ss_pred hCCCCC
Q 038542 309 GNEPMH 314 (475)
Q Consensus 309 ~~~p~~ 314 (475)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888865
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=2.1e-07 Score=81.60 Aligned_cols=185 Identities=9% Similarity=-0.070 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TI---VSWT 182 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 182 (475)
+...+-.+...+...|++++|...++.+++...... ...+..+..+|.+.|++++|...|+++.+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555667778999999999999999998643221 34677889999999999999999998753 2 22 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 183 SVIAGLAM------------------HGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 183 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999885 35432 2211111 001111111
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235677889999999999999987 33343 256888999999999999999999999998887654
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=4.5e-08 Score=79.74 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 244 GIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 244 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3344 3456777888889999999999999888 4445 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+..+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988643
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=3.3e-07 Score=79.22 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34456667777888888888887653 457778888888888888888888888776 2233 6788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC----------------chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 293 ARGELKLAESITKRLIGNEPMHE----------------SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..|++++|...++++.+..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999888777 789999999999999999999999988653
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=1.4e-07 Score=79.12 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-CSH 225 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~ 225 (475)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44555666777777777777776653 245667777777777777777777777665532 333322221111 111
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a~ 301 (475)
.+...+|...++...+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 12222356666666542 2224566777777777777777777777766 44443 456777777777778777777
Q ss_pred HHHHHHH
Q 038542 302 SITKRLI 308 (475)
Q Consensus 302 ~~~~~~~ 308 (475)
..+++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=4.3e-08 Score=79.74 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456777788888999999999999887 3344 7888999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888753
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=2.3e-06 Score=78.17 Aligned_cols=160 Identities=8% Similarity=-0.088 Sum_probs=113.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAG-VPPDD----VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGC 254 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 254 (475)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|...++.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877642 12221 12334666677777888888888887762111222 235788
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-----C--CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCchHH
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-----P--IE-A-NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HESNYV 319 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-----~--~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 319 (475)
+...|...|++++|...|+++ . .. + ...+|..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887776 1 11 1 2347888999999999999999999998765422 145788
Q ss_pred HHHHHHHhccC-hhHHHHHHHHHHh
Q 038542 320 LLSHIYAKLLR-WEKKTKIREVMDK 343 (475)
Q Consensus 320 ~l~~~~~~~g~-~~~a~~~~~~m~~ 343 (475)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999988877653
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.6e-07 Score=74.01 Aligned_cols=107 Identities=8% Similarity=-0.055 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455556666666666666666666542 2334556666666666666666666666665 2333 5667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
..|++++|.+.|+++++++|.+..++..|.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777777777777666655544
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=5.3e-07 Score=82.47 Aligned_cols=163 Identities=9% Similarity=-0.071 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCC--hh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-----VAFVGLLSACSHCGLVDKGREYFDSMKNDFG--IIPK--IE 250 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 250 (475)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888888888888877764322111 2234455667788899999988887764211 1111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HE 315 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 315 (475)
.|+.+...|...|++++|...|++. +..+ ...+|..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999998888776 2111 1257888999999999999999999998765321 14
Q ss_pred chHHHHHHHHHhccChhHH-HHHHHHHH
Q 038542 316 SNYVLLSHIYAKLLRWEKK-TKIREVMD 342 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 342 (475)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77676654
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=3.9e-07 Score=75.05 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666666666666666666542 2234556666666777777777777777665 2223 5677888888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHH--HHHHhccChhHHHHHHHHHHh
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLS--HIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..|++++|...++++.+..|.+...+..+. ..+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999888877774444 447788999999998877643
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=3.6e-06 Score=76.85 Aligned_cols=213 Identities=10% Similarity=0.142 Sum_probs=166.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----HHc---CCh
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG--DVDKALKLFRSMNG---RTIVSWTSVIAGL----AMH---GRG 194 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 194 (475)
.-++|....+.++.... .+..+|+.--......| +++++++.++.+.. ++..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34688999999988753 35667888888888888 99999999998763 4567787655555 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC------HH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR------VK 266 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~ 266 (475)
++++++++++.+.. +-|...|..-.-.+.+.|.++ +++++++.+.+. -+-|...|+.-..++.+.|. ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999874 456777777777777788887 999999999974 33455667666666777776 88
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC---CCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL-AESITKRLIGNE---PMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++++.++++ ...| |...|+-+...+...|+... ...+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998877 3344 88899999888888887444 556777776655 77888899999999999999999999999
Q ss_pred HHh
Q 038542 341 MDK 343 (475)
Q Consensus 341 m~~ 343 (475)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=8e-06 Score=74.52 Aligned_cols=203 Identities=8% Similarity=-0.012 Sum_probs=124.5
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhH---HHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 038542 32 VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS---WSAMIGGYARLGLSTDAIDLFRQMQISGV 108 (475)
Q Consensus 32 ~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 108 (475)
.+..+.+-...|+..+...+...+.- .++ .+|..-...+... +...+..+...|++++|.+++++......
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~---~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQI---PII---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTC---CTH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCc---CHH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 34444443346777776666665533 222 2333333333333 33447788899999999999999887421
Q ss_pred -CCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-----cHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038542 109 -CPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-----GLCNALIDMFAKCGDVDKALKLFRSMNG--- 175 (475)
Q Consensus 109 -~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 175 (475)
.|+.. .+..+...+...+++++|...+..+.+.....+. .+++.+...|...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22221 2234555567777889999999888874333222 2577788888888888888887776541
Q ss_pred ---CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCC-HHHHHHHHHHhh
Q 038542 176 ---RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPPD-DVAFVGLLSACSHCGL-VDKGREYFDSMK 240 (475)
Q Consensus 176 ---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~m~ 240 (475)
.+ ..+|..+...|.+.|++++|+..+++..+. +..+. ..+|..+..++...|+ .++|...++...
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 235666777777777777777777766542 21222 4566666667777773 467766666554
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=3.7e-07 Score=70.93 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555556666666666666666666542 2234555666666666777777777666665 22 23567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888777777777665543
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=1.9e-07 Score=73.49 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=89.4
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 245 IIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 245 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.+..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 356777889999999999999999987 4445 788999999999999999999999999999999999999999
Q ss_pred HHHHHhccChhHHHHHHHHHHhC
Q 038542 322 SHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988763
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=4.3e-07 Score=71.20 Aligned_cols=118 Identities=9% Similarity=-0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666666677776666666552 2334556666667777777777777777665 2223 56778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChh
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 332 (475)
+...|++++|...++++.+..|.+...+..+..++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999998888888888888888888877753
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=9.3e-08 Score=87.00 Aligned_cols=187 Identities=11% Similarity=-0.033 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455555556666666666665543 2245556666666666666666666666665542 234455666666666
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHH---HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVD---MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a 300 (475)
..|++++|...|+...+. .|+. ..+...+. ...+...+.. .......++......+ ..+ ..|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 666666666666665542 1110 01111111 1111111111 1122223333333333 222 26888889
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhc-cChhHHHHHHHHHHhC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKL-LRWEKKTKIREVMDKR 344 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 344 (475)
.+.++++.+.+|.+......+...+.+. +.++++.++|....+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888887766666666666666 6788899998877653
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=4.4e-07 Score=71.59 Aligned_cols=115 Identities=7% Similarity=-0.050 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444455555555555555555555443 11223445555555555555555555555554 1222 566777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
...|++++|.+.++++.+..|.+...+..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888777777777777766553
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.2e-06 Score=80.10 Aligned_cols=128 Identities=10% Similarity=0.018 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-C---
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI------TMVTVLSACTDLGALEVGKWVESFIEKQMVNR-S--- 146 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--- 146 (475)
...+...+..+...|++++|++.+.+..+.... +.. .+..+...+...|++++|...+....+..... +
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345556677777888888888888777664221 111 12223333445556666666665555322111 1
Q ss_pred -ccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 147 -VGLCNALIDMFAKCGDVDKALKLFRSMN-----GRT-----IVSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 147 -~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
..+++.+...|...|++++|...|++.. .++ ..+|+.+...|...|++++|+..+++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 2244455555555555555555554432 011 1244444444555555555555554443
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=4.7e-07 Score=72.89 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888899999999999887 3344 7888899999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888753
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=2.8e-07 Score=85.05 Aligned_cols=197 Identities=10% Similarity=-0.029 Sum_probs=148.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
..|++++|..++++..+.... . .+...|+++.|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 457788999999888765221 1 011158899998888764 5678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 204 MLEA----GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 204 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
..+. +-.+. ..+|..+...|...|++++|...|+...+-+ |-.+ ...++..+...|.. |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888999999999999999998876532 1111 13577888888988 999999999988
Q ss_pred C-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------chHHHHHHHHHhccChhHHHHHHHH
Q 038542 275 M-PI---EA----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE------SNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 275 m-~~---~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
. .+ .. ...++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 11 146788899999999999999999999988654332 2566777888889999999999988
Q ss_pred HH
Q 038542 341 MD 342 (475)
Q Consensus 341 m~ 342 (475)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=4.5e-07 Score=84.75 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...|+++++..|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888877 3334 68889999999999999999999999999999999999999999999
Q ss_pred hccChhHH-HHHHHHHH
Q 038542 327 KLLRWEKK-TKIREVMD 342 (475)
Q Consensus 327 ~~g~~~~a-~~~~~~m~ 342 (475)
..|+++++ ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44566654
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=3.8e-05 Score=75.47 Aligned_cols=354 Identities=9% Similarity=-0.059 Sum_probs=206.7
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC------CCChhHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS------ERDSVSWSAMI 84 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~------~~~~~~~~~li 84 (475)
..|...+..+-. ++++.+.++|+..+.. .|+...|...+....+.+...+....+|+... ..+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 356666665544 8899999999998875 57888888888877776623444556665533 23667888888
Q ss_pred HHHH----HcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCC
Q 038542 85 GGYA----RLGLSTDAIDLFRQMQISGVCPD-EI-TMVTVLSACTDL--------------GALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 85 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~ 144 (475)
..+. .+++.+.+.++|++.... ++. .. .|..... +... +.+..|..++..+...-..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7654 346778899999999873 332 22 2222221 1111 1223344444444432111
Q ss_pred CCccHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 038542 145 RSVGLCNALIDMFAKCG--D-----VDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 214 (475)
.+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+..
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 13335555555432211 1 3345667777653 35677888888888899999999999999887 4433
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhc---C-----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CCHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDF---G-----IIP---KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE-ANPI 282 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~-----~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~ 282 (475)
.+.. +|......++. ++.+...+ . ..+ ....|...+..+.+.+.++.|..+|+++... .+..
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~ 320 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPH 320 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChH
Confidence 2221 12211111111 22222211 0 001 1245666777777888899999999988211 2344
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEE
Q 038542 283 IWRTLISACCA-RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361 (475)
Q Consensus 283 ~~~~li~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 361 (475)
+|......-.. .++.+.|..+|+.+++..|+++..+...++...+.|+.+.|..+++...+. ..-|..+
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~------~~lw~~~---- 390 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKT------SRMWDSM---- 390 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCB------HHHHHHH----
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHHHH----
Confidence 45432222222 346999999999999888887777777788888899999999999886210 0011110
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHHcC
Q 038542 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392 (475)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 392 (475)
+.=...||..+.+-..+++....++..+
T Consensus 391 ---~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 391 ---IEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp ---HHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 0001234555666666777666666443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.1e-06 Score=75.21 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=71.1
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHH
Q 038542 159 KCGDVDKALK---LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 159 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 230 (475)
..|++++|.+ .+..-+.....++..+...|...|++++|...+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322223455555666666666666666666665441 1111 2234555556666666666
Q ss_pred HHHHHHHHhhhhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 038542 231 KGREYFDSMKNDFGIIP-----KIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEAN----PIIWRTLISACCARGEL 297 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~ 297 (475)
+|...+++......-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1223444455555555555555555443 00011 12234444555555555
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=4.2e-05 Score=75.12 Aligned_cols=321 Identities=9% Similarity=-0.049 Sum_probs=194.9
Q ss_pred CCCcchHHHHHHHHHcCCC-cHHHHHHHHHHHHh-cC-CCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCC-C--C
Q 038542 7 SPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKF-QF-GDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSE-R--D 76 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~-~--~ 76 (475)
.|+...|..-+.-..+.++ .+....+|+.++.. |. ..+..+|...+..+.. .+ +++.+.++|++... | +
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCTT
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhChhhh
Confidence 4788888887776666553 45677888888775 53 3466788888876543 34 78899999998854 2 2
Q ss_pred h-hHHHHHHHHHHHc-------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHH
Q 038542 77 S-VSWSAMIGGYARL-------------GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL--GA-----LEVGKWVE 135 (475)
Q Consensus 77 ~-~~~~~li~~~~~~-------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~ 135 (475)
. ..|......-... +.+..|..++.++...--..+...|...+..-... +- .+.+..++
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1 2344333221111 12233444444444210001223444444432221 11 34567788
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG----- 208 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 208 (475)
+.++... +.+..+|...+..+.+.|+.++|..+|++... | +...|. .|+.....++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 8888764 45677888888889999999999999986532 2 333333 23332222222 23322210
Q ss_pred ----CCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCC
Q 038542 209 ----VPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-RVKEAHEFIQKM--PIE 278 (475)
Q Consensus 209 ----~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~ 278 (475)
..+ ....|...+....+.+..+.|..+|+.. .. . ..+...|......-.+.+ +.+.|..+|+.. ...
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 011 1234555666666678899999999988 42 1 234445544333333334 699999999887 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++..|...+.-....|+.+.|..+|+++ +.....+...+..-...|+.+.+..++++..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24566777888888899999999999997 23455677777777788999999998888764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=8.8e-07 Score=74.13 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=95.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHHcCCH--
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM-LCRSGRV-- 265 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 265 (475)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+...+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 456677888888888889999998888888763 23356677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
++|...++++ ...| +...|..+...+...|++++|...++++++..|.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8898888877 3334 577888888999999999999999999999998875543
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=0.00011 Score=67.95 Aligned_cols=235 Identities=12% Similarity=0.032 Sum_probs=157.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
++.+-....+.+..++|++++.++... .| +...|+.--..+...+ .++++..+++.+++... -+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 444444445556667899999999875 45 4455666666666677 58899999999887753 3666777766666
Q ss_pred Hhc-C-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 158 AKC-G-DVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGL--------EAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 158 ~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 788999999988754 5577776665555555555 8999999998875 456777777777777
Q ss_pred cCCC-------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-C
Q 038542 225 HCGL-------VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV--------------------KEAHEFIQKM-P 276 (475)
Q Consensus 225 ~~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~ 276 (475)
+.+. ++++++.++.+.. -.+-|...|+-+-..+.+.|+. .+..++..++ +
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 7775 6788888887775 3344666777777777766653 3344444444 1
Q ss_pred C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCchHHH
Q 038542 277 I-------EANPIIWRTLISACCARGELKLAESITKRLI-GNEPMHESNYVL 320 (475)
Q Consensus 277 ~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~ 320 (475)
. .+++..+..|...|...|+.++|.++++.+. +.+|.....|..
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 1 2466677777777777788888888887775 556665444443
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=2.4e-07 Score=75.31 Aligned_cols=102 Identities=12% Similarity=-0.086 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555666677777777777777776652 2335566667777777777777777777766 3333 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 292 CARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
...|++++|...++++++..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 88888888888888888888776654
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=9.4e-07 Score=86.73 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=92.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
...+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34456677888888888877763 2334677888888888888888888888877 3444 678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHH--HHhccChhHHHHHHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHI--YAKLLRWEKKTKIREV 340 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 340 (475)
++|.+.++++++..|.+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888877 8899999999999874
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=2.1e-07 Score=78.00 Aligned_cols=120 Identities=4% Similarity=0.027 Sum_probs=100.5
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA-CCARGEL--K 298 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~-~~~~g~~--~ 298 (475)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4568888999999888763 3456788999999999999999999999987 3333 67788888888 7789998 9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|...++++++.+|.+...+..++.+|...|++++|...++...+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999988653
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.9e-07 Score=70.10 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677778888888888888776 3334 67788888888888889999999999888888888888888888898
Q ss_pred hccChhHHHHHHHHHHhC
Q 038542 327 KLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999998888877653
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=3.8e-06 Score=68.99 Aligned_cols=127 Identities=7% Similarity=-0.062 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 455666677777777777777777776653 345667777777777788888888888777763 23456677777778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRT--LISACCARGELKLAESITKRLI 308 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+...|++++|...|++. ...| +...+.. +...+...|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888776 2223 4444433 3334667788888888877654
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.2e-06 Score=74.82 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred CHHHHHH---HHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHH
Q 038542 61 GIELGRK---VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCP-DEITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 61 ~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~ 132 (475)
++++|.+ ++..-+.....+|+.+...+...|++++|+..+++.... +..| ...++..+...+...|++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 444433334556666666666666666666666665541 1111 1234444445555556666665
Q ss_pred HHHHHHHHc----CCCC--CccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 133 WVESFIEKQ----MVNR--SVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 133 ~~~~~~~~~----~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
..+....+. +-.+ ....+..+...|...|++++|...+++
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555554432 1010 122344444555555555555555444
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=6.1e-07 Score=72.95 Aligned_cols=98 Identities=5% Similarity=-0.064 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. .+.| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4455555666666666666666666542 2334556666666666666666666666665 2333 4566677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 038542 293 ARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|++++|...|+++++..|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=3.9e-06 Score=64.22 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555566666666666655542 2224455555666666666666666666555 2223 466677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766555554443
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=5.8e-06 Score=73.83 Aligned_cols=69 Identities=16% Similarity=0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM---PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+..+..++.+.|++++|++.|++. +..|. ...+.....++...|+.++|..+|+++...+|. ...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 344444444455555555544444 11121 223444555555666666666666666666665 4444433
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=4.9e-06 Score=74.32 Aligned_cols=185 Identities=8% Similarity=-0.086 Sum_probs=101.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCC-CHHHHHHH-------HHHHhccCChHHHHHHHHHHHHcCCCCC--------------
Q 038542 89 RLGLSTDAIDLFRQMQISGVCP-DEITMVTV-------LSACTDLGALEVGKWVESFIEKQMVNRS-------------- 146 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 146 (475)
+.++...|.+.|.+..+. .| ....|..+ ...+.+.+...++...+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 567777777777777764 34 34455555 2333333333333333332222 2221
Q ss_pred --------ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HH
Q 038542 147 --------VGLCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DV 214 (475)
Q Consensus 147 --------~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 214 (475)
..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 11233455666677777777777777653 222244445556667777777777776443321 111 22
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC-CC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGII-PK--IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN 280 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 280 (475)
.+..+..++...|++++|+..|++... |.. |. .........++.+.|+.++|...|+++ ...|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAND--SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 455566677777777777777777664 322 43 234555566677777777777777766 33444
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=8.1e-07 Score=69.31 Aligned_cols=94 Identities=11% Similarity=-0.095 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 4444 7888999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhC
Q 038542 329 LRWEKKTKIREVMDKR 344 (475)
Q Consensus 329 g~~~~a~~~~~~m~~~ 344 (475)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888753
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=1.9e-06 Score=65.36 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM--HESNYVLLSH 323 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 323 (475)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777777788888888777776 2223 5677888888888888999999999988888888 8888888888
Q ss_pred HHHhc-cChhHHHHHHHHHHhCC
Q 038542 324 IYAKL-LRWEKKTKIREVMDKRG 345 (475)
Q Consensus 324 ~~~~~-g~~~~a~~~~~~m~~~~ 345 (475)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 99999988888877644
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=2.9e-06 Score=72.50 Aligned_cols=170 Identities=12% Similarity=-0.063 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
.+......|++++|.+.|+..... ....|..+...+...|++++|+..|++..... |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 344455566677766666543321 33556667777778888888888888777642 221100000 00
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
+.- ... .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++
T Consensus 80 ~~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 000 01245667777788888888888888776 2233 6788888999999999999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHhccChhHHH-HHHHHHHh
Q 038542 308 IGNEPMHESNYVLLSHIYAKLLRWEKKT-KIREVMDK 343 (475)
Q Consensus 308 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 343 (475)
++..|.+...+..+..++...++.+++. ..+..|-.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888887776 44544443
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=2.8e-06 Score=77.17 Aligned_cols=190 Identities=8% Similarity=-0.057 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGL 188 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 188 (475)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555555666666666666666666553 22556667777777777777777777776653 2556777777888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
...|++++|+..|++..+.. |+. ..+...+.... ....+.. +...... ...++......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 88888888888888776532 211 01111111111 1111112 2222221 444455544444333 2688889
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 038542 268 AHEFIQKM-PIEANPI-IWRTLISACCAR-GELKLAESITKRLIGNE 311 (475)
Q Consensus 268 A~~~~~~m-~~~p~~~-~~~~li~~~~~~-g~~~~a~~~~~~~~~~~ 311 (475)
|.+.++.. ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 98888776 5566543 334444444444 66888999998876643
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.9e-06 Score=67.46 Aligned_cols=108 Identities=10% Similarity=-0.120 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666655542 2234455666666666666666666666655 2233 4667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHH
Q 038542 293 ARGELKLAESITKRLIGNE------PMHESNYVLLSHI 324 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 324 (475)
..|++++|...++++++.+ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7888888888888877777 6555554444443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=1.3e-06 Score=72.15 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.+...|..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555554 2222 455555555555666666666666666666666555556666666666
Q ss_pred ccChhHHHHHHHHHHh
Q 038542 328 LLRWEKKTKIREVMDK 343 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~ 343 (475)
.|++++|.+.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666555544
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=1.7e-06 Score=69.56 Aligned_cols=104 Identities=13% Similarity=-0.040 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555666667777777766666652 2334556666666777777777777777665 2233 4566777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
..|++++|...++++++..|.++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 8888888888888888887776655443
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=3.1e-06 Score=67.18 Aligned_cols=98 Identities=7% Similarity=-0.004 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888877776 2233 577888888888888888888888888888888888888888888
Q ss_pred HHhccChhHHHHHHHHHHhC
Q 038542 325 YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~ 344 (475)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88889999888888887653
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=1.1e-05 Score=62.38 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
.+..+...|...|++++|.+.|+++. ..+..+|..+...+...|++++|...|+++.... +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 34444455555555555555554432 1233444444444555555555555555544432 2233444444444444
Q ss_pred CCCHHHHHHHHHHhhh
Q 038542 226 CGLVDKGREYFDSMKN 241 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~ 241 (475)
.|++++|...++.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555554444443
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=3e-06 Score=69.91 Aligned_cols=107 Identities=13% Similarity=-0.010 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666777777777777777776652 2335667777777778888888888877776 3334 57888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+...|++++|...++++++..|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999888765443
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=2.7e-06 Score=66.88 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
+.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4455 78889999999999999999999999999999999999999999
Q ss_pred HHHhccChhHHHHHHHHHHhC
Q 038542 324 IYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=4e-06 Score=64.15 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3566778888999999999999999988 3334 7888999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=2.2e-06 Score=67.39 Aligned_cols=94 Identities=5% Similarity=-0.014 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-------hHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-------NYVL 320 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 320 (475)
..+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|++.++++++..|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888889999998888887 4445 6788999999999999999999999999988776543 5667
Q ss_pred HHHHHHhccChhHHHHHHHHHHh
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999988664
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6.4e-06 Score=66.09 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|.+...+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34444444455555555555555444 33343 34455555555555555555555555555555555555555555
Q ss_pred HHhccChhHHHHHHHHHHh
Q 038542 325 YAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~ 343 (475)
|...|++++|.+.+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.2e-05 Score=64.51 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWR 285 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 285 (475)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555555555666666666666665553 2333 455666666666777777777666665 2233 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+..++...|++++|...++++.+..|.+...+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 788888888888888888888888888776665555444
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=4.7e-06 Score=66.12 Aligned_cols=101 Identities=6% Similarity=-0.140 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLI 288 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 288 (475)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34555666666666666777776666666552 2234556666666777777777777776665 2223 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888777665
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=1.2e-05 Score=62.78 Aligned_cols=113 Identities=17% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 34444445555555555555555554432 223444555555555555555555555555442 122344455555555
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
.+.|++++|...|++. ...| +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555554 2222 3444444444444444
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.1e-05 Score=78.96 Aligned_cols=117 Identities=7% Similarity=-0.033 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334556666777766666543 2245666666666666667777766666666642 334556666666666666666
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDM--LCRSGRVKEAHEFIQ 273 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 273 (475)
+|.+.|++..+. . +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~-~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV-K-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH-S-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666553 1 1122333333333 555666666666665
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=0.0002 Score=65.68 Aligned_cols=229 Identities=12% Similarity=0.006 Sum_probs=126.9
Q ss_pred HcCChh-HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 89 RLGLST-DAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGA----------LEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 89 ~~g~~~-~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
+.|.+. +|++++..+... .|+.. .|+.--..+...+. ++++..+++.++... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344443 567777776653 34333 33322222222221 456666677666653 2355666666566
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----
Q 038542 157 FAKCG--DVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC---- 226 (475)
Q Consensus 157 y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---- 226 (475)
+.+.| +++++..+++++. .+|..+|+.-.-.+...|. .+++++.+.++.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66666 3777777777665 3456677766666666676 477777777777754 33455554444333332
Q ss_pred ----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 038542 227 ----------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS-----------GRVKEAHEFIQKM-PIEANPIIW 284 (475)
Q Consensus 227 ----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~ 284 (475)
+.++++++.+..... -.+-|...|+-+-..+.+. +.++++.+.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 345666666666664 2233455555444444443 3456666666666 444543 34
Q ss_pred HHHHHHH-----HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 285 RTLISAC-----CARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 285 ~~li~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..++ ...+..++....+.++.+++|...+-|.-+...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3222211 234667777778888888888766655554433
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=1.1e-05 Score=75.27 Aligned_cols=129 Identities=8% Similarity=-0.101 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--------------DVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 45666677777777888888888877776531111 467788888888888888888888888763
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE-SITKRLI 308 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 308 (475)
.+.+...|..+..+|...|++++|...|++. .+.| +...+..+...+...|+.++|. ..++++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2446778888888888888888888888877 3344 5778888888888888888883 4555554
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.3e-05 Score=78.29 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888999999999999999887 3334 68889999999999999999999999999999999999999999999
Q ss_pred hccChhHHHH-HHHHHH
Q 038542 327 KLLRWEKKTK-IREVMD 342 (475)
Q Consensus 327 ~~g~~~~a~~-~~~~m~ 342 (475)
+.|+++++.+ .+..|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988874 344443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=5.8e-06 Score=62.59 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NPIIWRTLIS 289 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~ 289 (475)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666666666666666666552 2234556666666677777777777776665 2223 4667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 038542 290 ACCAR-GELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 290 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.+... |++++|.+.++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888887776543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=1.5e-06 Score=74.34 Aligned_cols=148 Identities=10% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------
Q 038542 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTI---------------- 178 (475)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 178 (475)
........+.++.+.+.+....... ......+..+...|.+.|++++|...|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455667777666665433221 11344677788899999999999999997642 222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666666667777777777777666642 334556666666666666666666666665542 12234445555555
Q ss_pred HHHcCCHHHHH
Q 038542 259 LCRSGRVKEAH 269 (475)
Q Consensus 259 ~~~~g~~~~A~ 269 (475)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=8.1e-05 Score=68.70 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=151.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc-C-ChHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDKALKLFRSMNG---RTIVSWTSVIAGLAMH-G-RGLEAVA 199 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 199 (475)
+..++|..+.+.++.... .+..+|+.--..+...| ++++++++++.+.. ++..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344678889999988753 36667787777778888 59999999998763 4668898877777776 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH--------HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC-------
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--------KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR------- 264 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------- 264 (475)
+++++.+.. +-|...|+.-.-.+.+.|..+ ++++.++.+.+. -+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 999998864 345666655444444444444 889999988873 34466778777777877776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC------CCCCc
Q 038542 265 VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL--------------------KLAESITKRLIGNE------PMHES 316 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 316 (475)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 3445 788898877777766653 22222222222222 34556
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+...|+.+|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778899999999999999999999864
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.6e-05 Score=62.01 Aligned_cols=107 Identities=8% Similarity=-0.007 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C-CCCC----HHHHHH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----P-IEAN----PIIWRT 286 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ 286 (475)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. + ..++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444444444444444444431 1223344444444555555555555554444 1 0112 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 67777777777777777777777666 344444444443
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=1.3e-05 Score=65.88 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
...|..+..++...|++++|...++++++.+|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677888888888999999999999999888888888899999999999999999888877653
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=7.2e-06 Score=64.22 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHHHHHH
Q 038542 254 CMVDMLCRSGRVKEAHEFIQKM-PIEAN-P---IIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLLSHIY 325 (475)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 325 (475)
.+...+.+.|++++|...|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566666666666666665 11222 2 356666667777777777777777777777766 55567777777
Q ss_pred HhccChhHHHHHHHHHHh
Q 038542 326 AKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~ 343 (475)
...|++++|...++.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=1e-05 Score=62.91 Aligned_cols=96 Identities=6% Similarity=-0.025 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR 294 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 294 (475)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666677777777777776652 2335566666777777777777777777766 3334 566777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 038542 295 GELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 295 g~~~~a~~~~~~~~~~~p~~ 314 (475)
|++++|...++++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888888877754
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00011 Score=70.77 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR-----TI----VSWTSVIAGLAMHGRGLEAVALFEEMLE----AGVPPD-DVAF 216 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~ 216 (475)
..|+..|.+.|++++|.+.+...... +. ...+.+-..+...|+.++|..+++.... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 44555566666666666555544310 10 1122222233344566666666655533 122222 3345
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEAN--PII 283 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~ 283 (475)
..+...+...|++++|..+++.......-.. ....+..++..|...|++++|..++++. +..|. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 5566666666666666666665543211111 1345666666666667776666666554 11111 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 284 WRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+..+...+...|+++.|...+.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555566667777766666554
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.6e-05 Score=75.31 Aligned_cols=164 Identities=5% Similarity=-0.188 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-Chh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDV----AFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIP-KIE 250 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~ 250 (475)
++..+...|...|++++|.+++..+... +..++.. ..+.+-..+...|+.+.+..++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4667889999999999999999987653 1122222 23333444556789999999888765421 2222 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC----C
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE---PMH----E 315 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 315 (475)
.+..+...|...|++++|..++++. ..+| ...+|..++..|...|++++|..++++..... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788999999999999999999876 2122 35678889999999999999999999987543 222 2
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677788889999999888776643
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=9.8e-06 Score=65.44 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC--------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA--------N-----PIIWRTLISACCARGELKLAESITKRLIGN-------E 311 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p--------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~ 311 (475)
......+.+.|++++|...|++. .+.| + ...|..+..++...|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444555556666666666554 1111 1 338888999999999999999999999988 9
Q ss_pred CCCCchH----HHHHHHHHhccChhHHHHHHHHHHh
Q 038542 312 PMHESNY----VLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 312 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|++...| .....++...|++++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9988888 9999999999999999999988865
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=1.2e-05 Score=62.83 Aligned_cols=96 Identities=8% Similarity=0.081 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CchHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMH-------ESNYV 319 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 319 (475)
...+..+...+...|++++|...|++. ... .+...|..+...+...|++++|...++++.+..|.+ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778888999999999999999987 223 368889999999999999999999999999887665 67888
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=4.2e-05 Score=59.69 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=61.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKI---EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-N---PIIWRTLISA 290 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~---~~~~~~li~~ 290 (475)
+...+...|++++|...|+...+. . +.+. ..+..+..++.+.|++++|...|++. ...| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555566666666666666542 1 1122 35555666666677777777666665 2223 2 4566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
+...|++++|...++++.+..|.++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888887777654433
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.2e-05 Score=74.19 Aligned_cols=138 Identities=10% Similarity=-0.053 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++ .. ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHHH
Confidence 34666666677777777777777766542 01000 00001110 00 001245678888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5555 678899999999999999999999999999999998899999999988888877754
Q ss_pred H
Q 038542 337 I 337 (475)
Q Consensus 337 ~ 337 (475)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.5e-05 Score=64.72 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNE------PMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++..+...+...|++++|...+++..+.. +.....+..+..+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666677777777777777665432 11133566777788888888888887776654
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=6e-05 Score=59.00 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233344444444444444444444444443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.3e-05 Score=63.61 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPI 282 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 282 (475)
++..+...+...|++++|...++.......-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555554432110111 234455555666666666666665554 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
++..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777778888888888888876654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=3.2e-06 Score=65.32 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 262 SGRVKEAHEFIQKM-PI---EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555555 22 13 345566666666667777777777777776666666666667777777777777776
Q ss_pred HHHHHHh
Q 038542 337 IREVMDK 343 (475)
Q Consensus 337 ~~~~m~~ 343 (475)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=1.4e-05 Score=65.72 Aligned_cols=76 Identities=24% Similarity=0.141 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-chHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHI 324 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 324 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457778888888999999999888877 3344 678899999999999999999999999999999876 333344333
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.0011 Score=60.78 Aligned_cols=217 Identities=14% Similarity=0.060 Sum_probs=150.1
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC----------HHHHHHHHHhcC---CCChhHHHHHHHHHH
Q 038542 124 DLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------VDKALKLFRSMN---GRTIVSWTSVIAGLA 189 (475)
Q Consensus 124 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 189 (475)
+.|.+ ++|....+.++..... +..+|+.--......|. +++++.+++.+. .++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 4788888888876422 44455544333333333 678888888765 347788988887888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc----
Q 038542 190 MHGR--GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL-VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---- 262 (475)
Q Consensus 190 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 262 (475)
+.|+ +++++.++.++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999875 4566777766666777787 58999999999974 344666676666666554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 263 ----------GRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR-----------GELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 263 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++++.+|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888877 3344 788887665555554 4588999999999999998854443
Q ss_pred HHHHHH---HhccChhHHHHHHHHHHhC
Q 038542 320 LLSHIY---AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 320 ~l~~~~---~~~g~~~~a~~~~~~m~~~ 344 (475)
.++... ...|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 333221 2356677777777777653
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.9e-05 Score=73.66 Aligned_cols=146 Identities=15% Similarity=0.010 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 44666777778888899999888887764 354432 22333333333222 1 1256777778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HhccChhHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-AKLLRWEKKT 335 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 335 (475)
|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++..|.+..++..|..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3334 6778888888888888888888888888888888877777777663 3456677777
Q ss_pred HHHHHHHhC
Q 038542 336 KIREVMDKR 344 (475)
Q Consensus 336 ~~~~~m~~~ 344 (475)
+.+..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777653
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=5.7e-06 Score=63.86 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 301 (475)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666542 2 1223455666667777777777777777766 2233 5667777888888888888888
Q ss_pred HHHHHHHhCCCCCCch
Q 038542 302 SITKRLIGNEPMHESN 317 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~ 317 (475)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888877776543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.7e-05 Score=74.09 Aligned_cols=114 Identities=6% Similarity=-0.099 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 293 (475)
..+..+...+.+.|++++|...|+..... .|+.. .+...|+.+++...+. ...|..+..++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34666778888999999999999987753 23322 1223344444444332 2378889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.|++++|...++++++.+|.+..+|..+..+|...|++++|.+.+++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887653
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=0.00011 Score=71.76 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=98.7
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc----CC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDF----GI-IP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PIIWR 285 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 285 (475)
.+...|++++|+.++++..+.. |- .| ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999887776532 11 12 2467889999999999999999998876 34453 46789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 286 TLISACCARGELKLAESITKRLIG-----NEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|...|...|++++|+.+++++++ .+|+++. ....|..++...+++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5677655 45578888999999999999999998744
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.7e-05 Score=58.12 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYV 319 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 319 (475)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888877 3334 67889999999999999999999999999999988 66677
Q ss_pred HHHHHHHhccChhHHHHHH
Q 038542 320 LLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~ 338 (475)
.+..++...|+++.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7788888888777765444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00086 Score=66.97 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=117.3
Q ss_pred HHHHHHHHhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC--C
Q 038542 164 DKALKLFRSMN---GRTIVSWTSVIAGLAMHGR----------GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG--L 228 (475)
Q Consensus 164 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 228 (475)
++|.+.++++. ..+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 44555555543 2234556555555555555 677888888777754 345566666666666777 6
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-RVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR----------- 294 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----------- 294 (475)
++++.+.++.+.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888763 2335566776666777777 788888888877 4445 677787777766653
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhH
Q 038542 295 ---GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 295 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
+.++++.+.+.+++..+|.+..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999988887554
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00025 Score=69.08 Aligned_cols=127 Identities=11% Similarity=-0.037 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD---------------DVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
...|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++...+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3467777788888888888888888887742 112 477888888999999999999999988873
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAES-ITKRL 307 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~~ 307 (475)
.+.+...|..+..+|...|++++|...|++. .+.| +...|..+..++...++.+++.+ .+++|
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888899999999999999999887 5556 56678888888888888877764 34444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=2.6e-05 Score=62.95 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM--------PIEAN-PIIW----RTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 33774 5678 899999999999999999999999999887665
Q ss_pred HH
Q 038542 318 YV 319 (475)
Q Consensus 318 ~~ 319 (475)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 44
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=9e-05 Score=55.15 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+...|..+...+...|++++|...|+++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999887653
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=5.6e-05 Score=57.81 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=63.1
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...|++. ...| +...|..+...+...|++++|...++++++.+|.+...|..+..+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555554 3344 6778888888999999999999999999999998888899999999999999999999988765
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00012 Score=52.95 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777778888888888887776 2233 57778888888889999999999999999888888888888877776
Q ss_pred hcc
Q 038542 327 KLL 329 (475)
Q Consensus 327 ~~g 329 (475)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00022 Score=67.20 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNG-------------------RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
.+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 356677888888888888888876543 123445555555566666666666666555532
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
+.+...+..+..+|...|++++|...|+...+. .+.+...+..+..++.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223445555555555566666666555555542 112334444444444444444444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=4.5e-05 Score=61.43 Aligned_cols=85 Identities=6% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGE----------LKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
.+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455677777777766 3344 67777777777777665 5699999999999999999999999999998
Q ss_pred cc-----------ChhHHHHHHHHHHhC
Q 038542 328 LL-----------RWEKKTKIREVMDKR 344 (475)
Q Consensus 328 ~g-----------~~~~a~~~~~~m~~~ 344 (475)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999988764
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.0004 Score=67.78 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=93.7
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh----cCC-CCC-hhHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEA---GVPP---D-DVAFVGLLSACSHCGLVDKGREYFDSMKND----FGI-IPK-IEHYG 253 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~---g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~ 253 (475)
.+...|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|..++++...- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999988653 1222 2 457899999999999999999998887642 222 232 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 254 CMVDMLCRSGRVKEAHEFIQKM---------PIEANP-IIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.|...|...|++++|..++++. +-.|++ .+.+.+-.++...+.++.|+..++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 334433 3455666777788999999999988865
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00046 Score=66.23 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=89.0
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---h
Q 038542 256 VDMLCRSGRVKEAHEFIQKM---------PIEA-NPIIWRTLISACCARGELKLAESITKRLIG-----NEPMHES---N 317 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 317 (475)
+..+.+.|++++|..++++. +..| ...+++.|..+|...|++++|+.+++++++ .+|.++. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55566788999999888766 1222 246788999999999999999999999874 3555544 6
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 389 (475)
+..|..+|...|++++|..++++..+--. ..-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988865211 1123469999999988888776665
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00031 Score=53.55 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...|+...+ ..+.+...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444554443 22234555666666666666666666666665 2223 456677777777777777777777777776
Q ss_pred CCC
Q 038542 310 NEP 312 (475)
Q Consensus 310 ~~p 312 (475)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00044 Score=51.98 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.34 E-value=0.0034 Score=49.60 Aligned_cols=111 Identities=11% Similarity=-0.104 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----cCCHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----SGRVKE 267 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 267 (475)
+++++|++.|++..+.| .|+.. |...|...+.+++|..+|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777766 34443 555666666777777777776663 245556666666665 566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038542 268 AHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNE 311 (475)
Q Consensus 268 A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 311 (475)
|.++|++.--..++..+..|...|.. .++.++|.+.+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665222345555556555555 566666666666665554
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.34 E-value=0.0037 Score=49.44 Aligned_cols=109 Identities=15% Similarity=-0.041 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHH
Q 038542 92 LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKAL 167 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 167 (475)
++++|++.|++..+.| .|+.. +-..+...+.++.|...+.+..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666554 22222 3334444455555666666555543 34455555555555 45555555
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 038542 168 KLFRSMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 168 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 208 (475)
..|++..+ .+..++..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555432 244445555555555 455555555555555544
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.32 E-value=0.0011 Score=48.32 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 279 ANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|+..+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 477888888888865555 6999999999999999999999999999999999999999999998764
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.31 E-value=0.0051 Score=61.37 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC----------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL----------VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
...++|++.++++...+ +-+...|+.--.++...|+ ++++...++.+.+. -+-+...|..-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44568899999999864 3344556555555555566 89999999999873 34466778877888888
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--------
Q 038542 262 SG--RVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG-ELKLAESITKRLIGNEPMHESNYVLLSHIYAKL-------- 328 (475)
Q Consensus 262 ~g--~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 328 (475)
.| +++++.++++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 89 779999999998 3344 7888988888888888 899999999999999999999999888888774
Q ss_pred ------cChhHHHHHHHHHHh
Q 038542 329 ------LRWEKKTKIREVMDK 343 (475)
Q Consensus 329 ------g~~~~a~~~~~~m~~ 343 (475)
+.++++.+.++....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh
Confidence 557788877776654
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.00056 Score=65.59 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---hHHHHH
Q 038542 261 RSGRVKEAHEFIQKM---------PIEAN-PIIWRTLISACCARGELKLAESITKRLIG-----NEPMHES---NYVLLS 322 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 322 (475)
..|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|+++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888765 23343 46789999999999999999999999874 4555544 688999
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHH
Q 038542 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382 (475)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 382 (475)
.+|..+|++++|..++++..+--.. .-...||...++...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 9999999999999999988652211 12246888877766554
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00019 Score=57.78 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccCh
Q 038542 265 VKEAHEFIQKM-PIEA-NPIIWRTLISACCAR-----------GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 331 (475)
+++|...|++. .+.| +...|..+..+|... |++++|.+.|+++++++|.+. .|...+. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHH------HH
Confidence 34666666665 4444 456666777777665 589999999999999999874 3322222 23
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|.+++-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 55555555555443
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.17 E-value=0.0042 Score=44.38 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 22344444555555555555555555555443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0025 Score=50.67 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 279 ANPIIWRTLISACCARG---ELKLAESITKRLIGNE-P-MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
++..+.-.+..++++.+ ++++|+.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 57777777888888877 6668999999988877 6 446678888889999999999999998887632
Q ss_pred EEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 038542 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395 (475)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 395 (475)
|...++..+.+.+.+.+.+.|+.-
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 444455555555556777777653
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.11 E-value=0.0022 Score=47.33 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555432 2233444555555555555555555555444
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.06 Score=56.14 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=19.2
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
+++.|+++...+. +...|..+...+.+.++++.|.+.|.++
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4444444443332 3344555555555555555555555444
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.85 E-value=0.035 Score=42.53 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=98.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
+.-.|..++..++..+.... .+..-||.++.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34456777777777776653 24555666665555555555555555555443222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 268 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
....+-.++ .+.......++.+...|+-|.-.++...+....|.++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 245566778889999999999999999987777778899999999999999999999999999999975
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0069 Score=44.24 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPI-IWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
....+.+.|++++|...|++. ...| +.. .|..+..++...|++++|...++++++.+|.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888889998888877 3344 566 888888899999999999999999999999887765
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.79 E-value=0.025 Score=52.19 Aligned_cols=137 Identities=13% Similarity=0.002 Sum_probs=70.4
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----CC-CHHHH---HHHHHHhhh
Q 038542 176 RTIVSWTSVIAGLA--MHGR---GLEAVALFEEMLEAGVPPD-DVAFVGLLSACSH----CG-LVDKG---REYFDSMKN 241 (475)
Q Consensus 176 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~----~g-~~~~a---~~~~~~m~~ 241 (475)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+ ...+..+.-+|.. .+ ..... ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36667777766543 2333 46788888888885 455 3444444433320 00 00010 011111110
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
....+.+...|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0022344555555555555556666666666665 333555555555556666666666666666666666643
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0091 Score=57.19 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHhhhhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFG--IIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PIIWRTLI 288 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li 288 (475)
+.|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788999998887665311 122 2467889999999999999999999887 34454 45689999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----CCCCCCch
Q 038542 289 SACCARGELKLAESITKRLIG-----NEPMHESN 317 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 317 (475)
..|...|++++|+.+++++++ .+|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999864 56777644
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.77 E-value=0.014 Score=55.83 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=76.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFG--IIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PI 282 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 282 (475)
.+..+.+.|++++|+.+++...+... +.| ...+++.+..+|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556678899999999888765211 122 2467888899999999999999998876 34453 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCchHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLIG-----NEPMHESNYV 319 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 319 (475)
+++.|...|...|++++|+.+++++++ .+|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 789999999999999999999999864 5787765443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.74 E-value=0.0035 Score=45.88 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
....+...|++++|...++++++..|.+.. .+..+..+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999998 99999999999999999999999987643
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.13 Score=53.66 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=70.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (475)
..++..+.+.|.++.|.++.+ +. ..-.+.+..+|+++.|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 445555566666666554432 11 111344566777777777766653 4567777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
.|.+.|.++.. |..+...+...|+.+....+-+..... | -++.-..+|.+.|++++|.+++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776543 223444444455555544443333321 1 1233333445555555555555444
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.02 Score=41.50 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGR---VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765544 68888888887 4445 6778888888999999999999999999999987 333444
Q ss_pred HHHH
Q 038542 321 LSHI 324 (475)
Q Consensus 321 l~~~ 324 (475)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.27 Score=40.03 Aligned_cols=130 Identities=10% Similarity=0.089 Sum_probs=85.5
Q ss_pred HHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 038542 52 VHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 52 i~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (475)
.+...++| +++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 12 F~LAL~lg-~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYG-NLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTT-CHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455677 999999988776 4678899999999999999999999988764 34555556667777766
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
..+-......| -++.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 65555555443 234445556677888888888876543111 111112245556666665544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.24 E-value=0.024 Score=42.04 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-----P----IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
...+..|...+.+.|++..|...|+.. + -.+...++..|..++.+.|+++.|...++++.+..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455566666666666666666554 0 1235677888999999999999999999999999998866544
Q ss_pred HH
Q 038542 320 LL 321 (475)
Q Consensus 320 ~l 321 (475)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.24 E-value=0.18 Score=46.45 Aligned_cols=72 Identities=10% Similarity=0.067 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 253 (475)
+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 45555555555555566666666666666653 5655665566666666666666666665553 245544443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.15 Score=41.60 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=84.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
.+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788888888887776 3567888888888888888888888877543 334445555667776655
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
.+-+....+ | -++.....+.-.|+++++.++|.+.+.-|.... .....|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 544443332 2 245556667778888888888888764332211 123356677777776654
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.81 E-value=0.053 Score=41.41 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKL---AESITKRLIGNE-P-MHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|+..+--.+..++.+.++... ++.+++.+...+ | ........|.-+|.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555556666666665544 777777777665 4 2334556677777788888888887777765
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.62 E-value=0.038 Score=48.92 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhc-cChhH
Q 038542 265 VKEAHEFIQKM-PIEAN---PIIWRTLISACCA-----RGELKLAESITKRLIGNEPMH-ESNYVLLSHIYAKL-LRWEK 333 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 333 (475)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|.+.|+++++++|.. ..+++.....++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 45565 5677778877877 489999999999999999964 88899999988884 89999
Q ss_pred HHHHHHHHHhCCCccCCC
Q 038542 334 KTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 334 a~~~~~~m~~~~~~~~~~ 351 (475)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999888766543343
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.048 Score=43.27 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 247 PKIEHYGCMVDMLCRSG---RVKEAHEFIQKM-PIE-A--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
++..+...+.-++++.+ +.+++..+|+.. ... | +...+-.|.-++.+.|++++|.+.++.+++.+|.+..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555555555555555 334555555544 111 3 244556677788999999999999999999999875443
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.47 E-value=2.3 Score=42.39 Aligned_cols=249 Identities=13% Similarity=0.057 Sum_probs=131.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 038542 49 NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128 (475)
Q Consensus 49 ~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (475)
+.-+..+++.+ ++......+.. +..+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~-~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARRE-DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCC-CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 44455566666 88888887666 33355555566777778888877877777776655 33444556666666655544
Q ss_pred HHH--HHHHHHHHHcC-----------CCCCcc-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHHc
Q 038542 129 EVG--KWVESFIEKQM-----------VNRSVG-LCNALIDMFAKCGDVDKALKLFRSMNGRTIV---SWTSVIAGLAMH 191 (475)
Q Consensus 129 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 191 (475)
... .+=+..+...| ++++.. ....++..+.+- ..+....... .++.. .+...+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence 221 11112222211 111111 112222222211 1122222221 11111 11112222333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFV----GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
.+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788988888876543 22332222 2333334445355666666664432 2333333444444557799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 268 AHEFIQKMPIEA--NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 268 A~~~~~~m~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
|...|+.|+..+ ...-.--+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995443 222233355677788999999999998875
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.08 E-value=0.63 Score=36.14 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 278 EANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
.|+..+--.+..++.++.+ ..+++.+++.+....|.. ......|.-+|.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 4555555556666666554 446777777777766643 3345567777888888888888887777532
Q ss_pred EEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 038542 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394 (475)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 394 (475)
|...++..+-+.+.++|.+.|+.
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 34445555555555667777654
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.22 Score=50.78 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.-|...|+++.|.++.+++...-|.+-.+|..|..+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 456778999999999999999999999999999999999999999999998884
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.35 E-value=0.22 Score=36.66 Aligned_cols=65 Identities=9% Similarity=-0.113 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNE-------PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..-+..|...+...|+++.|...++.+++.. +.....+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788999999999999999999987642 334567889999999999999999999988763
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.19 E-value=1.9 Score=38.24 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHhcCCCCh--hHHHHHHH-HHHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHh
Q 038542 159 KCGDVDKALKLFRSMNGRTI--VSWTSVIA-GLAMH--GR------GLEAVALFEEMLEAGVPPD---DVAFVGLLSACS 224 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~ 224 (475)
+.|+..+-.+.+.+....++ ..|..++. ++... |. ...|...+++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 34555555566666654444 45665554 33332 22 34566666666663 455 446666666666
Q ss_pred cC-----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 038542 225 HC-----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS-GRVKEAHEFIQKM 275 (475)
Q Consensus 225 ~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m 275 (475)
.. |+.++|.+.|++..+- +-.-+..++....+.+++. |+.+++.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 7777777777776652 2111355566666666663 6666666666665
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.75 E-value=0.35 Score=37.97 Aligned_cols=56 Identities=7% Similarity=0.122 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 262 SGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 262 ~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.++.++|.++|+.+ ..+- ..+|-....--.++|+++.|.+++.+.+++.|.+....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 36777777777766 1111 77787777778889999999999999999998764433
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.00 E-value=0.0095 Score=56.41 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=100.6
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHH----------------h--
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF----------------D-- 70 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f----------------~-- 70 (475)
|...|..++.++.+.|.++.-..++.-+.+. ..+..+=+.|+-+|++.+ ++.+-++++ +
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~-rL~elEefl~~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC-SSSTTTSTTSCCSSSCTHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC-cHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5567888999999999999888888766655 445566678999999987 655433322 1
Q ss_pred ----------ccC------------------------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038542 71 ----------EMS------------------------ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116 (475)
Q Consensus 71 ----------~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 116 (475)
.+. ..++.||-.+-.+|...+++.-|.-.--.+.- .||. ..
T Consensus 159 lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~ 233 (624)
T 3lvg_A 159 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LE 233 (624)
T ss_dssp CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CS
T ss_pred CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HH
Confidence 111 01344455555555544444444333222221 1111 11
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHH
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------TIVSWTSVI 185 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 185 (475)
.++..|...|-+++-..+++.-... -.....+++-|.-.|+|- +.++-.+.++....+ ....|.-++
T Consensus 234 elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 234 ELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp GGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 2233334444444444444433311 123556777777777765 445555555443322 335688888
Q ss_pred HHHHHcCChHHHHH
Q 038542 186 AGLAMHGRGLEAVA 199 (475)
Q Consensus 186 ~~~~~~g~~~~A~~ 199 (475)
-.|.+...++.|..
T Consensus 312 fLY~~ydE~DnA~l 325 (624)
T 3lvg_A 312 FLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHhcchhHHHHHH
Confidence 88888888876653
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.55 E-value=0.0068 Score=57.37 Aligned_cols=213 Identities=12% Similarity=0.025 Sum_probs=141.0
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 123 (475)
...+|+.|..++.+.+ .+.+|.+-| ++..|+..|..+|.+..+.|.+++-+..+...++..-.|... +.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 3457888888888877 888887766 344577788888999999999999888887776653334333 46888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChh
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG------------------------RTIV 179 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------~~~~ 179 (475)
+.+++.+-+++. -.||..-.....+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888876544333 235665566777888888888888777766532 2556
Q ss_pred HHHHHHHHHHHcC------------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 180 SWTSVIAGLAMHG------------------------------RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 180 ~~~~li~~~~~~g------------------------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
+|-.+-.+|...+ .+++-+.+++.-... -+...-.|+-|.-.|++- .+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 7877777776644 455555555554422 245666777777777765 45
Q ss_pred HHHHHHHHHhhhhcCCCC------ChhHHHHHHHHHHHcCCHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIP------KIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
++-.+.++....+.+++- ....|.-++-.|..-..++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555555554444323322 34567888888888888776643
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.46 E-value=0.73 Score=35.09 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.-.|.-++.+.|+++.|.+.++.+++.+|.+..+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 34466678888999999999999999998875443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.24 E-value=3.1 Score=32.00 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=98.5
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDM--FAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~--y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
+...|+++ ..-.|.+++..++..+... .+..-||=+|.-....-+-+-..++++..-. -.| .+.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHh
Confidence 44555554 3446888888888887654 3444555555544444454444444444322 122 134
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-M-PIEANPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.|++......+-.+-. +.+....-++.+...|+-++..+++.. . ..+|++...-.+..||.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 4666666655554432 556777888999999999999999998 4 5567888999999999999999999999
Q ss_pred HHHHHhCCC
Q 038542 304 TKRLIGNEP 312 (475)
Q Consensus 304 ~~~~~~~~p 312 (475)
+.++-+.+-
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 999887763
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.15 E-value=0.91 Score=34.76 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444555555443 345666777666655532 34455666677777777777777776664
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.73 E-value=3.6 Score=32.32 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHhcCCCHHHHHHHHHHhhh
Q 038542 175 GRTIVSWTSVIAGLAMHGRG------LEAVALFEEMLEAGVPPDDV----AFVGLLS---ACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 175 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~ 241 (475)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888878888 8888888888775 666531 1111100 11223789999999999876
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
. +-.- ...|.....--.+.|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 3333 666666667777899999999999887
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.80 E-value=2.3 Score=30.47 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778777777776653 22222223345677899999999999999999999987655 4678888888888787
Q ss_pred HHcCCCCCHHHHHH
Q 038542 205 LEAGVPPDDVAFVG 218 (475)
Q Consensus 205 ~~~g~~p~~~t~~~ 218 (475)
...| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 555555543
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.57 E-value=9.6 Score=34.47 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF----EEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|.++- +-..+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677789999999999986542 34566778877666654 44566788999988888888777
Q ss_pred cCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038542 225 HCGLVD-KGREYFDSMKN---DFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298 (475)
Q Consensus 225 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 298 (475)
....-+ .=..+.+.+.+ +.| ..-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 654311 11223333221 123 23466777888999999999999999884 3444445666666655544433
Q ss_pred HHHHHHHHHHhCCCCCCchHH-HHHHHHHhccChhHHHHHHHHHHh
Q 038542 299 LAESITKRLIGNEPMHESNYV-LLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22223332 234456778899999888877665
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.46 E-value=2.1 Score=30.63 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=63.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778888777776653 22222223445678899999999999999999999987654 5788888888888888
Q ss_pred HHcCCCCCHHHHHH
Q 038542 205 LEAGVPPDDVAFVG 218 (475)
Q Consensus 205 ~~~g~~p~~~t~~~ 218 (475)
...| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8776 555555543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.38 E-value=1.3 Score=32.00 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 45567777777777888999999999999999999999999999998874 3344556777664
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.12 E-value=0.72 Score=43.28 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCccCCC
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK-----RGMKKIPG 351 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 351 (475)
...++.++...|+++++...++.+...+|.+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667777888899998888888888888888899999999999999999888888754 47665443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.51 E-value=1.9 Score=40.34 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChh
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN----DFGIIPKIE 250 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 250 (475)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|.+.|+...+ ++|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 334556666677777776666665542 44666677777777777777777776666543 235555543
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.68 E-value=19 Score=37.66 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=9.4
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~ 206 (475)
+|+-.|+.....++++.+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444554444445555444
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.53 E-value=30 Score=36.19 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=114.0
Q ss_pred HHhCCCCHHHHHHHHhccCC----CC--hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC---H-HHH-HHHHHH
Q 038542 55 YGSCEGGIELGRKVFDEMSE----RD--SVSWSAMIGGYARLGLSTDAIDLFRQMQISGV--CPD---E-ITM-VTVLSA 121 (475)
Q Consensus 55 ~~~~gg~~~~A~~~f~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~-~t~-~~ll~~ 121 (475)
....| +.++++.+++.... .+ +..-..+.-+.+..|..++++.++.......- .-+ . ... ..+.-+
T Consensus 384 lIh~g-~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 384 VIHKG-NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHTSS-CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhccC-chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34456 77888888877553 12 22333444556667776778887777654310 001 1 111 112112
Q ss_pred H--hccCChHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCh
Q 038542 122 C--TDLGALEVGKWVESFIEKQMVNRSV--GLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRG 194 (475)
Q Consensus 122 ~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 194 (475)
. ...++ +++...+..++...- +.. ...-+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2 23333 344444444443211 111 1222344445566777777777665432 2 233334444556678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFV---GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99988888887631 222 2232 3445778889988888899888863 223333333333344446666666666
Q ss_pred HHhC
Q 038542 272 IQKM 275 (475)
Q Consensus 272 ~~~m 275 (475)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 6644
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.43 E-value=11 Score=41.01 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 129 (475)
.++..+.+.+ ..+.|.++..-.++ +...--.+..+|...|++++|.+.|.+.-. |+..+.... ....
T Consensus 817 ~l~~~l~~~~-~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFK-QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHS-CTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHhh-hHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3444455555 66666665544433 444445566777888888888888876532 222211100 0000
Q ss_pred HHHHHHHHHHHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hHHHHHHHHHHHcCChHHHHH
Q 038542 130 VGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRS----MNGRTI----VSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 130 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~~ 199 (475)
. ...+.... ...-...|..++..+-+.|.++.+.++-.. ....+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111110 011223466677777777777776655432 222222 258888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
.+-.+-....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 98887665433 4456667776666666544
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.86 E-value=22 Score=36.28 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHhccCCCCh--hH--HHHHHHHHHHcC-ChhHHHHHHHHHHHC------CCCCCHH-
Q 038542 47 VQNTLVHMYGSCEGG-IELGRKVFDEMSERDS--VS--WSAMIGGYARLG-LSTDAIDLFRQMQIS------GVCPDEI- 113 (475)
Q Consensus 47 ~~~~li~~~~~~gg~-~~~A~~~f~~~~~~~~--~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~- 113 (475)
....|+....-.+ + .+.|..+|+++.+.++ .+ ..+++..+.+.+ +--+|.+++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~-~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 250 LMYSLKSFIAITP-SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHcccc-cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3344555555555 4 5778888887764332 22 122333322222 233455555554321 1222111
Q ss_pred ----------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 114 ----------TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 114 ----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
....-..-|...|+++.|..+-.+.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112233667899999999999988773 4467789999999999999999999998885
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.48 E-value=23 Score=33.69 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh-cCCCCC----hhH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEA--GVPPD---DVAFVGLLSACSHCGLVDKGREYFDSMKND-FGIIPK----IEH 251 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 251 (475)
..|...|...|++.+|.+++..+... |..+. ...+...++.|...+++..|..+++.+... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566677777777777777776532 21111 124555566777777888877777766421 111222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
|.+++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566677777777777777666555
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.20 E-value=18 Score=32.35 Aligned_cols=169 Identities=11% Similarity=0.061 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL----FRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
.|.++..-|.+.+ ++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~-~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSK-SYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4666777788888 89999887643 24456667877666554 45556678888888888888776
Q ss_pred hccC--Ch---HHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc---C
Q 038542 123 TDLG--AL---EVGKWVESFIEKQMV--NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH---G 192 (475)
Q Consensus 123 ~~~~--~~---~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 192 (475)
.... .. +-......+-.+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++--+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533 11 222233333333332 236778888999999999999999988743323455555555544443 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
...++ |...-.+++. |.-.+++..|..+|+...+.
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33222 1121222332 34567888888887766543
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.17 E-value=12 Score=40.52 Aligned_cols=123 Identities=7% Similarity=-0.101 Sum_probs=80.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEA----------------- 279 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p----------------- 279 (475)
++..+...+..+.+.++..-. +.++...-.+..+|..+|++++|.+.|++. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344444555555555433322 224444455667788899999999999887 1111
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCc----hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 280 ------NPIIWRTLISACCARGELKLAESITKRLIGNE-PMHES----NYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 280 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
-..-|..++..+.+++.++.+.++.+.+++.. +++.. .|..+...+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 11235667778888899999998888877654 33321 4677888889999999999888777655443
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.02 E-value=3 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-+..+-++.+....+.|++....+.|.+|.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456666777777789999999999999999999999999999999874 4444666777764
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.64 E-value=25 Score=33.39 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhh-cCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCH----HH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKND-FGIIPK---IEHYGCMVDMLCRSGRVKEAHEFIQKM-----PIEANP----II 283 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~----~~ 283 (475)
..|...+...|++.+|..++..+..+ ++..+. .+.+...+..|...+++.+|..++.++ ...+++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45777888899999999999887654 232222 356777788899999999999888876 122222 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 284 WRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55566666777888888777776653
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.42 E-value=7.5 Score=28.04 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 274 ~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33677899999999999999999999999999887554333445655443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.98 E-value=22 Score=32.15 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF----RQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
+|.++..-|.+.+ ++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k-~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQG-NWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556667788888 99999987643 244566677776655554 5555667888888887787777
Q ss_pred hccCChH-HHHHHHHHH----HHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 038542 123 TDLGALE-VGKWVESFI----EKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 123 ~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (475)
.....-+ .=..+...+ .+.| ..-|+.....+...|.+.|++.+|+.-|---.++.+..+..++--+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554311 112233333 3333 23467788888999999999999999885322223356655555554444321
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.+|...-.+++. |...+++..|...++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122233333443 4446788888777666554
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.97 E-value=4 Score=32.62 Aligned_cols=112 Identities=11% Similarity=-0.011 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANP 281 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~ 281 (475)
+..-+......|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. ...++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777776666654432233331 24455566666777777776666653 111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
...+. ....... -.. .+.+...-.-+..+|.+.|++++|..+++.+
T Consensus 103 --~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 --RPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred --ccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 10000 0000000 000 0122234556888999999999999998654
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.12 E-value=30 Score=32.21 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=11.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.65 E-value=26 Score=31.31 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL----FEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999986652 3456677887776665 444556788999888888887776
Q ss_pred cCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 038542 225 HCGLVD-KGREYFDSMKN---DFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR---G 295 (475)
Q Consensus 225 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g 295 (475)
.-..-+ .=.++++.+.+ +.| ..-++.....+...|.+.|++.+|+..|-. +..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11233333332 112 223677888899999999999999988763 2111455666665555444 4
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...++.-+.- ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333322211 223345677899999999887754
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.39 E-value=8.7 Score=30.67 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMN-----GRTI-------VSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.-+......|.++.|+-+.+.+. ++++ .+...+..++...|++..|...|++..+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556666677777666655432 1221 2344455666666666666666666533
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.16 E-value=13 Score=26.70 Aligned_cols=87 Identities=9% Similarity=-0.043 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
-..++|..+-+.+...+- ...+--.-+..+...| ++++|..+.+.+.-||.+.|-+|-.. +.|...++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQG-RYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 356788888888877653 3322222233345566 99999999999999999999887654 678888888888788
Q ss_pred HHCCCCCCHHHHH
Q 038542 104 QISGVCPDEITMV 116 (475)
Q Consensus 104 ~~~g~~p~~~t~~ 116 (475)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 45544443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.50 E-value=14 Score=26.60 Aligned_cols=87 Identities=15% Similarity=0.037 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
-..++|..+-+.+...+- ...+--.-+..+...| ++++|..+.+.+.-||.+.|-+|-.. +.|...++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRG-DYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 456788888888877653 2222222233345566 99999999999999999999887655 667778888877788
Q ss_pred HHCCCCCCHHHHH
Q 038542 104 QISGVCPDEITMV 116 (475)
Q Consensus 104 ~~~g~~p~~~t~~ 116 (475)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7766 45444443
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.93 E-value=18 Score=27.62 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred CCChhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 246 IPKIEHYGCMVDMLCRSGRVK---EAHEFIQKM-PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.|+..+--.+.-++.+....+ ++..+++.. ...| ....+--|.-++.+.|+++.|.+..+.+++.+|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 344444444555555555432 344555444 1123 2445556777888899999999999999999988754
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.86 E-value=39 Score=31.42 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=133.8
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHh-cCCC---ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHH----
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKF-QFGD---DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSW---- 80 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~---- 80 (475)
....+...|.+.|+.++..+++...... +.-| .......|++.+....+..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665555544221 1111 2234556666666655444444444433322 112233
Q ss_pred --HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCccHHH
Q 038542 81 --SAMIGGYARLGLSTDAIDLFRQMQISGVCPDE-----ITMVTVLSACTDLGALEVGKWVESFIEKQM--VNRSVGLCN 151 (475)
Q Consensus 81 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 151 (475)
.-++..|...|++.+|++++.++.+.=-..|. ..+..-+..|...+++..+...+....... +.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 14566677777777777777666553111111 123334444556666666666665554321 212222211
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 152 AL----IDMFA-KCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 152 ~l----i~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
.+ .-++. ..+++..|...|-+. ...|...|.. .+ .+...|..|.. ....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea-----------f~~f~~~~~~-~~-------------~~~lkYlvL~a-Ll~~ 234 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA-----------FEGFDSVDSV-KA-------------LTSLKYMLLCK-IMLG 234 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH-----------HHHHTTTCHH-HH-------------HHHHHHHHHHH-HHTT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH-----------HhcccccccH-HH-------------HHHHHHHHHHH-HHcC
Confidence 11 11223 445555554444331 0111111110 00 01223333322 2222
Q ss_pred CCHHHHHHHHH-HhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHHH
Q 038542 227 GLVDKGREYFD-SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPII---WRTLISACCARGELKLA 300 (475)
Q Consensus 227 g~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~---~~~li~~~~~~g~~~~a 300 (475)
. ..+-..++. .....+ ..|....+..++.+| +.+++.+...+++.. .+..|... +..|.....
T Consensus 235 ~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir-------- 303 (394)
T 3txn_A 235 Q-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML-------- 303 (394)
T ss_dssp C-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------
T ss_pred C-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------
Confidence 2 222222221 111112 345555566666654 456777777777765 24445543 222222221
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
...+.++. .|-....+..+.....- ..++++...-+|...|.
T Consensus 304 ~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 EQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 22233333 34455566666655532 67899999999988774
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.39 E-value=16 Score=27.93 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 269 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
+.-+-.+.+-|++.+..+.+.+|.+.+++..|.++++-+...-.+....|..++.
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3333344778999999999999999999999999999987654323445665543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.91 E-value=5 Score=34.96 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=40.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.+.+.|.+++|+.....- .-.| |...-..|+.-+|-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777777766554 3344 66666777788888888888888888887777753
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.63 E-value=24 Score=27.30 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 246 IPKIEHYGCMVDMLCRSGRVK---EAHEFIQKM-PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.|+..+--.+.-++.+....+ ++..+++.. ...| .....--|.-++.+.|+++.|.++.+.+++.+|.|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456655555666666665543 345555554 1123 2333445667899999999999999999999998754
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.76 E-value=40 Score=29.34 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
...+.|..++|++....-.+.. +-|...=..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666666666666655543 44555555566666666777777666666554
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.07 E-value=33 Score=28.14 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=5.9
Q ss_pred cHHHHHHHHHHhcCC
Q 038542 148 GLCNALIDMFAKCGD 162 (475)
Q Consensus 148 ~~~~~li~~y~~~g~ 162 (475)
.+-...+.+..+.|+
T Consensus 96 ~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 96 WVRQSAAVALGQIGD 110 (211)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 333333444444443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.38 E-value=31 Score=29.66 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=25.1
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHhCCCCHHHHHHHHhcc
Q 038542 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIH---VQNTLVHMYGSCEGGIELGRKVFDEM 72 (475)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~gg~~~~A~~~f~~~ 72 (475)
.|...++.|+++..+. +++.|..++.. ...+.+...++.| +.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHcC
Confidence 4445556666654433 34444333321 1123344445555 776666666553
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.39 E-value=80 Score=29.66 Aligned_cols=60 Identities=8% Similarity=-0.039 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPP--DDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
..+..-|.+.|+.++|.+.|.+++..-..+ -...+..+++.+...+++..+...++....
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555555555555554431111 123444455555555666666555555543
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.46 E-value=62 Score=26.69 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=55.7
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 266 KEAHEFIQKM-PIEANPI---IWRTLISACCARGELKLAESITKRLIG--NEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
+.+.+.|... ..+.|+. .|-..+..| ..++...+..+|..|.. .+...+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444 3344543 454445443 24457788999998875 456667789999999999999999999998
Q ss_pred HHHhCCCcc
Q 038542 340 VMDKRGMKK 348 (475)
Q Consensus 340 ~m~~~~~~~ 348 (475)
.=.+.+-.|
T Consensus 140 ~GI~~~A~P 148 (202)
T 3esl_A 140 LGAENNCRP 148 (202)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 877766443
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.58 E-value=86 Score=28.02 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=43.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 272 IQKMPIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 272 ~~~m~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
|...+++|. ..+..+-+..+.+.+++..|..+.+++++.+|.. ...++|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 444466663 4566777888899999999999999999999852 13455777776665543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.38 E-value=65 Score=30.30 Aligned_cols=33 Identities=0% Similarity=-0.179 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 312 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
|-.......|...+.- ..+++++.+..|...|.
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 4444556666666532 46778888888877663
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.33 E-value=61 Score=26.20 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=19.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGR 193 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 193 (475)
+..+-...+.+..+.|+.+....+...+.+++...-...+.++.+.+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333444444444444443333333333333444333333444444443
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.69 E-value=60 Score=32.52 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=18.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAV 36 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~ 36 (475)
..|. ++=-|.+.|++++|.++....
T Consensus 154 p~Wa-~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp EHHH-HHHHHHTTTCHHHHHHHHHHT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHh
Confidence 3554 455788999999999887655
No 278
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=61.42 E-value=9 Score=26.74 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=34.0
Q ss_pred CccHHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhc
Q 038542 371 HHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFAL 426 (475)
Q Consensus 371 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~ 426 (475)
.+...+++..+++-..+++..|+.||...+-. +...+.++.+-..||=
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 35567889999999999999999999765432 2334455555566653
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.19 E-value=42 Score=27.96 Aligned_cols=84 Identities=14% Similarity=-0.048 Sum_probs=43.9
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcC
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHV--QNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARLG 91 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 91 (475)
|...+..|+.+....+++.+.+.|..++... ..+.+...+..| +.+-+..+++.-..+ +..-++.+ ...+..|
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~ 90 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRLLVTAGASPMALDRHGQTAA-HLACEHR 90 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcC
Confidence 4445566888888778777766665444321 122344445556 777777776654332 22222222 2334455
Q ss_pred ChhHHHHHHHH
Q 038542 92 LSTDAIDLFRQ 102 (475)
Q Consensus 92 ~~~~A~~~~~~ 102 (475)
+.+-+..+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 55544444443
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.48 E-value=40 Score=28.91 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChh----HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHh
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSV----SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT--MVTVLSACT 123 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~ 123 (475)
..+...++.| +++....+++.-...+.. -++ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+
T Consensus 7 ~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNE-DVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 3444555666 888777777664433211 122 333444556553 3344444555443210 012222333
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSVGL--CNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
..|+.+ +.+.+.+.|..++..- ..+.+...+..|+.+-...+++.-
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 445544 3344444554443211 112233445566666655555543
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.61 E-value=72 Score=24.94 Aligned_cols=49 Identities=4% Similarity=-0.015 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 300 AESITKRLIGNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 300 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
+..+|..|...+ ...+..|...+..+...|++.+|.++++.=.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 778888887654 5556678888888999999999999997777665443
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.04 E-value=82 Score=25.38 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=90.7
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
.+|..+-...+...++.+ ..+....+.+.+..++...-...+.++...+..+ +...+..+.. .++...-...+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 99 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIG-DERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVA 99 (201)
T ss_dssp CSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 455555555556666655 5444445555555566666666667777777653 4445555543 3676666677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
+.+.++.+....+.. +. -.++..+-...+.+..+.|+.+....+...+.+++...-...+.++.+.|. .++...+
T Consensus 100 L~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 100 LGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 777776543333332 22 245666777777788877775544444455555666555556666666654 3455555
Q ss_pred HHHHH
Q 038542 202 EEMLE 206 (475)
Q Consensus 202 ~~m~~ 206 (475)
..+..
T Consensus 175 ~~~l~ 179 (201)
T 3ltj_A 175 EKLAE 179 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.23 E-value=43 Score=25.35 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCCCC---hhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSERD---SVSWSAMIGGYARLGL--STDAIDLFRQMQISGVCPD 111 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 111 (475)
.+.++.-|...| +.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~-D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSG-DISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 355677777777 8888888888876552 2333444444444432 3456677777776665443
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.07 E-value=74 Score=24.00 Aligned_cols=64 Identities=13% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTI---VSWTSVIAGLAMHGR--GLEAVALFEEMLEAGVPPDD 213 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 213 (475)
.+.++.=|...|+.++|.+.++++..|.- ....++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34577778888888888888888875522 333444444444432 34566777777766654433
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.65 E-value=92 Score=24.70 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 300 AESITKRLIGNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 300 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
...+|..|...+ ...+..|...+..+...|++.+|.++++.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 667788877554 5566678899999999999999999998877766444
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.82 E-value=64 Score=27.44 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQIS--GVCP----DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
-+..+....++++|++++++.... ++++ +.......+..-.....-..+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466777788888888887766542 2221 1111122222222222222333333333 21 2334444445556
Q ss_pred HHhcCCHHHHHHHHHh
Q 038542 157 FAKCGDVDKALKLFRS 172 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~ 172 (475)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666543
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.21 E-value=1.1e+02 Score=24.83 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
.++..+-...+...++.+ +.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .+|...-...+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~a 104 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG-DERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVA 104 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 467777777777777777 655555556666667777777777788877764 34455555543 4676666677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
+.+.++.+....+. .+. -.++..+-...+.+..+.|+.+....+...+.+++...-...+.++.+.+. .++...+
T Consensus 105 L~~~~~~~~~~~L~-~~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 105 LGQIGDERAVEPLI-KAL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHHHCCGGGHHHHH-HHT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHH-HHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 77777654332222 232 245666666777777777765444444444445565555555666666654 3455555
Q ss_pred HHHHH
Q 038542 202 EEMLE 206 (475)
Q Consensus 202 ~~m~~ 206 (475)
..+..
T Consensus 180 ~~~l~ 184 (211)
T 3ltm_A 180 EKLAE 184 (211)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.63 E-value=69 Score=25.03 Aligned_cols=63 Identities=11% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTI---VSWTSVIAGLAMHGR--GLEAVALFEEMLEAGVPPD 212 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 212 (475)
.+.++.=|...|+.++|.+.++++..|.- ....++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34567777778888888888888765522 333444444444322 3346666766666654433
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.29 E-value=37 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCCCC---hhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSERD---SVSWSAMIGGYARLGL--STDAIDLFRQMQISGVCPD 111 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 111 (475)
.+.++.-|...+ +.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~-D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSG-DISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455677777766 8888888888776552 2333444444444322 3446666667766664443
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.07 E-value=1.8e+02 Score=30.63 Aligned_cols=86 Identities=6% Similarity=-0.110 Sum_probs=53.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC----------------
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEAN---------------- 280 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 280 (475)
++..|...|..+-+.++.. -.+.++..--.+..+|...|++++|.+.|+++ ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5556666677665554332 22334444345677788889999999999887 22110
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 281 -------PIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 281 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
..-|..++..+-+++-++-+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 113555666667777777777777777654
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.83 E-value=1.1e+02 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
.++.......+..+.+.|+.++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 445555666677888888888888877554
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.41 E-value=81 Score=27.36 Aligned_cols=118 Identities=7% Similarity=0.035 Sum_probs=59.2
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKI---EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a 300 (475)
+..|+.+-+..+++. |..++. ..+...+...+..|+.+-+.-+++.-....+...-.+.+...+..|+.+.+
T Consensus 103 ~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp HHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 445666555444443 333332 121234445566777776666666543222321223344445577888888
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIP 350 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 350 (475)
..+++.-...+..+.......+...+..|+. ++.+.+.+.|..+..
T Consensus 178 ~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 7777776555433322222222233345554 345556677765533
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.83 E-value=42 Score=23.89 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
...++|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467888888888888888888888888877676655543
No 294
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.86 E-value=40 Score=23.97 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.7
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
+.+.|.++++.++.+...+|..++.++...|+..-|..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 78899999999999999999999999987777665543
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.83 E-value=1.1e+02 Score=29.52 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh--HH-HHHHHHHHHcCCHHHHHHHHHhC
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIE--HY-GCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~-~~li~~~~~~g~~~~A~~~~~~m 275 (475)
...++.+++-|.+.+.++.|..+.....--....++.. .| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34567777777777777777777776542000011111 11 22344555677777777776654
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.60 E-value=2.7e+02 Score=26.87 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH--HHHH-HHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDD--VAFV-GLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~~-~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
..+|.++..|...+.++.|..+..+..-- ...+|. .+|. -+...+.-.+++.+|.+.+....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677777777777777777777665310 001111 1222 233444556677777766666554
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.47 E-value=3.4e+02 Score=28.55 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=71.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 038542 51 LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV 130 (475)
Q Consensus 51 li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 130 (475)
++..+...+ ..+.|.++..-++. ++..--.+..+|...|++++|.+.|++.- .|+.++...... ...
T Consensus 816 l~~~L~~~~-~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFK-QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHTT-CHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHH
T ss_pred HHHHHHHhc-HHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhh
Confidence 556666677 88888887766665 55444568889999999999999998864 344322111000 000
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hHHHHHHHHHHHcC
Q 038542 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS----MNGRTI----VSWTSVIAGLAMHG 192 (475)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 192 (475)
...++... +. .......|..++..+-+.+.++.+.++-+. +...|. ..|+.+..+.+..|
T Consensus 883 ~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111100 00 011123667777777778877776655433 333333 35666666665544
No 298
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=34.67 E-value=11 Score=21.87 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=10.1
Q ss_pred ccccCcCcchhh
Q 038542 440 NLRVCNDCHSAT 451 (475)
Q Consensus 440 ~~~~~~~~~~~~ 451 (475)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 799999999644
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.37 E-value=1.9e+02 Score=23.73 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 248 (475)
.|-..+..+ ..+...++.++|..|...|+--. +.-|......+...|++++|..+|+.-.+. +-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 444444433 23446688888888888776544 456677777778888888888888887774 55663
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.61 E-value=1.2e+02 Score=24.74 Aligned_cols=57 Identities=4% Similarity=-0.066 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.+...+..|+.+.+..+++.-......+.... +-+....+.|+.+-+..+++...+.
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 34445566777766666554222221111111 2233445667776666665544433
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.59 E-value=2e+02 Score=23.62 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=39.6
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHcCCC
Q 038542 80 WSAMIGGYAR---LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA-----LEVGKWVESFIEKQMVN 144 (475)
Q Consensus 80 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 144 (475)
+--+|+++.+ ..+++.|+-.+-+|.+.| .|.-..-..++-+.-..|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445666654 478999999999999988 6655555555555544442 33444555555555644
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.38 E-value=1.3e+02 Score=23.02 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 346677887776543 3455555566667788899998875 666677777778888988887643
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.81 E-value=1.8e+02 Score=22.38 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 345667776665433 3455555556667788888888775 55666777777778888888754
No 304
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.60 E-value=2.5e+02 Score=23.85 Aligned_cols=232 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHH-HcCCC
Q 038542 67 KVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG-ALEVGKWVESFIE-KQMVN 144 (475)
Q Consensus 67 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~-~~~~~ 144 (475)
.++..+..+|...-...+.++.+.+ ..+++..+..+.. .++...-...+.++.+.+ .......+...+. ..--.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND 102 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC
Q ss_pred CCccHHHHHHHHHHhcC------CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 145 RSVGLCNALIDMFAKCG------DVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
++..+-...+.+..+.| ...-...+...+..++...-...+.++...|. .++...+..+.. .++...-..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHH
Q ss_pred HHHHHhcCC-CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038542 219 LLSACSHCG-LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297 (475)
Q Consensus 219 ll~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~ 297 (475)
.+.+....+ ..+.+...+..+..+ ++..+-...+.++++.|...-...+...+.- |+ +-...+.++...|+
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d-~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQD----KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-NT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-SS--CCHHHHHHHHHHCC-
T ss_pred HHHHHHhhccCcHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC-cc--HHHHHHHHHHhcCc-
Q ss_pred HHHHHHHHHHHhCCCCC
Q 038542 298 KLAESITKRLIGNEPMH 314 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~ 314 (475)
..+...+..+.+..++.
T Consensus 251 ~~~~~~L~~~l~~~~~~ 267 (280)
T 1oyz_A 251 KTLLPVLDTMLYKFDDN 267 (280)
T ss_dssp GGGHHHHHHHHTTSSCC
T ss_pred hhhhHHHHHHHhcCCCc
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.26 E-value=2.3e+02 Score=23.26 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 265 VKEAHEFIQKMPIEANPI--I-----WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~--~-----~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
++.|+.+++.+...-|.. . --..+..|.+.|.+++|.+++++..+..+.+...-.-|+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 677888888884333321 1 12234578899999999999999888776655544444443
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.13 E-value=1.5e+02 Score=26.41 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 272 IQKMPIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 272 ~~~m~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
|...+++|. ..+...-+..+.+.+++..|..+.+++++++|... ..++|.++...-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444466663 44567777888999999999999999999987521 3455777776666554
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.69 E-value=1.8e+02 Score=22.25 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444444333333333333333444443
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.41 E-value=2.8e+02 Score=24.87 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCCCC---hhHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCC
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSERD---SVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 109 (475)
...++.-|...| +.++|.+.++++..|. ......+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~-d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLN-DMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 345666677766 7888888877776652 112222222222211 123445566666655543
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.28 E-value=1.5e+02 Score=24.89 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 298 KLAESITKRLIGNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 298 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
+....+|..|...+ ......|...+..+...|++.+|.++++.=.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45667888887554 5566788899999999999999999998777665443
No 310
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.01 E-value=93 Score=23.57 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=7.2
Q ss_pred HhcCCHHHHHHHHHh
Q 038542 158 AKCGDVDKALKLFRS 172 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~ 172 (475)
++.|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344555554444444
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.97 E-value=1.8e+02 Score=23.02 Aligned_cols=16 Identities=0% Similarity=0.163 Sum_probs=8.9
Q ss_pred hCCCCHHHHHHHHhccC
Q 038542 57 SCEGGIELGRKVFDEMS 73 (475)
Q Consensus 57 ~~gg~~~~A~~~f~~~~ 73 (475)
..| +.+....++..-.
T Consensus 14 ~~g-~~~~v~~ll~~~~ 29 (201)
T 3hra_A 14 NQR-DTKKVKEILQDTT 29 (201)
T ss_dssp HTT-CHHHHHHHHTCTT
T ss_pred Hhc-cHHHHHHHHHcCC
Confidence 334 6666666665443
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.45 E-value=1.7e+02 Score=26.20 Aligned_cols=83 Identities=8% Similarity=-0.076 Sum_probs=36.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCC------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 256 VDMLCRSGRVKEAHEFIQKMP------IE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
+...+..|+.+-+..+++... +. .|..-++.| ...+..|+.+.+..+++.-...+..+...... +..-+..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A~~~ 254 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLSVRA 254 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHh
Confidence 334456677777777776531 11 111112222 23345677665544444321222112111222 2333455
Q ss_pred cChhHHHHHHHH
Q 038542 329 LRWEKKTKIREV 340 (475)
Q Consensus 329 g~~~~a~~~~~~ 340 (475)
|+.+-+..+++.
T Consensus 255 g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 255 AMVLLTKELLQK 266 (364)
T ss_dssp CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHc
Confidence 777666666554
No 313
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.13 E-value=92 Score=23.11 Aligned_cols=43 Identities=7% Similarity=-0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 038542 98 DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140 (475)
Q Consensus 98 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (475)
-+|+.+....+.|+...-..-+..+...++++.|..++..+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666656655544444444456778888888888887765
No 314
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.74 E-value=3.5e+02 Score=24.58 Aligned_cols=211 Identities=9% Similarity=-0.020 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCCCh--hHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSERDS--VSWSAMIGGYARLGL--STDAIDLFRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
....+|.-|...+ +.++|...++++..|.- ..-..+|..-...++ -+.+-.++..+.. ++-+.......+...+
T Consensus 56 ~~~~ii~EYf~~~-d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 56 TLTPIIQEYFEHG-DTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3567788888888 99999999999876642 222223332222221 2334455555553 4444443333333333
Q ss_pred hccCCh----HHHHH----HHHHHHHcC-CCCCccHHHHHHHHHHhcC--CHHHHHHHHHh---------cCC-----CC
Q 038542 123 TDLGAL----EVGKW----VESFIEKQM-VNRSVGLCNALIDMFAKCG--DVDKALKLFRS---------MNG-----RT 177 (475)
Q Consensus 123 ~~~~~~----~~a~~----~~~~~~~~~-~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~---------~~~-----~~ 177 (475)
....++ ..|.. ++..++..+ ++|.- +.......-+..| -++.|..++.. .-. +.
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~-l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~ 212 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTY-IDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQP 212 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSST-TGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSC
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHH-HHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCcc
Confidence 333322 12222 233333333 33321 1110000000000 02223322211 000 01
Q ss_pred h----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC--HHHHHHHHHHhhhhcCCCCChhH
Q 038542 178 I----VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL--VDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 178 ~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
+ ...+.++.-|...|+.++|...++++..-... .......+..+.-+.++ .+...+++..+... |+-+....
T Consensus 213 veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~ 290 (358)
T 3eiq_C 213 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 1 24577888899999999999999888532111 23445556666665543 45677888888875 66665555
Q ss_pred HHHHHHHHHHc
Q 038542 252 YGCMVDMLCRS 262 (475)
Q Consensus 252 ~~~li~~~~~~ 262 (475)
...+...+...
T Consensus 291 ~~Gf~~vl~~l 301 (358)
T 3eiq_C 291 KRGYERIYNEI 301 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.67 E-value=1.9e+02 Score=22.25 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444455555544443333333333344444444
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.25 E-value=2.1e+02 Score=26.43 Aligned_cols=299 Identities=14% Similarity=0.125 Sum_probs=140.5
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHc
Q 038542 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHV--QNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARL 90 (475)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 90 (475)
.|...+..|+++..+ .+++.|..++... ..+.+...++.| +.+-+..+++.-... +..-++.| ...+..
T Consensus 17 ~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVK----NLLQRGASPNVSNVKVETPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHH----HHHHTTCCSCCSSSCCCCHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHH
T ss_pred HHHHHHHCCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHC
Confidence 445556667776444 4455565554321 123344445556 888888888764432 22223333 333456
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc--HHHHHHHHHHhcCCHHHH
Q 038542 91 GLSTDAIDLFRQMQISGVCPDEIT--MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG--LCNALIDMFAKCGDVDKA 166 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A 166 (475)
|+.+-+. .+.+.|..|+... -.+.+...+..|..+....++ +.+..++.. ...+.+...++.|+.+-+
T Consensus 91 g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 91 GHTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp TCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 6654333 3333454443211 112333445567766555444 344332211 112234556678888888
Q ss_pred HHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 167 LKLFRSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV---AFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..+++.-..++. ..++. +...+..|+.+ +++.+.+.|..|+.. .++ .+...+..|+.+-+..+++.
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-- 234 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQY-- 234 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHT--
T ss_pred HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHc--
Confidence 777775443321 11222 23334566654 344445555444332 122 23344556777665555542
Q ss_pred hhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 241 NDFGIIPKI---EHYGCMVDMLCRSGRVKEAHEFIQKMPIEA---NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 241 ~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
|..++. ...+ .+...++.|..+-+.-+++.- ..+ +..-++. +...+..|+.+.+..+++.-...+..+
T Consensus 235 ---g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 308 (437)
T 1n11_A 235 ---GGSANAESVQGVT-PLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATT 308 (437)
T ss_dssp ---TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred ---CCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCC
Confidence 333322 1112 233445677776666666543 111 1111222 233345677776666665533333222
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
......| ...+..|+.+-+.. +.+.|..
T Consensus 309 ~~g~t~L-~~A~~~g~~~~v~~----Ll~~gad 336 (437)
T 1n11_A 309 RMGYTPL-HVASHYGNIKLVKF----LLQHQAD 336 (437)
T ss_dssp SSCCCHH-HHHHHSSCSHHHHH----HHHTTCC
T ss_pred CCCCCHH-HHHHHcCcHHHHHH----HHhcCCC
Confidence 2222222 33345677664444 3455543
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.04 E-value=1.5e+02 Score=26.50 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=5.9
Q ss_pred CHHHHHHHHhcc
Q 038542 61 GIELGRKVFDEM 72 (475)
Q Consensus 61 ~~~~A~~~f~~~ 72 (475)
+.+-+..+++.-
T Consensus 65 ~~~~v~~Ll~~g 76 (364)
T 3ljn_A 65 CVDTAKYLASVG 76 (364)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHCC
Confidence 555555554443
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.69 E-value=2.6e+02 Score=22.69 Aligned_cols=18 Identities=22% Similarity=-0.077 Sum_probs=9.3
Q ss_pred HHHHHcCCCcHHHHHHHH
Q 038542 17 LKACAGIGDLNLGKSVHG 34 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~ 34 (475)
|...+..|+++....++.
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445566665555544
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.56 E-value=1.2e+02 Score=27.28 Aligned_cols=150 Identities=11% Similarity=0.099 Sum_probs=77.7
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcC
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLG 91 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 91 (475)
....++.-|...|++++|...++++....+ ....+...+..+.-+.....+.+.+++..+.+.+..+-..+..|+.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~--- 88 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY--- 88 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH---
Confidence 356788889999999999888877642211 1122333333333222212445566666666666777777777653
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHH---HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 92 LSTDAIDLFRQMQISGVCPDEITMVTVLSA-CTDLGALEV---GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
+.++.+.++.-. .|....+..-+-+ +...|-+.. ...+...+.+.|. .......++..+.+....+.+.
T Consensus 89 ---~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 89 ---EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPKKVG 161 (339)
T ss_dssp ---HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred ---HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHHHHH
Confidence 334444444332 4565555443332 444443332 1122223333332 2233444555666666667777
Q ss_pred HHHHh
Q 038542 168 KLFRS 172 (475)
Q Consensus 168 ~~~~~ 172 (475)
++|.+
T Consensus 162 ~~~~~ 166 (339)
T 1ug3_A 162 TLWRE 166 (339)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.32 E-value=1.5e+02 Score=23.23 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=48.2
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CCCCChhHHHHHHHHHHHcCCHH
Q 038542 195 LEAVALFEE-MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 195 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544443 456788887654 356677777777888999999987631 33456667667788889888764
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.68 E-value=1.9e+02 Score=22.31 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=35.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 101 RQMQISGVCPDEITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 101 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345566776665543 3445554444 555677788777776655555444444555555554
No 322
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.48 E-value=1.4e+02 Score=20.66 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHH
Q 038542 160 CGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 197 (475)
....++|..+++.++.++..+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45678888888888888888888888888877764433
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.86 E-value=2.5e+02 Score=23.39 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcCCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 038542 229 VDKGREYFDSMKNDFGIIPKI------EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGE 296 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~ 296 (475)
++.|+.+|+.+.+...+..+. -.--..+-.|.+.|.+++|.+++++. +-.|+..-...-+....+.+|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.43 E-value=4.8e+02 Score=24.74 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
.+.+.|.++ +.+.|++-....|..-.+.+...|++++|.++-...+. ++..|.+.+-..-..-|+..--+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 445544333 34556665555666666777788888888877766553 344555444444444566666666777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038542 203 EMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277 (475)
Q Consensus 203 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (475)
.+.+.| +.+..--.-+.+.-...|+.+-..+++.+ -.+..+.+.-..+ +..+..-|+.+|.+.+.
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCC
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHcCC
Confidence 776665 44554444455555556665555544433 1344444322211 33455566666665543
No 325
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.42 E-value=1.9e+02 Score=20.02 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 96 (475)
...+++.+.+.|+-. ..-+..+.. ... ..+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~~---~~t-~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVRN---EPT-QQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHT---SSS-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHc---CCC-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 446777777777433 223333322 334 789999999999999999999999999887765444
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.83 E-value=1.6e+02 Score=23.09 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=29.3
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCccHHHHHHHHHHhcCC
Q 038542 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ--MVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 104 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~ 162 (475)
.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455554432 23445555555555666666666655 444444333334555555553
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.55 E-value=1.7e+02 Score=23.92 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=8.5
Q ss_pred ccCChHHHHHHHHHHHHcC
Q 038542 124 DLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~ 142 (475)
..|+.+....+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.54 E-value=2.9e+02 Score=22.57 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 038542 81 SAMIGGYAR---LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG 126 (475)
Q Consensus 81 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (475)
.-+|+++.+ ..+++.|+-.+-+|.+.|-.|.-..-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345666654 4789999999999999886665555444554444333
No 329
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.98 E-value=1.8e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhccCCC
Q 038542 49 NTLVHMYGSCEGGIELGRKVFDEMSER 75 (475)
Q Consensus 49 ~~li~~~~~~gg~~~~A~~~f~~~~~~ 75 (475)
+.++.-|...+ +.++|.+.++++..|
T Consensus 221 ~~lL~EY~~s~-D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 221 DMLLKEYLLSG-DISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHCCT
T ss_pred HHHHHHhccCC-CHHHHHHHHHHccCC
Confidence 44444455544 555555555555443
No 330
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.61 E-value=4.2e+02 Score=23.39 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC--HHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL--VDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
.+.++.-|...|+.++|...++++...... .......+..+.-+.++ .+....++..+.+. |+-+.......+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 455677777777777777777776421111 12334445555554432 34556667666654 555444443333333
Q ss_pred H
Q 038542 259 L 259 (475)
Q Consensus 259 ~ 259 (475)
+
T Consensus 247 l 247 (307)
T 2zu6_B 247 Y 247 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 331
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.54 E-value=5.5e+02 Score=24.73 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=21.3
Q ss_pred CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 312 PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 312 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
|.+......|-.-|.+.|++-+|.+++..+...+
T Consensus 214 ~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 214 GSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp C---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred ccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 4444555666667777777777777777776653
No 332
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.31 E-value=7.1e+02 Score=25.94 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhh
Q 038542 218 GLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
.++.+++...+.+...++++...
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 34444444455554444444443
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.17 E-value=1.3e+02 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCCHHHHHHHHhccC
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHV--QNTLVHMYGSCEGGIELGRKVFDEMS 73 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~gg~~~~A~~~f~~~~ 73 (475)
|...+..|+.+ +.+.+.+.|..++... ..+.+...++.| +.+-+..+++.-.
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKYLIKAGA 68 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhC-CHHHHHHHHhCCC
Confidence 44445567765 4445555665443321 122344445556 8888877776543
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.93 E-value=1.7e+02 Score=21.85 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=29.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (475)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4555666666677777777777776655566666556666555553
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.30 E-value=1.7e+02 Score=21.87 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (475)
.+..-.|.++++.+.+. +...+..|....++.+...|-
T Consensus 23 ~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 23 LDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 33344444455544443 333344444444445555444
Done!