Query 038544
Match_columns 69
No_of_seqs 117 out of 365
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 4.7E-34 1.6E-38 170.7 5.9 55 14-69 2-56 (64)
2 2yus_A SWI/SNF-related matrix- 98.6 2.8E-07 9.5E-12 55.6 7.2 60 4-69 3-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 98.2 2E-06 7E-11 50.3 4.7 52 15-69 4-58 (75)
4 2cu7_A KIAA1915 protein; nucle 98.1 6.7E-06 2.3E-10 48.0 5.1 49 15-69 5-53 (72)
5 1x41_A Transcriptional adaptor 98.0 2E-05 6.7E-10 44.6 5.5 49 16-69 5-53 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 97.8 8E-05 2.7E-09 44.3 5.9 62 5-68 4-65 (73)
7 2iw5_B Protein corest, REST co 97.6 0.00016 5.4E-09 51.7 6.8 56 8-69 122-177 (235)
8 1ity_A TRF1; helix-turn-helix, 97.6 0.00018 6E-09 41.4 5.8 51 14-67 5-55 (69)
9 2xag_B REST corepressor 1; ami 97.6 0.00014 4.9E-09 56.1 6.9 54 10-69 371-424 (482)
10 2cqq_A RSGI RUH-037, DNAJ homo 97.6 0.00016 5.5E-09 42.8 5.5 48 18-68 7-54 (72)
11 2elk_A SPCC24B10.08C protein; 97.6 0.0002 6.7E-09 40.3 5.3 47 19-69 9-55 (58)
12 2d9a_A B-MYB, MYB-related prot 97.5 0.00034 1.2E-08 39.0 6.1 50 15-69 4-53 (60)
13 2eqr_A N-COR1, N-COR, nuclear 97.5 0.00062 2.1E-08 38.6 6.8 46 14-65 7-52 (61)
14 3sjm_A Telomeric repeat-bindin 97.4 0.00061 2.1E-08 39.2 6.1 46 17-65 9-54 (64)
15 1gvd_A MYB proto-oncogene prot 97.3 0.00061 2.1E-08 37.0 5.3 46 19-69 3-48 (52)
16 1guu_A C-MYB, MYB proto-oncoge 97.3 0.00043 1.5E-08 37.5 4.6 45 19-68 3-47 (52)
17 1w0t_A Telomeric repeat bindin 97.3 0.00075 2.6E-08 36.9 5.2 45 19-66 2-46 (53)
18 2dim_A Cell division cycle 5-l 97.1 0.0018 6.2E-08 37.1 6.1 49 15-68 5-53 (70)
19 2cjj_A Radialis; plant develop 97.0 0.0016 5.6E-08 40.2 5.3 48 19-68 8-55 (93)
20 2din_A Cell division cycle 5-l 96.9 0.002 6.8E-08 36.5 5.0 48 14-68 4-51 (66)
21 2yqk_A Arginine-glutamic acid 96.9 0.0054 1.8E-07 35.0 6.6 46 15-65 5-50 (63)
22 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.0035 1.2E-07 38.0 5.9 48 14-67 51-98 (105)
23 2llk_A Cyclin-D-binding MYB-li 96.8 0.0048 1.6E-07 36.6 6.1 50 10-66 14-63 (73)
24 2aje_A Telomere repeat-binding 96.7 0.0048 1.6E-07 39.0 5.9 51 13-66 7-59 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.0057 1.9E-07 37.4 5.9 48 14-67 48-95 (107)
26 2hzd_A Transcriptional enhance 96.6 0.0025 8.4E-08 39.2 4.1 51 17-68 4-70 (82)
27 1gv2_A C-MYB, MYB proto-oncoge 96.5 0.0066 2.3E-07 36.7 5.4 45 19-68 4-48 (105)
28 1h8a_C AMV V-MYB, MYB transfor 96.5 0.009 3.1E-07 37.4 6.0 48 14-67 74-121 (128)
29 3osg_A MYB21; transcription-DN 96.4 0.0065 2.2E-07 38.2 5.1 49 13-67 5-53 (126)
30 1h8a_C AMV V-MYB, MYB transfor 96.4 0.012 4.1E-07 36.8 6.2 50 14-68 22-71 (128)
31 2ltp_A Nuclear receptor corepr 95.3 0.00061 2.1E-08 41.3 0.0 49 15-69 12-60 (89)
32 4eef_G F-HB80.4, designed hema 96.2 0.0016 5.3E-08 39.5 1.3 46 20-67 21-66 (74)
33 1wgx_A KIAA1903 protein; MYB D 96.2 0.013 4.5E-07 34.9 5.3 45 21-67 10-54 (73)
34 3osg_A MYB21; transcription-DN 96.1 0.014 4.8E-07 36.6 5.7 47 14-66 57-103 (126)
35 1h89_C C-MYB, MYB proto-oncoge 96.1 0.016 5.4E-07 37.4 6.0 48 14-67 105-152 (159)
36 2juh_A Telomere binding protei 96.1 0.013 4.4E-07 37.9 5.4 54 10-66 8-63 (121)
37 2roh_A RTBP1, telomere binding 96.0 0.031 1.1E-06 36.1 6.9 51 12-65 24-76 (122)
38 3zqc_A MYB3; transcription-DNA 95.9 0.013 4.5E-07 36.9 4.7 48 14-67 49-96 (131)
39 2k9n_A MYB24; R2R3 domain, DNA 95.8 0.019 6.4E-07 35.1 5.0 42 20-66 2-43 (107)
40 1h89_C C-MYB, MYB proto-oncoge 95.8 0.029 9.9E-07 36.2 6.1 50 14-68 53-102 (159)
41 2ckx_A NGTRF1, telomere bindin 95.8 0.03 1E-06 33.8 5.7 43 21-66 2-46 (83)
42 1x58_A Hypothetical protein 49 95.1 0.14 4.7E-06 29.8 6.7 45 16-64 5-50 (62)
43 2crg_A Metastasis associated p 94.7 0.14 4.9E-06 29.6 6.1 45 16-65 5-49 (70)
44 3zqc_A MYB3; transcription-DNA 94.2 0.03 1E-06 35.2 2.6 44 19-67 2-45 (131)
45 4a69_C Nuclear receptor corepr 93.6 0.18 6.1E-06 30.7 5.2 40 18-63 42-81 (94)
46 1qgp_A Protein (double strande 82.6 2.1 7.1E-05 24.6 4.0 42 23-67 12-53 (77)
47 4b4c_A Chromodomain-helicase-D 77.5 4.4 0.00015 26.5 4.8 51 15-66 3-53 (211)
48 1ign_A Protein (RAP1); RAP1,ye 75.9 2 6.8E-05 30.7 2.9 51 17-69 6-58 (246)
49 2lm1_A Lysine-specific demethy 73.2 1.9 6.5E-05 26.0 2.0 31 25-56 45-79 (107)
50 1c20_A DEAD ringer protein; DN 70.4 0.77 2.6E-05 28.9 -0.3 31 25-56 53-87 (128)
51 2li6_A SWI/SNF chromatin-remod 70.3 0.81 2.8E-05 28.3 -0.2 41 25-68 50-94 (116)
52 2jxj_A Histone demethylase jar 69.6 3.8 0.00013 24.2 2.7 43 25-68 37-85 (96)
53 2cxy_A BAF250B subunit, HBAF25 69.1 2.5 8.6E-05 26.4 1.9 40 25-67 52-95 (125)
54 2kk0_A AT-rich interactive dom 66.7 1.3 4.4E-05 28.6 0.2 31 25-56 65-99 (145)
55 1ig6_A MRF-2, modulator recogn 65.3 0.64 2.2E-05 28.3 -1.4 32 24-56 33-68 (107)
56 1ku3_A Sigma factor SIGA; heli 65.3 13 0.00043 20.1 4.2 37 28-67 16-52 (73)
57 2eqy_A RBP2 like, jumonji, at 61.5 10 0.00035 23.5 3.7 33 25-58 43-79 (122)
58 2p7v_B Sigma-70, RNA polymeras 60.2 13 0.00046 19.7 3.6 24 41-67 24-47 (68)
59 1tty_A Sigma-A, RNA polymerase 58.2 19 0.00064 20.2 4.2 29 36-67 32-60 (87)
60 3b73_A PHIH1 repressor-like pr 57.6 17 0.0006 22.2 4.2 45 20-68 8-52 (111)
61 2jrz_A Histone demethylase jar 56.2 10 0.00035 23.3 3.0 31 25-56 41-75 (117)
62 3hm5_A DNA methyltransferase 1 54.8 33 0.0011 20.8 5.6 42 20-65 31-75 (93)
63 2da3_A Alpha-fetoprotein enhan 53.5 24 0.00081 19.5 4.0 52 11-65 13-64 (80)
64 1ofc_X ISWI protein; nuclear p 53.4 13 0.00044 27.0 3.5 47 20-66 213-269 (304)
65 1ofc_X ISWI protein; nuclear p 50.2 23 0.00079 25.6 4.4 42 21-67 112-153 (304)
66 1xmk_A Double-stranded RNA-spe 47.3 20 0.00068 20.9 3.1 38 25-68 11-49 (79)
67 2rq5_A Protein jumonji; develo 44.4 36 0.0012 21.2 4.2 44 25-69 43-93 (121)
68 1sfu_A 34L protein; protein/Z- 42.5 50 0.0017 19.3 4.6 39 25-66 12-50 (75)
69 3t72_q RNA polymerase sigma fa 42.2 44 0.0015 19.7 4.2 23 42-67 39-61 (99)
70 2jpc_A SSRB; DNA binding prote 41.1 20 0.0007 18.2 2.3 22 43-67 14-35 (61)
71 1qp6_A Protein (alpha2D); de n 39.2 20 0.00067 18.3 1.9 12 23-34 22-33 (35)
72 1kkx_A Transcription regulator 38.6 9.4 0.00032 23.9 0.7 41 25-68 49-93 (123)
73 2ebi_A DNA binding protein GT- 38.0 47 0.0016 18.8 3.7 49 16-64 1-57 (86)
74 3e49_A Uncharacterized protein 37.4 37 0.0013 24.3 3.8 34 23-57 273-306 (311)
75 3e02_A Uncharacterized protein 37.3 37 0.0013 24.3 3.8 34 23-57 273-306 (311)
76 2gmg_A Hypothetical protein PF 36.9 29 0.00098 21.7 2.8 27 41-67 23-50 (105)
77 2da6_A Hepatocyte nuclear fact 36.5 25 0.00086 21.6 2.5 39 13-52 4-43 (102)
78 3lot_A Uncharacterized protein 35.8 33 0.0011 24.7 3.3 34 23-57 276-309 (314)
79 1qbj_A Protein (double-strande 35.6 63 0.0022 18.5 5.1 42 23-67 8-49 (81)
80 3mzy_A RNA polymerase sigma-H 34.7 48 0.0016 19.2 3.5 37 25-66 97-134 (164)
81 3hug_A RNA polymerase sigma fa 34.1 45 0.0015 18.6 3.2 21 44-67 55-75 (92)
82 2g7r_A Mucosa-associated lymph 33.9 15 0.0005 23.6 1.1 46 18-67 56-102 (117)
83 2o8x_A Probable RNA polymerase 32.0 55 0.0019 16.7 3.6 22 43-67 32-53 (70)
84 3c57_A Two component transcrip 31.1 14 0.00049 21.2 0.6 22 43-67 43-64 (95)
85 2ba3_A NIKA; dimer, bacterial 29.6 33 0.0011 17.5 1.9 26 14-39 14-39 (51)
86 1or7_A Sigma-24, RNA polymeras 29.3 65 0.0022 19.4 3.6 40 25-67 129-178 (194)
87 1x3u_A Transcriptional regulat 28.1 71 0.0024 16.8 4.1 22 43-67 32-53 (79)
88 1fse_A GERE; helix-turn-helix 28.0 38 0.0013 17.5 2.0 38 21-67 11-48 (74)
89 1je8_A Nitrate/nitrite respons 27.7 37 0.0013 18.8 2.0 22 43-67 37-58 (82)
90 2lfw_A PHYR sigma-like domain; 27.6 34 0.0012 20.8 2.0 22 43-67 110-131 (157)
91 1wh5_A ZF-HD homeobox family p 27.1 89 0.0031 17.6 6.2 53 13-66 15-69 (80)
92 2vob_A Trypanothione synthetas 25.9 50 0.0017 26.0 3.1 37 22-63 279-315 (652)
93 3ulq_B Transcriptional regulat 25.1 45 0.0015 19.1 2.1 22 43-67 45-66 (90)
94 3hrs_A Metalloregulator SCAR; 24.6 1.2E+02 0.0039 19.7 4.3 37 28-67 5-42 (214)
95 2q1z_A RPOE, ECF SIGE; ECF sig 23.8 13 0.00044 22.6 -0.5 12 56-67 162-173 (184)
96 2xag_B REST corepressor 1; ami 23.7 17 0.00057 28.0 0.0 20 20-39 190-209 (482)
97 2rnj_A Response regulator prot 22.9 39 0.0013 18.9 1.5 22 43-67 45-66 (91)
98 3ugo_A RNA polymerase sigma fa 22.8 18 0.00061 24.6 0.0 25 42-67 213-237 (245)
99 2k9i_A Plasmid PRN1, complete 22.8 65 0.0022 16.1 2.3 22 18-39 12-33 (55)
100 2z90_A Starvation-inducible DN 22.7 92 0.0031 19.5 3.4 22 34-55 74-95 (161)
101 2lnb_A Z-DNA-binding protein 1 22.7 1.2E+02 0.004 18.2 3.6 31 24-56 18-48 (80)
102 2io8_A Bifunctional glutathion 22.4 47 0.0016 25.9 2.3 36 22-62 266-301 (619)
103 2xb0_X Chromo domain-containin 22.4 2.1E+02 0.0071 20.1 6.1 46 18-64 2-47 (270)
104 1bw5_A ISL-1HD, insulin gene e 21.9 1E+02 0.0034 16.3 4.3 48 14-64 2-49 (66)
105 1p4w_A RCSB; solution structur 21.8 62 0.0021 18.9 2.3 38 21-67 34-71 (99)
106 2y7e_A 3-keto-5-aminohexanoate 21.3 1.1E+02 0.0036 21.7 3.8 32 23-55 250-281 (282)
107 1zs4_A Regulatory protein CII; 20.6 78 0.0027 18.8 2.6 29 22-56 10-38 (83)
108 3chv_A Prokaryotic domain of u 20.3 1.2E+02 0.004 21.4 3.9 32 23-55 248-279 (284)
109 3no5_A Uncharacterized protein 20.1 1.1E+02 0.0038 21.4 3.7 32 22-54 243-274 (275)
110 2l3n_A DNA-binding protein RAP 20.0 16 0.00054 22.5 -0.7 30 20-52 22-51 (104)
111 1tc3_C Protein (TC3 transposas 20.0 79 0.0027 14.4 5.1 39 23-69 7-45 (51)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=100.00 E-value=4.7e-34 Score=170.65 Aligned_cols=55 Identities=45% Similarity=0.701 Sum_probs=52.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
.++|+|++||+|||++||+||++||+ ++|+||.|+++|||+|||++||+||||||
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999995 89999999999999999999999999998
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.57 E-value=2.8e-07 Score=55.65 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred ccccccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 4 SQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 4 ~~~~~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
|+....+........+-.||+|.+..|++||+.+|+ .+..|.+.|+ +-|..||+.|-++|
T Consensus 3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 444444455555566889999999999999999994 4999999986 57999999998875
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2e-06 Score=50.30 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCc---cChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYK---ASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~---A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+...+-.||+|.+..|+++|..+|. +. -.+..|.+.| +|-|..||++|-|+|
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~ 58 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKY 58 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445668999999999999999994 22 4689999987 468999999998875
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.08 E-value=6.7e-06 Score=47.99 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=41.8
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+...+-.||+|.+..|+++|+.+|- .+..|...| ||-|..+|+.|.++|
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQY 53 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3455778999999999999999996 599999976 678999999997654
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.97 E-value=2e-05 Score=44.59 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
.-.+-.||+|....+++||+.+|. ..++.|.+.| ++-|..|++.|-++|
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQM--CTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHH--TTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 345668999999999999999993 2499999998 578999999987654
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.76 E-value=8e-05 Score=44.35 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=47.9
Q ss_pred cccccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 5 QRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 5 ~~~~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
..+..|+..++...+-.||+|....|++||..+|......+.+|.+.| ||-|..+|+.|-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 4 GSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKL 65 (73)
T ss_dssp CSSSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHH
T ss_pred cccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence 344556666677778889999999999999999942223577887766 68999999998653
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.62 E-value=0.00016 Score=51.74 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=46.7
Q ss_pred ccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 8 GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 8 ~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
..|......+..-.||+|.+..|++|+..+|- + +..|.++++ +-|..||++|-++|
T Consensus 122 ~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~Vg--TKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 122 PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDVIG--NKSVVQVKNFFVNY 177 (235)
T ss_dssp GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHHHS--SCCHHHHHHHHHHT
T ss_pred cccCCCCCCccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHHcC--CCCHHHHHHHHHHH
Confidence 34555566778889999999999999999995 3 999999855 56999999998765
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.62 E-value=0.00018 Score=41.43 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=43.0
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+++.+-.||+|.-...+++|+.+|. ..+..|.+.|+..|-|..|++.+-.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 55 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWR 55 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHH
Confidence 46678899999999999999999993 2599999999765889999887643
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.61 E-value=0.00014 Score=56.11 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=45.9
Q ss_pred ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
|......+..-+||+|.|..|++|+..+|. .+..|.+.++.. |..||++|-++|
T Consensus 371 r~~e~~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~ 424 (482)
T 2xag_B 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCCCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHT
T ss_pred cCCccccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 444445567889999999999999999996 399999998876 999999999876
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.59 E-value=0.00016 Score=42.84 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=40.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 18 ~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
..-.||.|.+..|..|+..++......+.+|.+.| |-|.++|+.|-++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHH
Confidence 34579999999999999999863345688999998 4799999999764
No 11
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.56 E-value=0.0002 Score=40.26 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=39.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+-.||+|...++++||+.+|. ..+..|.+.|+. +-|..|++.|-++|
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHH
Confidence 456999999999999999993 249999999862 56999999987653
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00034 Score=39.04 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=41.6
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+...+-.||+|....++++|..+|. ..+..|.+.| +|-|..|++.+-++|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4566789999999999999999993 2499999986 578999999876654
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00062 Score=38.58 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=37.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH 65 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH 65 (69)
+.++..-.||+|.|..|++|+..+|- ....|...| |+-|..+|..|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHH
Confidence 34566789999999999999999994 388998775 57799988765
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.40 E-value=0.00061 Score=39.19 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544 17 LPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH 65 (69)
Q Consensus 17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH 65 (69)
..|-.||+|.-...+++|+.+|.. .++.|.+.+...|-|..|++-.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHH
Confidence 346679999999999999999942 4999999998889999998754
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.33 E-value=0.00061 Score=36.99 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+-.||+|....++++|+.+|. ..+..|.+.| +|-|..+++.+-+.|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 567999999999999999995 2599999887 678999999876554
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.32 E-value=0.00043 Score=37.54 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=38.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+-.||+|....++++|+.+|. ..+..|.+.| +|-|..||+.+-++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 568999999999999999995 3599999986 57899999987654
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.27 E-value=0.00075 Score=36.91 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.3
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
|-.||+|.....+++|+.+|. ..+..|.+.|+..|-|..+++.+-
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 46 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRW 46 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHH
Confidence 568999999999999999994 259999999876688999988653
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0018 Score=37.10 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+...+-.||+|....++++|..+|. ..+..|...|+ |-|..|++.+-..
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYE 53 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHH
Confidence 4456778999999999999999993 25999999986 7899999887544
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.98 E-value=0.0016 Score=40.21 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=39.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
.-.||+|....|++|+..+|......+.+|.+.+ ||-|..+|+.|-+.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~ 55 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEI 55 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence 3469999999999999999842234588998887 58899999998653
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.002 Score=36.53 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
.+...+-.||+|....++++++.+|. .+..|.+++ |-|..+|+.|-+.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~ 51 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEF 51 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHH
Confidence 34556778999999999999999995 599999955 4799999988654
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.0054 Score=34.98 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH 65 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH 65 (69)
+...+-.||+|.+..|.+|+...|- + ...|...| |+.-|..+|..+
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHH
Confidence 4555679999999999999999995 2 78887632 455688887643
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.84 E-value=0.0035 Score=37.97 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=40.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+.-.+-.||+|....++++|..+|. .+..|.+.| ||-|..+|+.|-.
T Consensus 51 ~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 51 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHH
T ss_pred CCcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHH
Confidence 44556778999999999999999995 489998864 7899999998753
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.79 E-value=0.0048 Score=36.57 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=40.0
Q ss_pred ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
..+..+.-.+-.||+|.-...++++..+|.. +..|.+.| |-|..+|+.+-
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l---gRt~~q~knRw 63 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL---GRSASSVKDRC 63 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH---TSCHHHHHHHH
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh---CCCHHHHHHHH
Confidence 3445567788899999999999999999952 99999999 78999998764
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.70 E-value=0.0048 Score=38.98 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=41.8
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544 13 NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL 66 (69)
Q Consensus 13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL 66 (69)
...++.+-.||+|.-...+++|+.+|. -.++.|+..+. .+|-|..+++.+-
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence 346788999999999999999999995 24999999763 4889999988653
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.65 E-value=0.0057 Score=37.42 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=40.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+.-.+-.||+|....++++|..+|. .+..|.+.| ||-|..+|+.|-.
T Consensus 48 ~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~ 95 (107)
T 2k9n_A 48 NPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWM 95 (107)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHH
Confidence 44556779999999999999999995 499999886 7889999998743
No 26
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=96.64 E-value=0.0025 Score=39.15 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCccCh----------------HHHHHHcCCCCCCHHHHHhhhcc
Q 038544 17 LPRLRWTPELHKHFSQAVERLGGKYKASP----------------KRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~P----------------k~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+..-+|.++|-..|++|++.+--...... ..|...-| .--|+.||.||+|.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHH
Confidence 44678999999999999987742111111 11222222 34699999999993
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.48 E-value=0.0066 Score=36.69 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=38.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+-.||+|....++++|+.+|.. .+..|.+.| ||-|..+|+.+-+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHh
Confidence 5679999999999999999962 499999987 67899999887554
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.46 E-value=0.009 Score=37.42 Aligned_cols=48 Identities=27% Similarity=0.426 Sum_probs=40.4
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+.-.+-.||+|....+++++..+|. .+..|.+.| ||-|..+|+.|-.
T Consensus 74 ~p~~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 74 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWN 121 (128)
T ss_dssp CSSSCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHH
Confidence 34456778999999999999999995 489998875 7899999998754
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.40 E-value=0.0065 Score=38.20 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.9
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 13 NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+.+...+..||+|.-...+++|+.+|. .++.|.+.| +|-|..++..+-.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~ 53 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWK 53 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHh
Confidence 345677889999999999999999995 499999887 4678888877643
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.37 E-value=0.012 Score=36.85 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
.+.-.+-.||+|.-..++++|+.+|.. .+..|.+.| ||-|..+++.+-..
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHN 71 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHH
Confidence 455667889999999999999999952 499999987 57799998876543
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.33 E-value=0.00061 Score=41.27 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=40.0
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+.-.+-.||+|....|+++|..+|- .+..|...| +|-|..+|+.|-+.|
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNY 60 (89)
Confidence 3445668999999999999999995 388888875 678999999886544
No 32
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.19 E-value=0.0016 Score=39.45 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-.||.+....|..|+..++....-.+.+|.+. |||-|.++|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHH
Confidence 46999999999999999875333456677665 45889999999976
No 33
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.17 E-value=0.013 Score=34.91 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.||.+....|.+|+..++....-.+.+|.+.+ +|-|.++|..|-+
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYM 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHH
Confidence 59999999999999999843334577887765 5679999998853
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.14 E-value=0.014 Score=36.63 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
.+...+-.||+|....++++|..+|. .+..|.+.| ||-|..+|+.+-
T Consensus 57 ~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw 103 (126)
T 3osg_A 57 APSISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRW 103 (126)
T ss_dssp STTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHH
Confidence 34455668999999999999999996 389998865 688999999874
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.12 E-value=0.016 Score=37.43 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+...+-.||+|....+++++.++|. .+..|...| ||-|..+|+.|-.
T Consensus 105 ~p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~ 152 (159)
T 1h89_C 105 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWN 152 (159)
T ss_dssp CTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHH
T ss_pred CccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHH
Confidence 45556788999999999999999995 489998864 7899999998754
No 36
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.10 E-value=0.013 Score=37.86 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=44.5
Q ss_pred ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544 10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL 66 (69)
Q Consensus 10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL 66 (69)
|.....++.|-.||+|.-...+++|+.+|. -.+..|+..+. .+|-|..+++.+-
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRW 63 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKW 63 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHH
Confidence 344567888999999999999999999995 25999999875 3888998888653
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.01 E-value=0.031 Score=36.10 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=42.3
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhh
Q 038544 12 YNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSH 65 (69)
Q Consensus 12 ~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSH 65 (69)
....++.|-.||+|.-...+++|+.+|. -.++.|+..+. .++-|..+++.+
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdR 76 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDK 76 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHH
Confidence 3456788999999999999999999995 25999999763 488999998764
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.91 E-value=0.013 Score=36.93 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=39.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+...+-.||+|....++++|..+|.. +..|.+.| ||-|..+|+.|-.
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l--~gRt~~~~k~rw~ 96 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLI--PGRTDNAIKNRWN 96 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTS--TTCCHHHHHHHHH
T ss_pred CccccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHc--CCCCHHHHHHHHH
Confidence 445556689999999999999999963 89998865 6889999998754
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.80 E-value=0.019 Score=35.06 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
..||+|.-..++++|+.+|. ..+..|.+.|+ |-|..++..+-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw 43 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERW 43 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHH
Confidence 57999999999999999995 25999999885 67888887653
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.80 E-value=0.029 Score=36.15 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=40.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
.+...+-.||+|....++++|+.+|. ..+..|.+.| ||-|..+|+.+-..
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHN 102 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHH
Confidence 44556789999999999999999995 2489999887 67899998876543
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=95.76 E-value=0.03 Score=33.75 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544 21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL 66 (69)
Q Consensus 21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL 66 (69)
.||+|.....+++|+.+|. -.++.|++... ++|-|..+|+.+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrW 46 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKW 46 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHH
Confidence 4999999999999999995 24999998643 5889999998753
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.05 E-value=0.14 Score=29.76 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC-CCCCCHHHHHh
Q 038544 16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN-VKGLKLSHIKS 64 (69)
Q Consensus 16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~-v~gLT~~~VkS 64 (69)
.+.|-.||+|.-...++.|+.+|. .++.|+.--. .++-|.-+||.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd 50 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH 50 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH
Confidence 346788999999999999999995 4999997544 47888888875
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.68 E-value=0.14 Score=29.56 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544 16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH 65 (69)
Q Consensus 16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH 65 (69)
+...-.||+|.+..|.+|+...|- + ...|...| ||+-|..+|..+
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~f 49 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-D---FNDIRQDF-LPWKSLTSIIEY 49 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHTT-CSSSCHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCCHHHHHHH
Confidence 345668999999999999999995 3 77887621 456688887654
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.18 E-value=0.03 Score=35.21 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+..||+|.-...+++|+..|.. .++.|.+.| ||-|..++..+-+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~ 45 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFL--PNRSPKQCRERWF 45 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSC--TTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHH--CCCCHHHHHHHHh
Confidence 3579999999999999999942 478887776 5778888876643
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.59 E-value=0.18 Score=30.72 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=31.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHH
Q 038544 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK 63 (69)
Q Consensus 18 ~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~Vk 63 (69)
..-.||+|.|..|.+|+.+.|-. ...|.+.+ |+-|..++-
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l--~~Kt~~~cV 81 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECV 81 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTC----HHHHHHTC--TTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC----HHHHHHHc--CCCCHHHHH
Confidence 45679999999999999999852 78887765 455766654
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.56 E-value=2.1 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
|++...+-++++...|..+..+.+.|.+.+|+ +...|..||-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~ 53 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHH
Confidence 67788888999999994456889999999997 4667777764
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=77.54 E-value=4.4 Score=26.51 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=37.7
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
++...--||+..-+.|+.|+..+|.. .-....|.+--..++-|.+.|+...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHH
Confidence 45667789999999999999999953 3457888887777788999887643
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=75.92 E-value=2 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCC-ccC-hHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 17 LPRLRWTPELHKHFSQAVERLGGKY-KAS-PKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 17 k~R~~WT~eLH~~Fv~Av~~LGg~~-~A~-Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
-.+-.||+|.-..-+++|+.+|-.. ... +..|..+ +||-|-.+|++|...|
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY--VPNHTGNSIRHRFRVY 58 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT--STTSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 3456899999999999999999520 122 8888886 4688999999886543
No 49
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=73.24 E-value=1.9 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKG 56 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~g 56 (69)
+|++-|.. |..+||.++ ..|+.|.+.||+|.
T Consensus 45 dL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~ 79 (107)
T 2lm1_A 45 DLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPS 79 (107)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCC
T ss_pred cHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCC
Confidence 78888876 667888654 36899999999975
No 50
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=70.40 E-value=0.77 Score=28.85 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKG 56 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~g 56 (69)
+|++.|.. |..+||.++ ..|+.|.+.||+|.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~ 87 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPS 87 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCS
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCC
Confidence 78888876 678898644 45899999999975
No 51
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=70.32 E-value=0.81 Score=28.35 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+|+..|.. |..+||.++ ..|+.|.+.|++|. ...+++|=.|
T Consensus 50 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k 94 (116)
T 2li6_A 50 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFR 94 (116)
T ss_dssp STTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHH
Confidence 67777765 678898754 36899999999986 4556665443
No 52
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=69.63 E-value=3.8 Score=24.15 Aligned_cols=43 Identities=21% Similarity=0.047 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCC--HHHHHhhhcc
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLK--LSHIKSHLQV 68 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT--~~~VkSHLQK 68 (69)
+|++.|.. |..+||.++ ..|+.|.+.|++|.-+ ...+++|=.|
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k 85 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYER 85 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHH
Confidence 67777765 677888654 4689999999996433 2345554444
No 53
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=69.15 E-value=2.5 Score=26.36 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+|++.|.. |..+||.++ ..|+.|.+.|+++.- ..++..|.
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~--~s~~~~Lk 95 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTS--SSAASSLK 95 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSS--HHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCC--CcHHHHHH
Confidence 67887766 678898644 368999999999853 34444443
No 54
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=66.69 E-value=1.3 Score=28.57 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKG 56 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~g 56 (69)
+|+..|.. |..+||.++ ..|+.|.+.|++|.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~ 99 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPT 99 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCT
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCC
Confidence 68887776 678898754 46899999999975
No 55
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=65.34 E-value=0.64 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCC
Q 038544 24 PELHKHFSQAVERLGGKYK----ASPKRILHMMNVKG 56 (69)
Q Consensus 24 ~eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~g 56 (69)
-+|+..|.. |..+||.++ ..|+.|.+.|+++.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~ 68 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNP 68 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCC
Confidence 378888876 678898644 36899999999864
No 56
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.26 E-value=13 Score=20.09 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 28 KHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 28 ~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+.-+.....+++.+.-+.+.|.+.||+ |...|++++.
T Consensus 16 r~il~l~~~l~~~~~~s~~eIA~~l~i---s~~tV~~~~~ 52 (73)
T 1ku3_A 16 AMVLKMRKGLIDGREHTLEEVGAYFGV---TRERIRQIEN 52 (73)
T ss_dssp HHHHHHHHTTTTSSCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCHHHHHHHHCC---CHHHHHHHHH
Confidence 333444444544356789999999987 6777877754
No 57
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.53 E-value=10 Score=23.49 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLK 58 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT 58 (69)
+|++.|.. |..+||.++ ..|+.|.+.|+.|.-+
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~ 79 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGK 79 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSS
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCC
Confidence 68887876 778898644 4699999999997533
No 58
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.17 E-value=13 Score=19.68 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=18.8
Q ss_pred CccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 41 YKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 41 ~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+.-+-+.|.+.||+ |...|++++.
T Consensus 24 ~g~s~~eIA~~lgi---s~~tV~~~~~ 47 (68)
T 2p7v_B 24 TDYTLEEVGKQFDV---TRERIRQIEA 47 (68)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 45678999999987 6778887764
No 59
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=58.19 E-value=19 Score=20.20 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=20.5
Q ss_pred HhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 36 RLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 36 ~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.|++.+.-+.+.|.+.||+ |...|++++.
T Consensus 32 ~l~~~~~~s~~EIA~~lgi---s~~tV~~~~~ 60 (87)
T 1tty_A 32 GLLDGKPKTLEEVGQYFNV---TRERIRQIEV 60 (87)
T ss_dssp TTTTSSCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHCC---CHHHHHHHHH
Confidence 3443345788899999887 6777877764
No 60
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=57.64 E-value=17 Score=22.18 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
..|-...-++.++.+..-| .++|..|.+.+++ |+|+..|..||++
T Consensus 8 ~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~ 52 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKK 52 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 4688888888898887777 4799999987632 4699999999864
No 61
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.19 E-value=10 Score=23.29 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKG 56 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~g 56 (69)
+|++.|.. |..+||.++ ..|+.|.+.|++|.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~ 75 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPP 75 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCC
Confidence 68888876 678898643 36999999999974
No 62
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=54.81 E-value=33 Score=20.79 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=36.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCC---CCCCHHHHHhh
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNV---KGLKLSHIKSH 65 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v---~gLT~~~VkSH 65 (69)
-.||.|.=..-++-++++|.. +-.|.+.... ++.|.++||+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----W~vI~DRy~~~~~~~Rt~EdLK~R 75 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKER 75 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----HHHHHHHSCTTTSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC----eeeehhhhccCCCCCCCHHHHHHH
Confidence 579999999999999999985 8999999864 57899999874
No 63
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=53.50 E-value=24 Score=19.50 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=31.4
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544 11 QYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH 65 (69)
Q Consensus 11 ~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH 65 (69)
...+.++.|...|++- ...|+......- ..++..+.++...-|||..+|+.=
T Consensus 13 ~~~~~rr~Rt~ft~~Q-l~~Le~~f~~~~--yp~~~~r~~La~~l~l~~~qV~~W 64 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQ-LEILYQKYLLDS--NPTRKMLDHIAHEVGLKKRVVQVW 64 (80)
T ss_dssp CCCCCTTCCSSCCTTT-HHHHHHHHHHCS--SCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHCcCHHHhHHH
Confidence 3455677888888863 334455554442 345555555555556788888753
No 64
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=53.37 E-value=13 Score=26.98 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC----------CCCCCHHHHHhhh
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMN----------VKGLKLSHIKSHL 66 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~----------v~gLT~~~VkSHL 66 (69)
-.||++.++-++..+..+|-...-.+..|..... +...|..+|+.|.
T Consensus 213 k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 213 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 4799999999999999999643467888864322 3457888888775
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=50.17 E-value=23 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.||-.--..|+.|....|.. .-..|...|+ |-|.++|+-|.+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~--~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRD---DIDNIAKDVE--GKTPEEVIEYNA 153 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTT---CHHHHTTSST--TCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHH---HHHHHHHHhc--CCCHHHHHHHHH
Confidence 59999999999999999973 2567766664 679999998865
No 66
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=47.26 E-value=20 Score=20.86 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHH-HHHhhhcc
Q 038544 25 ELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS-HIKSHLQV 68 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~-~VkSHLQK 68 (69)
+...+.+..+...|. ++.+.|.+.+++ |.. -|..||++
T Consensus 11 ~~~~~IL~~Lk~~g~---~ta~eiA~~Lgi---t~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFNVSD---SSALNLAKNIGL---TKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHHTCC---EEHHHHHHHHCG---GGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCC---cCHHHHHHHcCC---CcHHHHHHHHHH
Confidence 456667777777775 678999999987 677 89999874
No 67
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=44.41 E-value=36 Score=21.21 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCC---HHHHHhhhccC
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLK---LSHIKSHLQVN 69 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT---~~~VkSHLQKy 69 (69)
+|++.| .+|..+||.++ -.|+.|.+.|++|... ...+++|=.||
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~ 93 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQY 93 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTT
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 566655 45677887643 4689999999997533 34566655544
No 68
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=42.52 E-value=50 Score=19.32 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 25 ELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
|.+..-..||..||..+.+|=+.|...+|+ +..+|..+|
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~---sK~~vNr~L 50 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKI---NKKKINQQL 50 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCC---CHHHHHHHH
Confidence 667777889999997555888999999998 456665554
No 69
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=42.24 E-value=44 Score=19.75 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=15.0
Q ss_pred ccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 42 KASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 42 ~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.-+-+.|.+.||+ |...|++++.
T Consensus 39 ~~s~~EIA~~lgi---S~~tVr~~~~ 61 (99)
T 3t72_q 39 DYTLEEVGKQFDV---TRERIRQIEA 61 (99)
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHH
Confidence 4566777777776 5666666653
No 70
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.12 E-value=20 Score=18.21 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=17.9
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|++|+.
T Consensus 14 ~s~~eIA~~l~i---s~~tV~~~~~ 35 (61)
T 2jpc_A 14 YTNHGISEKLHI---SIKTVETHRM 35 (61)
T ss_dssp CCSHHHHHHTCS---CHHHHHHHHH
T ss_pred CCHHHHHHHhCC---CHHHHHHHHH
Confidence 468999999987 7788888875
No 71
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=39.17 E-value=20 Score=18.27 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHH
Q 038544 23 TPELHKHFSQAV 34 (69)
Q Consensus 23 T~eLH~~Fv~Av 34 (69)
-+|||.+|-+-|
T Consensus 22 ieelhkkfheli 33 (35)
T 1qp6_A 22 IEELHKKFHELI 33 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 378999997755
No 72
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=38.56 E-value=9.4 Score=23.87 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCc----cChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544 25 ELHKHFSQAVERLGGKYK----ASPKRILHMMNVKGLKLSHIKSHLQV 68 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~~~----A~Pk~Il~~M~v~gLT~~~VkSHLQK 68 (69)
+|++.|.. |..+||.++ ..|+.|.+.|++|. ...+++|=.|
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k 93 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFR 93 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHH
Confidence 67777765 788898654 35899999999986 5666665443
No 73
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=37.97 E-value=47 Score=18.75 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=34.1
Q ss_pred CCCcccCCHHHHHHHHHHHHH------hCCCCccChHHHHHHcCCC--CCCHHHHHh
Q 038544 16 ELPRLRWTPELHKHFSQAVER------LGGKYKASPKRILHMMNVK--GLKLSHIKS 64 (69)
Q Consensus 16 kk~R~~WT~eLH~~Fv~Av~~------LGg~~~A~Pk~Il~~M~v~--gLT~~~VkS 64 (69)
|+.+-.||++.-..|+++... .|+.....+..|.+.|.-. ..|..|++.
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~ 57 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTD 57 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345678999999999998843 2444456778888877632 357777654
No 74
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=37.42 E-value=37 Score=24.33 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGL 57 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gL 57 (69)
+.+|=++.++.++.||. +-|||....+++++++-
T Consensus 273 NaelV~~~~~i~~~lgr-~vATp~EAR~iLgl~~~ 306 (311)
T 3e49_A 273 NAAQVRKIRQVIEGLSL-EVASPAEARTMLGLKGP 306 (311)
T ss_dssp HHHHHHHHHHHHHHTTC-CBCCHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHhCCCcc
Confidence 56899999999999997 68999999999998764
No 75
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=37.34 E-value=37 Score=24.32 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGL 57 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gL 57 (69)
+.+|=++.++.++.||. +-|||....+++++++-
T Consensus 273 NaelV~~~~~i~~~lgr-~vATp~EAR~iLgl~~~ 306 (311)
T 3e02_A 273 NAEQVRKIRRIIEELSL-DIATPDEARAMLKTKGA 306 (311)
T ss_dssp HHHHHHHHHHHHHHTTC-CBCCHHHHHHHHTCCCG
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHhCCCcc
Confidence 56899999999999997 68999999999998763
No 76
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.94 E-value=29 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.1
Q ss_pred CccChHHHHHHcCCCCCCHHH-HHhhhc
Q 038544 41 YKASPKRILHMMNVKGLKLSH-IKSHLQ 67 (69)
Q Consensus 41 ~~A~Pk~Il~~M~v~gLT~~~-VkSHLQ 67 (69)
+-.+++.|...+++.+++... |-.||.
T Consensus 23 ~plta~ei~~~l~i~~~~~ke~Vy~hLe 50 (105)
T 2gmg_A 23 GDYSPSELARILDMRGKGSKKVILEDLK 50 (105)
T ss_dssp SCBCTTHHHHSSCCCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCCCChHHHHHHHHH
Confidence 568999999999998887777 888874
No 77
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.54 E-value=25 Score=21.58 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=21.0
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCC-CCccChHHHHHHc
Q 038544 13 NKSELPRLRWTPELHKHFSQAVERLGG-KYKASPKRILHMM 52 (69)
Q Consensus 13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg-~~~A~Pk~Il~~M 52 (69)
.+.++.|..||++-- .-++....-+- ++...=..|.+.+
T Consensus 4 ~~~Rr~Rt~ft~~ql-~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 4 GSSGRNRFKWGPASQ-QILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCSCCCCCCCCHHHH-HHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHH-HHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 357888999998754 34444444331 1112224555556
No 78
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=35.76 E-value=33 Score=24.66 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGL 57 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gL 57 (69)
+.+|=++.++.++.||. +-|||....++++.++.
T Consensus 276 Na~lV~~~~~i~~~lGr-~vATp~EAR~iLgl~~~ 309 (314)
T 3lot_A 276 NAEQVEKMVRIVKELGK-RPATPDEVREILGLKGK 309 (314)
T ss_dssp HHHHHHHHHHHHHHTTC-EECCHHHHHHHHTCCCG
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHhCCCCc
Confidence 56899999999999997 68999999999998764
No 79
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.60 E-value=63 Score=18.47 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
..+..++-++++...|--+..+-..|.+.+|+ ++..|..||.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~ 49 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHH
Confidence 35667788889998882245788999999997 5677877764
No 80
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.71 E-value=48 Score=19.20 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH-HhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 25 ELHKHFSQAVE-RLGGKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 25 eLH~~Fv~Av~-~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
+....+.+|+. .|... -+.|+. +-+.|+|..+|+..|
T Consensus 97 e~~~~l~~~l~~~L~~~----~r~v~~-~~~~g~s~~EIA~~l 134 (164)
T 3mzy_A 97 EEIEEFKKFSENNFSKF----EKEVLT-YLIRGYSYREIATIL 134 (164)
T ss_dssp HHHHHHHHHHHHHSCHH----HHHHHH-HHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHH----HHHHHH-HHHcCCCHHHHHHHH
Confidence 34445666666 55521 233444 344555555544443
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.12 E-value=45 Score=18.56 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=11.0
Q ss_pred ChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 44 SPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 44 ~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
+-+.|.+.||+ +...|++|+.
T Consensus 55 s~~eIA~~lgi---s~~tV~~~l~ 75 (92)
T 3hug_A 55 STAQIATDLGI---AEGTVKSRLH 75 (92)
T ss_dssp CHHHHHHHHTS---CHHHHHHHHH
T ss_pred CHHHHHHHHCc---CHHHHHHHHH
Confidence 44555555554 4555555553
No 82
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=33.86 E-value=15 Score=23.60 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=33.9
Q ss_pred CcccCCH-HHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 18 PRLRWTP-ELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 18 ~R~~WT~-eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+|+-++ ||+++=+..+++-|- ..+..|..|++.|.|..++-.-||
T Consensus 56 ~~fr~S~~~l~~cslkvle~~gS----PSr~LL~~~~~~g~Tl~~L~~~Lq 102 (117)
T 2g7r_A 56 GRLRLSCLDLEQCSLKVLEPEGS----PSLCLLKLMGEKGCTVTELSDFLQ 102 (117)
T ss_dssp ----CCHHHHHHHHGGGGSTTCC----HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccccChHHhhhhhhhhhccCCC----hHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6777777 888888777777663 257889999999999999888776
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.04 E-value=55 Score=16.69 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.7
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|++++.
T Consensus 32 ~s~~eIA~~lgi---s~~tv~~~~~ 53 (70)
T 2o8x_A 32 LSYADAAAVCGC---PVGTIRSRVA 53 (70)
T ss_dssp CCHHHHHHHHTS---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 468888888887 6777777764
No 84
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.05 E-value=14 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=15.7
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+-+.|.+.||+ +...|++|+.
T Consensus 43 ~s~~eIA~~l~i---s~~tV~~~l~ 64 (95)
T 3c57_A 43 LTNKQIADRMFL---AEKTVKNYVS 64 (95)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 357788888876 6677777764
No 85
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=29.64 E-value=33 Score=17.54 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGG 39 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg 39 (69)
+...-.++-|+|....+.+.....|.
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCC
Confidence 34445789999999999999999996
No 86
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=29.25 E-value=65 Score=19.42 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCC----------CccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 25 ELHKHFSQAVERLGGK----------YKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 25 eLH~~Fv~Av~~LGg~----------~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
|+.....+|++.|... +.-+.+.|.+.||+ +...|++++.
T Consensus 129 e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgi---s~~tV~~~l~ 178 (194)
T 1or7_A 129 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDC---PVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHHCC---CHHHHHHHHH
Confidence 4555566777776521 22345566666654 5666666654
No 87
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.13 E-value=71 Score=16.76 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=15.8
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|++|+.
T Consensus 32 ~s~~eIA~~l~i---s~~tV~~~~~ 53 (79)
T 1x3u_A 32 LPNKSIAYDLDI---SPRTVEVHRA 53 (79)
T ss_dssp CCHHHHHHHTTS---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 467788888876 6777777764
No 88
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.97 E-value=38 Score=17.55 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.+|+..-.-|.- + .-| -+.+.|.+.||+ +...|.+|+.
T Consensus 11 ~L~~~e~~il~~-~-~~g----~s~~eIA~~l~i---s~~tV~~~~~ 48 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQD----KTTKEIASELFI---SEKTVRNHIS 48 (74)
T ss_dssp CCCHHHHHHHHH-H-TTT----CCHHHHHHHHTS---CHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcC----CCHHHHHHHHCC---CHHHHHHHHH
Confidence 456655444433 3 222 378999999987 6788888775
No 89
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.75 E-value=37 Score=18.78 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.9
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|++|+.
T Consensus 37 ~s~~eIA~~l~i---s~~tV~~~l~ 58 (82)
T 1je8_A 37 LPNKMIARRLDI---TESTVKVHVK 58 (82)
T ss_dssp CCHHHHHHHHTS---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 468999999987 7788888875
No 90
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=27.56 E-value=34 Score=20.76 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=12.8
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|+++|.
T Consensus 110 ~s~~EIA~~lgi---s~~tV~~~l~ 131 (157)
T 2lfw_A 110 FSPEDAAYLIEV---DTSEVETLVT 131 (157)
T ss_dssp CCHHHHHHTTTS---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 345666666654 5566666654
No 91
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=27.10 E-value=89 Score=17.55 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=33.5
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhC--CCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544 13 NKSELPRLRWTPELHKHFSQAVERLG--GKYKASPKRILHMMNVKGLKLSHIKSHL 66 (69)
Q Consensus 13 ~~~kk~R~~WT~eLH~~Fv~Av~~LG--g~~~A~Pk~Il~~M~v~gLT~~~VkSHL 66 (69)
.+.++.|-..|++--.......+.+| -. ..++....++...-|||..+|+-=.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~lgL~~~~VkvWF 69 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETGVPRQVLKVWL 69 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHhCCCcccccCCc
Confidence 45677888889875554445555555 32 3455566666666678899887543
No 92
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=25.91 E-value=50 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHH
Q 038544 22 WTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK 63 (69)
Q Consensus 22 WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~Vk 63 (69)
-|++||+.|++|++.+=. ...+++.+++|....+-|.
T Consensus 279 at~eL~~m~l~a~~~vl~-----~~~l~~~lgIP~~l~~lI~ 315 (652)
T 2vob_A 279 YGTQLHAIFMEATAQVIE-----SDEKLRLFAIPEEFWPRIR 315 (652)
T ss_dssp HHHHHHHHHHHHHHHHHT-----CHHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-----CHHHHHHcCcCHHHHHHHH
Confidence 478999999999877543 2367788888876555543
No 93
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.11 E-value=45 Score=19.07 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=16.9
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.|++ +...|++|++
T Consensus 45 ~s~~eIA~~L~i---S~~TV~~~~~ 66 (90)
T 3ulq_B 45 FTNQEIADALHL---SKRSIEYSLT 66 (90)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 368888888887 6777888875
No 94
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=24.64 E-value=1.2e+02 Score=19.71 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCC-CccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 28 KHFSQAVERLGGK-YKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 28 ~~Fv~Av~~LGg~-~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
..++++|..|... ...+.+.|.+.|++ +...|...|+
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~v---s~~tvs~~l~ 42 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQV---SPPAVTEMMK 42 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCC---ChhHHHHHHH
Confidence 4689999988642 35789999999998 4555544443
No 95
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=23.78 E-value=13 Score=22.64 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=8.2
Q ss_pred CCCHHHHHhhhc
Q 038544 56 GLKLSHIKSHLQ 67 (69)
Q Consensus 56 gLT~~~VkSHLQ 67 (69)
|+|...|+++++
T Consensus 162 gis~~tV~~~l~ 173 (184)
T 2q1z_A 162 GLPLGTIKSRIR 173 (184)
T ss_dssp CCCCHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 446777777765
No 96
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=23.65 E-value=17 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHHhCC
Q 038544 20 LRWTPELHKHFSQAVERLGG 39 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg 39 (69)
-.||++.+..|.+|+.++|-
T Consensus 190 d~WT~eE~~lFe~al~~yGK 209 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK 209 (482)
T ss_dssp --------------------
T ss_pred cccCHHHHHHHHHHHHHcCc
Confidence 37999999999999999985
No 97
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.93 E-value=39 Score=18.86 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.4
Q ss_pred cChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 43 ASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 43 A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
-+.+.|.+.||+ +...|++|+.
T Consensus 45 ~s~~eIA~~l~i---s~~tV~~~l~ 66 (91)
T 2rnj_A 45 YSNQEIASASHI---TIKTVKTHVS 66 (91)
T ss_dssp CCTTHHHHHHTC---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHH
Confidence 367889999987 7788888875
No 98
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=22.83 E-value=18 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred ccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 42 KASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 42 ~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
..+.+.|.+.|| +|++...|+++|+
T Consensus 213 ~ps~~EIAe~Lg-~~is~~tVk~~l~ 237 (245)
T 3ugo_A 213 EPSYEEIAEAMG-PGWDAKRVEETLK 237 (245)
T ss_dssp --------------------------
T ss_pred CCCHHHHHHHHC-CCCCHHHHHHHHH
Confidence 468889999998 6678999999886
No 99
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.75 E-value=65 Score=16.10 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=19.4
Q ss_pred CcccCCHHHHHHHHHHHHHhCC
Q 038544 18 PRLRWTPELHKHFSQAVERLGG 39 (69)
Q Consensus 18 ~R~~WT~eLH~~Fv~Av~~LGg 39 (69)
--++.+++|+..+.+.....|.
T Consensus 12 i~vrl~~el~~~l~~~a~~~g~ 33 (55)
T 2k9i_A 12 LGVYIPQEWHDRLMEIAKEKNL 33 (55)
T ss_dssp EEEEECHHHHHHHHHHHHHHTC
T ss_pred EEEEcCHHHHHHHHHHHHHhCC
Confidence 3578999999999999999996
No 100
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=22.74 E-value=92 Score=19.47 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=17.4
Q ss_pred HHHhCCCCccChHHHHHHcCCC
Q 038544 34 VERLGGKYKASPKRILHMMNVK 55 (69)
Q Consensus 34 v~~LGg~~~A~Pk~Il~~M~v~ 55 (69)
|-.|||.-.++|+.++++-.++
T Consensus 74 Il~LGg~P~~t~~~~~~~s~i~ 95 (161)
T 2z90_A 74 MRALDAVPDGRSDTVAATTTLP 95 (161)
T ss_dssp HHHTTCCCCCCHHHHHHHCCSC
T ss_pred HHHCCCCCCCCHHHHHhHCCCC
Confidence 4678998888999999877654
No 101
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=22.71 E-value=1.2e+02 Score=18.16 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCCccChHHHHHHcCCCC
Q 038544 24 PELHKHFSQAVERLGGKYKASPKRILHMMNVKG 56 (69)
Q Consensus 24 ~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~g 56 (69)
.++-++-++++...|. -..|..|.+..|||.
T Consensus 18 ~d~eekVLe~LkeaG~--PlkageIae~~GvdK 48 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGS--PVKLAQLVKECQAPK 48 (80)
T ss_dssp HHHHHHHHHHHHHHTS--CEEHHHHHHHHTSCH
T ss_pred chHHHHHHHHHHHcCC--CCCHHHHHHHHCCCH
Confidence 4678889999999996 478899999999863
No 102
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=22.36 E-value=47 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHH
Q 038544 22 WTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHI 62 (69)
Q Consensus 22 WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~V 62 (69)
-|++||+.|++|++.+=. ...+++.+++|....+-|
T Consensus 266 at~eL~~m~~~a~~~v~~-----~~~l~~~lgiP~~~~~lI 301 (619)
T 2io8_A 266 ATNELHLMYLHATDKVLK-----DDNLLALFDIPKILWPRL 301 (619)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CHHHHGGGCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-----CHHHHHHcCCCHHHHHHH
Confidence 478999999999877532 235777788876555544
No 103
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=22.35 E-value=2.1e+02 Score=20.11 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=32.9
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHh
Q 038544 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKS 64 (69)
Q Consensus 18 ~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkS 64 (69)
|+..||+-.=++|+.|+..+|.. ......|.+-=.++.-+.+.|+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~ 47 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGE 47 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHH
Confidence 56789999999999999999964 33456665554555556655543
No 104
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=21.91 E-value=1e+02 Score=16.27 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHh
Q 038544 14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKS 64 (69)
Q Consensus 14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkS 64 (69)
+++++|...|++--. .+++.....- ..++..+.++-.--|||..+|+.
T Consensus 2 k~rr~Rt~ft~~q~~-~Le~~F~~~~--yp~~~~r~~La~~l~l~~~qV~~ 49 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLH-TLRTCYAANP--RPDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCSCCCCCCSHHHHH-HHHHHHHHCS--CCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHH-HHHHHHhcCC--CcCHHHHHHHHHHHCcCHHHHHH
Confidence 467888889987433 4444444432 34455555555555678888875
No 105
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.76 E-value=62 Score=18.89 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544 21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 (69)
Q Consensus 21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ 67 (69)
.-|+..-+-|.-.+ -| -+.+.|.+.|++ +...|++|++
T Consensus 34 ~Lt~re~~Vl~l~~--~G----~s~~EIA~~L~i---S~~TV~~~l~ 71 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EG----FLVTEIAKKLNR---SIKTISSQKK 71 (99)
T ss_dssp SCCHHHHHHHHHHH--HT----CCHHHHHHHHTS---CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cC----CCHHHHHHHHCc---CHHHHHHHHH
Confidence 34555555443322 23 357999999988 7788888875
No 106
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=21.27 E-value=1.1e+02 Score=21.66 Aligned_cols=32 Identities=13% Similarity=0.341 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVK 55 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~ 55 (69)
+.+|=++.++.++.||. +-|||....++++++
T Consensus 250 Na~lV~~~~~i~~~lgr-~vAtp~eAR~iLgl~ 281 (282)
T 2y7e_A 250 NAQLVARLARIAKEIGR-PLATPEQAREILALN 281 (282)
T ss_dssp HHHHHHHHHHHHHHHTC-CBCCHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHhCCC
Confidence 56899999999999998 689999999999864
No 107
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=20.61 E-value=78 Score=18.76 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCC
Q 038544 22 WTPELHKHFSQAVERLGGKYKASPKRILHMMNVKG 56 (69)
Q Consensus 22 WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~g 56 (69)
|..+.+...+.++..+| .+.|.+.|||+.
T Consensus 10 ~ar~ies~iL~~La~~g------Q~~vAe~~Gvde 38 (83)
T 1zs4_A 10 EALRIESALLNKIAMLG------TEKTAEAVGVDK 38 (83)
T ss_dssp HHHHHHHHHHHHHHHHC------HHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHh------hHHHHHHhCCCH
Confidence 56677888888888888 467788888753
No 108
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=20.34 E-value=1.2e+02 Score=21.44 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVK 55 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~ 55 (69)
+.+|=++.++.++.||. +-|||....++++++
T Consensus 248 Na~lV~~~~~i~~~lgr-~vAtp~eAR~iLgl~ 279 (284)
T 3chv_A 248 NAALVRRSVELCDKYQR-PVASWQQAREILGLP 279 (284)
T ss_dssp HHHHHHHHHHHHHHTTC-CBCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHcCCC
Confidence 56899999999999997 689999999999975
No 109
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=20.12 E-value=1.1e+02 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCccChHHHHHHcCC
Q 038544 22 WTPELHKHFSQAVERLGGKYKASPKRILHMMNV 54 (69)
Q Consensus 22 WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v 54 (69)
=+.+|=++.++.++.+|. +-|||....+++++
T Consensus 243 sNa~lV~~~~~i~~~~gr-~vAtp~eAR~iLgl 274 (275)
T 3no5_A 243 SNAALVRQVAELCEEYGR-PVATAAQAREIMSL 274 (275)
T ss_dssp CHHHHHHHHHHHHHHTTC-CBCCHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcCC-CCCCHHHHHHHhCC
Confidence 356899999999999997 68999999998874
No 110
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=20.04 E-value=16 Score=22.53 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=19.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHc
Q 038544 20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMM 52 (69)
Q Consensus 20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M 52 (69)
+++|..-.+.|++|.+.-||. +--.|..++
T Consensus 22 lrytnsteqqfleamestggr---vriaiakll 51 (104)
T 2l3n_A 22 LRYTNSTEQQFLEAMESTGGR---VRIAIAKLL 51 (104)
T ss_dssp HHHHTCCHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHhccchHHHHHHHHHhcCCe---eehHHHHHH
Confidence 345555567899999999984 333444443
No 111
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.01 E-value=79 Score=14.38 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544 23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN 69 (69)
Q Consensus 23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy 69 (69)
+++....++..+. -| .+.+.|.+.+|+ +..-|..++..|
T Consensus 7 ~~~~~~~i~~~~~-~g----~s~~~IA~~lgi---s~~Tv~~~~~~~ 45 (51)
T 1tc3_C 7 SDTERAQLDVMKL-LN----VSLHEMSRKISR---SRHCIRVYLKDP 45 (51)
T ss_dssp CHHHHHHHHHHHH-TT----CCHHHHHHHHTC---CHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHH-cC----CCHHHHHHHHCc---CHHHHHHHHhhH
Confidence 4555444544432 23 368899999997 577777777554
Done!